@jbrowse/bandage-core 9.10.0 → 10.0.0

package/dist/layout/walkRowDraw.js

@@ -26,15 +26,16 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "../chunks/chunk-FJZ2TB46.js";
-import "../chunks/chunk-K5NYTPLC.js";
+} from "../chunks/chunk-VZNKA3K2.js";
+import "../chunks/chunk-DCJC32QW.js";
 import "../chunks/chunk-NNODIW4U.js";
-import "../chunks/chunk-4IYP43W6.js";
+import "../chunks/chunk-NP356MC2.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-WFB5TXRA.js";
-import "../chunks/chunk-XZ2BLAA6.js";
+import "../chunks/chunk-REE4GUDM.js";
 import "../chunks/chunk-PBENCR5L.js";
-import "../chunks/chunk-IGJCTPFB.js";
+import "../chunks/chunk-EMUUNWRU.js";
+import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-ES2N6V56.js";
 import "../chunks/chunk-BPLIXMH7.js";
 import "../chunks/chunk-3ZZSX5HN.js";

package/dist/layout/walkRowLayout.js

@@ -2,9 +2,10 @@ import {
   walkRowLabels,
   walkRowLayout,
   walkRowsExtent
-} from "../chunks/chunk-TOVOJNT7.js";
-import "../chunks/chunk-6PYZYBBF.js";
-import "../chunks/chunk-IGJCTPFB.js";
+} from "../chunks/chunk-3APK25GI.js";
+import "../chunks/chunk-KAN2WTG5.js";
+import "../chunks/chunk-EMUUNWRU.js";
+import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-BPLIXMH7.js";
 import "../chunks/chunk-CPMHA4W5.js";
 import "../chunks/chunk-FYQWPEEY.js";

package/dist/layout/walkRows.js

@@ -1,8 +1,9 @@
 import {
   filterSamples,
   walkRows
-} from "../chunks/chunk-6PYZYBBF.js";
-import "../chunks/chunk-IGJCTPFB.js";
+} from "../chunks/chunk-KAN2WTG5.js";
+import "../chunks/chunk-EMUUNWRU.js";
+import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-BPLIXMH7.js";
 import "../chunks/chunk-FYQWPEEY.js";
 export {

package/dist/layout/walkStrip.js

@@ -9,18 +9,19 @@ import {
   walkStripApplies,
   walkStripFrame,
   walkStripLabelsTree
-} from "../chunks/chunk-DMH4NL2M.js";
+} from "../chunks/chunk-WI7ZHJ27.js";
 import {
   LABELLED_ROW_PX
-} from "../chunks/chunk-FJZ2TB46.js";
-import "../chunks/chunk-K5NYTPLC.js";
+} from "../chunks/chunk-VZNKA3K2.js";
+import "../chunks/chunk-DCJC32QW.js";
 import "../chunks/chunk-NNODIW4U.js";
-import "../chunks/chunk-4IYP43W6.js";
+import "../chunks/chunk-NP356MC2.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-WFB5TXRA.js";
-import "../chunks/chunk-XZ2BLAA6.js";
+import "../chunks/chunk-REE4GUDM.js";
 import "../chunks/chunk-PBENCR5L.js";
-import "../chunks/chunk-IGJCTPFB.js";
+import "../chunks/chunk-EMUUNWRU.js";
+import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-ES2N6V56.js";
 import "../chunks/chunk-BPLIXMH7.js";
 import "../chunks/chunk-3ZZSX5HN.js";

package/dist/layoutModes.js

@@ -4,19 +4,20 @@ import {
   LAYOUT_MODE_VALUES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-FUUJ76KD.js";
-import "./chunks/chunk-LOEA5IHZ.js";
-import "./chunks/chunk-CXKZYLYS.js";
+} from "./chunks/chunk-ICXMWYOA.js";
+import "./chunks/chunk-IM4SJUPO.js";
 import "./chunks/chunk-CWFNEKST.js";
+import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-L3O7AWLI.js";
 import "./chunks/chunk-TZFWUT2C.js";
 import "./chunks/chunk-HNQPEMYE.js";
 import "./chunks/chunk-C44YRP5F.js";
 import "./chunks/chunk-RVS2QCOX.js";
-import "./chunks/chunk-TOVOJNT7.js";
-import "./chunks/chunk-6PYZYBBF.js";
-import "./chunks/chunk-XZ2BLAA6.js";
-import "./chunks/chunk-IGJCTPFB.js";
+import "./chunks/chunk-3APK25GI.js";
+import "./chunks/chunk-KAN2WTG5.js";
+import "./chunks/chunk-REE4GUDM.js";
+import "./chunks/chunk-EMUUNWRU.js";
+import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";
 import "./chunks/chunk-BPLIXMH7.js";
 import "./chunks/chunk-3ZZSX5HN.js";

package/dist/pathAnchoring.js

@@ -5,7 +5,8 @@ import {
   pathOrigin,
   surveyPaths,
   trimOrigins
-} from "./chunks/chunk-IGJCTPFB.js";
+} from "./chunks/chunk-EMUUNWRU.js";
+import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-BPLIXMH7.js";
 import "./chunks/chunk-FYQWPEEY.js";
 export {

package/dist/pathColors.js

@@ -9,8 +9,9 @@ import {
   pathHueAt,
   pathLegend,
   walkLabelsOf
-} from "./chunks/chunk-XZ2BLAA6.js";
-import "./chunks/chunk-IGJCTPFB.js";
+} from "./chunks/chunk-REE4GUDM.js";
+import "./chunks/chunk-EMUUNWRU.js";
+import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-BPLIXMH7.js";
 import "./chunks/chunk-3ZZSX5HN.js";
 import "./chunks/chunk-AB35TJST.js";

package/dist/pathVisits.js

@@ -0,0 +1,8 @@
+import {
+  PathVisits,
+  PathVisitsBuilder
+} from "./chunks/chunk-RAEABQNW.js";
+export {
+  PathVisits,
+  PathVisitsBuilder
+};

package/dist/pipeline.js

@@ -11,18 +11,19 @@ import {
   forceLayout,
   layoutExtent,
   loadGraph
-} from "./chunks/chunk-HRAU4VTB.js";
+} from "./chunks/chunk-W4GZCVUK.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-OPPVSPEF.js";
 import "./chunks/chunk-PUG7LXDF.js";
-import "./chunks/chunk-J7YKQ5YW.js";
-import "./chunks/chunk-G45YY72K.js";
-import "./chunks/chunk-OA7RIMZ2.js";
+import "./chunks/chunk-QXAB2FLJ.js";
 import "./chunks/chunk-QYBZZI5H.js";
+import "./chunks/chunk-PSMKPSO4.js";
 import "./chunks/chunk-CDLPYR5O.js";
 import "./chunks/chunk-JVLURPFW.js";
-import "./chunks/chunk-IGJCTPFB.js";
+import "./chunks/chunk-EMUUNWRU.js";
+import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";
+import "./chunks/chunk-G45YY72K.js";
 import "./chunks/chunk-BPLIXMH7.js";
 import "./chunks/chunk-TAMCZHLW.js";
 import "./chunks/chunk-UVBGRJQX.js";

package/dist/referenceRampCss.js

@@ -4,13 +4,14 @@ import {
   rampHue,
   rampHueCss,
   rampStops
-} from "./chunks/chunk-K5NYTPLC.js";
-import "./chunks/chunk-4IYP43W6.js";
+} from "./chunks/chunk-DCJC32QW.js";
+import "./chunks/chunk-NP356MC2.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-WFB5TXRA.js";
-import "./chunks/chunk-XZ2BLAA6.js";
+import "./chunks/chunk-REE4GUDM.js";
 import "./chunks/chunk-PBENCR5L.js";
-import "./chunks/chunk-IGJCTPFB.js";
+import "./chunks/chunk-EMUUNWRU.js";
+import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";
 import "./chunks/chunk-BPLIXMH7.js";
 import "./chunks/chunk-3ZZSX5HN.js";

package/dist/referenceStrip.js

@@ -7,13 +7,14 @@ import {
   stripBlockAt,
   stripOverhang,
   stripPixels
-} from "./chunks/chunk-BDWQQK33.js";
-import "./chunks/chunk-4IYP43W6.js";
+} from "./chunks/chunk-KJYSOHVN.js";
+import "./chunks/chunk-NP356MC2.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-WFB5TXRA.js";
-import "./chunks/chunk-XZ2BLAA6.js";
+import "./chunks/chunk-REE4GUDM.js";
 import "./chunks/chunk-PBENCR5L.js";
-import "./chunks/chunk-IGJCTPFB.js";
+import "./chunks/chunk-EMUUNWRU.js";
+import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";
 import "./chunks/chunk-BPLIXMH7.js";
 import "./chunks/chunk-3ZZSX5HN.js";

package/dist/renderer/GeometryBuilder.js

@@ -11,12 +11,13 @@ import {
   endTangent,
   getNodeColor,
   hslToRgb
-} from "../chunks/chunk-4IYP43W6.js";
+} from "../chunks/chunk-NP356MC2.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-WFB5TXRA.js";
-import "../chunks/chunk-XZ2BLAA6.js";
+import "../chunks/chunk-REE4GUDM.js";
 import "../chunks/chunk-PBENCR5L.js";
-import "../chunks/chunk-IGJCTPFB.js";
+import "../chunks/chunk-EMUUNWRU.js";
+import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-ES2N6V56.js";
 import "../chunks/chunk-BPLIXMH7.js";
 import "../chunks/chunk-3ZZSX5HN.js";

package/dist/tubeMap/bundle.js

@@ -1,11 +1,12 @@
 import {
   bundleRoutes
-} from "../chunks/chunk-LZWSZRUY.js";
-import "../chunks/chunk-CXKZYLYS.js";
+} from "../chunks/chunk-FG762CCP.js";
+import "../chunks/chunk-IM4SJUPO.js";
 import "../chunks/chunk-CWFNEKST.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-XZ2BLAA6.js";
-import "../chunks/chunk-IGJCTPFB.js";
+import "../chunks/chunk-REE4GUDM.js";
+import "../chunks/chunk-EMUUNWRU.js";
+import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-BPLIXMH7.js";
 import "../chunks/chunk-3ZZSX5HN.js";
 import "../chunks/chunk-AB35TJST.js";

package/dist/tubeMap/coarsen.js

@@ -1,12 +1,15 @@
 import {
   pathSteps
-} from "../chunks/chunk-CXKZYLYS.js";
+} from "../chunks/chunk-IM4SJUPO.js";
 import "../chunks/chunk-CWFNEKST.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-XZ2BLAA6.js";
+import "../chunks/chunk-REE4GUDM.js";
 import {
   pathOrigin
-} from "../chunks/chunk-IGJCTPFB.js";
+} from "../chunks/chunk-EMUUNWRU.js";
+import {
+  PathVisitsBuilder
+} from "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-BPLIXMH7.js";
 import "../chunks/chunk-3ZZSX5HN.js";
 import "../chunks/chunk-AB35TJST.js";
@@ -231,7 +234,7 @@ function coarsenTubeMap(graph, sigma) {
   };
   const deviations = /* @__PURE__ */ new Map();
   const coarsePaths = [];
-  const pathVisits = /* @__PURE__ */ new Map();
+  const pathVisits = new PathVisitsBuilder();
   const edges = /* @__PURE__ */ new Map();
   const depth = /* @__PURE__ */ new Map();
   for (const { path, runs, gaps } of walks) {
@@ -299,14 +302,13 @@ function coarsenTubeMap(graph, sigma) {
     let pos = 0;
     steps.forEach(({ node, strand }, i) => {
       depth.set(node.id, (depth.get(node.id) ?? 0) + 1);
-      const visits = pathVisits.get(node.name) ?? [];
-      visits.push({
-        path: visitName,
-        sample: path.sample ?? visitName,
-        start: pos,
-        strand
-      });
-      pathVisits.set(node.name, visits);
+      pathVisits.add(
+        node.name,
+        visitName,
+        path.sample ?? visitName,
+        pos,
+        strand === "-"
+      );
       pos += node.length;
       const next = steps[i + 1];
       if (next) {
@@ -335,7 +337,7 @@ function coarsenTubeMap(graph, sigma) {
       nodes,
       edges: [...edges.values()],
       paths: coarsePaths,
-      pathVisits,
+      pathVisits: pathVisits.build(),
       reads: void 0
     },
     members,

package/dist/tubeMap/draw.js

@@ -8,12 +8,13 @@ import {
   tubeMapMismatchAt,
   tubeMapPicture,
   tubeMapTrackAt
-} from "../chunks/chunk-PIN7ZMTZ.js";
-import "../chunks/chunk-XXT2JCAC.js";
+} from "../chunks/chunk-EU6FBTQF.js";
 import "../chunks/chunk-HK5Y2YWV.js";
+import "../chunks/chunk-XXT2JCAC.js";
 import "../chunks/chunk-CWFNEKST.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-IGJCTPFB.js";
+import "../chunks/chunk-EMUUNWRU.js";
+import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-BPLIXMH7.js";
 import "../chunks/chunk-FYQWPEEY.js";
 export {

package/dist/tubeMap/nodeColors.js

@@ -1,12 +1,13 @@
 import {
   tubeMapNodeColors
-} from "../chunks/chunk-TFAFIRZB.js";
-import "../chunks/chunk-4IYP43W6.js";
+} from "../chunks/chunk-OEPCRURR.js";
+import "../chunks/chunk-NP356MC2.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-WFB5TXRA.js";
-import "../chunks/chunk-XZ2BLAA6.js";
+import "../chunks/chunk-REE4GUDM.js";
 import "../chunks/chunk-PBENCR5L.js";
-import "../chunks/chunk-IGJCTPFB.js";
+import "../chunks/chunk-EMUUNWRU.js";
+import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-ES2N6V56.js";
 import "../chunks/chunk-BPLIXMH7.js";
 import "../chunks/chunk-3ZZSX5HN.js";

package/dist/types/gbzWindow.d.ts

@@ -1,4 +1,5 @@
-import type { GBZBase, PathName, PathQuery, SnarlOutput } from '@gmod/gbz-base';
+import type { GraphTables } from './gfa/graphTables.js';
+import type { CompactSubgraph, GBZBase, PathName, PathQuery, SnarlOutput } from '@gmod/gbz-base';
 export declare class NoReferenceSampleError extends Error {
     name: string;
     constructor(anchor: string, referenceSamples: string[]);
@@ -32,3 +33,16 @@ export declare const GBZ_CUT_DEFAULTS: {
     readonly limit: 100000;
 };
 export declare function cutWindowGFA(db: GBZBase, query: PathQuery | undefined, start: number, end: number, opts: GbzWindowOptions): Promise<string>;
+/**
+ * The cut `cutWindowGFA` writes, as the tables `gfaTables` would read from
+ * it. A window on one reference fragment is one cut, whose typed arrays
+ * become the tables with no GFA written or read: writing an every-haplotype
+ * KIV-2 cut out and parsing it back was 2 s. A window over several
+ * fragments joins their GFA as text. Empty text for no indexed path.
+ */
+export declare function cutWindowTables(db: GBZBase, query: PathQuery | undefined, start: number, end: number, opts: GbzWindowOptions): Promise<GraphTables | string>;
+/**
+ * A gbz-base cut's typed arrays as the tables of the GFA `toGFA` writes for
+ * it: its segments, its links, and its walks in order, steps by GBWT handle
+ */
+export declare function compactTables(cut: CompactSubgraph): GraphTables;

package/dist/types/gfa/gfaConverter.d.ts

@@ -6,6 +6,6 @@ export declare function convertGFAToGraph(gfaGraph: GFAGraph, name?: string): {
     edges: GraphEdge[];
     paths: GraphPath[] | undefined;
     anchorPaths: import("../types.js").PathOrigin[] | undefined;
-    pathVisits: Map<string, import("../types.js").PathVisit[]> | undefined;
+    pathVisits: import("../index.js").PathVisits | undefined;
     anchoredBy: "tags" | undefined;
 };

package/dist/types/index.d.ts

@@ -93,11 +93,12 @@ export { WELL_KNOWN_SAMPLES, assemblyWalk, backboneAssembly, featuresOnBackbone,
 export type { AssemblyNames, Backbone, BackboneContig } from './reference.js';
 export { LABEL_CHAR_PX, LABEL_PAD, LABEL_PX } from './overlayLabels.js';
 export type { Graph, GraphEdge, GraphNode, LayoutResult, NodeSegment, } from './types.js';
-export { cutWindowGFA, haplotypeWanted, referencePathQuery, referenceSamplesOf, resolveReferenceSample, } from './gbzWindow.js';
+export { compactTables, cutWindowGFA, cutWindowTables, haplotypeWanted, referencePathQuery, referenceSamplesOf, resolveReferenceSample, } from './gbzWindow.js';
 export type { GbzWindowOptions } from './gbzWindow.js';
 export { gfaTables } from './gfa/gfaTables.js';
 export { graphFromTables, graphTablesGFA } from './gfa/graphTables.js';
 export type { GraphTables } from './gfa/graphTables.js';
+export { PathVisits, PathVisitsBuilder } from './pathVisits.js';
 export { engineKey } from './pipeline.js';
 export { axisScaleOf, contains, padded, screenToLayout, viewportOf, zoomAbout, } from './viewport.js';
 export type { PaneTransform } from './viewport.js';

package/dist/types/layout/deletionRoutes.d.ts

@@ -15,7 +15,7 @@ export declare function withDeletionRoutes(graph: Graph, deletions: DeletionEdge
         name: string;
         paths?: import("../types.js").GraphPath[];
         anchorPaths?: import("../types.js").PathOrigin[];
-        pathVisits?: Map<string, import("../types.js").PathVisit[]>;
+        pathVisits?: import("../index.js").PathVisits;
         anchoredBy?: "tags" | "paths";
         referencePath?: string;
         reads?: import("../gaf/parseGaf.js").GafRecord[];

package/dist/types/pathAnchoring.d.ts

@@ -1,4 +1,5 @@
-import type { Graph, PathOrigin, PathVisit } from './types.js';
+import type { PathVisits } from './pathVisits.js';
+import type { Graph, PathOrigin } from './types.js';
 export declare function pathOrigin(pathName: string): {
     name: string;
     start: number;
@@ -13,7 +14,7 @@ export interface PathSteps {
 }
 export declare function surveyPaths(paths: PathSteps[], lengthOf: (segmentId: string) => number): {
     anchorPaths: PathOrigin[];
-    pathVisits: Map<string, PathVisit[]>;
+    pathVisits: PathVisits;
 };
 export declare function chooseReferencePath(anchorPaths: PathOrigin[], preferred: string | undefined): PathOrigin | undefined;
 export declare function anchorFromPaths(graph: Graph, preferred: string | undefined): Graph;

package/dist/types/pathVisits.d.ts

@@ -0,0 +1,64 @@
+import type { PathVisit } from './types.js';
+/**
+ * Every visit each path makes to each segment, as columns rather than an
+ * object per visit: a gbz-base cut of every haplotype is millions of them.
+ * A segment's visits are contiguous and in walk order, and segments iterate in
+ * the order they were first visited. Reads as a map from segment name to its
+ * visits, each built when asked for; a pass over every segment reads the
+ * columns instead.
+ */
+export declare class PathVisits {
+    readonly segments: string[];
+    readonly offsets: Int32Array;
+    readonly path: Int32Array;
+    readonly start: Float64Array;
+    readonly reversed: Uint8Array;
+    readonly paths: string[];
+    readonly samples: string[];
+    private readonly slots;
+    constructor(columns: {
+        segments: string[];
+        offsets: Int32Array;
+        path: Int32Array;
+        start: Float64Array;
+        reversed: Uint8Array;
+        paths: string[];
+        samples: string[];
+    });
+    static from(entries: Iterable<readonly [string, readonly PathVisit[]]>): PathVisits;
+    get size(): number;
+    slot(segment: string): number;
+    pathIndex(path: string): number;
+    firstBy(slot: number, p: number): number;
+    replay(): (slot: number, p: number) => number;
+    filter(keepPath: (path: string) => boolean, keepSegment?: (segment: string) => boolean): PathVisits;
+    strand(i: number): '+' | '-';
+    visit(i: number): PathVisit;
+    private visitsAt;
+    get(segment: string): PathVisit[] | undefined;
+    has(segment: string): boolean;
+    keys(): ArrayIterator<string>;
+    values(): Generator<PathVisit[], void, unknown>;
+    entries(): Generator<[string, PathVisit[]]>;
+    [Symbol.iterator](): Generator<[string, PathVisit[]], any, any>;
+}
+/**
+ * Visits added in any order, grouped by segment on `build`, each segment's
+ * keeping the order they were added in
+ */
+export declare class PathVisitsBuilder {
+    private segments;
+    private slots;
+    private paths;
+    private samples;
+    private pathIndex;
+    private slot;
+    private path;
+    private start;
+    private reversed;
+    declare(segment: string): number;
+    pathOf(path: string, sample: string): number;
+    add(segment: string, path: string, sample: string, start: number, reversed: boolean): void;
+    addAt(slot: number, path: number, start: number, reversed: boolean): void;
+    build(): PathVisits;
+}

package/dist/types/types.d.ts

@@ -1,6 +1,7 @@
 import type { GafRecord } from './gaf/parseGaf.js';
 import type { StableCoordinate } from './gfa-core/index.js';
 import type { TubeMapDrawing } from './layout/tubeMapLayout.js';
+import type { PathVisits } from './pathVisits.js';
 export interface GraphNode {
     id: string;
     name: string;
@@ -43,7 +44,7 @@ export interface Graph {
     edges: GraphEdge[];
     paths?: GraphPath[];
     anchorPaths?: PathOrigin[];
-    pathVisits?: Map<string, PathVisit[]>;
+    pathVisits?: PathVisits;
     anchoredBy?: 'tags' | 'paths';
     referencePath?: string;
     reads?: GafRecord[];

package/dist/types/version.d.ts

@@ -1 +1 @@
-export declare const version = "9.10.0";
+export declare const version = "10.0.0";

package/dist/version.js

@@ -1,6 +1,6 @@
 import {
   version
-} from "./chunks/chunk-2VTM3DHG.js";
+} from "./chunks/chunk-CDPYXHVR.js";
 export {
   version
 };

package/dist/viewport.js

@@ -5,19 +5,20 @@ import {
   screenToLayout,
   viewportOf,
   zoomAbout
-} from "./chunks/chunk-PT37VS5B.js";
-import "./chunks/chunk-HRAU4VTB.js";
+} from "./chunks/chunk-OOLNLCIO.js";
+import "./chunks/chunk-W4GZCVUK.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-OPPVSPEF.js";
 import "./chunks/chunk-PUG7LXDF.js";
-import "./chunks/chunk-J7YKQ5YW.js";
-import "./chunks/chunk-G45YY72K.js";
-import "./chunks/chunk-OA7RIMZ2.js";
+import "./chunks/chunk-QXAB2FLJ.js";
 import "./chunks/chunk-QYBZZI5H.js";
+import "./chunks/chunk-PSMKPSO4.js";
 import "./chunks/chunk-CDLPYR5O.js";
 import "./chunks/chunk-JVLURPFW.js";
-import "./chunks/chunk-IGJCTPFB.js";
+import "./chunks/chunk-EMUUNWRU.js";
+import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";
+import "./chunks/chunk-G45YY72K.js";
 import "./chunks/chunk-BPLIXMH7.js";
 import "./chunks/chunk-TAMCZHLW.js";
 import "./chunks/chunk-UVBGRJQX.js";

package/dist/walkEncoding.js

@@ -9,13 +9,14 @@ import {
   schemeColor,
   schemeCss,
   schemeRgb
-} from "./chunks/chunk-KYY5363X.js";
-import "./chunks/chunk-4IYP43W6.js";
+} from "./chunks/chunk-VOWI544A.js";
+import "./chunks/chunk-NP356MC2.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-WFB5TXRA.js";
-import "./chunks/chunk-XZ2BLAA6.js";
+import "./chunks/chunk-REE4GUDM.js";
 import "./chunks/chunk-PBENCR5L.js";
-import "./chunks/chunk-IGJCTPFB.js";
+import "./chunks/chunk-EMUUNWRU.js";
+import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";
 import "./chunks/chunk-BPLIXMH7.js";
 import "./chunks/chunk-3ZZSX5HN.js";

package/dist/walkHighlight.js

@@ -2,14 +2,15 @@ import {
   facetLifts,
   walkHighlight,
   walkLift
-} from "./chunks/chunk-MVMP6AGI.js";
-import "./chunks/chunk-KYY5363X.js";
-import "./chunks/chunk-4IYP43W6.js";
+} from "./chunks/chunk-QIVPRZ4H.js";
+import "./chunks/chunk-VOWI544A.js";
+import "./chunks/chunk-NP356MC2.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-WFB5TXRA.js";
-import "./chunks/chunk-XZ2BLAA6.js";
+import "./chunks/chunk-REE4GUDM.js";
 import "./chunks/chunk-PBENCR5L.js";
-import "./chunks/chunk-IGJCTPFB.js";
+import "./chunks/chunk-EMUUNWRU.js";
+import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";
 import "./chunks/chunk-BPLIXMH7.js";
 import "./chunks/chunk-3ZZSX5HN.js";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/bandage-core",
-  "version": "9.10.0",
+  "version": "10.0.0",
   "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
   "license": "GPL-3.0-or-later",
   "repository": {