@jbrowse/bandage-core 9.1.0 → 9.2.0

package/dist/cli/figure.js

@@ -4,18 +4,26 @@ import {
   genesFromGff3Lines,
   genesFromText
 } from "../chunks/chunk-BXEPA4KS.js";
+import {
+  LAYOUT_ENGINE_VALUES,
+  isLayoutEngineKind,
+  layoutEngine
+} from "../chunks/chunk-6EJIU6IA.js";
+import "../chunks/chunk-UNOE2NDN.js";
+import "../chunks/chunk-LYJ4US66.js";
 import {
   LAYOUT_MODES,
   layoutModeByValue
-} from "../chunks/chunk-WNUZP3WQ.js";
+} from "../chunks/chunk-M7SRZJ32.js";
+import "../chunks/chunk-LOEA5IHZ.js";
 import "../chunks/chunk-INJ2UVOT.js";
 import "../chunks/chunk-CWFNEKST.js";
-import "../chunks/chunk-LOEA5IHZ.js";
 import "../chunks/chunk-L3O7AWLI.js";
 import "../chunks/chunk-TZFWUT2C.js";
 import "../chunks/chunk-C44YRP5F.js";
 import "../chunks/chunk-RVS2QCOX.js";
 import "../chunks/chunk-HNQPEMYE.js";
+import "../chunks/chunk-7XHHVYG7.js";
 import {
   HPRC_GBZ,
   cutGbzRegion,
@@ -25,43 +33,35 @@ import {
 } from "../chunks/chunk-73RSLGZT.js";
 import "../chunks/chunk-LTUWJKHD.js";
 import "../chunks/chunk-WSIFAZU7.js";
-import {
-  LAYOUT_ENGINE_VALUES,
-  isLayoutEngineKind,
-  layoutEngine
-} from "../chunks/chunk-6EJIU6IA.js";
-import "../chunks/chunk-UNOE2NDN.js";
-import "../chunks/chunk-LYJ4US66.js";
-import "../chunks/chunk-7XHHVYG7.js";
 import {
   figureSvg
-} from "../chunks/chunk-3TGUKQWQ.js";
+} from "../chunks/chunk-HOOVOF2Y.js";
+import "../chunks/chunk-UD5FOCI2.js";
+import "../chunks/chunk-WBCOREDZ.js";
+import "../chunks/chunk-4BYTEJGW.js";
 import "../chunks/chunk-LOCJN3BZ.js";
 import "../chunks/chunk-47DYCZOK.js";
-import "../chunks/chunk-WDTXW7T2.js";
 import {
   genesOnRow,
   placeRowGenes
-} from "../chunks/chunk-MIW3HYPE.js";
-import "../chunks/chunk-WBCOREDZ.js";
-import "../chunks/chunk-4BYTEJGW.js";
-import "../chunks/chunk-3S3YVOJ7.js";
+} from "../chunks/chunk-GFRPX6M2.js";
 import "../chunks/chunk-BUBZ32IC.js";
-import "../chunks/chunk-MBB7ATM6.js";
-import "../chunks/chunk-DPV2CUIE.js";
+import "../chunks/chunk-3S3YVOJ7.js";
+import "../chunks/chunk-XKM5OHQQ.js";
+import "../chunks/chunk-LFKMASER.js";
+import "../chunks/chunk-XPT66H6H.js";
 import "../chunks/chunk-2LQ5BWT7.js";
-import "../chunks/chunk-6ZNQJ5ZD.js";
-import "../chunks/chunk-HBEKUQO4.js";
+import "../chunks/chunk-OXTR3BVF.js";
+import "../chunks/chunk-BR25DGIJ.js";
 import "../chunks/chunk-G2FD7S3C.js";
-import "../chunks/chunk-UID3QBWH.js";
-import "../chunks/chunk-MXDQGA7A.js";
+import "../chunks/chunk-FM6XRXPX.js";
 import "../chunks/chunk-3C5UXR2U.js";
 import {
   filterSamples,
   walkRows
 } from "../chunks/chunk-MAUEPAMG.js";
-import "../chunks/chunk-PBENCR5L.js";
 import "../chunks/chunk-7GBL7SJY.js";
+import "../chunks/chunk-PBENCR5L.js";
 import {
   featuresOnBackbone,
   graphBackbone,
@@ -80,18 +80,18 @@ import {
   engineSettingsOf,
   forceLayout,
   loadGraph
-} from "../chunks/chunk-OOXIMURX.js";
+} from "../chunks/chunk-ZGRYFUXE.js";
 import "../chunks/chunk-PUG7LXDF.js";
 import "../chunks/chunk-IGVV37VI.js";
-import "../chunks/chunk-OA7RIMZ2.js";
 import "../chunks/chunk-OCMBULGN.js";
+import "../chunks/chunk-OA7RIMZ2.js";
 import "../chunks/chunk-QYBZZI5H.js";
 import "../chunks/chunk-CDLPYR5O.js";
+import "../chunks/chunk-JVLURPFW.js";
 import "../chunks/chunk-ES2N6V56.js";
 import "../chunks/chunk-ST2IBUAN.js";
 import "../chunks/chunk-BPLIXMH7.js";
 import "../chunks/chunk-TAMCZHLW.js";
-import "../chunks/chunk-JVLURPFW.js";
 import "../chunks/chunk-UVBGRJQX.js";
 import "../chunks/chunk-6JEWNXCQ.js";
 import "../chunks/chunk-N6FECAXP.js";

package/dist/cli/fold.js

@@ -0,0 +1,72 @@
+#!/usr/bin/env node
+import {
+  writeRgfa
+} from "../chunks/chunk-B4YH42OP.js";
+import {
+  foldVariants
+} from "../chunks/chunk-B4645SM2.js";
+import {
+  loadGraph
+} from "../chunks/chunk-ZGRYFUXE.js";
+import "../chunks/chunk-PUG7LXDF.js";
+import "../chunks/chunk-IGVV37VI.js";
+import "../chunks/chunk-OCMBULGN.js";
+import "../chunks/chunk-OA7RIMZ2.js";
+import "../chunks/chunk-QYBZZI5H.js";
+import "../chunks/chunk-CDLPYR5O.js";
+import "../chunks/chunk-JVLURPFW.js";
+import "../chunks/chunk-ES2N6V56.js";
+import "../chunks/chunk-ST2IBUAN.js";
+import "../chunks/chunk-BPLIXMH7.js";
+import "../chunks/chunk-TAMCZHLW.js";
+import "../chunks/chunk-UVBGRJQX.js";
+import "../chunks/chunk-6JEWNXCQ.js";
+import "../chunks/chunk-N6FECAXP.js";
+import "../chunks/chunk-2CVHXFK7.js";
+import "../chunks/chunk-CPMHA4W5.js";
+import "../chunks/chunk-FYQWPEEY.js";
+
+// src/cli/fold.ts
+import { readFile, writeFile } from "node:fs/promises";
+import { parseArgs } from "node:util";
+import { gunzipSync } from "node:zlib";
+var USAGE = "usage: bandage-fold <graph.gfa[.gz] | -> --below <bp> [-o out.gfa]";
+async function readInput(location) {
+  const bytes = await readFile(location === "-" ? "/dev/stdin" : location);
+  const gzipped = bytes[0] === 31 && bytes[1] === 139;
+  return new TextDecoder().decode(gzipped ? gunzipSync(bytes) : bytes);
+}
+async function main() {
+  const { values, positionals } = parseArgs({
+    allowPositionals: true,
+    options: {
+      below: { type: "string" },
+      out: { type: "string", short: "o" },
+      reference: { type: "string" }
+    }
+  });
+  const below = Number(values.below);
+  const input = positionals[0];
+  if (!input || !(below > 0)) {
+    throw new Error(USAGE);
+  }
+  const graph = loadGraph(await readInput(input), input, {
+    referencePath: values.reference
+  });
+  const folded = foldVariants({ ...graph, paths: void 0 }, below);
+  const text = writeRgfa(folded);
+  if (values.out) {
+    await writeFile(values.out, text);
+  } else {
+    process.stdout.write(text);
+  }
+  process.stderr.write(
+    `${graph.nodes.length} segments, ${graph.edges.length} links -> ${folded.nodes.length} segments, ${folded.edges.length} links
+`
+  );
+}
+main().catch((e) => {
+  process.stderr.write(`${e instanceof Error ? e.message : String(e)}
+`);
+  process.exit(1);
+});

package/dist/figure.js

@@ -1,26 +1,26 @@
 import {
   figureSvg
-} from "./chunks/chunk-3TGUKQWQ.js";
-import "./chunks/chunk-LOCJN3BZ.js";
-import "./chunks/chunk-47DYCZOK.js";
-import "./chunks/chunk-WDTXW7T2.js";
-import "./chunks/chunk-MIW3HYPE.js";
+} from "./chunks/chunk-HOOVOF2Y.js";
+import "./chunks/chunk-UD5FOCI2.js";
 import "./chunks/chunk-WBCOREDZ.js";
 import "./chunks/chunk-4BYTEJGW.js";
-import "./chunks/chunk-3S3YVOJ7.js";
+import "./chunks/chunk-LOCJN3BZ.js";
+import "./chunks/chunk-47DYCZOK.js";
+import "./chunks/chunk-GFRPX6M2.js";
 import "./chunks/chunk-BUBZ32IC.js";
-import "./chunks/chunk-MBB7ATM6.js";
-import "./chunks/chunk-DPV2CUIE.js";
+import "./chunks/chunk-3S3YVOJ7.js";
+import "./chunks/chunk-XKM5OHQQ.js";
+import "./chunks/chunk-LFKMASER.js";
+import "./chunks/chunk-XPT66H6H.js";
 import "./chunks/chunk-2LQ5BWT7.js";
-import "./chunks/chunk-6ZNQJ5ZD.js";
-import "./chunks/chunk-HBEKUQO4.js";
+import "./chunks/chunk-OXTR3BVF.js";
+import "./chunks/chunk-BR25DGIJ.js";
 import "./chunks/chunk-G2FD7S3C.js";
-import "./chunks/chunk-UID3QBWH.js";
-import "./chunks/chunk-MXDQGA7A.js";
+import "./chunks/chunk-FM6XRXPX.js";
 import "./chunks/chunk-3C5UXR2U.js";
 import "./chunks/chunk-MAUEPAMG.js";
-import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-7GBL7SJY.js";
+import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-RAKOB6IV.js";
 import "./chunks/chunk-GJMC3PGM.js";
 import "./chunks/chunk-FP4H7SFT.js";
@@ -31,18 +31,18 @@ import "./chunks/chunk-AB35TJST.js";
 import "./chunks/chunk-JKJWSY4V.js";
 import "./chunks/chunk-NNODIW4U.js";
 import "./chunks/chunk-XV4P5KEQ.js";
-import "./chunks/chunk-OOXIMURX.js";
+import "./chunks/chunk-ZGRYFUXE.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
-import "./chunks/chunk-OA7RIMZ2.js";
 import "./chunks/chunk-OCMBULGN.js";
+import "./chunks/chunk-OA7RIMZ2.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-CDLPYR5O.js";
+import "./chunks/chunk-JVLURPFW.js";
 import "./chunks/chunk-ES2N6V56.js";
 import "./chunks/chunk-ST2IBUAN.js";
 import "./chunks/chunk-BPLIXMH7.js";
 import "./chunks/chunk-TAMCZHLW.js";
-import "./chunks/chunk-JVLURPFW.js";
 import "./chunks/chunk-UVBGRJQX.js";
 import "./chunks/chunk-6JEWNXCQ.js";
 import "./chunks/chunk-N6FECAXP.js";

package/dist/figureSettings.js

@@ -1,19 +1,19 @@
 import {
   FIGURE_DEFAULTS,
   figureSpecSettings
-} from "./chunks/chunk-XLCTQHBE.js";
-import "./chunks/chunk-OOXIMURX.js";
+} from "./chunks/chunk-BLRJ6IGK.js";
+import "./chunks/chunk-ZGRYFUXE.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
-import "./chunks/chunk-OA7RIMZ2.js";
 import "./chunks/chunk-OCMBULGN.js";
+import "./chunks/chunk-OA7RIMZ2.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-CDLPYR5O.js";
+import "./chunks/chunk-JVLURPFW.js";
 import "./chunks/chunk-ES2N6V56.js";
 import "./chunks/chunk-ST2IBUAN.js";
 import "./chunks/chunk-BPLIXMH7.js";
 import "./chunks/chunk-TAMCZHLW.js";
-import "./chunks/chunk-JVLURPFW.js";
 import "./chunks/chunk-UVBGRJQX.js";
 import "./chunks/chunk-6JEWNXCQ.js";
 import "./chunks/chunk-N6FECAXP.js";

package/dist/foldVariants.js

@@ -0,0 +1,9 @@
+import {
+  foldVariants
+} from "./chunks/chunk-B4645SM2.js";
+import "./chunks/chunk-2CVHXFK7.js";
+import "./chunks/chunk-CPMHA4W5.js";
+import "./chunks/chunk-FYQWPEEY.js";
+export {
+  foldVariants
+};

package/dist/gfa/writeRgfa.js

@@ -0,0 +1,6 @@
+import {
+  writeRgfa
+} from "../chunks/chunk-B4YH42OP.js";
+export {
+  writeRgfa
+};

package/dist/index.js

@@ -1,6 +1,9 @@
 import {
   wheelZoomFactor
 } from "./chunks/chunk-TDQLINVI.js";
+import {
+  tubeMapNodeColors
+} from "./chunks/chunk-A4MYLGKG.js";
 import {
   connectorAt,
   drawLitConnector,
@@ -14,6 +17,7 @@ import {
   tubeMapPicture,
   tubeMapTrackAt
 } from "./chunks/chunk-75HR3756.js";
+import "./chunks/chunk-XXT2JCAC.js";
 import {
   tubeMapFrame,
   tubeMapNodeAt
@@ -26,10 +30,6 @@ import {
   drawTubeMapGenes,
   tubeMapGenes
 } from "./chunks/chunk-WEDZ76AK.js";
-import "./chunks/chunk-XXT2JCAC.js";
-import {
-  tubeMapNodeColors
-} from "./chunks/chunk-FFFQNQUI.js";
 import {
   drawTubeMapRuler,
   referenceBoxes,
@@ -38,11 +38,11 @@ import {
 } from "./chunks/chunk-BPRXQ2SS.js";
 import {
   createForceLayoutCache
-} from "./chunks/chunk-RRZMMYBG.js";
+} from "./chunks/chunk-BV64PQ2C.js";
 import {
   graphBubbles,
   superbubblesFromGraph
-} from "./chunks/chunk-FUVI4WQP.js";
+} from "./chunks/chunk-ZDJDM77V.js";
 import {
   bubbleSubgraph
 } from "./chunks/chunk-VHW7FDHU.js";
@@ -55,31 +55,39 @@ import {
 import {
   bubbleHalos
 } from "./chunks/chunk-2AWUWGAD.js";
-import {
-  bubblesFromGraph
-} from "./chunks/chunk-GOZYKNQ2.js";
 import {
   BUBBLE_KIND_COLORS,
   BUBBLE_KIND_NAMES,
   bubbleSegmentIds,
   classifyBubble
 } from "./chunks/chunk-XKWD2RY3.js";
+import {
+  bubblesFromGraph
+} from "./chunks/chunk-GOZYKNQ2.js";
 import "./chunks/chunk-FX4RDMDN.js";
 import {
   REFERENCE_STRIP_ZONE_PX,
   drawReferenceStrip,
   referenceStripBlocks,
   stripBlockAt
-} from "./chunks/chunk-W253V6RR.js";
+} from "./chunks/chunk-CVYDR2OP.js";
+import {
+  LAYOUT_ENGINES,
+  layoutEngine
+} from "./chunks/chunk-6EJIU6IA.js";
+import {
+  stressLayout
+} from "./chunks/chunk-UNOE2NDN.js";
+import "./chunks/chunk-LYJ4US66.js";
 import {
   FORCE_LAYOUT_LABEL,
   LAYOUT_MODES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-WNUZP3WQ.js";
+} from "./chunks/chunk-M7SRZJ32.js";
+import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-INJ2UVOT.js";
 import "./chunks/chunk-CWFNEKST.js";
-import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-L3O7AWLI.js";
 import "./chunks/chunk-TZFWUT2C.js";
 import "./chunks/chunk-C44YRP5F.js";
@@ -88,6 +96,9 @@ import "./chunks/chunk-HNQPEMYE.js";
 import {
   LAYOUT_QUALITIES
 } from "./chunks/chunk-K5SIJGAE.js";
+import {
+  loadBandage
+} from "./chunks/chunk-7XHHVYG7.js";
 import {
   HPRC_GBZ,
   cutGbzRegion,
@@ -106,26 +117,9 @@ import {
   edgeHoverText,
   regionLabel
 } from "./chunks/chunk-AZFVORTC.js";
-import {
-  LAYOUT_ENGINES,
-  layoutEngine
-} from "./chunks/chunk-6EJIU6IA.js";
-import {
-  stressLayout
-} from "./chunks/chunk-UNOE2NDN.js";
-import "./chunks/chunk-LYJ4US66.js";
-import {
-  loadBandage
-} from "./chunks/chunk-7XHHVYG7.js";
 import {
   figureSvg
-} from "./chunks/chunk-3TGUKQWQ.js";
-import {
-  layoutGeometryInputs
-} from "./chunks/chunk-LOCJN3BZ.js";
-import {
-  svgCanvas
-} from "./chunks/chunk-47DYCZOK.js";
+} from "./chunks/chunk-HOOVOF2Y.js";
 import {
   WALK_STRIP_CEILING_PX,
   cutsWholeWalks,
@@ -137,7 +131,19 @@ import {
   walkStripApplies,
   walkStripFrame,
   walkStripLabelsTree
-} from "./chunks/chunk-WDTXW7T2.js";
+} from "./chunks/chunk-UD5FOCI2.js";
+import {
+  Canvas2DRenderer
+} from "./chunks/chunk-WBCOREDZ.js";
+import {
+  getDpr
+} from "./chunks/chunk-4BYTEJGW.js";
+import {
+  layoutGeometryInputs
+} from "./chunks/chunk-LOCJN3BZ.js";
+import {
+  svgCanvas
+} from "./chunks/chunk-47DYCZOK.js";
 import {
   BAR_PX,
   CALL_TICK,
@@ -164,26 +170,28 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "./chunks/chunk-MIW3HYPE.js";
-import {
-  Canvas2DRenderer
-} from "./chunks/chunk-WBCOREDZ.js";
+} from "./chunks/chunk-GFRPX6M2.js";
 import {
-  getDpr
-} from "./chunks/chunk-4BYTEJGW.js";
+  genePins
+} from "./chunks/chunk-BUBZ32IC.js";
 import {
   EXON_COLOR,
   exonOutlineTree,
   exonStretches
 } from "./chunks/chunk-3S3YVOJ7.js";
 import {
-  genePins
-} from "./chunks/chunk-BUBZ32IC.js";
+  axisScaleOf,
+  contains,
+  padded,
+  screenToLayout,
+  viewportOf,
+  zoomAbout
+} from "./chunks/chunk-XKM5OHQQ.js";
 import {
   facetLifts,
   walkHighlight,
   walkLift
-} from "./chunks/chunk-MBB7ATM6.js";
+} from "./chunks/chunk-LFKMASER.js";
 import {
   WALK_FIELDS,
   WALK_SCHEMES,
@@ -191,7 +199,7 @@ import {
   encodingSwatchCss,
   resolveEncoding,
   schemeCss
-} from "./chunks/chunk-DPV2CUIE.js";
+} from "./chunks/chunk-XPT66H6H.js";
 import {
   rangeText,
   walkKey,
@@ -202,24 +210,16 @@ import {
   rampHue,
   rampHueCss,
   rampStops
-} from "./chunks/chunk-6ZNQJ5ZD.js";
+} from "./chunks/chunk-OXTR3BVF.js";
 import {
   REFERENCE_RAMP_MAX_HUE,
   buildGeometry,
   computeReferenceRamp
-} from "./chunks/chunk-HBEKUQO4.js";
+} from "./chunks/chunk-BR25DGIJ.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import {
   version
-} from "./chunks/chunk-UID3QBWH.js";
-import {
-  axisScaleOf,
-  contains,
-  padded,
-  screenToLayout,
-  viewportOf,
-  zoomAbout
-} from "./chunks/chunk-MXDQGA7A.js";
+} from "./chunks/chunk-FM6XRXPX.js";
 import {
   walkRowLabels,
   walkRowsExtent
@@ -228,6 +228,11 @@ import {
   filterSamples,
   walkRows
 } from "./chunks/chunk-MAUEPAMG.js";
+import {
+  pathColorsLegible,
+  pathLegend,
+  walkLabelsOf
+} from "./chunks/chunk-7GBL7SJY.js";
 import {
   NODE_WIDTHS,
   maxNodeWidthPx,
@@ -235,11 +240,6 @@ import {
   nodeInk,
   nodeWidthPx
 } from "./chunks/chunk-PBENCR5L.js";
-import {
-  pathColorsLegible,
-  pathLegend,
-  walkLabelsOf
-} from "./chunks/chunk-7GBL7SJY.js";
 import {
   WELL_KNOWN_SAMPLES,
   assemblyWalk,
@@ -290,7 +290,7 @@ import {
 import {
   FIGURE_DEFAULTS,
   figureSpecSettings
-} from "./chunks/chunk-XLCTQHBE.js";
+} from "./chunks/chunk-BLRJ6IGK.js";
 import {
   ENGINE_DEFAULTS,
   FIT_PADDING,
@@ -303,16 +303,17 @@ import {
   forceLayout,
   layoutExtent,
   loadGraph
-} from "./chunks/chunk-OOXIMURX.js";
+} from "./chunks/chunk-ZGRYFUXE.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
+import "./chunks/chunk-OCMBULGN.js";
 import {
   graphFromTables,
   graphTablesGFA
 } from "./chunks/chunk-OA7RIMZ2.js";
-import "./chunks/chunk-OCMBULGN.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-CDLPYR5O.js";
+import "./chunks/chunk-JVLURPFW.js";
 import "./chunks/chunk-ES2N6V56.js";
 import "./chunks/chunk-ST2IBUAN.js";
 import {
@@ -321,7 +322,6 @@ import {
   panSNSample
 } from "./chunks/chunk-BPLIXMH7.js";
 import "./chunks/chunk-TAMCZHLW.js";
-import "./chunks/chunk-JVLURPFW.js";
 import {
   BUBBLE_SPREADS
 } from "./chunks/chunk-UVBGRJQX.js";

package/dist/layout/forceCache.js

@@ -1,18 +1,18 @@
 import {
   createForceLayoutCache
-} from "../chunks/chunk-RRZMMYBG.js";
-import "../chunks/chunk-OOXIMURX.js";
+} from "../chunks/chunk-BV64PQ2C.js";
+import "../chunks/chunk-ZGRYFUXE.js";
 import "../chunks/chunk-PUG7LXDF.js";
 import "../chunks/chunk-IGVV37VI.js";
-import "../chunks/chunk-OA7RIMZ2.js";
 import "../chunks/chunk-OCMBULGN.js";
+import "../chunks/chunk-OA7RIMZ2.js";
 import "../chunks/chunk-QYBZZI5H.js";
 import "../chunks/chunk-CDLPYR5O.js";
+import "../chunks/chunk-JVLURPFW.js";
 import "../chunks/chunk-ES2N6V56.js";
 import "../chunks/chunk-ST2IBUAN.js";
 import "../chunks/chunk-BPLIXMH7.js";
 import "../chunks/chunk-TAMCZHLW.js";
-import "../chunks/chunk-JVLURPFW.js";
 import "../chunks/chunk-UVBGRJQX.js";
 import "../chunks/chunk-6JEWNXCQ.js";
 import "../chunks/chunk-N6FECAXP.js";

package/dist/layout/trimToWindow.js

@@ -94,6 +94,19 @@ function trimVisits(visits, paths, spans, nameOf) {
   });
   return out;
 }
+function clipToWindow(graph, window, reachBp) {
+  const nodes = graph.nodes.map((node) => {
+    if (!isBackbone(node)) {
+      return node;
+    }
+    const from = node.stable.start;
+    const to = from + node.length;
+    const [start, end] = overlapsWindow(node, window) ? [Math.max(from, window.start), Math.min(to, window.end)] : to <= window.start ? [Math.max(from, to - reachBp), to] : [from, Math.min(to, from + reachBp)];
+    return start === from && end === to ? node : { ...node, length: end - start, stable: { ...node.stable, start } };
+  });
+  return nodes.some((node, i) => node !== graph.nodes[i]) ? { ...graph, nodes } : graph;
+}
 export {
+  clipToWindow,
   trimToWindow
 };

package/dist/layout/walkRowDraw.js

@@ -26,12 +26,12 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "../chunks/chunk-MIW3HYPE.js";
-import "../chunks/chunk-6ZNQJ5ZD.js";
-import "../chunks/chunk-HBEKUQO4.js";
+} from "../chunks/chunk-GFRPX6M2.js";
+import "../chunks/chunk-OXTR3BVF.js";
+import "../chunks/chunk-BR25DGIJ.js";
 import "../chunks/chunk-G2FD7S3C.js";
-import "../chunks/chunk-PBENCR5L.js";
 import "../chunks/chunk-7GBL7SJY.js";
+import "../chunks/chunk-PBENCR5L.js";
 import "../chunks/chunk-WFB5TXRA.js";
 import "../chunks/chunk-3ZZSX5HN.js";
 import "../chunks/chunk-AB35TJST.js";

package/dist/layout/walkStrip.js

@@ -9,15 +9,15 @@ import {
   walkStripApplies,
   walkStripFrame,
   walkStripLabelsTree
-} from "../chunks/chunk-WDTXW7T2.js";
+} from "../chunks/chunk-UD5FOCI2.js";
 import {
   LABELLED_ROW_PX
-} from "../chunks/chunk-MIW3HYPE.js";
-import "../chunks/chunk-6ZNQJ5ZD.js";
-import "../chunks/chunk-HBEKUQO4.js";
+} from "../chunks/chunk-GFRPX6M2.js";
+import "../chunks/chunk-OXTR3BVF.js";
+import "../chunks/chunk-BR25DGIJ.js";
 import "../chunks/chunk-G2FD7S3C.js";
-import "../chunks/chunk-PBENCR5L.js";
 import "../chunks/chunk-7GBL7SJY.js";
+import "../chunks/chunk-PBENCR5L.js";
 import "../chunks/chunk-WFB5TXRA.js";
 import "../chunks/chunk-3ZZSX5HN.js";
 import "../chunks/chunk-AB35TJST.js";

package/dist/layoutModes.js

@@ -4,10 +4,10 @@ import {
   LAYOUT_MODE_VALUES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-WNUZP3WQ.js";
+} from "./chunks/chunk-M7SRZJ32.js";
+import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-INJ2UVOT.js";
 import "./chunks/chunk-CWFNEKST.js";
-import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-L3O7AWLI.js";
 import "./chunks/chunk-TZFWUT2C.js";
 import "./chunks/chunk-C44YRP5F.js";