@jbrowse/bandage-core 8.0.0 → 8.0.1

package/README.md

@@ -53,4 +53,6 @@ Release with `pnpm version patch`: it lints, tests, stamps `src/version.ts`,
 writes the changelog with git-cliff and pushes the `v*` tag, and `publish.yml`
 publishes to npm with trusted publishing.
 
+## License
+
 Both Bandage and OGDF are GPL, which is why this package is GPL-3.0-or-later.

package/dist/chunks/{chunk-CH3DLBUT.js → chunk-2WNBVB55.js}

@@ -5,7 +5,7 @@ import {
   abgrToCssRgba,
   brightenAbgr,
   normalizedRgbToCssRgba
-} from "./chunk-UMNCCYBN.js";
+} from "./chunk-G2FD7S3C.js";
 
 // src/renderer/Canvas2DRenderer.ts
 var Canvas2DRenderer = class {

package/dist/chunks/{chunk-AVJK272H.js → chunk-6ZNQJ5ZD.js}

@@ -1,6 +1,6 @@
 import {
   REFERENCE_RAMP_MAX_HUE
-} from "./chunk-RCWYY6XA.js";
+} from "./chunk-HBEKUQO4.js";
 
 // src/referenceRampCss.ts
 function rampHueCss(hue) {

package/dist/chunks/{chunk-ZNMHIPUZ.js → chunk-DPV2CUIE.js}

@@ -2,10 +2,10 @@ import {
   REFERENCE_RAMP_ALT_COLOR,
   REFERENCE_RAMP_MAX_HUE,
   hslToRgb
-} from "./chunk-RCWYY6XA.js";
+} from "./chunk-HBEKUQO4.js";
 import {
   packAbgr
-} from "./chunk-UMNCCYBN.js";
+} from "./chunk-G2FD7S3C.js";
 
 // src/walkEncoding.ts
 var WALK_FIELDS = [

package/dist/chunks/{chunk-KEVQ46GG.js → chunk-FFFQNQUI.js}

@@ -1,10 +1,10 @@
 import {
   computeColorSchemeRange,
   getNodeColor
-} from "./chunk-RCWYY6XA.js";
+} from "./chunk-HBEKUQO4.js";
 import {
   abgrToCssRgba
-} from "./chunk-UMNCCYBN.js";
+} from "./chunk-G2FD7S3C.js";
 
 // src/tubeMap/nodeColors.ts
 function tubeMapNodeColors(graph, colorScheme, referenceRamp) {

package/dist/chunks/{chunk-UMNCCYBN.js → chunk-G2FD7S3C.js}

@@ -29,10 +29,12 @@ function fadeAbgr(c, alpha) {
   );
 }
 function brightenAbgr(c, factor) {
+  const t = Math.max(0, 1 - 1 / factor);
+  const lift = (v) => Math.round(v + (255 - v) * t);
   return packAbgr(
-    Math.min(255, Math.round(abgrRed(c) * factor)),
-    Math.min(255, Math.round(abgrGreen(c) * factor)),
-    Math.min(255, Math.round(abgrBlue(c) * factor)),
+    lift(abgrRed(c)),
+    lift(abgrGreen(c)),
+    lift(abgrBlue(c)),
     abgrAlpha(c)
   );
 }

package/dist/chunks/{chunk-RCWYY6XA.js → chunk-HBEKUQO4.js}

@@ -2,7 +2,7 @@ import {
   abgrToCssRgba,
   fadeAbgr,
   packAbgr
-} from "./chunk-UMNCCYBN.js";
+} from "./chunk-G2FD7S3C.js";
 import {
   meanDepth,
   nodeWidthPx

package/dist/chunks/{chunk-3LXG54PN.js → chunk-MBB7ATM6.js}

@@ -1,7 +1,7 @@
 import {
   encodedColor,
   resolveEncoding
-} from "./chunk-ZNMHIPUZ.js";
+} from "./chunk-DPV2CUIE.js";
 import {
   pathOrigin
 } from "./chunk-ST2IBUAN.js";

package/dist/chunks/{chunk-5ARDFGLJ.js → chunk-MRZ7CFBN.js}

@@ -8,15 +8,15 @@ import {
   stripGeneGaps,
   walkStripFrame,
   walkStripLabelsTree
-} from "./chunk-ZYHSUNQO.js";
+} from "./chunk-O2ANJQVH.js";
 import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "./chunk-7G7TFATC.js";
+} from "./chunk-V3MD3IZB.js";
 import {
   Canvas2DRenderer
-} from "./chunk-CH3DLBUT.js";
+} from "./chunk-2WNBVB55.js";
 import {
   EXON_COLOR,
   exonOutlineTree,
@@ -28,10 +28,10 @@ import {
 import {
   facetLifts,
   walkLift
-} from "./chunk-3LXG54PN.js";
+} from "./chunk-MBB7ATM6.js";
 import {
   encodingStops
-} from "./chunk-ZNMHIPUZ.js";
+} from "./chunk-DPV2CUIE.js";
 import {
   rangeText,
   walkKey
@@ -39,10 +39,10 @@ import {
 import {
   buildGeometry,
   computeReferenceRamp
-} from "./chunk-RCWYY6XA.js";
+} from "./chunk-HBEKUQO4.js";
 import {
   version
-} from "./chunk-XMNHWMGM.js";
+} from "./chunk-V5W5E3UN.js";
 import {
   axisScaleOf
 } from "./chunk-4UBWXZVX.js";

package/dist/chunks/{chunk-ZYHSUNQO.js → chunk-O2ANJQVH.js}

@@ -2,7 +2,7 @@ import {
   alongRow,
   boxesGenes,
   rowPitch
-} from "./chunk-7G7TFATC.js";
+} from "./chunk-V3MD3IZB.js";
 import {
   LABEL_CHAR_PX
 } from "./chunk-AB35TJST.js";

package/dist/chunks/{chunk-7G7TFATC.js → chunk-V3MD3IZB.js}

@@ -3,10 +3,10 @@ import {
   RAMP_GRADIENT_STOPS,
   rampHueCss,
   rampStops
-} from "./chunk-AVJK272H.js";
+} from "./chunk-6ZNQJ5ZD.js";
 import {
   REFERENCE_RAMP_ALT_CSS
-} from "./chunk-RCWYY6XA.js";
+} from "./chunk-HBEKUQO4.js";
 import {
   LABEL_CHAR_PX
 } from "./chunk-AB35TJST.js";

package/dist/chunks/{chunk-XMNHWMGM.js → chunk-V5W5E3UN.js}

@@ -1,5 +1,5 @@
 // src/version.ts
-var version = "8.0.0";
+var version = "8.0.1";
 
 export {
   version

package/dist/chunks/{chunk-UJ6GYL6T.js → chunk-W253V6RR.js}

@@ -2,10 +2,10 @@ import {
   LIFT_BACKDROP_CSS,
   computeColorSchemeRange,
   getNodeColor
-} from "./chunk-RCWYY6XA.js";
+} from "./chunk-HBEKUQO4.js";
 import {
   abgrToCssRgba
-} from "./chunk-UMNCCYBN.js";
+} from "./chunk-G2FD7S3C.js";
 import {
   isBackbone
 } from "./chunk-FYQWPEEY.js";

package/dist/cli/figure.js

@@ -35,25 +35,25 @@ import "../chunks/chunk-LYJ4US66.js";
 import "../chunks/chunk-7XHHVYG7.js";
 import {
   figureSvg
-} from "../chunks/chunk-5ARDFGLJ.js";
+} from "../chunks/chunk-MRZ7CFBN.js";
 import "../chunks/chunk-LOCJN3BZ.js";
 import "../chunks/chunk-47DYCZOK.js";
-import "../chunks/chunk-ZYHSUNQO.js";
+import "../chunks/chunk-O2ANJQVH.js";
 import {
   genesOnRow,
   placeRowGenes
-} from "../chunks/chunk-7G7TFATC.js";
-import "../chunks/chunk-CH3DLBUT.js";
+} from "../chunks/chunk-V3MD3IZB.js";
+import "../chunks/chunk-2WNBVB55.js";
 import "../chunks/chunk-4BYTEJGW.js";
 import "../chunks/chunk-3S3YVOJ7.js";
 import "../chunks/chunk-BUBZ32IC.js";
-import "../chunks/chunk-3LXG54PN.js";
-import "../chunks/chunk-ZNMHIPUZ.js";
+import "../chunks/chunk-MBB7ATM6.js";
+import "../chunks/chunk-DPV2CUIE.js";
 import "../chunks/chunk-2LQ5BWT7.js";
-import "../chunks/chunk-AVJK272H.js";
-import "../chunks/chunk-RCWYY6XA.js";
-import "../chunks/chunk-UMNCCYBN.js";
-import "../chunks/chunk-XMNHWMGM.js";
+import "../chunks/chunk-6ZNQJ5ZD.js";
+import "../chunks/chunk-HBEKUQO4.js";
+import "../chunks/chunk-G2FD7S3C.js";
+import "../chunks/chunk-V5W5E3UN.js";
 import "../chunks/chunk-4UBWXZVX.js";
 import "../chunks/chunk-MP7LXLWV.js";
 import {

package/dist/figure.js

@@ -1,21 +1,21 @@
 import {
   figureSvg
-} from "./chunks/chunk-5ARDFGLJ.js";
+} from "./chunks/chunk-MRZ7CFBN.js";
 import "./chunks/chunk-LOCJN3BZ.js";
 import "./chunks/chunk-47DYCZOK.js";
-import "./chunks/chunk-ZYHSUNQO.js";
-import "./chunks/chunk-7G7TFATC.js";
-import "./chunks/chunk-CH3DLBUT.js";
+import "./chunks/chunk-O2ANJQVH.js";
+import "./chunks/chunk-V3MD3IZB.js";
+import "./chunks/chunk-2WNBVB55.js";
 import "./chunks/chunk-4BYTEJGW.js";
 import "./chunks/chunk-3S3YVOJ7.js";
 import "./chunks/chunk-BUBZ32IC.js";
-import "./chunks/chunk-3LXG54PN.js";
-import "./chunks/chunk-ZNMHIPUZ.js";
+import "./chunks/chunk-MBB7ATM6.js";
+import "./chunks/chunk-DPV2CUIE.js";
 import "./chunks/chunk-2LQ5BWT7.js";
-import "./chunks/chunk-AVJK272H.js";
-import "./chunks/chunk-RCWYY6XA.js";
-import "./chunks/chunk-UMNCCYBN.js";
-import "./chunks/chunk-XMNHWMGM.js";
+import "./chunks/chunk-6ZNQJ5ZD.js";
+import "./chunks/chunk-HBEKUQO4.js";
+import "./chunks/chunk-G2FD7S3C.js";
+import "./chunks/chunk-V5W5E3UN.js";
 import "./chunks/chunk-4UBWXZVX.js";
 import "./chunks/chunk-MP7LXLWV.js";
 import "./chunks/chunk-SZNZ2T6D.js";

package/dist/index.js

@@ -16,7 +16,7 @@ import {
 import "./chunks/chunk-733L2TS6.js";
 import {
   tubeMapNodeColors
-} from "./chunks/chunk-KEVQ46GG.js";
+} from "./chunks/chunk-FFFQNQUI.js";
 import {
   referenceKnots,
   warpX
@@ -63,7 +63,7 @@ import {
   drawReferenceStrip,
   referenceStripBlocks,
   stripBlockAt
-} from "./chunks/chunk-UJ6GYL6T.js";
+} from "./chunks/chunk-W253V6RR.js";
 import {
   FORCE_LAYOUT_LABEL,
   LAYOUT_MODES,
@@ -112,7 +112,7 @@ import {
 } from "./chunks/chunk-7XHHVYG7.js";
 import {
   figureSvg
-} from "./chunks/chunk-5ARDFGLJ.js";
+} from "./chunks/chunk-MRZ7CFBN.js";
 import {
   layoutGeometryInputs
 } from "./chunks/chunk-LOCJN3BZ.js";
@@ -130,7 +130,7 @@ import {
   walkStripApplies,
   walkStripFrame,
   walkStripLabelsTree
-} from "./chunks/chunk-ZYHSUNQO.js";
+} from "./chunks/chunk-O2ANJQVH.js";
 import {
   BAR_PX,
   CALL_TICK,
@@ -157,10 +157,10 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "./chunks/chunk-7G7TFATC.js";
+} from "./chunks/chunk-V3MD3IZB.js";
 import {
   Canvas2DRenderer
-} from "./chunks/chunk-CH3DLBUT.js";
+} from "./chunks/chunk-2WNBVB55.js";
 import {
   getDpr
 } from "./chunks/chunk-4BYTEJGW.js";
@@ -176,7 +176,7 @@ import {
   facetLifts,
   walkHighlight,
   walkLift
-} from "./chunks/chunk-3LXG54PN.js";
+} from "./chunks/chunk-MBB7ATM6.js";
 import {
   WALK_FIELDS,
   WALK_SCHEMES,
@@ -184,7 +184,7 @@ import {
   encodingSwatchCss,
   resolveEncoding,
   schemeCss
-} from "./chunks/chunk-ZNMHIPUZ.js";
+} from "./chunks/chunk-DPV2CUIE.js";
 import {
   rangeText,
   walkKey,
@@ -195,16 +195,16 @@ import {
   rampHue,
   rampHueCss,
   rampStops
-} from "./chunks/chunk-AVJK272H.js";
+} from "./chunks/chunk-6ZNQJ5ZD.js";
 import {
   REFERENCE_RAMP_MAX_HUE,
   buildGeometry,
   computeReferenceRamp
-} from "./chunks/chunk-RCWYY6XA.js";
-import "./chunks/chunk-UMNCCYBN.js";
+} from "./chunks/chunk-HBEKUQO4.js";
+import "./chunks/chunk-G2FD7S3C.js";
 import {
   version
-} from "./chunks/chunk-XMNHWMGM.js";
+} from "./chunks/chunk-V5W5E3UN.js";
 import {
   axisScaleOf,
   contains,

package/dist/layout/walkRowDraw.js

@@ -26,10 +26,10 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "../chunks/chunk-7G7TFATC.js";
-import "../chunks/chunk-AVJK272H.js";
-import "../chunks/chunk-RCWYY6XA.js";
-import "../chunks/chunk-UMNCCYBN.js";
+} from "../chunks/chunk-V3MD3IZB.js";
+import "../chunks/chunk-6ZNQJ5ZD.js";
+import "../chunks/chunk-HBEKUQO4.js";
+import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-PBENCR5L.js";
 import "../chunks/chunk-7GBL7SJY.js";
 import "../chunks/chunk-WFB5TXRA.js";

package/dist/layout/walkStrip.js

@@ -9,13 +9,13 @@ import {
   walkStripApplies,
   walkStripFrame,
   walkStripLabelsTree
-} from "../chunks/chunk-ZYHSUNQO.js";
+} from "../chunks/chunk-O2ANJQVH.js";
 import {
   LABELLED_ROW_PX
-} from "../chunks/chunk-7G7TFATC.js";
-import "../chunks/chunk-AVJK272H.js";
-import "../chunks/chunk-RCWYY6XA.js";
-import "../chunks/chunk-UMNCCYBN.js";
+} from "../chunks/chunk-V3MD3IZB.js";
+import "../chunks/chunk-6ZNQJ5ZD.js";
+import "../chunks/chunk-HBEKUQO4.js";
+import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-PBENCR5L.js";
 import "../chunks/chunk-7GBL7SJY.js";
 import "../chunks/chunk-WFB5TXRA.js";

package/dist/referenceRampCss.js

@@ -4,9 +4,9 @@ import {
   rampHue,
   rampHueCss,
   rampStops
-} from "./chunks/chunk-AVJK272H.js";
-import "./chunks/chunk-RCWYY6XA.js";
-import "./chunks/chunk-UMNCCYBN.js";
+} from "./chunks/chunk-6ZNQJ5ZD.js";
+import "./chunks/chunk-HBEKUQO4.js";
+import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-7GBL7SJY.js";
 import "./chunks/chunk-WFB5TXRA.js";

package/dist/referenceStrip.js

@@ -7,9 +7,9 @@ import {
   stripBlockAt,
   stripOverhang,
   stripPixels
-} from "./chunks/chunk-UJ6GYL6T.js";
-import "./chunks/chunk-RCWYY6XA.js";
-import "./chunks/chunk-UMNCCYBN.js";
+} from "./chunks/chunk-W253V6RR.js";
+import "./chunks/chunk-HBEKUQO4.js";
+import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-7GBL7SJY.js";
 import "./chunks/chunk-WFB5TXRA.js";

package/dist/renderer/Canvas2DRenderer.js

@@ -1,9 +1,9 @@
 import {
   Canvas2DRenderer,
   arrowheadOutline
-} from "../chunks/chunk-CH3DLBUT.js";
+} from "../chunks/chunk-2WNBVB55.js";
 import "../chunks/chunk-4BYTEJGW.js";
-import "../chunks/chunk-UMNCCYBN.js";
+import "../chunks/chunk-G2FD7S3C.js";
 export {
   Canvas2DRenderer,
   arrowheadOutline

package/dist/renderer/GeometryBuilder.js

@@ -11,8 +11,8 @@ import {
   endTangent,
   getNodeColor,
   hslToRgb
-} from "../chunks/chunk-RCWYY6XA.js";
-import "../chunks/chunk-UMNCCYBN.js";
+} from "../chunks/chunk-HBEKUQO4.js";
+import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-PBENCR5L.js";
 import "../chunks/chunk-7GBL7SJY.js";
 import "../chunks/chunk-WFB5TXRA.js";

package/dist/renderer/colorBits.js

@@ -8,7 +8,7 @@ import {
   fadeAbgr,
   normalizedRgbToCssRgba,
   packAbgr
-} from "../chunks/chunk-UMNCCYBN.js";
+} from "../chunks/chunk-G2FD7S3C.js";
 export {
   abgrAlpha,
   abgrBlue,

package/dist/tubeMap/nodeColors.js

@@ -1,8 +1,8 @@
 import {
   tubeMapNodeColors
-} from "../chunks/chunk-KEVQ46GG.js";
-import "../chunks/chunk-RCWYY6XA.js";
-import "../chunks/chunk-UMNCCYBN.js";
+} from "../chunks/chunk-FFFQNQUI.js";
+import "../chunks/chunk-HBEKUQO4.js";
+import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-PBENCR5L.js";
 import "../chunks/chunk-7GBL7SJY.js";
 import "../chunks/chunk-WFB5TXRA.js";

package/dist/types/version.d.ts

@@ -1 +1 @@
-export declare const version = "8.0.0";
+export declare const version = "8.0.1";

package/dist/version.js

@@ -1,6 +1,6 @@
 import {
   version
-} from "./chunks/chunk-XMNHWMGM.js";
+} from "./chunks/chunk-V5W5E3UN.js";
 export {
   version
 };

package/dist/walkEncoding.js

@@ -9,9 +9,9 @@ import {
   schemeColor,
   schemeCss,
   schemeRgb
-} from "./chunks/chunk-ZNMHIPUZ.js";
-import "./chunks/chunk-RCWYY6XA.js";
-import "./chunks/chunk-UMNCCYBN.js";
+} from "./chunks/chunk-DPV2CUIE.js";
+import "./chunks/chunk-HBEKUQO4.js";
+import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-7GBL7SJY.js";
 import "./chunks/chunk-WFB5TXRA.js";

package/dist/walkHighlight.js

@@ -2,10 +2,10 @@ import {
   facetLifts,
   walkHighlight,
   walkLift
-} from "./chunks/chunk-3LXG54PN.js";
-import "./chunks/chunk-ZNMHIPUZ.js";
-import "./chunks/chunk-RCWYY6XA.js";
-import "./chunks/chunk-UMNCCYBN.js";
+} from "./chunks/chunk-MBB7ATM6.js";
+import "./chunks/chunk-DPV2CUIE.js";
+import "./chunks/chunk-HBEKUQO4.js";
+import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-PBENCR5L.js";
 import "./chunks/chunk-7GBL7SJY.js";
 import "./chunks/chunk-WFB5TXRA.js";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/bandage-core",
-  "version": "8.0.0",
+  "version": "8.0.1",
   "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
   "license": "GPL-3.0-or-later",
   "repository": {