@jbrowse/bandage-core 7.3.0 → 7.5.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/chunks/{chunk-ERHAGG72.js → chunk-2PEBQ5VA.js} +1 -1
- package/dist/chunks/{chunk-36UKA6RQ.js → chunk-3LXG54PN.js} +1 -1
- package/dist/chunks/{chunk-AGJZ5RDC.js → chunk-4UBWXZVX.js} +1 -1
- package/dist/chunks/{chunk-RCPGXIWA.js → chunk-7G7TFATC.js} +2 -2
- package/dist/chunks/{chunk-Z3OHBOEA.js → chunk-AVJK272H.js} +1 -1
- package/dist/chunks/chunk-AZFVORTC.js +19 -0
- package/dist/chunks/{chunk-IW6K4VHZ.js → chunk-FRR2RGBT.js} +1 -1
- package/dist/chunks/{chunk-45J7P6YW.js → chunk-GYTQK5PR.js} +34 -39
- package/dist/chunks/{chunk-CBBDB3UC.js → chunk-H5S2ONCJ.js} +1 -1
- package/dist/chunks/{chunk-O7QXUXGZ.js → chunk-KEVQ46GG.js} +1 -1
- package/dist/chunks/chunk-LOCJN3BZ.js +14 -0
- package/dist/chunks/{chunk-3JANT2SW.js → chunk-MP7LXLWV.js} +13 -0
- package/dist/chunks/{chunk-5N5YRRFE.js → chunk-UJ6GYL6T.js} +1 -1
- package/dist/chunks/chunk-XVSBZ4ZW.js +54 -0
- package/dist/chunks/{chunk-C4IUUTAB.js → chunk-ZNMHIPUZ.js} +1 -1
- package/dist/chunks/{chunk-HPIZNWF7.js → chunk-ZYHSUNQO.js} +9 -1
- package/dist/cli/figure.js +33 -32
- package/dist/figure.js +17 -16
- package/dist/figureSettings.js +4 -4
- package/dist/hoverText.js +8 -0
- package/dist/index.js +96 -76
- package/dist/layout/forceCache.js +23 -0
- package/dist/layout/walkRowDraw.js +4 -4
- package/dist/layout/walkRowLayout.js +3 -1
- package/dist/layout/walkStrip.js +9 -5
- package/dist/layoutModes.js +2 -2
- package/dist/pipeline.js +3 -3
- package/dist/referenceRampCss.js +3 -3
- package/dist/referenceStrip.js +3 -3
- package/dist/renderer/GeometryBuilder.js +2 -2
- package/dist/renderer/geometryInputs.js +6 -0
- package/dist/tubeMap/nodeColors.js +3 -3
- package/dist/types/hoverText.d.ts +17 -0
- package/dist/types/index.d.ts +6 -1
- package/dist/types/layout/forceCache.d.ts +11 -0
- package/dist/types/layout/walkRowLayout.d.ts +2 -1
- package/dist/types/layout/walkStrip.d.ts +13 -0
- package/dist/types/renderer/geometryInputs.d.ts +11 -0
- package/dist/types/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/dist/viewport.js +4 -4
- package/dist/walkEncoding.js +3 -3
- package/dist/walkHighlight.js +4 -4
- package/package.json +1 -1
- package/dist/chunks/{chunk-W7R55CIZ.js → chunk-RCWYY6XA.js} +3 -3
- package/dist/chunks/{chunk-SGAMPIKO.js → chunk-WZATPZNH.js} +8 -8
package/dist/index.js
CHANGED
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@@ -1,38 +1,44 @@
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import {
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wheelZoomFactor
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} from "./chunks/chunk-TDQLINVI.js";
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import {
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tubeMapNodeColors
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} from "./chunks/chunk-O7QXUXGZ.js";
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import {
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connectorAt,
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drawTubeMapConnectors,
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referenceNodes,
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tubeMapConnectors
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} from "./chunks/chunk-GQ2AOHU4.js";
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import {
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drawTubeMap,
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tubeMapPicture
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} from "./chunks/chunk-CR7EGAFE.js";
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import "./chunks/chunk-EJ5OZTCK.js";
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import {
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tubeMapFrame,
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tubeMapNodeAt
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} from "./chunks/chunk-VZQ4FKLR.js";
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import {
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referenceKnots,
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warpX
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} from "./chunks/chunk-KQFOCDFY.js";
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import {
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drawTubeMapGenes,
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tubeMapGenes
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} from "./chunks/chunk-OWFPAIJI.js";
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import "./chunks/chunk-EJ5OZTCK.js";
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import {
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tubeMapNodeColors
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} from "./chunks/chunk-KEVQ46GG.js";
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import {
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referenceKnots,
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warpX
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} from "./chunks/chunk-KQFOCDFY.js";
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import {
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drawTubeMapRuler,
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referenceBoxes,
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rulerBoxes,
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tubeX
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} from "./chunks/chunk-DRA7733Q.js";
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import {
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connectorAt,
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drawTubeMapConnectors,
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referenceNodes,
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tubeMapConnectors
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} from "./chunks/chunk-GQ2AOHU4.js";
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import {
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createForceLayoutCache
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} from "./chunks/chunk-XVSBZ4ZW.js";
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import {
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bubbleSubgraph
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} from "./chunks/chunk-VHW7FDHU.js";
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import {
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genesFromBed,
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genesFromGff3Lines,
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classifyBubble
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} from "./chunks/chunk-WOO7QYKB.js";
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import {
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bubbleSubgraph
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} from "./chunks/chunk-VHW7FDHU.js";
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import {
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REFERENCE_STRIP_ZONE_PX,
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drawReferenceStrip,
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referenceStripBlocks,
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stripBlockAt
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} from "./chunks/chunk-
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} from "./chunks/chunk-UJ6GYL6T.js";
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import {
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FORCE_LAYOUT_LABEL,
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LAYOUT_MODES,
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layoutModeByValue,
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modeUsesLayoutEngine
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} from "./chunks/chunk-FRR2RGBT.js";
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import "./chunks/chunk-LOEA5IHZ.js";
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import "./chunks/chunk-AYOSNXLQ.js";
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import "./chunks/chunk-TEDQJPMI.js";
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import "./chunks/chunk-L3O7AWLI.js";
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import "./chunks/chunk-TZFWUT2C.js";
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import "./chunks/chunk-C44YRP5F.js";
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import "./chunks/chunk-RVS2QCOX.js";
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import "./chunks/chunk-HNQPEMYE.js";
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import {
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} from "./chunks/chunk-K5SIJGAE.js";
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resolveReferenceSample
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import "./chunks/chunk-WSIFAZU7.js";
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import {
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edgeHoverText,
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regionLabel
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} from "./chunks/chunk-AZFVORTC.js";
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LAYOUT_ENGINES,
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layoutEngine
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import {
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loadBandage
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} from "./chunks/chunk-7XHHVYG7.js";
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import {
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FORCE_LAYOUT_LABEL,
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LAYOUT_MODES,
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layoutModeByValue,
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modeUsesLayoutEngine
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} from "./chunks/chunk-IW6K4VHZ.js";
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import "./chunks/chunk-LOEA5IHZ.js";
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import "./chunks/chunk-AYOSNXLQ.js";
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import "./chunks/chunk-TEDQJPMI.js";
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import "./chunks/chunk-L3O7AWLI.js";
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import "./chunks/chunk-TZFWUT2C.js";
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import "./chunks/chunk-C44YRP5F.js";
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import "./chunks/chunk-RVS2QCOX.js";
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import "./chunks/chunk-HNQPEMYE.js";
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figureSvg
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} from "./chunks/chunk-
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} from "./chunks/chunk-GYTQK5PR.js";
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} from "./chunks/chunk-LOCJN3BZ.js";
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import {
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svgCanvas
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} from "./chunks/chunk-47DYCZOK.js";
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segmentAt,
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} from "./chunks/chunk-RCWYY6XA.js";
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computeReferenceRamp,
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connectorAt,
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contains,
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createForceLayoutCache,
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cutGbzRegion,
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cutWindowGFA,
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cutsWholeWalks,
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deletionDrawing,
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drawReferenceStrip,
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drawTubeMapRuler,
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el,
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encodingSwatchCss,
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layoutEngine,
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layoutExtent,
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layoutGeometryInputs,
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layoutModeByValue,
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loadBandage,
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@@ -442,6 +459,7 @@ export {
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referencePathQuery,
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referenceSamplesOf,
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referenceStripBlocks,
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regionLabel,
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resolveColorScheme,
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resolveEncoding,
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resolveReferenceSample,
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walkLift,
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walkMarksTree,
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walkPosition,
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walkRowLabels,
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walkRowReadout,
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walkRows,
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walkRowsExtent,
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walkRowsKey,
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walkRowsTree,
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walkStripApplies,
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walkStripFrame,
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warpX,
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@@ -0,0 +1,23 @@
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import {
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createForceLayoutCache
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} from "../chunks/chunk-XVSBZ4ZW.js";
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import "../chunks/chunk-ES2N6V56.js";
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import "../chunks/chunk-ST2IBUAN.js";
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import "../chunks/chunk-BPLIXMH7.js";
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import "../chunks/chunk-TAMCZHLW.js";
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import "../chunks/chunk-JVLURPFW.js";
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import "../chunks/chunk-UVBGRJQX.js";
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import "../chunks/chunk-6JEWNXCQ.js";
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import "../chunks/chunk-N6FECAXP.js";
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import "../chunks/chunk-2CVHXFK7.js";
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import "../chunks/chunk-CPMHA4W5.js";
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import "../chunks/chunk-FYQWPEEY.js";
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export {
|
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createForceLayoutCache
|
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+
};
|
|
@@ -26,13 +26,13 @@ import {
|
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|
walkRowsKey,
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walkRowsKeyTree,
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|
walkRowsTree
|
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} from "../chunks/chunk-
|
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|
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import "../chunks/chunk-
|
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+
} from "../chunks/chunk-7G7TFATC.js";
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import "../chunks/chunk-WFB5TXRA.js";
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import "../chunks/chunk-WFB5TXRA.js";
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import "../chunks/chunk-3ZZSX5HN.js";
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|
import "../chunks/chunk-AB35TJST.js";
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|
import "../chunks/chunk-NNODIW4U.js";
|
|
@@ -1,13 +1,15 @@
|
|
|
1
1
|
import {
|
|
2
|
+
walkRowLabels,
|
|
2
3
|
walkRowLayout,
|
|
3
4
|
walkRowsExtent
|
|
4
|
-
} from "../chunks/chunk-
|
|
5
|
+
} from "../chunks/chunk-MP7LXLWV.js";
|
|
5
6
|
import "../chunks/chunk-SZNZ2T6D.js";
|
|
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7
|
import "../chunks/chunk-ST2IBUAN.js";
|
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8
|
import "../chunks/chunk-BPLIXMH7.js";
|
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|
import "../chunks/chunk-CPMHA4W5.js";
|
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10
|
import "../chunks/chunk-FYQWPEEY.js";
|
|
10
11
|
export {
|
|
12
|
+
walkRowLabels,
|
|
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13
|
walkRowLayout,
|
|
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14
|
walkRowsExtent
|
|
13
15
|
};
|
package/dist/layout/walkStrip.js
CHANGED
|
@@ -1,22 +1,24 @@
|
|
|
1
1
|
import {
|
|
2
2
|
WALK_STRIP_CEILING_PX,
|
|
3
|
+
cutsWholeWalks,
|
|
3
4
|
segmentAt,
|
|
4
5
|
stripGeneGaps,
|
|
5
6
|
stripMarks,
|
|
6
7
|
stripRowAt,
|
|
7
8
|
walkMarksTree,
|
|
9
|
+
walkStripApplies,
|
|
8
10
|
walkStripFrame,
|
|
9
11
|
walkStripLabelsTree
|
|
10
|
-
} from "../chunks/chunk-
|
|
12
|
+
} from "../chunks/chunk-ZYHSUNQO.js";
|
|
11
13
|
import {
|
|
12
14
|
LABELLED_ROW_PX
|
|
13
|
-
} from "../chunks/chunk-
|
|
14
|
-
import "../chunks/chunk-
|
|
15
|
-
import "../chunks/chunk-
|
|
15
|
+
} from "../chunks/chunk-7G7TFATC.js";
|
|
16
|
+
import "../chunks/chunk-AVJK272H.js";
|
|
17
|
+
import "../chunks/chunk-RCWYY6XA.js";
|
|
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18
|
import "../chunks/chunk-UMNCCYBN.js";
|
|
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19
|
import "../chunks/chunk-PBENCR5L.js";
|
|
18
|
-
import "../chunks/chunk-WFB5TXRA.js";
|
|
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20
|
import "../chunks/chunk-7GBL7SJY.js";
|
|
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|
+
import "../chunks/chunk-WFB5TXRA.js";
|
|
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22
|
import "../chunks/chunk-3ZZSX5HN.js";
|
|
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23
|
import "../chunks/chunk-AB35TJST.js";
|
|
22
24
|
import "../chunks/chunk-NNODIW4U.js";
|
|
@@ -31,11 +33,13 @@ import "../chunks/chunk-FYQWPEEY.js";
|
|
|
31
33
|
export {
|
|
32
34
|
LABELLED_ROW_PX,
|
|
33
35
|
WALK_STRIP_CEILING_PX,
|
|
36
|
+
cutsWholeWalks,
|
|
34
37
|
segmentAt,
|
|
35
38
|
stripGeneGaps,
|
|
36
39
|
stripMarks,
|
|
37
40
|
stripRowAt,
|
|
38
41
|
walkMarksTree,
|
|
42
|
+
walkStripApplies,
|
|
39
43
|
walkStripFrame,
|
|
40
44
|
walkStripLabelsTree
|
|
41
45
|
};
|
package/dist/layoutModes.js
CHANGED
|
@@ -4,7 +4,7 @@ import {
|
|
|
4
4
|
LAYOUT_MODE_VALUES,
|
|
5
5
|
layoutModeByValue,
|
|
6
6
|
modeUsesLayoutEngine
|
|
7
|
-
} from "./chunks/chunk-
|
|
7
|
+
} from "./chunks/chunk-FRR2RGBT.js";
|
|
8
8
|
import "./chunks/chunk-LOEA5IHZ.js";
|
|
9
9
|
import "./chunks/chunk-AYOSNXLQ.js";
|
|
10
10
|
import "./chunks/chunk-TEDQJPMI.js";
|
|
@@ -13,7 +13,7 @@ import "./chunks/chunk-TZFWUT2C.js";
|
|
|
13
13
|
import "./chunks/chunk-C44YRP5F.js";
|
|
14
14
|
import "./chunks/chunk-RVS2QCOX.js";
|
|
15
15
|
import "./chunks/chunk-HNQPEMYE.js";
|
|
16
|
-
import "./chunks/chunk-
|
|
16
|
+
import "./chunks/chunk-MP7LXLWV.js";
|
|
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17
|
import "./chunks/chunk-SZNZ2T6D.js";
|
|
18
18
|
import "./chunks/chunk-7GBL7SJY.js";
|
|
19
19
|
import "./chunks/chunk-3ZZSX5HN.js";
|
package/dist/pipeline.js
CHANGED
|
@@ -11,17 +11,17 @@ import {
|
|
|
11
11
|
forceLayout,
|
|
12
12
|
layoutExtent,
|
|
13
13
|
loadGraph
|
|
14
|
-
} from "./chunks/chunk-
|
|
15
|
-
import "./chunks/chunk-PUG7LXDF.js";
|
|
14
|
+
} from "./chunks/chunk-WZATPZNH.js";
|
|
16
15
|
import "./chunks/chunk-IGVV37VI.js";
|
|
16
|
+
import "./chunks/chunk-PUG7LXDF.js";
|
|
17
17
|
import "./chunks/chunk-72N5DJHZ.js";
|
|
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18
|
import "./chunks/chunk-QYBZZI5H.js";
|
|
19
19
|
import "./chunks/chunk-CDLPYR5O.js";
|
|
20
|
-
import "./chunks/chunk-JVLURPFW.js";
|
|
21
20
|
import "./chunks/chunk-ES2N6V56.js";
|
|
22
21
|
import "./chunks/chunk-ST2IBUAN.js";
|
|
23
22
|
import "./chunks/chunk-BPLIXMH7.js";
|
|
24
23
|
import "./chunks/chunk-TAMCZHLW.js";
|
|
24
|
+
import "./chunks/chunk-JVLURPFW.js";
|
|
25
25
|
import "./chunks/chunk-UVBGRJQX.js";
|
|
26
26
|
import "./chunks/chunk-6JEWNXCQ.js";
|
|
27
27
|
import "./chunks/chunk-N6FECAXP.js";
|
package/dist/referenceRampCss.js
CHANGED
|
@@ -4,12 +4,12 @@ import {
|
|
|
4
4
|
rampHue,
|
|
5
5
|
rampHueCss,
|
|
6
6
|
rampStops
|
|
7
|
-
} from "./chunks/chunk-
|
|
8
|
-
import "./chunks/chunk-
|
|
7
|
+
} from "./chunks/chunk-AVJK272H.js";
|
|
8
|
+
import "./chunks/chunk-RCWYY6XA.js";
|
|
9
9
|
import "./chunks/chunk-UMNCCYBN.js";
|
|
10
10
|
import "./chunks/chunk-PBENCR5L.js";
|
|
11
|
-
import "./chunks/chunk-WFB5TXRA.js";
|
|
12
11
|
import "./chunks/chunk-7GBL7SJY.js";
|
|
12
|
+
import "./chunks/chunk-WFB5TXRA.js";
|
|
13
13
|
import "./chunks/chunk-3ZZSX5HN.js";
|
|
14
14
|
import "./chunks/chunk-AB35TJST.js";
|
|
15
15
|
import "./chunks/chunk-ES2N6V56.js";
|
package/dist/referenceStrip.js
CHANGED
|
@@ -7,12 +7,12 @@ import {
|
|
|
7
7
|
stripBlockAt,
|
|
8
8
|
stripOverhang,
|
|
9
9
|
stripPixels
|
|
10
|
-
} from "./chunks/chunk-
|
|
11
|
-
import "./chunks/chunk-
|
|
10
|
+
} from "./chunks/chunk-UJ6GYL6T.js";
|
|
11
|
+
import "./chunks/chunk-RCWYY6XA.js";
|
|
12
12
|
import "./chunks/chunk-UMNCCYBN.js";
|
|
13
13
|
import "./chunks/chunk-PBENCR5L.js";
|
|
14
|
-
import "./chunks/chunk-WFB5TXRA.js";
|
|
15
14
|
import "./chunks/chunk-7GBL7SJY.js";
|
|
15
|
+
import "./chunks/chunk-WFB5TXRA.js";
|
|
16
16
|
import "./chunks/chunk-3ZZSX5HN.js";
|
|
17
17
|
import "./chunks/chunk-AB35TJST.js";
|
|
18
18
|
import "./chunks/chunk-ES2N6V56.js";
|
|
@@ -11,11 +11,11 @@ import {
|
|
|
11
11
|
endTangent,
|
|
12
12
|
getNodeColor,
|
|
13
13
|
hslToRgb
|
|
14
|
-
} from "../chunks/chunk-
|
|
14
|
+
} from "../chunks/chunk-RCWYY6XA.js";
|
|
15
15
|
import "../chunks/chunk-UMNCCYBN.js";
|
|
16
16
|
import "../chunks/chunk-PBENCR5L.js";
|
|
17
|
-
import "../chunks/chunk-WFB5TXRA.js";
|
|
18
17
|
import "../chunks/chunk-7GBL7SJY.js";
|
|
18
|
+
import "../chunks/chunk-WFB5TXRA.js";
|
|
19
19
|
import "../chunks/chunk-3ZZSX5HN.js";
|
|
20
20
|
import "../chunks/chunk-AB35TJST.js";
|
|
21
21
|
import "../chunks/chunk-ES2N6V56.js";
|
|
@@ -1,11 +1,11 @@
|
|
|
1
1
|
import {
|
|
2
2
|
tubeMapNodeColors
|
|
3
|
-
} from "../chunks/chunk-
|
|
4
|
-
import "../chunks/chunk-
|
|
3
|
+
} from "../chunks/chunk-KEVQ46GG.js";
|
|
4
|
+
import "../chunks/chunk-RCWYY6XA.js";
|
|
5
5
|
import "../chunks/chunk-UMNCCYBN.js";
|
|
6
6
|
import "../chunks/chunk-PBENCR5L.js";
|
|
7
|
-
import "../chunks/chunk-WFB5TXRA.js";
|
|
8
7
|
import "../chunks/chunk-7GBL7SJY.js";
|
|
8
|
+
import "../chunks/chunk-WFB5TXRA.js";
|
|
9
9
|
import "../chunks/chunk-3ZZSX5HN.js";
|
|
10
10
|
import "../chunks/chunk-AB35TJST.js";
|
|
11
11
|
import "../chunks/chunk-ES2N6V56.js";
|
|
@@ -0,0 +1,17 @@
|
|
|
1
|
+
import type { DeletionEdge } from './deletionEdges.js';
|
|
2
|
+
import type { GraphEdge } from './types.js';
|
|
3
|
+
export declare function regionLabel(loc: {
|
|
4
|
+
refName: string;
|
|
5
|
+
start: number;
|
|
6
|
+
end: number;
|
|
7
|
+
}): string;
|
|
8
|
+
export declare function edgeHoverText(edge: GraphEdge, deletion: DeletionEdge | undefined, nameOf?: (id: string) => string): {
|
|
9
|
+
deletion: {
|
|
10
|
+
bp: string;
|
|
11
|
+
where: string;
|
|
12
|
+
};
|
|
13
|
+
ends?: undefined;
|
|
14
|
+
} | {
|
|
15
|
+
ends: string;
|
|
16
|
+
deletion?: undefined;
|
|
17
|
+
};
|
package/dist/types/index.d.ts
CHANGED
|
@@ -1,6 +1,11 @@
|
|
|
1
1
|
export { FIT_PADDING, clampZoom, drawingBounds, engineRequest, fitTransform, forceLayout, layoutExtent, loadGraph, } from './pipeline.js';
|
|
2
2
|
export type { Bounds, EngineRequest, EngineSettings, LayoutEngine, } from './pipeline.js';
|
|
3
3
|
export { ENGINE_DEFAULTS, engineSettingsOf } from './pipeline.js';
|
|
4
|
+
export { createForceLayoutCache } from './layout/forceCache.js';
|
|
5
|
+
export { cutsWholeWalks, walkStripApplies } from './layout/walkStrip.js';
|
|
6
|
+
export type { ForceLayoutCache } from './layout/forceCache.js';
|
|
7
|
+
export { edgeHoverText, regionLabel } from './hoverText.js';
|
|
8
|
+
export { layoutGeometryInputs } from './renderer/geometryInputs.js';
|
|
4
9
|
export { FIGURE_DEFAULTS, figureSpecSettings } from './figureSettings.js';
|
|
5
10
|
export type { FigureSettings } from './figureSettings.js';
|
|
6
11
|
export { FORCE_LAYOUT_LABEL, LAYOUT_MODES, layoutModeByValue, modeUsesLayoutEngine, } from './layoutModes.js';
|
|
@@ -71,7 +76,7 @@ export type { StripFrame, StripMark } from './layout/walkStrip.js';
|
|
|
71
76
|
export { el, serializeEl } from './el.js';
|
|
72
77
|
export type { El, ElAttrs } from './el.js';
|
|
73
78
|
export { RAMP_GRADIENT_CSS, rampHue, rampHueCss, rampStops, } from './referenceRampCss.js';
|
|
74
|
-
export { walkRowsExtent } from './layout/walkRowLayout.js';
|
|
79
|
+
export { walkRowLabels, walkRowsExtent } from './layout/walkRowLayout.js';
|
|
75
80
|
export { ROW_HEIGHT_PX } from './layout/rowSpacing.js';
|
|
76
81
|
export { HALO_FACTOR, LEGEND_INSET_PX, geneCoverageNote, layoutLabels, } from './labelLayout.js';
|
|
77
82
|
export type { LabelLayout, LabelLayoutSource } from './labelLayout.js';
|
|
@@ -0,0 +1,11 @@
|
|
|
1
|
+
import type { EngineSettings, LayoutEngine } from '../pipeline.js';
|
|
2
|
+
import type { Graph, LayoutResult } from '../types.js';
|
|
3
|
+
export interface ForceLayoutCache {
|
|
4
|
+
layout(graph: Graph, settings: EngineSettings, engine: LayoutEngine): Promise<{
|
|
5
|
+
result: LayoutResult;
|
|
6
|
+
duration: number;
|
|
7
|
+
}>;
|
|
8
|
+
ready(graph: Graph, settings: EngineSettings): LayoutResult | undefined;
|
|
9
|
+
inherit(from: Graph, to: Graph): void;
|
|
10
|
+
}
|
|
11
|
+
export declare function createForceLayoutCache(size?: number): ForceLayoutCache;
|
|
@@ -1,10 +1,11 @@
|
|
|
1
1
|
import type { RowPitch } from './walkRowDraw.js';
|
|
2
2
|
import type { WalkRows } from './walkRows.js';
|
|
3
|
-
import type { Graph, LayoutResult } from '../types.js';
|
|
3
|
+
import type { Graph, LayoutResult, RowLabel } from '../types.js';
|
|
4
4
|
export declare function walkRowsExtent(walks: WalkRows, pitch?: Pick<RowPitch, 'rowPx' | 'readouts'>): {
|
|
5
5
|
maxX: number;
|
|
6
6
|
maxY: number;
|
|
7
7
|
};
|
|
8
|
+
export declare function walkRowLabels(rows: WalkRows | undefined, layout?: LayoutResult, pitch?: RowPitch): RowLabel[];
|
|
8
9
|
export declare function walkRowLayout(graph: Graph, region?: {
|
|
9
10
|
start: number;
|
|
10
11
|
end: number;
|
|
@@ -1,7 +1,20 @@
|
|
|
1
1
|
import type { GeneGaps, RowGene, WalkRowsFrame } from './walkRowDraw.js';
|
|
2
2
|
import type { WalkRow, WalkRows } from './walkRows.js';
|
|
3
|
+
import type { LayoutMode } from '../layoutModes.js';
|
|
3
4
|
import type { Graph, GraphNode } from '../types.js';
|
|
4
5
|
export { LABELLED_ROW_PX } from './walkRowDraw.js';
|
|
6
|
+
export declare function walkStripApplies(o: {
|
|
7
|
+
walkStrip: boolean;
|
|
8
|
+
mode: Pick<LayoutMode, 'drawsNodes'>;
|
|
9
|
+
drawsPicture?: boolean;
|
|
10
|
+
popped?: boolean;
|
|
11
|
+
walks: number;
|
|
12
|
+
host?: boolean;
|
|
13
|
+
}): boolean;
|
|
14
|
+
export declare function cutsWholeWalks(mode: Pick<LayoutMode, 'wholeWalks'>, o: {
|
|
15
|
+
walkStrip: boolean;
|
|
16
|
+
host?: boolean;
|
|
17
|
+
}): boolean;
|
|
5
18
|
export declare const WALK_STRIP_CEILING_PX = 260;
|
|
6
19
|
export interface StripMark {
|
|
7
20
|
row: string;
|
|
@@ -0,0 +1,11 @@
|
|
|
1
|
+
import type { DeletionDrawing } from '../deletionEdges.js';
|
|
2
|
+
import type { LayoutResult } from '../types.js';
|
|
3
|
+
export declare function layoutGeometryInputs(layout: LayoutResult, drawing: DeletionDrawing, o?: {
|
|
4
|
+
drawsRows?: boolean;
|
|
5
|
+
}): {
|
|
6
|
+
nodePositions: Record<string, import("../index.js").NodeSegment[]>;
|
|
7
|
+
deletions: Map<number, string[]>;
|
|
8
|
+
deletionRoutes: Record<number, import("../index.js").NodeSegment[]> | undefined;
|
|
9
|
+
stranded: boolean | undefined;
|
|
10
|
+
hiddenEdges: ReadonlySet<number>;
|
|
11
|
+
};
|
package/dist/types/version.d.ts
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
export declare const version = "7.
|
|
1
|
+
export declare const version = "7.5.0";
|