@jbrowse/bandage-core 7.3.0 → 7.5.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (46) hide show
  1. package/dist/chunks/{chunk-ERHAGG72.js → chunk-2PEBQ5VA.js} +1 -1
  2. package/dist/chunks/{chunk-36UKA6RQ.js → chunk-3LXG54PN.js} +1 -1
  3. package/dist/chunks/{chunk-AGJZ5RDC.js → chunk-4UBWXZVX.js} +1 -1
  4. package/dist/chunks/{chunk-RCPGXIWA.js → chunk-7G7TFATC.js} +2 -2
  5. package/dist/chunks/{chunk-Z3OHBOEA.js → chunk-AVJK272H.js} +1 -1
  6. package/dist/chunks/chunk-AZFVORTC.js +19 -0
  7. package/dist/chunks/{chunk-IW6K4VHZ.js → chunk-FRR2RGBT.js} +1 -1
  8. package/dist/chunks/{chunk-45J7P6YW.js → chunk-GYTQK5PR.js} +34 -39
  9. package/dist/chunks/{chunk-CBBDB3UC.js → chunk-H5S2ONCJ.js} +1 -1
  10. package/dist/chunks/{chunk-O7QXUXGZ.js → chunk-KEVQ46GG.js} +1 -1
  11. package/dist/chunks/chunk-LOCJN3BZ.js +14 -0
  12. package/dist/chunks/{chunk-3JANT2SW.js → chunk-MP7LXLWV.js} +13 -0
  13. package/dist/chunks/{chunk-5N5YRRFE.js → chunk-UJ6GYL6T.js} +1 -1
  14. package/dist/chunks/chunk-XVSBZ4ZW.js +54 -0
  15. package/dist/chunks/{chunk-C4IUUTAB.js → chunk-ZNMHIPUZ.js} +1 -1
  16. package/dist/chunks/{chunk-HPIZNWF7.js → chunk-ZYHSUNQO.js} +9 -1
  17. package/dist/cli/figure.js +33 -32
  18. package/dist/figure.js +17 -16
  19. package/dist/figureSettings.js +4 -4
  20. package/dist/hoverText.js +8 -0
  21. package/dist/index.js +96 -76
  22. package/dist/layout/forceCache.js +23 -0
  23. package/dist/layout/walkRowDraw.js +4 -4
  24. package/dist/layout/walkRowLayout.js +3 -1
  25. package/dist/layout/walkStrip.js +9 -5
  26. package/dist/layoutModes.js +2 -2
  27. package/dist/pipeline.js +3 -3
  28. package/dist/referenceRampCss.js +3 -3
  29. package/dist/referenceStrip.js +3 -3
  30. package/dist/renderer/GeometryBuilder.js +2 -2
  31. package/dist/renderer/geometryInputs.js +6 -0
  32. package/dist/tubeMap/nodeColors.js +3 -3
  33. package/dist/types/hoverText.d.ts +17 -0
  34. package/dist/types/index.d.ts +6 -1
  35. package/dist/types/layout/forceCache.d.ts +11 -0
  36. package/dist/types/layout/walkRowLayout.d.ts +2 -1
  37. package/dist/types/layout/walkStrip.d.ts +13 -0
  38. package/dist/types/renderer/geometryInputs.d.ts +11 -0
  39. package/dist/types/version.d.ts +1 -1
  40. package/dist/version.js +1 -1
  41. package/dist/viewport.js +4 -4
  42. package/dist/walkEncoding.js +3 -3
  43. package/dist/walkHighlight.js +4 -4
  44. package/package.json +1 -1
  45. package/dist/chunks/{chunk-W7R55CIZ.js → chunk-RCWYY6XA.js} +3 -3
  46. package/dist/chunks/{chunk-SGAMPIKO.js → chunk-WZATPZNH.js} +8 -8
package/dist/index.js CHANGED
@@ -1,38 +1,44 @@
1
1
  import {
2
2
  wheelZoomFactor
3
3
  } from "./chunks/chunk-TDQLINVI.js";
4
- import {
5
- tubeMapNodeColors
6
- } from "./chunks/chunk-O7QXUXGZ.js";
7
- import {
8
- connectorAt,
9
- drawTubeMapConnectors,
10
- referenceNodes,
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- tubeMapConnectors
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- } from "./chunks/chunk-GQ2AOHU4.js";
13
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  import {
14
5
  drawTubeMap,
15
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  tubeMapPicture
16
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  } from "./chunks/chunk-CR7EGAFE.js";
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- import "./chunks/chunk-EJ5OZTCK.js";
18
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  import {
19
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  tubeMapFrame,
20
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  tubeMapNodeAt
21
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  } from "./chunks/chunk-VZQ4FKLR.js";
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- import {
23
- referenceKnots,
24
- warpX
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- } from "./chunks/chunk-KQFOCDFY.js";
26
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  import {
27
13
  drawTubeMapGenes,
28
14
  tubeMapGenes
29
15
  } from "./chunks/chunk-OWFPAIJI.js";
16
+ import "./chunks/chunk-EJ5OZTCK.js";
17
+ import {
18
+ tubeMapNodeColors
19
+ } from "./chunks/chunk-KEVQ46GG.js";
20
+ import {
21
+ referenceKnots,
22
+ warpX
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+ } from "./chunks/chunk-KQFOCDFY.js";
30
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  import {
31
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  drawTubeMapRuler,
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  referenceBoxes,
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  rulerBoxes,
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  tubeX
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  } from "./chunks/chunk-DRA7733Q.js";
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+ import {
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+ connectorAt,
32
+ drawTubeMapConnectors,
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+ referenceNodes,
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+ tubeMapConnectors
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+ } from "./chunks/chunk-GQ2AOHU4.js";
36
+ import {
37
+ createForceLayoutCache
38
+ } from "./chunks/chunk-XVSBZ4ZW.js";
39
+ import {
40
+ bubbleSubgraph
41
+ } from "./chunks/chunk-VHW7FDHU.js";
36
42
  import {
37
43
  genesFromBed,
38
44
  genesFromGff3Lines,
@@ -52,15 +58,26 @@ import {
52
58
  classifyBubble
53
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  } from "./chunks/chunk-WOO7QYKB.js";
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  import "./chunks/chunk-MFKORG3F.js";
55
- import {
56
- bubbleSubgraph
57
- } from "./chunks/chunk-VHW7FDHU.js";
58
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  import {
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  REFERENCE_STRIP_ZONE_PX,
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  drawReferenceStrip,
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  referenceStripBlocks,
62
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  stripBlockAt
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- } from "./chunks/chunk-5N5YRRFE.js";
66
+ } from "./chunks/chunk-UJ6GYL6T.js";
67
+ import {
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+ FORCE_LAYOUT_LABEL,
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+ LAYOUT_MODES,
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+ layoutModeByValue,
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+ modeUsesLayoutEngine
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+ } from "./chunks/chunk-FRR2RGBT.js";
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+ import "./chunks/chunk-LOEA5IHZ.js";
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+ import "./chunks/chunk-AYOSNXLQ.js";
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+ import "./chunks/chunk-TEDQJPMI.js";
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+ import "./chunks/chunk-L3O7AWLI.js";
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+ import "./chunks/chunk-TZFWUT2C.js";
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+ import "./chunks/chunk-C44YRP5F.js";
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+ import "./chunks/chunk-RVS2QCOX.js";
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+ import "./chunks/chunk-HNQPEMYE.js";
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  import {
65
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  LAYOUT_QUALITIES
66
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  } from "./chunks/chunk-K5SIJGAE.js";
@@ -78,6 +95,10 @@ import {
78
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  resolveReferenceSample
79
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  } from "./chunks/chunk-LTUWJKHD.js";
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  import "./chunks/chunk-WSIFAZU7.js";
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+ import {
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+ edgeHoverText,
100
+ regionLabel
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+ } from "./chunks/chunk-AZFVORTC.js";
81
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  import {
82
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  LAYOUT_ENGINES,
83
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  layoutEngine
@@ -89,42 +110,27 @@ import "./chunks/chunk-LYJ4US66.js";
89
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  import {
90
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  loadBandage
91
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  } from "./chunks/chunk-7XHHVYG7.js";
92
- import {
93
- FORCE_LAYOUT_LABEL,
94
- LAYOUT_MODES,
95
- layoutModeByValue,
96
- modeUsesLayoutEngine
97
- } from "./chunks/chunk-IW6K4VHZ.js";
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- import "./chunks/chunk-LOEA5IHZ.js";
99
- import "./chunks/chunk-AYOSNXLQ.js";
100
- import "./chunks/chunk-TEDQJPMI.js";
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- import "./chunks/chunk-L3O7AWLI.js";
102
- import "./chunks/chunk-TZFWUT2C.js";
103
- import "./chunks/chunk-C44YRP5F.js";
104
- import "./chunks/chunk-RVS2QCOX.js";
105
- import "./chunks/chunk-HNQPEMYE.js";
106
113
  import {
107
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  figureSvg
108
- } from "./chunks/chunk-45J7P6YW.js";
115
+ } from "./chunks/chunk-GYTQK5PR.js";
116
+ import {
117
+ layoutGeometryInputs
118
+ } from "./chunks/chunk-LOCJN3BZ.js";
119
+ import {
120
+ svgCanvas
121
+ } from "./chunks/chunk-47DYCZOK.js";
109
122
  import {
110
123
  WALK_STRIP_CEILING_PX,
124
+ cutsWholeWalks,
111
125
  segmentAt,
112
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  stripGeneGaps,
113
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  stripMarks,
114
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  stripRowAt,
115
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  walkMarksTree,
130
+ walkStripApplies,
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  walkStripFrame,
117
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  walkStripLabelsTree
118
- } from "./chunks/chunk-HPIZNWF7.js";
119
- import {
120
- Canvas2DRenderer
121
- } from "./chunks/chunk-CH3DLBUT.js";
122
- import {
123
- getDpr
124
- } from "./chunks/chunk-4BYTEJGW.js";
125
- import {
126
- svgCanvas
127
- } from "./chunks/chunk-47DYCZOK.js";
133
+ } from "./chunks/chunk-ZYHSUNQO.js";
128
134
  import {
129
135
  BAR_PX,
130
136
  CALL_TICK,
@@ -151,7 +157,13 @@ import {
151
157
  walkRowsKey,
152
158
  walkRowsKeyTree,
153
159
  walkRowsTree
154
- } from "./chunks/chunk-RCPGXIWA.js";
160
+ } from "./chunks/chunk-7G7TFATC.js";
161
+ import {
162
+ Canvas2DRenderer
163
+ } from "./chunks/chunk-CH3DLBUT.js";
164
+ import {
165
+ getDpr
166
+ } from "./chunks/chunk-4BYTEJGW.js";
155
167
  import {
156
168
  EXON_COLOR,
157
169
  exonOutlineTree,
@@ -164,7 +176,15 @@ import {
164
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  facetLifts,
165
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  walkHighlight,
166
178
  walkLift
167
- } from "./chunks/chunk-36UKA6RQ.js";
179
+ } from "./chunks/chunk-3LXG54PN.js";
180
+ import {
181
+ WALK_FIELDS,
182
+ WALK_SCHEMES,
183
+ encodingStops,
184
+ encodingSwatchCss,
185
+ resolveEncoding,
186
+ schemeCss
187
+ } from "./chunks/chunk-ZNMHIPUZ.js";
168
188
  import {
169
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  rangeText,
170
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  walkKey,
@@ -175,10 +195,16 @@ import {
175
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  rampHue,
176
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  rampHueCss,
177
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  rampStops
178
- } from "./chunks/chunk-Z3OHBOEA.js";
198
+ } from "./chunks/chunk-AVJK272H.js";
199
+ import {
200
+ REFERENCE_RAMP_MAX_HUE,
201
+ buildGeometry,
202
+ computeReferenceRamp
203
+ } from "./chunks/chunk-RCWYY6XA.js";
204
+ import "./chunks/chunk-UMNCCYBN.js";
179
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  import {
180
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  version
181
- } from "./chunks/chunk-ERHAGG72.js";
207
+ } from "./chunks/chunk-2PEBQ5VA.js";
182
208
  import {
183
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  axisScaleOf,
184
210
  contains,
@@ -186,21 +212,15 @@ import {
186
212
  screenToLayout,
187
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  viewportOf,
188
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  zoomAbout
189
- } from "./chunks/chunk-AGJZ5RDC.js";
215
+ } from "./chunks/chunk-4UBWXZVX.js";
190
216
  import {
191
- WALK_FIELDS,
192
- WALK_SCHEMES,
193
- encodingStops,
194
- encodingSwatchCss,
195
- resolveEncoding,
196
- schemeCss
197
- } from "./chunks/chunk-C4IUUTAB.js";
217
+ walkRowLabels,
218
+ walkRowsExtent
219
+ } from "./chunks/chunk-MP7LXLWV.js";
198
220
  import {
199
- REFERENCE_RAMP_MAX_HUE,
200
- buildGeometry,
201
- computeReferenceRamp
202
- } from "./chunks/chunk-W7R55CIZ.js";
203
- import "./chunks/chunk-UMNCCYBN.js";
221
+ filterSamples,
222
+ walkRows
223
+ } from "./chunks/chunk-SZNZ2T6D.js";
204
224
  import {
205
225
  NODE_WIDTHS,
206
226
  maxNodeWidthPx,
@@ -208,6 +228,11 @@ import {
208
228
  nodeInk,
209
229
  nodeWidthPx
210
230
  } from "./chunks/chunk-PBENCR5L.js";
231
+ import {
232
+ pathColorsLegible,
233
+ pathLegend,
234
+ walkLabelsOf
235
+ } from "./chunks/chunk-7GBL7SJY.js";
211
236
  import {
212
237
  WELL_KNOWN_SAMPLES,
213
238
  assemblyWalk,
@@ -230,18 +255,6 @@ import {
230
255
  } from "./chunks/chunk-FP4H7SFT.js";
231
256
  import "./chunks/chunk-MLSWIMZO.js";
232
257
  import "./chunks/chunk-WFB5TXRA.js";
233
- import {
234
- walkRowsExtent
235
- } from "./chunks/chunk-3JANT2SW.js";
236
- import {
237
- filterSamples,
238
- walkRows
239
- } from "./chunks/chunk-SZNZ2T6D.js";
240
- import {
241
- pathColorsLegible,
242
- pathLegend,
243
- walkLabelsOf
244
- } from "./chunks/chunk-7GBL7SJY.js";
245
258
  import {
246
259
  formatBp
247
260
  } from "./chunks/chunk-3ZZSX5HN.js";
@@ -269,7 +282,7 @@ import {
269
282
  import {
270
283
  FIGURE_DEFAULTS,
271
284
  figureSpecSettings
272
- } from "./chunks/chunk-CBBDB3UC.js";
285
+ } from "./chunks/chunk-H5S2ONCJ.js";
273
286
  import {
274
287
  ENGINE_DEFAULTS,
275
288
  FIT_PADDING,
@@ -282,13 +295,12 @@ import {
282
295
  forceLayout,
283
296
  layoutExtent,
284
297
  loadGraph
285
- } from "./chunks/chunk-SGAMPIKO.js";
286
- import "./chunks/chunk-PUG7LXDF.js";
298
+ } from "./chunks/chunk-WZATPZNH.js";
287
299
  import "./chunks/chunk-IGVV37VI.js";
300
+ import "./chunks/chunk-PUG7LXDF.js";
288
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  import "./chunks/chunk-72N5DJHZ.js";
289
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  import "./chunks/chunk-QYBZZI5H.js";
290
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  import "./chunks/chunk-CDLPYR5O.js";
291
- import "./chunks/chunk-JVLURPFW.js";
292
304
  import "./chunks/chunk-ES2N6V56.js";
293
305
  import "./chunks/chunk-ST2IBUAN.js";
294
306
  import {
@@ -297,6 +309,7 @@ import {
297
309
  panSNSample
298
310
  } from "./chunks/chunk-BPLIXMH7.js";
299
311
  import "./chunks/chunk-TAMCZHLW.js";
312
+ import "./chunks/chunk-JVLURPFW.js";
300
313
  import {
301
314
  BUBBLE_SPREADS
302
315
  } from "./chunks/chunk-UVBGRJQX.js";
@@ -368,8 +381,10 @@ export {
368
381
  computeReferenceRamp,
369
382
  connectorAt,
370
383
  contains,
384
+ createForceLayoutCache,
371
385
  cutGbzRegion,
372
386
  cutWindowGFA,
387
+ cutsWholeWalks,
373
388
  deletionDrawing,
374
389
  deletionEdges,
375
390
  drawReferenceStrip,
@@ -378,6 +393,7 @@ export {
378
393
  drawTubeMapGenes,
379
394
  drawTubeMapRuler,
380
395
  drawingBounds,
396
+ edgeHoverText,
381
397
  el,
382
398
  encodingStops,
383
399
  encodingSwatchCss,
@@ -410,6 +426,7 @@ export {
410
426
  haplotypeWanted,
411
427
  layoutEngine,
412
428
  layoutExtent,
429
+ layoutGeometryInputs,
413
430
  layoutLabels,
414
431
  layoutModeByValue,
415
432
  loadBandage,
@@ -442,6 +459,7 @@ export {
442
459
  referencePathQuery,
443
460
  referenceSamplesOf,
444
461
  referenceStripBlocks,
462
+ regionLabel,
445
463
  resolveColorScheme,
446
464
  resolveEncoding,
447
465
  resolveReferenceSample,
@@ -476,12 +494,14 @@ export {
476
494
  walkLift,
477
495
  walkMarksTree,
478
496
  walkPosition,
497
+ walkRowLabels,
479
498
  walkRowReadout,
480
499
  walkRows,
481
500
  walkRowsExtent,
482
501
  walkRowsKey,
483
502
  walkRowsKeyTree,
484
503
  walkRowsTree,
504
+ walkStripApplies,
485
505
  walkStripFrame,
486
506
  walkStripLabelsTree,
487
507
  warpX,
@@ -0,0 +1,23 @@
1
+ import {
2
+ createForceLayoutCache
3
+ } from "../chunks/chunk-XVSBZ4ZW.js";
4
+ import "../chunks/chunk-WZATPZNH.js";
5
+ import "../chunks/chunk-IGVV37VI.js";
6
+ import "../chunks/chunk-PUG7LXDF.js";
7
+ import "../chunks/chunk-72N5DJHZ.js";
8
+ import "../chunks/chunk-QYBZZI5H.js";
9
+ import "../chunks/chunk-CDLPYR5O.js";
10
+ import "../chunks/chunk-ES2N6V56.js";
11
+ import "../chunks/chunk-ST2IBUAN.js";
12
+ import "../chunks/chunk-BPLIXMH7.js";
13
+ import "../chunks/chunk-TAMCZHLW.js";
14
+ import "../chunks/chunk-JVLURPFW.js";
15
+ import "../chunks/chunk-UVBGRJQX.js";
16
+ import "../chunks/chunk-6JEWNXCQ.js";
17
+ import "../chunks/chunk-N6FECAXP.js";
18
+ import "../chunks/chunk-2CVHXFK7.js";
19
+ import "../chunks/chunk-CPMHA4W5.js";
20
+ import "../chunks/chunk-FYQWPEEY.js";
21
+ export {
22
+ createForceLayoutCache
23
+ };
@@ -26,13 +26,13 @@ import {
26
26
  walkRowsKey,
27
27
  walkRowsKeyTree,
28
28
  walkRowsTree
29
- } from "../chunks/chunk-RCPGXIWA.js";
30
- import "../chunks/chunk-Z3OHBOEA.js";
31
- import "../chunks/chunk-W7R55CIZ.js";
29
+ } from "../chunks/chunk-7G7TFATC.js";
30
+ import "../chunks/chunk-AVJK272H.js";
31
+ import "../chunks/chunk-RCWYY6XA.js";
32
32
  import "../chunks/chunk-UMNCCYBN.js";
33
33
  import "../chunks/chunk-PBENCR5L.js";
34
- import "../chunks/chunk-WFB5TXRA.js";
35
34
  import "../chunks/chunk-7GBL7SJY.js";
35
+ import "../chunks/chunk-WFB5TXRA.js";
36
36
  import "../chunks/chunk-3ZZSX5HN.js";
37
37
  import "../chunks/chunk-AB35TJST.js";
38
38
  import "../chunks/chunk-NNODIW4U.js";
@@ -1,13 +1,15 @@
1
1
  import {
2
+ walkRowLabels,
2
3
  walkRowLayout,
3
4
  walkRowsExtent
4
- } from "../chunks/chunk-3JANT2SW.js";
5
+ } from "../chunks/chunk-MP7LXLWV.js";
5
6
  import "../chunks/chunk-SZNZ2T6D.js";
6
7
  import "../chunks/chunk-ST2IBUAN.js";
7
8
  import "../chunks/chunk-BPLIXMH7.js";
8
9
  import "../chunks/chunk-CPMHA4W5.js";
9
10
  import "../chunks/chunk-FYQWPEEY.js";
10
11
  export {
12
+ walkRowLabels,
11
13
  walkRowLayout,
12
14
  walkRowsExtent
13
15
  };
@@ -1,22 +1,24 @@
1
1
  import {
2
2
  WALK_STRIP_CEILING_PX,
3
+ cutsWholeWalks,
3
4
  segmentAt,
4
5
  stripGeneGaps,
5
6
  stripMarks,
6
7
  stripRowAt,
7
8
  walkMarksTree,
9
+ walkStripApplies,
8
10
  walkStripFrame,
9
11
  walkStripLabelsTree
10
- } from "../chunks/chunk-HPIZNWF7.js";
12
+ } from "../chunks/chunk-ZYHSUNQO.js";
11
13
  import {
12
14
  LABELLED_ROW_PX
13
- } from "../chunks/chunk-RCPGXIWA.js";
14
- import "../chunks/chunk-Z3OHBOEA.js";
15
- import "../chunks/chunk-W7R55CIZ.js";
15
+ } from "../chunks/chunk-7G7TFATC.js";
16
+ import "../chunks/chunk-AVJK272H.js";
17
+ import "../chunks/chunk-RCWYY6XA.js";
16
18
  import "../chunks/chunk-UMNCCYBN.js";
17
19
  import "../chunks/chunk-PBENCR5L.js";
18
- import "../chunks/chunk-WFB5TXRA.js";
19
20
  import "../chunks/chunk-7GBL7SJY.js";
21
+ import "../chunks/chunk-WFB5TXRA.js";
20
22
  import "../chunks/chunk-3ZZSX5HN.js";
21
23
  import "../chunks/chunk-AB35TJST.js";
22
24
  import "../chunks/chunk-NNODIW4U.js";
@@ -31,11 +33,13 @@ import "../chunks/chunk-FYQWPEEY.js";
31
33
  export {
32
34
  LABELLED_ROW_PX,
33
35
  WALK_STRIP_CEILING_PX,
36
+ cutsWholeWalks,
34
37
  segmentAt,
35
38
  stripGeneGaps,
36
39
  stripMarks,
37
40
  stripRowAt,
38
41
  walkMarksTree,
42
+ walkStripApplies,
39
43
  walkStripFrame,
40
44
  walkStripLabelsTree
41
45
  };
@@ -4,7 +4,7 @@ import {
4
4
  LAYOUT_MODE_VALUES,
5
5
  layoutModeByValue,
6
6
  modeUsesLayoutEngine
7
- } from "./chunks/chunk-IW6K4VHZ.js";
7
+ } from "./chunks/chunk-FRR2RGBT.js";
8
8
  import "./chunks/chunk-LOEA5IHZ.js";
9
9
  import "./chunks/chunk-AYOSNXLQ.js";
10
10
  import "./chunks/chunk-TEDQJPMI.js";
@@ -13,7 +13,7 @@ import "./chunks/chunk-TZFWUT2C.js";
13
13
  import "./chunks/chunk-C44YRP5F.js";
14
14
  import "./chunks/chunk-RVS2QCOX.js";
15
15
  import "./chunks/chunk-HNQPEMYE.js";
16
- import "./chunks/chunk-3JANT2SW.js";
16
+ import "./chunks/chunk-MP7LXLWV.js";
17
17
  import "./chunks/chunk-SZNZ2T6D.js";
18
18
  import "./chunks/chunk-7GBL7SJY.js";
19
19
  import "./chunks/chunk-3ZZSX5HN.js";
package/dist/pipeline.js CHANGED
@@ -11,17 +11,17 @@ import {
11
11
  forceLayout,
12
12
  layoutExtent,
13
13
  loadGraph
14
- } from "./chunks/chunk-SGAMPIKO.js";
15
- import "./chunks/chunk-PUG7LXDF.js";
14
+ } from "./chunks/chunk-WZATPZNH.js";
16
15
  import "./chunks/chunk-IGVV37VI.js";
16
+ import "./chunks/chunk-PUG7LXDF.js";
17
17
  import "./chunks/chunk-72N5DJHZ.js";
18
18
  import "./chunks/chunk-QYBZZI5H.js";
19
19
  import "./chunks/chunk-CDLPYR5O.js";
20
- import "./chunks/chunk-JVLURPFW.js";
21
20
  import "./chunks/chunk-ES2N6V56.js";
22
21
  import "./chunks/chunk-ST2IBUAN.js";
23
22
  import "./chunks/chunk-BPLIXMH7.js";
24
23
  import "./chunks/chunk-TAMCZHLW.js";
24
+ import "./chunks/chunk-JVLURPFW.js";
25
25
  import "./chunks/chunk-UVBGRJQX.js";
26
26
  import "./chunks/chunk-6JEWNXCQ.js";
27
27
  import "./chunks/chunk-N6FECAXP.js";
@@ -4,12 +4,12 @@ import {
4
4
  rampHue,
5
5
  rampHueCss,
6
6
  rampStops
7
- } from "./chunks/chunk-Z3OHBOEA.js";
8
- import "./chunks/chunk-W7R55CIZ.js";
7
+ } from "./chunks/chunk-AVJK272H.js";
8
+ import "./chunks/chunk-RCWYY6XA.js";
9
9
  import "./chunks/chunk-UMNCCYBN.js";
10
10
  import "./chunks/chunk-PBENCR5L.js";
11
- import "./chunks/chunk-WFB5TXRA.js";
12
11
  import "./chunks/chunk-7GBL7SJY.js";
12
+ import "./chunks/chunk-WFB5TXRA.js";
13
13
  import "./chunks/chunk-3ZZSX5HN.js";
14
14
  import "./chunks/chunk-AB35TJST.js";
15
15
  import "./chunks/chunk-ES2N6V56.js";
@@ -7,12 +7,12 @@ import {
7
7
  stripBlockAt,
8
8
  stripOverhang,
9
9
  stripPixels
10
- } from "./chunks/chunk-5N5YRRFE.js";
11
- import "./chunks/chunk-W7R55CIZ.js";
10
+ } from "./chunks/chunk-UJ6GYL6T.js";
11
+ import "./chunks/chunk-RCWYY6XA.js";
12
12
  import "./chunks/chunk-UMNCCYBN.js";
13
13
  import "./chunks/chunk-PBENCR5L.js";
14
- import "./chunks/chunk-WFB5TXRA.js";
15
14
  import "./chunks/chunk-7GBL7SJY.js";
15
+ import "./chunks/chunk-WFB5TXRA.js";
16
16
  import "./chunks/chunk-3ZZSX5HN.js";
17
17
  import "./chunks/chunk-AB35TJST.js";
18
18
  import "./chunks/chunk-ES2N6V56.js";
@@ -11,11 +11,11 @@ import {
11
11
  endTangent,
12
12
  getNodeColor,
13
13
  hslToRgb
14
- } from "../chunks/chunk-W7R55CIZ.js";
14
+ } from "../chunks/chunk-RCWYY6XA.js";
15
15
  import "../chunks/chunk-UMNCCYBN.js";
16
16
  import "../chunks/chunk-PBENCR5L.js";
17
- import "../chunks/chunk-WFB5TXRA.js";
18
17
  import "../chunks/chunk-7GBL7SJY.js";
18
+ import "../chunks/chunk-WFB5TXRA.js";
19
19
  import "../chunks/chunk-3ZZSX5HN.js";
20
20
  import "../chunks/chunk-AB35TJST.js";
21
21
  import "../chunks/chunk-ES2N6V56.js";
@@ -0,0 +1,6 @@
1
+ import {
2
+ layoutGeometryInputs
3
+ } from "../chunks/chunk-LOCJN3BZ.js";
4
+ export {
5
+ layoutGeometryInputs
6
+ };
@@ -1,11 +1,11 @@
1
1
  import {
2
2
  tubeMapNodeColors
3
- } from "../chunks/chunk-O7QXUXGZ.js";
4
- import "../chunks/chunk-W7R55CIZ.js";
3
+ } from "../chunks/chunk-KEVQ46GG.js";
4
+ import "../chunks/chunk-RCWYY6XA.js";
5
5
  import "../chunks/chunk-UMNCCYBN.js";
6
6
  import "../chunks/chunk-PBENCR5L.js";
7
- import "../chunks/chunk-WFB5TXRA.js";
8
7
  import "../chunks/chunk-7GBL7SJY.js";
8
+ import "../chunks/chunk-WFB5TXRA.js";
9
9
  import "../chunks/chunk-3ZZSX5HN.js";
10
10
  import "../chunks/chunk-AB35TJST.js";
11
11
  import "../chunks/chunk-ES2N6V56.js";
@@ -0,0 +1,17 @@
1
+ import type { DeletionEdge } from './deletionEdges.js';
2
+ import type { GraphEdge } from './types.js';
3
+ export declare function regionLabel(loc: {
4
+ refName: string;
5
+ start: number;
6
+ end: number;
7
+ }): string;
8
+ export declare function edgeHoverText(edge: GraphEdge, deletion: DeletionEdge | undefined, nameOf?: (id: string) => string): {
9
+ deletion: {
10
+ bp: string;
11
+ where: string;
12
+ };
13
+ ends?: undefined;
14
+ } | {
15
+ ends: string;
16
+ deletion?: undefined;
17
+ };
@@ -1,6 +1,11 @@
1
1
  export { FIT_PADDING, clampZoom, drawingBounds, engineRequest, fitTransform, forceLayout, layoutExtent, loadGraph, } from './pipeline.js';
2
2
  export type { Bounds, EngineRequest, EngineSettings, LayoutEngine, } from './pipeline.js';
3
3
  export { ENGINE_DEFAULTS, engineSettingsOf } from './pipeline.js';
4
+ export { createForceLayoutCache } from './layout/forceCache.js';
5
+ export { cutsWholeWalks, walkStripApplies } from './layout/walkStrip.js';
6
+ export type { ForceLayoutCache } from './layout/forceCache.js';
7
+ export { edgeHoverText, regionLabel } from './hoverText.js';
8
+ export { layoutGeometryInputs } from './renderer/geometryInputs.js';
4
9
  export { FIGURE_DEFAULTS, figureSpecSettings } from './figureSettings.js';
5
10
  export type { FigureSettings } from './figureSettings.js';
6
11
  export { FORCE_LAYOUT_LABEL, LAYOUT_MODES, layoutModeByValue, modeUsesLayoutEngine, } from './layoutModes.js';
@@ -71,7 +76,7 @@ export type { StripFrame, StripMark } from './layout/walkStrip.js';
71
76
  export { el, serializeEl } from './el.js';
72
77
  export type { El, ElAttrs } from './el.js';
73
78
  export { RAMP_GRADIENT_CSS, rampHue, rampHueCss, rampStops, } from './referenceRampCss.js';
74
- export { walkRowsExtent } from './layout/walkRowLayout.js';
79
+ export { walkRowLabels, walkRowsExtent } from './layout/walkRowLayout.js';
75
80
  export { ROW_HEIGHT_PX } from './layout/rowSpacing.js';
76
81
  export { HALO_FACTOR, LEGEND_INSET_PX, geneCoverageNote, layoutLabels, } from './labelLayout.js';
77
82
  export type { LabelLayout, LabelLayoutSource } from './labelLayout.js';
@@ -0,0 +1,11 @@
1
+ import type { EngineSettings, LayoutEngine } from '../pipeline.js';
2
+ import type { Graph, LayoutResult } from '../types.js';
3
+ export interface ForceLayoutCache {
4
+ layout(graph: Graph, settings: EngineSettings, engine: LayoutEngine): Promise<{
5
+ result: LayoutResult;
6
+ duration: number;
7
+ }>;
8
+ ready(graph: Graph, settings: EngineSettings): LayoutResult | undefined;
9
+ inherit(from: Graph, to: Graph): void;
10
+ }
11
+ export declare function createForceLayoutCache(size?: number): ForceLayoutCache;
@@ -1,10 +1,11 @@
1
1
  import type { RowPitch } from './walkRowDraw.js';
2
2
  import type { WalkRows } from './walkRows.js';
3
- import type { Graph, LayoutResult } from '../types.js';
3
+ import type { Graph, LayoutResult, RowLabel } from '../types.js';
4
4
  export declare function walkRowsExtent(walks: WalkRows, pitch?: Pick<RowPitch, 'rowPx' | 'readouts'>): {
5
5
  maxX: number;
6
6
  maxY: number;
7
7
  };
8
+ export declare function walkRowLabels(rows: WalkRows | undefined, layout?: LayoutResult, pitch?: RowPitch): RowLabel[];
8
9
  export declare function walkRowLayout(graph: Graph, region?: {
9
10
  start: number;
10
11
  end: number;
@@ -1,7 +1,20 @@
1
1
  import type { GeneGaps, RowGene, WalkRowsFrame } from './walkRowDraw.js';
2
2
  import type { WalkRow, WalkRows } from './walkRows.js';
3
+ import type { LayoutMode } from '../layoutModes.js';
3
4
  import type { Graph, GraphNode } from '../types.js';
4
5
  export { LABELLED_ROW_PX } from './walkRowDraw.js';
6
+ export declare function walkStripApplies(o: {
7
+ walkStrip: boolean;
8
+ mode: Pick<LayoutMode, 'drawsNodes'>;
9
+ drawsPicture?: boolean;
10
+ popped?: boolean;
11
+ walks: number;
12
+ host?: boolean;
13
+ }): boolean;
14
+ export declare function cutsWholeWalks(mode: Pick<LayoutMode, 'wholeWalks'>, o: {
15
+ walkStrip: boolean;
16
+ host?: boolean;
17
+ }): boolean;
5
18
  export declare const WALK_STRIP_CEILING_PX = 260;
6
19
  export interface StripMark {
7
20
  row: string;
@@ -0,0 +1,11 @@
1
+ import type { DeletionDrawing } from '../deletionEdges.js';
2
+ import type { LayoutResult } from '../types.js';
3
+ export declare function layoutGeometryInputs(layout: LayoutResult, drawing: DeletionDrawing, o?: {
4
+ drawsRows?: boolean;
5
+ }): {
6
+ nodePositions: Record<string, import("../index.js").NodeSegment[]>;
7
+ deletions: Map<number, string[]>;
8
+ deletionRoutes: Record<number, import("../index.js").NodeSegment[]> | undefined;
9
+ stranded: boolean | undefined;
10
+ hiddenEdges: ReadonlySet<number>;
11
+ };
@@ -1 +1 @@
1
- export declare const version = "7.3.0";
1
+ export declare const version = "7.5.0";
package/dist/version.js CHANGED
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  version
3
- } from "./chunks/chunk-ERHAGG72.js";
3
+ } from "./chunks/chunk-2PEBQ5VA.js";
4
4
  export {
5
5
  version
6
6
  };