@jbrowse/bandage-core 7.3.0 → 7.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (45) hide show
  1. package/dist/chunks/{chunk-36UKA6RQ.js → chunk-3LXG54PN.js} +1 -1
  2. package/dist/chunks/{chunk-AGJZ5RDC.js → chunk-4UBWXZVX.js} +1 -1
  3. package/dist/chunks/{chunk-45J7P6YW.js → chunk-5XHORHYK.js} +34 -39
  4. package/dist/chunks/{chunk-RCPGXIWA.js → chunk-7G7TFATC.js} +2 -2
  5. package/dist/chunks/{chunk-Z3OHBOEA.js → chunk-AVJK272H.js} +1 -1
  6. package/dist/chunks/chunk-AZFVORTC.js +19 -0
  7. package/dist/chunks/{chunk-IW6K4VHZ.js → chunk-FRR2RGBT.js} +1 -1
  8. package/dist/chunks/{chunk-CBBDB3UC.js → chunk-H5S2ONCJ.js} +1 -1
  9. package/dist/chunks/{chunk-O7QXUXGZ.js → chunk-KEVQ46GG.js} +1 -1
  10. package/dist/chunks/{chunk-ERHAGG72.js → chunk-LNSAKOXP.js} +1 -1
  11. package/dist/chunks/chunk-LOCJN3BZ.js +14 -0
  12. package/dist/chunks/{chunk-3JANT2SW.js → chunk-MP7LXLWV.js} +13 -0
  13. package/dist/chunks/{chunk-HPIZNWF7.js → chunk-PY7EZFL3.js} +1 -1
  14. package/dist/chunks/{chunk-5N5YRRFE.js → chunk-UJ6GYL6T.js} +1 -1
  15. package/dist/chunks/chunk-XVSBZ4ZW.js +54 -0
  16. package/dist/chunks/{chunk-C4IUUTAB.js → chunk-ZNMHIPUZ.js} +1 -1
  17. package/dist/cli/figure.js +33 -32
  18. package/dist/figure.js +17 -16
  19. package/dist/figureSettings.js +4 -4
  20. package/dist/hoverText.js +8 -0
  21. package/dist/index.js +92 -76
  22. package/dist/layout/forceCache.js +23 -0
  23. package/dist/layout/walkRowDraw.js +4 -4
  24. package/dist/layout/walkRowLayout.js +3 -1
  25. package/dist/layout/walkStrip.js +5 -5
  26. package/dist/layoutModes.js +2 -2
  27. package/dist/pipeline.js +3 -3
  28. package/dist/referenceRampCss.js +3 -3
  29. package/dist/referenceStrip.js +3 -3
  30. package/dist/renderer/GeometryBuilder.js +2 -2
  31. package/dist/renderer/geometryInputs.js +6 -0
  32. package/dist/tubeMap/nodeColors.js +3 -3
  33. package/dist/types/hoverText.d.ts +17 -0
  34. package/dist/types/index.d.ts +5 -1
  35. package/dist/types/layout/forceCache.d.ts +11 -0
  36. package/dist/types/layout/walkRowLayout.d.ts +2 -1
  37. package/dist/types/renderer/geometryInputs.d.ts +11 -0
  38. package/dist/types/version.d.ts +1 -1
  39. package/dist/version.js +1 -1
  40. package/dist/viewport.js +4 -4
  41. package/dist/walkEncoding.js +3 -3
  42. package/dist/walkHighlight.js +4 -4
  43. package/package.json +1 -1
  44. package/dist/chunks/{chunk-W7R55CIZ.js → chunk-RCWYY6XA.js} +3 -3
  45. package/dist/chunks/{chunk-SGAMPIKO.js → chunk-WZATPZNH.js} +8 -8
package/dist/index.js CHANGED
@@ -1,38 +1,44 @@
1
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  import {
2
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  wheelZoomFactor
3
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  } from "./chunks/chunk-TDQLINVI.js";
4
- import {
5
- tubeMapNodeColors
6
- } from "./chunks/chunk-O7QXUXGZ.js";
7
- import {
8
- connectorAt,
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- drawTubeMapConnectors,
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- referenceNodes,
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- tubeMapConnectors
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- } from "./chunks/chunk-GQ2AOHU4.js";
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  import {
14
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  drawTubeMap,
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  tubeMapPicture
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  } from "./chunks/chunk-CR7EGAFE.js";
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- import "./chunks/chunk-EJ5OZTCK.js";
18
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  import {
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  tubeMapFrame,
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  tubeMapNodeAt
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  } from "./chunks/chunk-VZQ4FKLR.js";
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- import {
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- referenceKnots,
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- warpX
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- } from "./chunks/chunk-KQFOCDFY.js";
26
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  import {
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  drawTubeMapGenes,
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  tubeMapGenes
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  } from "./chunks/chunk-OWFPAIJI.js";
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+ import "./chunks/chunk-EJ5OZTCK.js";
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+ import {
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+ tubeMapNodeColors
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+ } from "./chunks/chunk-KEVQ46GG.js";
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+ import {
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+ referenceKnots,
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+ warpX
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+ } from "./chunks/chunk-KQFOCDFY.js";
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  import {
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  drawTubeMapRuler,
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  referenceBoxes,
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  rulerBoxes,
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  tubeX
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  } from "./chunks/chunk-DRA7733Q.js";
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+ import {
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+ connectorAt,
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+ drawTubeMapConnectors,
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+ referenceNodes,
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+ tubeMapConnectors
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+ } from "./chunks/chunk-GQ2AOHU4.js";
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+ import {
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+ createForceLayoutCache
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+ } from "./chunks/chunk-XVSBZ4ZW.js";
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+ import {
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+ bubbleSubgraph
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+ } from "./chunks/chunk-VHW7FDHU.js";
36
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  import {
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  genesFromBed,
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  genesFromGff3Lines,
@@ -52,15 +58,26 @@ import {
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  classifyBubble
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  } from "./chunks/chunk-WOO7QYKB.js";
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  import "./chunks/chunk-MFKORG3F.js";
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- import {
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- bubbleSubgraph
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- } from "./chunks/chunk-VHW7FDHU.js";
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  import {
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  REFERENCE_STRIP_ZONE_PX,
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  drawReferenceStrip,
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  referenceStripBlocks,
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  stripBlockAt
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- } from "./chunks/chunk-5N5YRRFE.js";
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+ } from "./chunks/chunk-UJ6GYL6T.js";
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+ import {
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+ FORCE_LAYOUT_LABEL,
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+ LAYOUT_MODES,
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+ layoutModeByValue,
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+ modeUsesLayoutEngine
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+ } from "./chunks/chunk-FRR2RGBT.js";
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+ import "./chunks/chunk-LOEA5IHZ.js";
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+ import "./chunks/chunk-AYOSNXLQ.js";
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+ import "./chunks/chunk-TEDQJPMI.js";
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+ import "./chunks/chunk-L3O7AWLI.js";
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+ import "./chunks/chunk-TZFWUT2C.js";
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+ import "./chunks/chunk-C44YRP5F.js";
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+ import "./chunks/chunk-RVS2QCOX.js";
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+ import "./chunks/chunk-HNQPEMYE.js";
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  import {
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  LAYOUT_QUALITIES
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  } from "./chunks/chunk-K5SIJGAE.js";
@@ -78,6 +95,10 @@ import {
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  resolveReferenceSample
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  } from "./chunks/chunk-LTUWJKHD.js";
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  import "./chunks/chunk-WSIFAZU7.js";
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+ import {
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+ edgeHoverText,
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+ regionLabel
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+ } from "./chunks/chunk-AZFVORTC.js";
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  import {
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  LAYOUT_ENGINES,
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  layoutEngine
@@ -89,23 +110,15 @@ import "./chunks/chunk-LYJ4US66.js";
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  import {
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  loadBandage
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  } from "./chunks/chunk-7XHHVYG7.js";
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- import {
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- FORCE_LAYOUT_LABEL,
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- LAYOUT_MODES,
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- layoutModeByValue,
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- modeUsesLayoutEngine
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- } from "./chunks/chunk-IW6K4VHZ.js";
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- import "./chunks/chunk-LOEA5IHZ.js";
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- import "./chunks/chunk-AYOSNXLQ.js";
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- import "./chunks/chunk-TEDQJPMI.js";
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- import "./chunks/chunk-L3O7AWLI.js";
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- import "./chunks/chunk-TZFWUT2C.js";
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- import "./chunks/chunk-C44YRP5F.js";
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- import "./chunks/chunk-RVS2QCOX.js";
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- import "./chunks/chunk-HNQPEMYE.js";
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  import {
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  figureSvg
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- } from "./chunks/chunk-45J7P6YW.js";
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+ } from "./chunks/chunk-5XHORHYK.js";
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+ import {
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+ layoutGeometryInputs
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+ } from "./chunks/chunk-LOCJN3BZ.js";
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+ import {
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+ svgCanvas
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+ } from "./chunks/chunk-47DYCZOK.js";
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  import {
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  WALK_STRIP_CEILING_PX,
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  segmentAt,
@@ -115,16 +128,7 @@ import {
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  walkMarksTree,
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  walkStripFrame,
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  walkStripLabelsTree
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- } from "./chunks/chunk-HPIZNWF7.js";
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- import {
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- Canvas2DRenderer
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- } from "./chunks/chunk-CH3DLBUT.js";
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- import {
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- getDpr
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- } from "./chunks/chunk-4BYTEJGW.js";
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- import {
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- svgCanvas
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- } from "./chunks/chunk-47DYCZOK.js";
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+ } from "./chunks/chunk-PY7EZFL3.js";
128
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  import {
129
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  BAR_PX,
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  CALL_TICK,
@@ -151,7 +155,13 @@ import {
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  walkRowsKey,
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  walkRowsKeyTree,
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  walkRowsTree
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- } from "./chunks/chunk-RCPGXIWA.js";
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+ } from "./chunks/chunk-7G7TFATC.js";
159
+ import {
160
+ Canvas2DRenderer
161
+ } from "./chunks/chunk-CH3DLBUT.js";
162
+ import {
163
+ getDpr
164
+ } from "./chunks/chunk-4BYTEJGW.js";
155
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  import {
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  EXON_COLOR,
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  exonOutlineTree,
@@ -164,7 +174,15 @@ import {
164
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  facetLifts,
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  walkHighlight,
166
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  walkLift
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- } from "./chunks/chunk-36UKA6RQ.js";
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+ } from "./chunks/chunk-3LXG54PN.js";
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+ import {
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+ WALK_FIELDS,
180
+ WALK_SCHEMES,
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+ encodingStops,
182
+ encodingSwatchCss,
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+ resolveEncoding,
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+ schemeCss
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+ } from "./chunks/chunk-ZNMHIPUZ.js";
168
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  import {
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  rangeText,
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  walkKey,
@@ -175,10 +193,16 @@ import {
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  rampHue,
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  rampHueCss,
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  rampStops
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- } from "./chunks/chunk-Z3OHBOEA.js";
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+ } from "./chunks/chunk-AVJK272H.js";
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+ import {
198
+ REFERENCE_RAMP_MAX_HUE,
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+ buildGeometry,
200
+ computeReferenceRamp
201
+ } from "./chunks/chunk-RCWYY6XA.js";
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+ import "./chunks/chunk-UMNCCYBN.js";
179
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  import {
180
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  version
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- } from "./chunks/chunk-ERHAGG72.js";
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+ } from "./chunks/chunk-LNSAKOXP.js";
182
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  import {
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  axisScaleOf,
184
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  contains,
@@ -186,21 +210,15 @@ import {
186
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  screenToLayout,
187
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  viewportOf,
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  zoomAbout
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- } from "./chunks/chunk-AGJZ5RDC.js";
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+ } from "./chunks/chunk-4UBWXZVX.js";
190
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  import {
191
- WALK_FIELDS,
192
- WALK_SCHEMES,
193
- encodingStops,
194
- encodingSwatchCss,
195
- resolveEncoding,
196
- schemeCss
197
- } from "./chunks/chunk-C4IUUTAB.js";
215
+ walkRowLabels,
216
+ walkRowsExtent
217
+ } from "./chunks/chunk-MP7LXLWV.js";
198
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  import {
199
- REFERENCE_RAMP_MAX_HUE,
200
- buildGeometry,
201
- computeReferenceRamp
202
- } from "./chunks/chunk-W7R55CIZ.js";
203
- import "./chunks/chunk-UMNCCYBN.js";
219
+ filterSamples,
220
+ walkRows
221
+ } from "./chunks/chunk-SZNZ2T6D.js";
204
222
  import {
205
223
  NODE_WIDTHS,
206
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  maxNodeWidthPx,
@@ -208,6 +226,11 @@ import {
208
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  nodeInk,
209
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  nodeWidthPx
210
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  } from "./chunks/chunk-PBENCR5L.js";
229
+ import {
230
+ pathColorsLegible,
231
+ pathLegend,
232
+ walkLabelsOf
233
+ } from "./chunks/chunk-7GBL7SJY.js";
211
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  import {
212
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  WELL_KNOWN_SAMPLES,
213
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  assemblyWalk,
@@ -230,18 +253,6 @@ import {
230
253
  } from "./chunks/chunk-FP4H7SFT.js";
231
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  import "./chunks/chunk-MLSWIMZO.js";
232
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  import "./chunks/chunk-WFB5TXRA.js";
233
- import {
234
- walkRowsExtent
235
- } from "./chunks/chunk-3JANT2SW.js";
236
- import {
237
- filterSamples,
238
- walkRows
239
- } from "./chunks/chunk-SZNZ2T6D.js";
240
- import {
241
- pathColorsLegible,
242
- pathLegend,
243
- walkLabelsOf
244
- } from "./chunks/chunk-7GBL7SJY.js";
245
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  import {
246
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  formatBp
247
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  } from "./chunks/chunk-3ZZSX5HN.js";
@@ -269,7 +280,7 @@ import {
269
280
  import {
270
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  FIGURE_DEFAULTS,
271
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  figureSpecSettings
272
- } from "./chunks/chunk-CBBDB3UC.js";
283
+ } from "./chunks/chunk-H5S2ONCJ.js";
273
284
  import {
274
285
  ENGINE_DEFAULTS,
275
286
  FIT_PADDING,
@@ -282,13 +293,12 @@ import {
282
293
  forceLayout,
283
294
  layoutExtent,
284
295
  loadGraph
285
- } from "./chunks/chunk-SGAMPIKO.js";
286
- import "./chunks/chunk-PUG7LXDF.js";
296
+ } from "./chunks/chunk-WZATPZNH.js";
287
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  import "./chunks/chunk-IGVV37VI.js";
298
+ import "./chunks/chunk-PUG7LXDF.js";
288
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  import "./chunks/chunk-72N5DJHZ.js";
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  import "./chunks/chunk-QYBZZI5H.js";
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  import "./chunks/chunk-CDLPYR5O.js";
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- import "./chunks/chunk-JVLURPFW.js";
292
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  import "./chunks/chunk-ES2N6V56.js";
293
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  import "./chunks/chunk-ST2IBUAN.js";
294
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  import {
@@ -297,6 +307,7 @@ import {
297
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  panSNSample
298
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  } from "./chunks/chunk-BPLIXMH7.js";
299
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  import "./chunks/chunk-TAMCZHLW.js";
310
+ import "./chunks/chunk-JVLURPFW.js";
300
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  import {
301
312
  BUBBLE_SPREADS
302
313
  } from "./chunks/chunk-UVBGRJQX.js";
@@ -368,6 +379,7 @@ export {
368
379
  computeReferenceRamp,
369
380
  connectorAt,
370
381
  contains,
382
+ createForceLayoutCache,
371
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  cutGbzRegion,
372
384
  cutWindowGFA,
373
385
  deletionDrawing,
@@ -378,6 +390,7 @@ export {
378
390
  drawTubeMapGenes,
379
391
  drawTubeMapRuler,
380
392
  drawingBounds,
393
+ edgeHoverText,
381
394
  el,
382
395
  encodingStops,
383
396
  encodingSwatchCss,
@@ -410,6 +423,7 @@ export {
410
423
  haplotypeWanted,
411
424
  layoutEngine,
412
425
  layoutExtent,
426
+ layoutGeometryInputs,
413
427
  layoutLabels,
414
428
  layoutModeByValue,
415
429
  loadBandage,
@@ -442,6 +456,7 @@ export {
442
456
  referencePathQuery,
443
457
  referenceSamplesOf,
444
458
  referenceStripBlocks,
459
+ regionLabel,
445
460
  resolveColorScheme,
446
461
  resolveEncoding,
447
462
  resolveReferenceSample,
@@ -476,6 +491,7 @@ export {
476
491
  walkLift,
477
492
  walkMarksTree,
478
493
  walkPosition,
494
+ walkRowLabels,
479
495
  walkRowReadout,
480
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  walkRows,
481
497
  walkRowsExtent,
@@ -0,0 +1,23 @@
1
+ import {
2
+ createForceLayoutCache
3
+ } from "../chunks/chunk-XVSBZ4ZW.js";
4
+ import "../chunks/chunk-WZATPZNH.js";
5
+ import "../chunks/chunk-IGVV37VI.js";
6
+ import "../chunks/chunk-PUG7LXDF.js";
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+ import "../chunks/chunk-72N5DJHZ.js";
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+ import "../chunks/chunk-QYBZZI5H.js";
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+ import "../chunks/chunk-CDLPYR5O.js";
10
+ import "../chunks/chunk-ES2N6V56.js";
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+ import "../chunks/chunk-ST2IBUAN.js";
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+ import "../chunks/chunk-BPLIXMH7.js";
13
+ import "../chunks/chunk-TAMCZHLW.js";
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+ import "../chunks/chunk-JVLURPFW.js";
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+ import "../chunks/chunk-UVBGRJQX.js";
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+ import "../chunks/chunk-6JEWNXCQ.js";
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+ import "../chunks/chunk-N6FECAXP.js";
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+ import "../chunks/chunk-2CVHXFK7.js";
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+ import "../chunks/chunk-CPMHA4W5.js";
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+ import "../chunks/chunk-FYQWPEEY.js";
21
+ export {
22
+ createForceLayoutCache
23
+ };
@@ -26,13 +26,13 @@ import {
26
26
  walkRowsKey,
27
27
  walkRowsKeyTree,
28
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  walkRowsTree
29
- } from "../chunks/chunk-RCPGXIWA.js";
30
- import "../chunks/chunk-Z3OHBOEA.js";
31
- import "../chunks/chunk-W7R55CIZ.js";
29
+ } from "../chunks/chunk-7G7TFATC.js";
30
+ import "../chunks/chunk-AVJK272H.js";
31
+ import "../chunks/chunk-RCWYY6XA.js";
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  import "../chunks/chunk-UMNCCYBN.js";
33
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  import "../chunks/chunk-PBENCR5L.js";
34
- import "../chunks/chunk-WFB5TXRA.js";
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  import "../chunks/chunk-7GBL7SJY.js";
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+ import "../chunks/chunk-WFB5TXRA.js";
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  import "../chunks/chunk-3ZZSX5HN.js";
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  import "../chunks/chunk-AB35TJST.js";
38
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  import "../chunks/chunk-NNODIW4U.js";
@@ -1,13 +1,15 @@
1
1
  import {
2
+ walkRowLabels,
2
3
  walkRowLayout,
3
4
  walkRowsExtent
4
- } from "../chunks/chunk-3JANT2SW.js";
5
+ } from "../chunks/chunk-MP7LXLWV.js";
5
6
  import "../chunks/chunk-SZNZ2T6D.js";
6
7
  import "../chunks/chunk-ST2IBUAN.js";
7
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  import "../chunks/chunk-BPLIXMH7.js";
8
9
  import "../chunks/chunk-CPMHA4W5.js";
9
10
  import "../chunks/chunk-FYQWPEEY.js";
10
11
  export {
12
+ walkRowLabels,
11
13
  walkRowLayout,
12
14
  walkRowsExtent
13
15
  };
@@ -7,16 +7,16 @@ import {
7
7
  walkMarksTree,
8
8
  walkStripFrame,
9
9
  walkStripLabelsTree
10
- } from "../chunks/chunk-HPIZNWF7.js";
10
+ } from "../chunks/chunk-PY7EZFL3.js";
11
11
  import {
12
12
  LABELLED_ROW_PX
13
- } from "../chunks/chunk-RCPGXIWA.js";
14
- import "../chunks/chunk-Z3OHBOEA.js";
15
- import "../chunks/chunk-W7R55CIZ.js";
13
+ } from "../chunks/chunk-7G7TFATC.js";
14
+ import "../chunks/chunk-AVJK272H.js";
15
+ import "../chunks/chunk-RCWYY6XA.js";
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  import "../chunks/chunk-UMNCCYBN.js";
17
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  import "../chunks/chunk-PBENCR5L.js";
18
- import "../chunks/chunk-WFB5TXRA.js";
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  import "../chunks/chunk-7GBL7SJY.js";
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+ import "../chunks/chunk-WFB5TXRA.js";
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  import "../chunks/chunk-3ZZSX5HN.js";
21
21
  import "../chunks/chunk-AB35TJST.js";
22
22
  import "../chunks/chunk-NNODIW4U.js";
@@ -4,7 +4,7 @@ import {
4
4
  LAYOUT_MODE_VALUES,
5
5
  layoutModeByValue,
6
6
  modeUsesLayoutEngine
7
- } from "./chunks/chunk-IW6K4VHZ.js";
7
+ } from "./chunks/chunk-FRR2RGBT.js";
8
8
  import "./chunks/chunk-LOEA5IHZ.js";
9
9
  import "./chunks/chunk-AYOSNXLQ.js";
10
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  import "./chunks/chunk-TEDQJPMI.js";
@@ -13,7 +13,7 @@ import "./chunks/chunk-TZFWUT2C.js";
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  import "./chunks/chunk-C44YRP5F.js";
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  import "./chunks/chunk-RVS2QCOX.js";
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  import "./chunks/chunk-HNQPEMYE.js";
16
- import "./chunks/chunk-3JANT2SW.js";
16
+ import "./chunks/chunk-MP7LXLWV.js";
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  import "./chunks/chunk-SZNZ2T6D.js";
18
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  import "./chunks/chunk-7GBL7SJY.js";
19
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  import "./chunks/chunk-3ZZSX5HN.js";
package/dist/pipeline.js CHANGED
@@ -11,17 +11,17 @@ import {
11
11
  forceLayout,
12
12
  layoutExtent,
13
13
  loadGraph
14
- } from "./chunks/chunk-SGAMPIKO.js";
15
- import "./chunks/chunk-PUG7LXDF.js";
14
+ } from "./chunks/chunk-WZATPZNH.js";
16
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  import "./chunks/chunk-IGVV37VI.js";
16
+ import "./chunks/chunk-PUG7LXDF.js";
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  import "./chunks/chunk-72N5DJHZ.js";
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  import "./chunks/chunk-QYBZZI5H.js";
19
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  import "./chunks/chunk-CDLPYR5O.js";
20
- import "./chunks/chunk-JVLURPFW.js";
21
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  import "./chunks/chunk-ES2N6V56.js";
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  import "./chunks/chunk-ST2IBUAN.js";
23
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  import "./chunks/chunk-BPLIXMH7.js";
24
23
  import "./chunks/chunk-TAMCZHLW.js";
24
+ import "./chunks/chunk-JVLURPFW.js";
25
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  import "./chunks/chunk-UVBGRJQX.js";
26
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  import "./chunks/chunk-6JEWNXCQ.js";
27
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  import "./chunks/chunk-N6FECAXP.js";
@@ -4,12 +4,12 @@ import {
4
4
  rampHue,
5
5
  rampHueCss,
6
6
  rampStops
7
- } from "./chunks/chunk-Z3OHBOEA.js";
8
- import "./chunks/chunk-W7R55CIZ.js";
7
+ } from "./chunks/chunk-AVJK272H.js";
8
+ import "./chunks/chunk-RCWYY6XA.js";
9
9
  import "./chunks/chunk-UMNCCYBN.js";
10
10
  import "./chunks/chunk-PBENCR5L.js";
11
- import "./chunks/chunk-WFB5TXRA.js";
12
11
  import "./chunks/chunk-7GBL7SJY.js";
12
+ import "./chunks/chunk-WFB5TXRA.js";
13
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  import "./chunks/chunk-3ZZSX5HN.js";
14
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  import "./chunks/chunk-AB35TJST.js";
15
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  import "./chunks/chunk-ES2N6V56.js";
@@ -7,12 +7,12 @@ import {
7
7
  stripBlockAt,
8
8
  stripOverhang,
9
9
  stripPixels
10
- } from "./chunks/chunk-5N5YRRFE.js";
11
- import "./chunks/chunk-W7R55CIZ.js";
10
+ } from "./chunks/chunk-UJ6GYL6T.js";
11
+ import "./chunks/chunk-RCWYY6XA.js";
12
12
  import "./chunks/chunk-UMNCCYBN.js";
13
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  import "./chunks/chunk-PBENCR5L.js";
14
- import "./chunks/chunk-WFB5TXRA.js";
15
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  import "./chunks/chunk-7GBL7SJY.js";
15
+ import "./chunks/chunk-WFB5TXRA.js";
16
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  import "./chunks/chunk-3ZZSX5HN.js";
17
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  import "./chunks/chunk-AB35TJST.js";
18
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  import "./chunks/chunk-ES2N6V56.js";
@@ -11,11 +11,11 @@ import {
11
11
  endTangent,
12
12
  getNodeColor,
13
13
  hslToRgb
14
- } from "../chunks/chunk-W7R55CIZ.js";
14
+ } from "../chunks/chunk-RCWYY6XA.js";
15
15
  import "../chunks/chunk-UMNCCYBN.js";
16
16
  import "../chunks/chunk-PBENCR5L.js";
17
- import "../chunks/chunk-WFB5TXRA.js";
18
17
  import "../chunks/chunk-7GBL7SJY.js";
18
+ import "../chunks/chunk-WFB5TXRA.js";
19
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  import "../chunks/chunk-3ZZSX5HN.js";
20
20
  import "../chunks/chunk-AB35TJST.js";
21
21
  import "../chunks/chunk-ES2N6V56.js";
@@ -0,0 +1,6 @@
1
+ import {
2
+ layoutGeometryInputs
3
+ } from "../chunks/chunk-LOCJN3BZ.js";
4
+ export {
5
+ layoutGeometryInputs
6
+ };
@@ -1,11 +1,11 @@
1
1
  import {
2
2
  tubeMapNodeColors
3
- } from "../chunks/chunk-O7QXUXGZ.js";
4
- import "../chunks/chunk-W7R55CIZ.js";
3
+ } from "../chunks/chunk-KEVQ46GG.js";
4
+ import "../chunks/chunk-RCWYY6XA.js";
5
5
  import "../chunks/chunk-UMNCCYBN.js";
6
6
  import "../chunks/chunk-PBENCR5L.js";
7
- import "../chunks/chunk-WFB5TXRA.js";
8
7
  import "../chunks/chunk-7GBL7SJY.js";
8
+ import "../chunks/chunk-WFB5TXRA.js";
9
9
  import "../chunks/chunk-3ZZSX5HN.js";
10
10
  import "../chunks/chunk-AB35TJST.js";
11
11
  import "../chunks/chunk-ES2N6V56.js";
@@ -0,0 +1,17 @@
1
+ import type { DeletionEdge } from './deletionEdges.js';
2
+ import type { GraphEdge } from './types.js';
3
+ export declare function regionLabel(loc: {
4
+ refName: string;
5
+ start: number;
6
+ end: number;
7
+ }): string;
8
+ export declare function edgeHoverText(edge: GraphEdge, deletion: DeletionEdge | undefined, nameOf?: (id: string) => string): {
9
+ deletion: {
10
+ bp: string;
11
+ where: string;
12
+ };
13
+ ends?: undefined;
14
+ } | {
15
+ ends: string;
16
+ deletion?: undefined;
17
+ };
@@ -1,6 +1,10 @@
1
1
  export { FIT_PADDING, clampZoom, drawingBounds, engineRequest, fitTransform, forceLayout, layoutExtent, loadGraph, } from './pipeline.js';
2
2
  export type { Bounds, EngineRequest, EngineSettings, LayoutEngine, } from './pipeline.js';
3
3
  export { ENGINE_DEFAULTS, engineSettingsOf } from './pipeline.js';
4
+ export { createForceLayoutCache } from './layout/forceCache.js';
5
+ export type { ForceLayoutCache } from './layout/forceCache.js';
6
+ export { edgeHoverText, regionLabel } from './hoverText.js';
7
+ export { layoutGeometryInputs } from './renderer/geometryInputs.js';
4
8
  export { FIGURE_DEFAULTS, figureSpecSettings } from './figureSettings.js';
5
9
  export type { FigureSettings } from './figureSettings.js';
6
10
  export { FORCE_LAYOUT_LABEL, LAYOUT_MODES, layoutModeByValue, modeUsesLayoutEngine, } from './layoutModes.js';
@@ -71,7 +75,7 @@ export type { StripFrame, StripMark } from './layout/walkStrip.js';
71
75
  export { el, serializeEl } from './el.js';
72
76
  export type { El, ElAttrs } from './el.js';
73
77
  export { RAMP_GRADIENT_CSS, rampHue, rampHueCss, rampStops, } from './referenceRampCss.js';
74
- export { walkRowsExtent } from './layout/walkRowLayout.js';
78
+ export { walkRowLabels, walkRowsExtent } from './layout/walkRowLayout.js';
75
79
  export { ROW_HEIGHT_PX } from './layout/rowSpacing.js';
76
80
  export { HALO_FACTOR, LEGEND_INSET_PX, geneCoverageNote, layoutLabels, } from './labelLayout.js';
77
81
  export type { LabelLayout, LabelLayoutSource } from './labelLayout.js';
@@ -0,0 +1,11 @@
1
+ import type { EngineSettings, LayoutEngine } from '../pipeline.js';
2
+ import type { Graph, LayoutResult } from '../types.js';
3
+ export interface ForceLayoutCache {
4
+ layout(graph: Graph, settings: EngineSettings, engine: LayoutEngine): Promise<{
5
+ result: LayoutResult;
6
+ duration: number;
7
+ }>;
8
+ ready(graph: Graph, settings: EngineSettings): LayoutResult | undefined;
9
+ inherit(from: Graph, to: Graph): void;
10
+ }
11
+ export declare function createForceLayoutCache(size?: number): ForceLayoutCache;
@@ -1,10 +1,11 @@
1
1
  import type { RowPitch } from './walkRowDraw.js';
2
2
  import type { WalkRows } from './walkRows.js';
3
- import type { Graph, LayoutResult } from '../types.js';
3
+ import type { Graph, LayoutResult, RowLabel } from '../types.js';
4
4
  export declare function walkRowsExtent(walks: WalkRows, pitch?: Pick<RowPitch, 'rowPx' | 'readouts'>): {
5
5
  maxX: number;
6
6
  maxY: number;
7
7
  };
8
+ export declare function walkRowLabels(rows: WalkRows | undefined, layout?: LayoutResult, pitch?: RowPitch): RowLabel[];
8
9
  export declare function walkRowLayout(graph: Graph, region?: {
9
10
  start: number;
10
11
  end: number;
@@ -0,0 +1,11 @@
1
+ import type { DeletionDrawing } from '../deletionEdges.js';
2
+ import type { LayoutResult } from '../types.js';
3
+ export declare function layoutGeometryInputs(layout: LayoutResult, drawing: DeletionDrawing, o?: {
4
+ drawsRows?: boolean;
5
+ }): {
6
+ nodePositions: Record<string, import("../index.js").NodeSegment[]>;
7
+ deletions: Map<number, string[]>;
8
+ deletionRoutes: Record<number, import("../index.js").NodeSegment[]> | undefined;
9
+ stranded: boolean | undefined;
10
+ hiddenEdges: ReadonlySet<number>;
11
+ };
@@ -1 +1 @@
1
- export declare const version = "7.3.0";
1
+ export declare const version = "7.4.0";
package/dist/version.js CHANGED
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  version
3
- } from "./chunks/chunk-ERHAGG72.js";
3
+ } from "./chunks/chunk-LNSAKOXP.js";
4
4
  export {
5
5
  version
6
6
  };
package/dist/viewport.js CHANGED
@@ -5,18 +5,18 @@ import {
5
5
  screenToLayout,
6
6
  viewportOf,
7
7
  zoomAbout
8
- } from "./chunks/chunk-AGJZ5RDC.js";
9
- import "./chunks/chunk-SGAMPIKO.js";
10
- import "./chunks/chunk-PUG7LXDF.js";
8
+ } from "./chunks/chunk-4UBWXZVX.js";
9
+ import "./chunks/chunk-WZATPZNH.js";
11
10
  import "./chunks/chunk-IGVV37VI.js";
11
+ import "./chunks/chunk-PUG7LXDF.js";
12
12
  import "./chunks/chunk-72N5DJHZ.js";
13
13
  import "./chunks/chunk-QYBZZI5H.js";
14
14
  import "./chunks/chunk-CDLPYR5O.js";
15
- import "./chunks/chunk-JVLURPFW.js";
16
15
  import "./chunks/chunk-ES2N6V56.js";
17
16
  import "./chunks/chunk-ST2IBUAN.js";
18
17
  import "./chunks/chunk-BPLIXMH7.js";
19
18
  import "./chunks/chunk-TAMCZHLW.js";
19
+ import "./chunks/chunk-JVLURPFW.js";
20
20
  import "./chunks/chunk-UVBGRJQX.js";
21
21
  import "./chunks/chunk-6JEWNXCQ.js";
22
22
  import "./chunks/chunk-N6FECAXP.js";
@@ -9,12 +9,12 @@ import {
9
9
  schemeColor,
10
10
  schemeCss,
11
11
  schemeRgb
12
- } from "./chunks/chunk-C4IUUTAB.js";
13
- import "./chunks/chunk-W7R55CIZ.js";
12
+ } from "./chunks/chunk-ZNMHIPUZ.js";
13
+ import "./chunks/chunk-RCWYY6XA.js";
14
14
  import "./chunks/chunk-UMNCCYBN.js";
15
15
  import "./chunks/chunk-PBENCR5L.js";
16
- import "./chunks/chunk-WFB5TXRA.js";
17
16
  import "./chunks/chunk-7GBL7SJY.js";
17
+ import "./chunks/chunk-WFB5TXRA.js";
18
18
  import "./chunks/chunk-3ZZSX5HN.js";
19
19
  import "./chunks/chunk-AB35TJST.js";
20
20
  import "./chunks/chunk-ES2N6V56.js";
@@ -2,13 +2,13 @@ import {
2
2
  facetLifts,
3
3
  walkHighlight,
4
4
  walkLift
5
- } from "./chunks/chunk-36UKA6RQ.js";
6
- import "./chunks/chunk-C4IUUTAB.js";
7
- import "./chunks/chunk-W7R55CIZ.js";
5
+ } from "./chunks/chunk-3LXG54PN.js";
6
+ import "./chunks/chunk-ZNMHIPUZ.js";
7
+ import "./chunks/chunk-RCWYY6XA.js";
8
8
  import "./chunks/chunk-UMNCCYBN.js";
9
9
  import "./chunks/chunk-PBENCR5L.js";
10
- import "./chunks/chunk-WFB5TXRA.js";
11
10
  import "./chunks/chunk-7GBL7SJY.js";
11
+ import "./chunks/chunk-WFB5TXRA.js";
12
12
  import "./chunks/chunk-3ZZSX5HN.js";
13
13
  import "./chunks/chunk-AB35TJST.js";
14
14
  import "./chunks/chunk-ES2N6V56.js";