@jbrowse/bandage-core 7.2.0 → 7.3.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/chunks/{chunk-MH5IA57M.js → chunk-36UKA6RQ.js} +1 -1
- package/dist/chunks/{chunk-QMJ4J5PT.js → chunk-45J7P6YW.js} +36 -37
- package/dist/chunks/{chunk-EXSXBIMH.js → chunk-5N5YRRFE.js} +1 -1
- package/dist/chunks/{chunk-E7FWQQHP.js → chunk-7GBL7SJY.js} +15 -4
- package/dist/chunks/{chunk-Y7UR3MDE.js → chunk-AGJZ5RDC.js} +1 -1
- package/dist/chunks/{chunk-4FQTTG5F.js → chunk-AYOSNXLQ.js} +1 -1
- package/dist/chunks/{chunk-TQ7VCGJR.js → chunk-C4IUUTAB.js} +1 -1
- package/dist/chunks/chunk-CBBDB3UC.js +27 -0
- package/dist/chunks/{chunk-S73EYTZA.js → chunk-ERHAGG72.js} +1 -1
- package/dist/chunks/{chunk-KREASK3Z.js → chunk-HPIZNWF7.js} +4 -4
- package/dist/chunks/{chunk-JKXE6CIP.js → chunk-IW6K4VHZ.js} +4 -4
- package/dist/chunks/chunk-K5SIJGAE.js +12 -0
- package/dist/chunks/{chunk-CNQSHEBS.js → chunk-O7QXUXGZ.js} +1 -1
- package/dist/chunks/{chunk-UGD6ZMOF.js → chunk-RCPGXIWA.js} +6 -7
- package/dist/chunks/{chunk-EPWYRSHH.js → chunk-SGAMPIKO.js} +22 -0
- package/dist/chunks/{chunk-VST5SR4C.js → chunk-W7R55CIZ.js} +1 -1
- package/dist/chunks/{chunk-VECR253P.js → chunk-Z3OHBOEA.js} +1 -1
- package/dist/cli/figure.js +47 -58
- package/dist/figure.js +24 -24
- package/dist/figureSettings.js +25 -0
- package/dist/index.js +122 -106
- package/dist/layout/tubeMapLayout.js +4 -4
- package/dist/layout/walkRowDraw.js +8 -8
- package/dist/layout/walkRowLayout.js +1 -1
- package/dist/layout/walkStrip.js +9 -9
- package/dist/layoutModes.js +8 -8
- package/dist/layoutQualities.js +6 -0
- package/dist/pathColors.js +7 -5
- package/dist/pipeline.js +6 -2
- package/dist/referenceRampCss.js +6 -6
- package/dist/referenceStrip.js +6 -6
- package/dist/renderer/GeometryBuilder.js +5 -5
- package/dist/tubeMap/coarsen.js +5 -5
- package/dist/tubeMap/nodeColors.js +6 -6
- package/dist/types/figure.d.ts +1 -0
- package/dist/types/figureSettings.d.ts +15 -0
- package/dist/types/index.d.ts +6 -1
- package/dist/types/layoutQualities.d.ts +17 -0
- package/dist/types/pathColors.d.ts +4 -0
- package/dist/types/pipeline.d.ts +2 -0
- package/dist/types/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/dist/viewport.js +3 -3
- package/dist/walkEncoding.js +6 -6
- package/dist/walkHighlight.js +7 -7
- package/package.json +1 -1
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import {
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FIGURE_DEFAULTS,
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figureSpecSettings
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} from "./chunks/chunk-CBBDB3UC.js";
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import "./chunks/chunk-SGAMPIKO.js";
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import "./chunks/chunk-PUG7LXDF.js";
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import "./chunks/chunk-IGVV37VI.js";
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import "./chunks/chunk-72N5DJHZ.js";
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import "./chunks/chunk-QYBZZI5H.js";
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import "./chunks/chunk-CDLPYR5O.js";
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import "./chunks/chunk-JVLURPFW.js";
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import "./chunks/chunk-ES2N6V56.js";
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import "./chunks/chunk-ST2IBUAN.js";
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import "./chunks/chunk-BPLIXMH7.js";
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import "./chunks/chunk-TAMCZHLW.js";
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import "./chunks/chunk-UVBGRJQX.js";
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import "./chunks/chunk-6JEWNXCQ.js";
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import "./chunks/chunk-N6FECAXP.js";
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import "./chunks/chunk-2CVHXFK7.js";
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import "./chunks/chunk-CPMHA4W5.js";
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import "./chunks/chunk-FYQWPEEY.js";
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export {
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FIGURE_DEFAULTS,
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figureSpecSettings
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};
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package/dist/index.js
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import {
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wheelZoomFactor
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} from "./chunks/chunk-TDQLINVI.js";
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import {
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tubeMapNodeColors
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} from "./chunks/chunk-O7QXUXGZ.js";
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import {
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connectorAt,
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drawTubeMapConnectors,
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drawTubeMap,
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tubeMapPicture
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} from "./chunks/chunk-CR7EGAFE.js";
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import "./chunks/chunk-EJ5OZTCK.js";
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import {
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tubeMapFrame,
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tubeMapNodeAt
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drawTubeMapGenes,
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tubeMapGenes
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} from "./chunks/chunk-OWFPAIJI.js";
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import "./chunks/chunk-EJ5OZTCK.js";
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import {
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tubeMapNodeColors
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} from "./chunks/chunk-CNQSHEBS.js";
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import {
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drawTubeMapRuler,
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referenceBoxes,
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rulerBoxes,
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tubeX
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} from "./chunks/chunk-DRA7733Q.js";
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import {
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genesFromBed,
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genesFromGff3Lines,
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genesFromText,
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mergeOverlappingByName
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} from "./chunks/chunk-BXEPA4KS.js";
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import {
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bubbleHalos
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import {
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bubbleSubgraph
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import {
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genesFromBed,
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genesFromGff3Lines,
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genesFromText,
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mergeOverlappingByName
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} from "./chunks/chunk-BXEPA4KS.js";
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import {
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REFERENCE_STRIP_ZONE_PX,
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drawReferenceStrip,
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referenceStripBlocks,
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stripBlockAt
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} from "./chunks/chunk-
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} from "./chunks/chunk-5N5YRRFE.js";
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import {
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LAYOUT_QUALITIES
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} from "./chunks/chunk-K5SIJGAE.js";
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import {
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HPRC_GBZ,
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cutGbzRegion,
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openGbz,
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parseRegion
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} from "./chunks/chunk-73RSLGZT.js";
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import {
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cutWindowGFA,
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haplotypeWanted,
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referencePathQuery,
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referenceSamplesOf,
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resolveReferenceSample
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} from "./chunks/chunk-LTUWJKHD.js";
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import "./chunks/chunk-WSIFAZU7.js";
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layoutEngine
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stressLayout
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} from "./chunks/chunk-UNOE2NDN.js";
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import "./chunks/chunk-LYJ4US66.js";
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import {
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loadBandage
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} from "./chunks/chunk-7XHHVYG7.js";
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layoutModeByValue,
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modeUsesLayoutEngine
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} from "./chunks/chunk-IW6K4VHZ.js";
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import "./chunks/chunk-HNQPEMYE.js";
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@@ -5,18 +5,18 @@ import {
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|
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} from "../chunks/chunk-
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walkRowsTree
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47
|
export {
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48
48
|
BAR_PX,
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|
|
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4
4
|
} from "../chunks/chunk-3JANT2SW.js";
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5
|
import "../chunks/chunk-SZNZ2T6D.js";
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+
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|
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10
10
|
export {
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11
|
walkRowLayout,
|
package/dist/layout/walkStrip.js
CHANGED
|
@@ -7,26 +7,26 @@ import {
|
|
|
7
7
|
walkMarksTree,
|
|
8
8
|
walkStripFrame,
|
|
9
9
|
walkStripLabelsTree
|
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10
|
-
} from "../chunks/chunk-
|
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|
+
} from "../chunks/chunk-HPIZNWF7.js";
|
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11
11
|
import {
|
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12
12
|
LABELLED_ROW_PX
|
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13
|
-
} from "../chunks/chunk-
|
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14
|
-
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|
|
15
|
-
import "../chunks/chunk-
|
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13
|
+
} from "../chunks/chunk-RCPGXIWA.js";
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import "../chunks/chunk-Z3OHBOEA.js";
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import "../chunks/chunk-WFB5TXRA.js";
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import "../chunks/chunk-
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-
import "../chunks/chunk-ES2N6V56.js";
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-
import "../chunks/chunk-ST2IBUAN.js";
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|
+
import "../chunks/chunk-7GBL7SJY.js";
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20
|
import "../chunks/chunk-3ZZSX5HN.js";
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21
|
import "../chunks/chunk-AB35TJST.js";
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+
import "../chunks/chunk-NNODIW4U.js";
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|
+
import "../chunks/chunk-ES2N6V56.js";
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+
import "../chunks/chunk-ST2IBUAN.js";
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+
import "../chunks/chunk-BPLIXMH7.js";
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|
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27
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import "../chunks/chunk-NNODIW4U.js";
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|
-
import "../chunks/chunk-BPLIXMH7.js";
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|
import "../chunks/chunk-FYQWPEEY.js";
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|
31
31
|
export {
|
|
32
32
|
LABELLED_ROW_PX,
|
package/dist/layoutModes.js
CHANGED
|
@@ -4,27 +4,27 @@ import {
|
|
|
4
4
|
LAYOUT_MODE_VALUES,
|
|
5
5
|
layoutModeByValue,
|
|
6
6
|
modeUsesLayoutEngine
|
|
7
|
-
} from "./chunks/chunk-
|
|
8
|
-
import "./chunks/chunk-4FQTTG5F.js";
|
|
9
|
-
import "./chunks/chunk-TEDQJPMI.js";
|
|
7
|
+
} from "./chunks/chunk-IW6K4VHZ.js";
|
|
10
8
|
import "./chunks/chunk-LOEA5IHZ.js";
|
|
9
|
+
import "./chunks/chunk-AYOSNXLQ.js";
|
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10
|
+
import "./chunks/chunk-TEDQJPMI.js";
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11
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import "./chunks/chunk-L3O7AWLI.js";
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12
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import "./chunks/chunk-TZFWUT2C.js";
|
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|
+
import "./chunks/chunk-C44YRP5F.js";
|
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13
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import "./chunks/chunk-RVS2QCOX.js";
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15
|
import "./chunks/chunk-HNQPEMYE.js";
|
|
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|
-
import "./chunks/chunk-C44YRP5F.js";
|
|
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16
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import "./chunks/chunk-3JANT2SW.js";
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|
import "./chunks/chunk-SZNZ2T6D.js";
|
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-
import "./chunks/chunk-
|
|
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|
-
import "./chunks/chunk-ES2N6V56.js";
|
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|
-
import "./chunks/chunk-ST2IBUAN.js";
|
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18
|
+
import "./chunks/chunk-7GBL7SJY.js";
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19
|
import "./chunks/chunk-3ZZSX5HN.js";
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20
|
import "./chunks/chunk-AB35TJST.js";
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+
import "./chunks/chunk-ES2N6V56.js";
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+
import "./chunks/chunk-ST2IBUAN.js";
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+
import "./chunks/chunk-BPLIXMH7.js";
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24
|
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25
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26
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|
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|
|
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|
-
import "./chunks/chunk-BPLIXMH7.js";
|
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28
|
import "./chunks/chunk-FYQWPEEY.js";
|
|
29
29
|
export {
|
|
30
30
|
FORCE_LAYOUT_LABEL,
|
package/dist/pathColors.js
CHANGED
|
@@ -7,16 +7,17 @@ import {
|
|
|
7
7
|
pathCssColor,
|
|
8
8
|
pathGreyCssColor,
|
|
9
9
|
pathHueAt,
|
|
10
|
-
pathLegend
|
|
11
|
-
|
|
12
|
-
|
|
10
|
+
pathLegend,
|
|
11
|
+
walkLabelsOf
|
|
12
|
+
} from "./chunks/chunk-7GBL7SJY.js";
|
|
13
13
|
import "./chunks/chunk-3ZZSX5HN.js";
|
|
14
14
|
import "./chunks/chunk-AB35TJST.js";
|
|
15
|
+
import "./chunks/chunk-ST2IBUAN.js";
|
|
16
|
+
import "./chunks/chunk-BPLIXMH7.js";
|
|
15
17
|
import "./chunks/chunk-TAMCZHLW.js";
|
|
16
18
|
import "./chunks/chunk-N6FECAXP.js";
|
|
17
19
|
import "./chunks/chunk-2CVHXFK7.js";
|
|
18
20
|
import "./chunks/chunk-CPMHA4W5.js";
|
|
19
|
-
import "./chunks/chunk-BPLIXMH7.js";
|
|
20
21
|
import "./chunks/chunk-FYQWPEEY.js";
|
|
21
22
|
export {
|
|
22
23
|
MAX_PATH_COLORS,
|
|
@@ -27,5 +28,6 @@ export {
|
|
|
27
28
|
pathCssColor,
|
|
28
29
|
pathGreyCssColor,
|
|
29
30
|
pathHueAt,
|
|
30
|
-
pathLegend
|
|
31
|
+
pathLegend,
|
|
32
|
+
walkLabelsOf
|
|
31
33
|
};
|
package/dist/pipeline.js
CHANGED
|
@@ -1,15 +1,17 @@
|
|
|
1
1
|
import {
|
|
2
|
+
ENGINE_DEFAULTS,
|
|
2
3
|
FIT_PADDING,
|
|
3
4
|
clampZoom,
|
|
4
5
|
drawingBounds,
|
|
5
6
|
engineKey,
|
|
6
7
|
engineRequest,
|
|
8
|
+
engineSettingsOf,
|
|
7
9
|
fitTransform,
|
|
8
10
|
fittedTranslateY,
|
|
9
11
|
forceLayout,
|
|
10
12
|
layoutExtent,
|
|
11
13
|
loadGraph
|
|
12
|
-
} from "./chunks/chunk-
|
|
14
|
+
} from "./chunks/chunk-SGAMPIKO.js";
|
|
13
15
|
import "./chunks/chunk-PUG7LXDF.js";
|
|
14
16
|
import "./chunks/chunk-IGVV37VI.js";
|
|
15
17
|
import "./chunks/chunk-72N5DJHZ.js";
|
|
@@ -18,20 +20,22 @@ import "./chunks/chunk-CDLPYR5O.js";
|
|
|
18
20
|
import "./chunks/chunk-JVLURPFW.js";
|
|
19
21
|
import "./chunks/chunk-ES2N6V56.js";
|
|
20
22
|
import "./chunks/chunk-ST2IBUAN.js";
|
|
23
|
+
import "./chunks/chunk-BPLIXMH7.js";
|
|
21
24
|
import "./chunks/chunk-TAMCZHLW.js";
|
|
22
25
|
import "./chunks/chunk-UVBGRJQX.js";
|
|
23
26
|
import "./chunks/chunk-6JEWNXCQ.js";
|
|
24
27
|
import "./chunks/chunk-N6FECAXP.js";
|
|
25
28
|
import "./chunks/chunk-2CVHXFK7.js";
|
|
26
29
|
import "./chunks/chunk-CPMHA4W5.js";
|
|
27
|
-
import "./chunks/chunk-BPLIXMH7.js";
|
|
28
30
|
import "./chunks/chunk-FYQWPEEY.js";
|
|
29
31
|
export {
|
|
32
|
+
ENGINE_DEFAULTS,
|
|
30
33
|
FIT_PADDING,
|
|
31
34
|
clampZoom,
|
|
32
35
|
drawingBounds,
|
|
33
36
|
engineKey,
|
|
34
37
|
engineRequest,
|
|
38
|
+
engineSettingsOf,
|
|
35
39
|
fitTransform,
|
|
36
40
|
fittedTranslateY,
|
|
37
41
|
forceLayout,
|
package/dist/referenceRampCss.js
CHANGED
|
@@ -4,21 +4,21 @@ import {
|
|
|
4
4
|
rampHue,
|
|
5
5
|
rampHueCss,
|
|
6
6
|
rampStops
|
|
7
|
-
} from "./chunks/chunk-
|
|
8
|
-
import "./chunks/chunk-
|
|
7
|
+
} from "./chunks/chunk-Z3OHBOEA.js";
|
|
8
|
+
import "./chunks/chunk-W7R55CIZ.js";
|
|
9
9
|
import "./chunks/chunk-UMNCCYBN.js";
|
|
10
10
|
import "./chunks/chunk-PBENCR5L.js";
|
|
11
11
|
import "./chunks/chunk-WFB5TXRA.js";
|
|
12
|
-
import "./chunks/chunk-
|
|
13
|
-
import "./chunks/chunk-ES2N6V56.js";
|
|
14
|
-
import "./chunks/chunk-ST2IBUAN.js";
|
|
12
|
+
import "./chunks/chunk-7GBL7SJY.js";
|
|
15
13
|
import "./chunks/chunk-3ZZSX5HN.js";
|
|
16
14
|
import "./chunks/chunk-AB35TJST.js";
|
|
15
|
+
import "./chunks/chunk-ES2N6V56.js";
|
|
16
|
+
import "./chunks/chunk-ST2IBUAN.js";
|
|
17
|
+
import "./chunks/chunk-BPLIXMH7.js";
|
|
17
18
|
import "./chunks/chunk-TAMCZHLW.js";
|
|
18
19
|
import "./chunks/chunk-N6FECAXP.js";
|
|
19
20
|
import "./chunks/chunk-2CVHXFK7.js";
|
|
20
21
|
import "./chunks/chunk-CPMHA4W5.js";
|
|
21
|
-
import "./chunks/chunk-BPLIXMH7.js";
|
|
22
22
|
import "./chunks/chunk-FYQWPEEY.js";
|
|
23
23
|
export {
|
|
24
24
|
RAMP_GRADIENT_CSS,
|