@jbrowse/bandage-core 7.1.0 → 7.2.1

package/dist/chunks/{chunk-UGD6ZMOF.js → chunk-2T3SRIFH.js}

@@ -25,7 +25,6 @@ var GENE_INK = "#1c1c22";
 var BAR_PX = 12;
 var GAP_PX = 4;
 var LABELLED_ROW_PX = 12;
-var READOUT_ROW_PX = 14;
 var MIN_TILED_BAR_PX = 6;
 var MIN_TILE_PX = 3;
 function kb(bp) {
@@ -278,7 +277,7 @@ function rowPitch(count, room, minRowPx = 0) {
     rowPx,
     barPx: rowPx <= 3 ? rowPx : Math.max(3, Math.round(rowPx * 0.6)),
     labelled: rowPx >= LABELLED_ROW_PX,
-    readouts: rowPx >= READOUT_ROW_PX
+    readouts: rowPx >= LABELLED_ROW_PX
   };
 }
 function coalesceRuns(runs, pxPerBp) {

package/dist/chunks/chunk-6EJIU6IA.js

@@ -0,0 +1,42 @@
+import {
+  stressLayout
+} from "./chunk-UNOE2NDN.js";
+import {
+  loadBandage
+} from "./chunk-7XHHVYG7.js";
+
+// src/layoutEngines.ts
+var LAYOUT_ENGINES = [
+  {
+    value: "fmmm",
+    label: "Bandage (FMMM)",
+    description: "Bandage's force-directed layout: OGDF's fast multipole multilevel method, compiled to wasm."
+  },
+  {
+    value: "stress",
+    label: "Stress (experimental)",
+    description: "Stress layout by stochastic gradient descent in plain JS: distances along the graph become distances on the page, so the reference reads straight and a repeat loop reads as a ring."
+  }
+];
+var LAYOUT_ENGINE_VALUES = LAYOUT_ENGINES.map((e) => e.value);
+function isLayoutEngineKind(value) {
+  return LAYOUT_ENGINE_VALUES.includes(value);
+}
+var layoutEngine = async (request) => {
+  if (request.options.engine === "stress") {
+    const start2 = performance.now();
+    const result2 = stressLayout(request);
+    return { result: result2, duration: performance.now() - start2 };
+  }
+  const bandage = await loadBandage();
+  const start = performance.now();
+  const result = bandage.computeLayout(request.graph, request.options);
+  return { result, duration: performance.now() - start };
+};
+
+export {
+  LAYOUT_ENGINES,
+  LAYOUT_ENGINE_VALUES,
+  isLayoutEngineKind,
+  layoutEngine
+};

package/dist/chunks/{chunk-MAPRJ2H2.js → chunk-BZKEMAWC.js}

@@ -1,5 +1,5 @@
 // src/version.ts
-var version = "7.1.0";
+var version = "7.2.1";
 
 export {
   version

package/dist/chunks/{chunk-6UFS3EWI.js → chunk-EPWYRSHH.js}

@@ -14,7 +14,7 @@ import {
   routeNodes,
   takeRoutes,
   withDeletionRoutes
-} from "./chunk-YZ5CCEDH.js";
+} from "./chunk-JVLURPFW.js";
 import {
   anchorGraph
 } from "./chunk-ST2IBUAN.js";

package/dist/chunks/{chunk-YZ5CCEDH.js → chunk-JVLURPFW.js}

@@ -73,6 +73,7 @@ function takeRoutes(positions, routes) {
 }
 
 export {
+  ROUTE_ID,
   withDeletionRoutes,
   routeNodes,
   takeRoutes