@jbrowse/bandage-core 7.0.0 → 7.2.0

package/dist/cli/figure.js

@@ -5,13 +5,16 @@ import {
   genesFromText
 } from "../chunks/chunk-BXEPA4KS.js";
 import {
+  LAYOUT_ENGINE_VALUES,
+  isLayoutEngineKind,
   layoutEngine
-} from "../chunks/chunk-L53SXJZI.js";
-import "../chunks/chunk-O4TGF4WS.js";
+} from "../chunks/chunk-6EJIU6IA.js";
+import "../chunks/chunk-UNOE2NDN.js";
+import "../chunks/chunk-LYJ4US66.js";
 import {
   LAYOUT_MODES,
   layoutModeByValue
-} from "../chunks/chunk-WEMKWLDF.js";
+} from "../chunks/chunk-JKXE6CIP.js";
 import "../chunks/chunk-4FQTTG5F.js";
 import "../chunks/chunk-TEDQJPMI.js";
 import "../chunks/chunk-LOEA5IHZ.js";
@@ -23,32 +26,31 @@ import "../chunks/chunk-C44YRP5F.js";
 import "../chunks/chunk-7XHHVYG7.js";
 import {
   figureSvg
-} from "../chunks/chunk-7PWMTUAK.js";
+} from "../chunks/chunk-QMJ4J5PT.js";
+import "../chunks/chunk-CH3DLBUT.js";
+import "../chunks/chunk-4BYTEJGW.js";
 import "../chunks/chunk-47DYCZOK.js";
-import "../chunks/chunk-MZ7QQRUJ.js";
+import "../chunks/chunk-KREASK3Z.js";
 import {
   genesOnRow,
   placeRowGenes
-} from "../chunks/chunk-JFNPL4UT.js";
-import "../chunks/chunk-CH3DLBUT.js";
-import "../chunks/chunk-4BYTEJGW.js";
+} from "../chunks/chunk-UGD6ZMOF.js";
 import "../chunks/chunk-3S3YVOJ7.js";
 import "../chunks/chunk-BUBZ32IC.js";
-import "../chunks/chunk-EOSVRILX.js";
-import "../chunks/chunk-AWCMVPVP.js";
+import "../chunks/chunk-S73EYTZA.js";
+import "../chunks/chunk-Y7UR3MDE.js";
 import "../chunks/chunk-MH5IA57M.js";
 import "../chunks/chunk-TQ7VCGJR.js";
 import "../chunks/chunk-2LQ5BWT7.js";
 import {
   forceLayout,
   loadGraph
-} from "../chunks/chunk-6UFS3EWI.js";
+} from "../chunks/chunk-EPWYRSHH.js";
 import "../chunks/chunk-PUG7LXDF.js";
 import "../chunks/chunk-IGVV37VI.js";
 import "../chunks/chunk-72N5DJHZ.js";
 import "../chunks/chunk-QYBZZI5H.js";
 import "../chunks/chunk-CDLPYR5O.js";
-import "../chunks/chunk-YZ5CCEDH.js";
 import "../chunks/chunk-VECR253P.js";
 import "../chunks/chunk-VST5SR4C.js";
 import "../chunks/chunk-UMNCCYBN.js";
@@ -57,7 +59,8 @@ import "../chunks/chunk-GJMC3PGM.js";
 import "../chunks/chunk-FP4H7SFT.js";
 import "../chunks/chunk-MLSWIMZO.js";
 import "../chunks/chunk-WFB5TXRA.js";
-import "../chunks/chunk-EZPBJPK6.js";
+import "../chunks/chunk-JVLURPFW.js";
+import "../chunks/chunk-3JANT2SW.js";
 import {
   filterSamples,
   walkRows
@@ -202,8 +205,16 @@ function checkLayout(layout) {
     );
   }
 }
+function checkEngine(engine) {
+  if (engine !== void 0 && !isLayoutEngineKind(engine)) {
+    throw new Error(
+      `no "${engine}" layout engine: one of ${LAYOUT_ENGINE_VALUES.join(", ")}`
+    );
+  }
+}
 async function renderSpec(spec, base) {
   checkLayout(spec.layout);
+  checkEngine(spec.engine);
   const resolve = (location) => isUrl(location) ? location : path.resolve(base, location);
   let source;
   if (spec.gbz) {

package/dist/figure.js

@@ -1,25 +1,24 @@
 import {
   figureSvg
-} from "./chunks/chunk-7PWMTUAK.js";
-import "./chunks/chunk-47DYCZOK.js";
-import "./chunks/chunk-MZ7QQRUJ.js";
-import "./chunks/chunk-JFNPL4UT.js";
+} from "./chunks/chunk-QMJ4J5PT.js";
 import "./chunks/chunk-CH3DLBUT.js";
 import "./chunks/chunk-4BYTEJGW.js";
+import "./chunks/chunk-47DYCZOK.js";
+import "./chunks/chunk-KREASK3Z.js";
+import "./chunks/chunk-UGD6ZMOF.js";
 import "./chunks/chunk-3S3YVOJ7.js";
 import "./chunks/chunk-BUBZ32IC.js";
-import "./chunks/chunk-EOSVRILX.js";
-import "./chunks/chunk-AWCMVPVP.js";
+import "./chunks/chunk-S73EYTZA.js";
+import "./chunks/chunk-Y7UR3MDE.js";
 import "./chunks/chunk-MH5IA57M.js";
 import "./chunks/chunk-TQ7VCGJR.js";
 import "./chunks/chunk-2LQ5BWT7.js";
-import "./chunks/chunk-6UFS3EWI.js";
+import "./chunks/chunk-EPWYRSHH.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-72N5DJHZ.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-CDLPYR5O.js";
-import "./chunks/chunk-YZ5CCEDH.js";
 import "./chunks/chunk-VECR253P.js";
 import "./chunks/chunk-VST5SR4C.js";
 import "./chunks/chunk-UMNCCYBN.js";
@@ -28,7 +27,8 @@ import "./chunks/chunk-GJMC3PGM.js";
 import "./chunks/chunk-FP4H7SFT.js";
 import "./chunks/chunk-MLSWIMZO.js";
 import "./chunks/chunk-WFB5TXRA.js";
-import "./chunks/chunk-EZPBJPK6.js";
+import "./chunks/chunk-JVLURPFW.js";
+import "./chunks/chunk-3JANT2SW.js";
 import "./chunks/chunk-SZNZ2T6D.js";
 import "./chunks/chunk-E7FWQQHP.js";
 import "./chunks/chunk-ES2N6V56.js";

package/dist/index.js

@@ -62,18 +62,19 @@ import {
   stripBlockAt
 } from "./chunks/chunk-EXSXBIMH.js";
 import {
+  LAYOUT_ENGINES,
   layoutEngine
-} from "./chunks/chunk-L53SXJZI.js";
+} from "./chunks/chunk-6EJIU6IA.js";
 import {
-  LAYOUT_ENGINES,
   stressLayout
-} from "./chunks/chunk-O4TGF4WS.js";
+} from "./chunks/chunk-UNOE2NDN.js";
+import "./chunks/chunk-LYJ4US66.js";
 import {
   FORCE_LAYOUT_LABEL,
   LAYOUT_MODES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-WEMKWLDF.js";
+} from "./chunks/chunk-JKXE6CIP.js";
 import "./chunks/chunk-4FQTTG5F.js";
 import "./chunks/chunk-TEDQJPMI.js";
 import "./chunks/chunk-LOEA5IHZ.js";
@@ -87,12 +88,17 @@ import {
 } from "./chunks/chunk-7XHHVYG7.js";
 import {
   figureSvg
-} from "./chunks/chunk-7PWMTUAK.js";
+} from "./chunks/chunk-QMJ4J5PT.js";
+import {
+  Canvas2DRenderer
+} from "./chunks/chunk-CH3DLBUT.js";
+import {
+  getDpr
+} from "./chunks/chunk-4BYTEJGW.js";
 import {
   svgCanvas
 } from "./chunks/chunk-47DYCZOK.js";
 import {
-  LABELLED_ROW_PX,
   WALK_STRIP_CEILING_PX,
   segmentAt,
   stripGeneGaps,
@@ -101,21 +107,26 @@ import {
   walkMarksTree,
   walkStripFrame,
   walkStripLabelsTree
-} from "./chunks/chunk-MZ7QQRUJ.js";
+} from "./chunks/chunk-KREASK3Z.js";
 import {
   BAR_PX,
+  CALL_TICK,
   DISAGREES,
   GAP_PX,
   GENE_INK,
+  LABELLED_ROW_PX,
   OFF_REFERENCE,
   ON_REFERENCE,
   OUTSIDE_CUT,
+  UNBACKED_TICK,
   alongRow,
+  callTickInk,
   coalesceRuns,
   genesOnRow,
   placeRowGenes,
   readoutPlacement,
   rowGeneBoxes,
+  rowPitch,
   rowSpan,
   runPaint,
   unitTicks,
@@ -123,13 +134,7 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "./chunks/chunk-JFNPL4UT.js";
-import {
-  Canvas2DRenderer
-} from "./chunks/chunk-CH3DLBUT.js";
-import {
-  getDpr
-} from "./chunks/chunk-4BYTEJGW.js";
+} from "./chunks/chunk-UGD6ZMOF.js";
 import {
   EXON_COLOR,
   exonOutlineTree,
@@ -140,7 +145,7 @@ import {
 } from "./chunks/chunk-BUBZ32IC.js";
 import {
   version
-} from "./chunks/chunk-EOSVRILX.js";
+} from "./chunks/chunk-S73EYTZA.js";
 import {
   axisScaleOf,
   contains,
@@ -148,7 +153,7 @@ import {
   screenToLayout,
   viewportOf,
   zoomAbout
-} from "./chunks/chunk-AWCMVPVP.js";
+} from "./chunks/chunk-Y7UR3MDE.js";
 import {
   facetLifts,
   walkHighlight,
@@ -177,13 +182,12 @@ import {
   forceLayout,
   layoutExtent,
   loadGraph
-} from "./chunks/chunk-6UFS3EWI.js";
+} from "./chunks/chunk-EPWYRSHH.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-72N5DJHZ.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-CDLPYR5O.js";
-import "./chunks/chunk-YZ5CCEDH.js";
 import {
   RAMP_GRADIENT_CSS,
   rampHue,
@@ -215,9 +219,10 @@ import {
 } from "./chunks/chunk-FP4H7SFT.js";
 import "./chunks/chunk-MLSWIMZO.js";
 import "./chunks/chunk-WFB5TXRA.js";
+import "./chunks/chunk-JVLURPFW.js";
 import {
   walkRowsExtent
-} from "./chunks/chunk-EZPBJPK6.js";
+} from "./chunks/chunk-3JANT2SW.js";
 import {
   filterSamples,
   walkRows
@@ -322,6 +327,7 @@ export {
   REFERENCE_STRIP_ZONE_PX,
   ROW_HEIGHT_PX,
   BAR_PX as WALK_BAR_PX,
+  CALL_TICK as WALK_CALL_TICK,
   DISAGREES as WALK_DISAGREES,
   WALK_FIELDS,
   GAP_PX as WALK_GAP_PX,
@@ -331,6 +337,7 @@ export {
   OUTSIDE_CUT as WALK_OUTSIDE_CUT,
   WALK_SCHEMES,
   WALK_STRIP_CEILING_PX,
+  UNBACKED_TICK as WALK_UNBACKED_TICK,
   WELL_KNOWN_SAMPLES,
   alongRow,
   assemblyWalk,
@@ -341,6 +348,7 @@ export {
   bubbleSubgraph,
   bubblesFromGraph,
   buildGeometry,
+  callTickInk,
   clampZoom,
   classifyBubble,
   coalesceRuns,
@@ -423,6 +431,7 @@ export {
   resolveEncoding,
   resolveReferenceSample,
   rowGeneBoxes,
+  rowPitch,
   rowSpan,
   rulerBoxes,
   runPaint,

package/dist/layout/deletionRoutes.js

@@ -1,9 +1,11 @@
 import {
+  ROUTE_ID,
   routeNodes,
   takeRoutes,
   withDeletionRoutes
-} from "../chunks/chunk-YZ5CCEDH.js";
+} from "../chunks/chunk-JVLURPFW.js";
 export {
+  ROUTE_ID,
   routeNodes,
   takeRoutes,
   withDeletionRoutes

package/dist/layout/stressEngine.js

@@ -1,11 +1,11 @@
 import {
-  LAYOUT_ENGINES,
-  LAYOUT_ENGINE_VALUES,
+  chains,
   stressLayout
-} from "../chunks/chunk-O4TGF4WS.js";
+} from "../chunks/chunk-UNOE2NDN.js";
+import "../chunks/chunk-LYJ4US66.js";
+import "../chunks/chunk-JVLURPFW.js";
 import "../chunks/chunk-FYQWPEEY.js";
 export {
-  LAYOUT_ENGINES,
-  LAYOUT_ENGINE_VALUES,
+  chains,
   stressLayout
 };

package/dist/layout/stressPlacement.js

@@ -0,0 +1,7 @@
+import {
+  stressPlacement
+} from "../chunks/chunk-LYJ4US66.js";
+import "../chunks/chunk-JVLURPFW.js";
+export {
+  stressPlacement
+};

package/dist/layout/walkRowDraw.js

@@ -1,19 +1,24 @@
 import {
   BAR_PX,
+  CALL_TICK,
   DISAGREES,
   GAP_PX,
   GENE_INK,
+  LABELLED_ROW_PX,
   OFF_REFERENCE,
   ON_REFERENCE,
   OUTSIDE_CUT,
+  UNBACKED_TICK,
   alongRow,
   boxesGenes,
+  callTickInk,
   coalesceRuns,
   genesOnRow,
   kb,
   placeRowGenes,
   readoutPlacement,
   rowGeneBoxes,
+  rowPitch,
   rowSpan,
   runPaint,
   unitTicks,
@@ -21,7 +26,7 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "../chunks/chunk-JFNPL4UT.js";
+} from "../chunks/chunk-UGD6ZMOF.js";
 import "../chunks/chunk-VECR253P.js";
 import "../chunks/chunk-VST5SR4C.js";
 import "../chunks/chunk-UMNCCYBN.js";
@@ -41,20 +46,25 @@ import "../chunks/chunk-BPLIXMH7.js";
 import "../chunks/chunk-FYQWPEEY.js";
 export {
   BAR_PX,
+  CALL_TICK,
   DISAGREES,
   GAP_PX,
   GENE_INK,
+  LABELLED_ROW_PX,
   OFF_REFERENCE,
   ON_REFERENCE,
   OUTSIDE_CUT,
+  UNBACKED_TICK,
   alongRow,
   boxesGenes,
+  callTickInk,
   coalesceRuns,
   genesOnRow,
   kb,
   placeRowGenes,
   readoutPlacement,
   rowGeneBoxes,
+  rowPitch,
   rowSpan,
   runPaint,
   unitTicks,

package/dist/layout/walkRowLayout.js

@@ -1,7 +1,7 @@
 import {
   walkRowLayout,
   walkRowsExtent
-} from "../chunks/chunk-EZPBJPK6.js";
+} from "../chunks/chunk-3JANT2SW.js";
 import "../chunks/chunk-SZNZ2T6D.js";
 import "../chunks/chunk-ST2IBUAN.js";
 import "../chunks/chunk-CPMHA4W5.js";

package/dist/layout/walkStrip.js

@@ -1,5 +1,4 @@
 import {
-  LABELLED_ROW_PX,
   WALK_STRIP_CEILING_PX,
   segmentAt,
   stripGeneGaps,
@@ -8,8 +7,10 @@ import {
   walkMarksTree,
   walkStripFrame,
   walkStripLabelsTree
-} from "../chunks/chunk-MZ7QQRUJ.js";
-import "../chunks/chunk-JFNPL4UT.js";
+} from "../chunks/chunk-KREASK3Z.js";
+import {
+  LABELLED_ROW_PX
+} from "../chunks/chunk-UGD6ZMOF.js";
 import "../chunks/chunk-VECR253P.js";
 import "../chunks/chunk-VST5SR4C.js";
 import "../chunks/chunk-UMNCCYBN.js";

package/dist/layoutEngines.js

@@ -1,9 +1,17 @@
 import {
+  LAYOUT_ENGINES,
+  LAYOUT_ENGINE_VALUES,
+  isLayoutEngineKind,
   layoutEngine
-} from "./chunks/chunk-L53SXJZI.js";
-import "./chunks/chunk-O4TGF4WS.js";
+} from "./chunks/chunk-6EJIU6IA.js";
+import "./chunks/chunk-UNOE2NDN.js";
+import "./chunks/chunk-LYJ4US66.js";
 import "./chunks/chunk-7XHHVYG7.js";
+import "./chunks/chunk-JVLURPFW.js";
 import "./chunks/chunk-FYQWPEEY.js";
 export {
+  LAYOUT_ENGINES,
+  LAYOUT_ENGINE_VALUES,
+  isLayoutEngineKind,
   layoutEngine
 };

package/dist/layoutModes.js

@@ -4,7 +4,7 @@ import {
   LAYOUT_MODE_VALUES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-WEMKWLDF.js";
+} from "./chunks/chunk-JKXE6CIP.js";
 import "./chunks/chunk-4FQTTG5F.js";
 import "./chunks/chunk-TEDQJPMI.js";
 import "./chunks/chunk-LOEA5IHZ.js";
@@ -13,7 +13,7 @@ import "./chunks/chunk-TZFWUT2C.js";
 import "./chunks/chunk-RVS2QCOX.js";
 import "./chunks/chunk-HNQPEMYE.js";
 import "./chunks/chunk-C44YRP5F.js";
-import "./chunks/chunk-EZPBJPK6.js";
+import "./chunks/chunk-3JANT2SW.js";
 import "./chunks/chunk-SZNZ2T6D.js";
 import "./chunks/chunk-E7FWQQHP.js";
 import "./chunks/chunk-ES2N6V56.js";

package/dist/pipeline.js

@@ -9,13 +9,13 @@ import {
   forceLayout,
   layoutExtent,
   loadGraph
-} from "./chunks/chunk-6UFS3EWI.js";
+} from "./chunks/chunk-EPWYRSHH.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-72N5DJHZ.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-CDLPYR5O.js";
-import "./chunks/chunk-YZ5CCEDH.js";
+import "./chunks/chunk-JVLURPFW.js";
 import "./chunks/chunk-ES2N6V56.js";
 import "./chunks/chunk-ST2IBUAN.js";
 import "./chunks/chunk-TAMCZHLW.js";

package/dist/types/cli/figure.d.ts

@@ -1,7 +1,7 @@
 import type { BubbleSpread } from '../bubbleSpreads.js';
 import type { FigureOptions } from '../figure.js';
 import type { GbzSource } from '../gbzCut.js';
-import type { LayoutEngineKind } from '../layout/stressEngine.js';
+import type { LayoutEngineKind } from '../layoutEngines.js';
 import type { LayoutModeValue } from '../layoutModes.js';
 import type { WalkLayer } from '../walkEncoding.js';
 export interface FigureSpec extends Omit<FigureOptions, 'walks' | 'region' | 'genes' | 'spec' | 'walkStrip'> {

package/dist/types/figure.d.ts

@@ -1,7 +1,7 @@
 import type { ColorScheme } from './colorSchemes.js';
 import type { FacetInput } from './facetGrid.js';
 import type { GeneModel } from './genes/genePins.js';
-import type { GeneGaps, RowGene, WalkRowsWithCalls } from './layout/walkRowDraw.js';
+import type { GeneGaps, RowGene, RowPitch, WalkRowsWithCalls } from './layout/walkRowDraw.js';
 import type { WalkRows } from './layout/walkRows.js';
 import type { NodeWidth } from './nodeWidths.js';
 import type { Graph, LayoutResult } from './types.js';
@@ -30,6 +30,7 @@ export interface FigureOptions {
     genes?: GeneModel[];
     spec?: unknown;
     walkRows?: WalkRowsWithCalls;
+    walkRowPitch?: RowPitch;
     rowGenes?: Map<string, RowGene[]>;
     rowGeneGaps?: GeneGaps;
     walkStrip?: {

package/dist/types/index.d.ts

@@ -8,9 +8,9 @@ export { NODE_WIDTHS, maxNodeWidthPx, meanDepth, nodeInk, nodeWidthPx, } from '.
 export type { NodeWidth } from './nodeWidths.js';
 export { BUBBLE_SPREADS } from './bubbleSpreads.js';
 export type { BubbleSpread } from './bubbleSpreads.js';
-export { LAYOUT_ENGINES, stressLayout } from './layout/stressEngine.js';
-export type { LayoutEngineKind } from './layout/stressEngine.js';
-export { layoutEngine } from './layoutEngines.js';
+export { stressLayout } from './layout/stressEngine.js';
+export { LAYOUT_ENGINES, layoutEngine } from './layoutEngines.js';
+export type { LayoutEngineKind } from './layoutEngines.js';
 export { REFERENCE_RAMP_MAX_HUE, buildGeometry, computeReferenceRamp, } from './renderer/GeometryBuilder.js';
 export { Canvas2DRenderer } from './renderer/Canvas2DRenderer.js';
 export { getDpr } from './renderer/canvas.js';
@@ -59,8 +59,8 @@ export { bubbleSubgraph } from './bubbles/popBubble.js';
 export type { MinigraphBubble } from './bubbles/bubbleLine.js';
 export { filterSamples, walkRows } from './layout/walkRows.js';
 export type { WalkAxis, WalkRow, WalkRows, WalkRun } from './layout/walkRows.js';
-export { BAR_PX as WALK_BAR_PX, DISAGREES as WALK_DISAGREES, GAP_PX as WALK_GAP_PX, GENE_INK as WALK_GENE_INK, OFF_REFERENCE as WALK_OFF_REFERENCE, ON_REFERENCE as WALK_ON_REFERENCE, OUTSIDE_CUT as WALK_OUTSIDE_CUT, alongRow, coalesceRuns, genesOnRow, placeRowGenes, readoutPlacement, rowGeneBoxes, rowSpan, runPaint, unitTicks, walkRowReadout, walkRowsKey, walkRowsKeyTree, walkRowsTree, } from './layout/walkRowDraw.js';
-export type { GeneBox, GeneGaps, KeyEntry, KeySwatch, ReadoutCall, RowGene, WalkRowsFrame, WalkRowsWithCalls, } from './layout/walkRowDraw.js';
+export { BAR_PX as WALK_BAR_PX, CALL_TICK as WALK_CALL_TICK, DISAGREES as WALK_DISAGREES, GAP_PX as WALK_GAP_PX, GENE_INK as WALK_GENE_INK, OFF_REFERENCE as WALK_OFF_REFERENCE, ON_REFERENCE as WALK_ON_REFERENCE, OUTSIDE_CUT as WALK_OUTSIDE_CUT, UNBACKED_TICK as WALK_UNBACKED_TICK, alongRow, callTickInk, coalesceRuns, genesOnRow, placeRowGenes, readoutPlacement, rowGeneBoxes, rowPitch, rowSpan, runPaint, unitTicks, walkRowReadout, walkRowsKey, walkRowsKeyTree, walkRowsTree, } from './layout/walkRowDraw.js';
+export type { GeneBox, GeneGaps, KeyEntry, KeySwatch, ReadoutCall, RowGene, RowPitch, WalkRowsFrame, WalkRowsWithCalls, } from './layout/walkRowDraw.js';
 export { LABELLED_ROW_PX, WALK_STRIP_CEILING_PX, segmentAt, stripGeneGaps, stripMarks, stripRowAt, walkMarksTree, walkStripFrame, walkStripLabelsTree, } from './layout/walkStrip.js';
 export type { StripFrame, StripMark } from './layout/walkStrip.js';
 export { el, serializeEl } from './el.js';

package/dist/types/layout/deletionRoutes.d.ts

@@ -1,6 +1,7 @@
 import type { BandageScaleOpts } from './drawnScale.js';
 import type { DeletionEdge } from '../deletionEdges.js';
 import type { Graph, GraphEdge, GraphNode, NodeSegment } from '../types.js';
+export declare const ROUTE_ID = "\0deletion:";
 export type DeletionRoutes = Record<number, NodeSegment[]>;
 export declare function withDeletionRoutes(graph: Graph, deletions: DeletionEdge[], dropped?: Set<number>): {
     graph: {

package/dist/types/layout/stressEngine.d.ts

@@ -1,16 +1,24 @@
 import type { EngineRequest } from '../pipeline.js';
 import type { LayoutResult } from '../types.js';
-export declare const LAYOUT_ENGINES: readonly [{
-    readonly value: "fmmm";
-    readonly label: "Bandage (FMMM)";
-    readonly description: "Bandage's force-directed layout: OGDF's fast multipole multilevel method, compiled to wasm.";
-}, {
-    readonly value: "stress";
-    readonly label: "Stress (experimental)";
-    readonly description: "Stress layout by stochastic gradient descent in plain JS: distances along the graph become distances on the page, so the reference reads straight and a repeat loop reads as a ring.";
-}];
-export type LayoutEngineKind = (typeof LAYOUT_ENGINES)[number]['value'];
-export declare const LAYOUT_ENGINE_VALUES: ("fmmm" | "stress")[];
+export type Side = 0 | 1;
+export interface Chains {
+    ids: string[];
+    first: Int32Array;
+    count: Int32Array;
+    per: Float64Array;
+    links: [number, Side][][][];
+    chainOf: Int32Array;
+    indexOf: Int32Array;
+    seedX: Float64Array;
+    seedY: Float64Array;
+    backbone: Uint8Array;
+    off: Int32Array;
+    nb: Int32Array;
+    wt: Float64Array;
+    n: number;
+    link: number;
+}
+export declare function chains(request: EngineRequest): Chains;
 export interface StressOptions {
     quality?: number;
     seed?: number;

package/dist/types/layout/stressPlacement.d.ts

@@ -0,0 +1,5 @@
+import type { Chains } from './stressEngine.js';
+export declare function stressPlacement(c: Chains): {
+    X: Float64Array<ArrayBuffer>;
+    Y: Float64Array<ArrayBuffer>;
+};

package/dist/types/layout/walkRowDraw.d.ts

@@ -7,6 +7,7 @@ export declare const OUTSIDE_CUT = "#bdbdbd";
 export declare const GENE_INK = "#1c1c22";
 export declare const BAR_PX = 12;
 export declare const GAP_PX = 4;
+export declare const LABELLED_ROW_PX = 12;
 export declare function kb(bp: number): string;
 export interface ReadoutCall {
     bp: number;
@@ -109,11 +110,21 @@ export type WalkRowsWithCalls = Omit<WalkRows, 'reference' | 'rows'> & {
         call?: ReadoutCall;
     })[];
 };
+export declare const CALL_TICK = "#111";
+export declare const UNBACKED_TICK = "#9e9e9e";
 export declare const DISAGREES = "#c62828";
+export declare function callTickInk(call: ReadoutCall): "#111" | "#9e9e9e" | "#c62828";
 export declare function walkRowsKeyTree(entries: KeyEntry[], x: number, y: number, idPrefix?: string): {
     width: number;
     tree: El;
 };
+export interface RowPitch {
+    rowPx: number;
+    barPx: number;
+    labelled: boolean;
+    readouts: boolean;
+}
+export declare function rowPitch(count: number, room: number, minRowPx?: number): RowPitch;
 export interface WalkRowsFrame {
     scaleX: number;
     scaleY: number;

package/dist/types/layout/walkRowLayout.d.ts

@@ -1,6 +1,7 @@
+import type { RowPitch } from './walkRowDraw.js';
 import type { WalkRows } from './walkRows.js';
 import type { Graph, LayoutResult } from '../types.js';
-export declare function walkRowsExtent(walks: WalkRows): {
+export declare function walkRowsExtent(walks: WalkRows, pitch?: Pick<RowPitch, 'rowPx' | 'readouts'>): {
     maxX: number;
     maxY: number;
 };

package/dist/types/layout/walkStrip.d.ts

@@ -1,8 +1,8 @@
 import type { GeneGaps, RowGene, WalkRowsFrame } from './walkRowDraw.js';
 import type { WalkRow, WalkRows } from './walkRows.js';
 import type { Graph, GraphNode } from '../types.js';
+export { LABELLED_ROW_PX } from './walkRowDraw.js';
 export declare const WALK_STRIP_CEILING_PX = 260;
-export declare const LABELLED_ROW_PX = 12;
 export interface StripMark {
     row: string;
     start: number;

package/dist/types/layoutEngines.d.ts

@@ -1,2 +1,14 @@
 import type { LayoutEngine } from './pipeline.js';
+export declare const LAYOUT_ENGINES: readonly [{
+    readonly value: "fmmm";
+    readonly label: "Bandage (FMMM)";
+    readonly description: "Bandage's force-directed layout: OGDF's fast multipole multilevel method, compiled to wasm.";
+}, {
+    readonly value: "stress";
+    readonly label: "Stress (experimental)";
+    readonly description: "Stress layout by stochastic gradient descent in plain JS: distances along the graph become distances on the page, so the reference reads straight and a repeat loop reads as a ring.";
+}];
+export type LayoutEngineKind = (typeof LAYOUT_ENGINES)[number]['value'];
+export declare const LAYOUT_ENGINE_VALUES: ("fmmm" | "stress")[];
+export declare function isLayoutEngineKind(value: unknown): value is LayoutEngineKind;
 export declare const layoutEngine: LayoutEngine;

package/dist/types/pipeline.d.ts

@@ -1,7 +1,7 @@
 import type { BubbleSpread } from './bubbleSpreads.js';
 import type { LayoutScaling } from './layout/drawnScale.js';
 import type { LayoutNode } from './layout/referenceSeeds.js';
-import type { LayoutEngineKind } from './layout/stressEngine.js';
+import type { LayoutEngineKind } from './layoutEngines.js';
 import type { Graph, LayoutResult, NodeSegment } from './types.js';
 export interface Bounds {
     minX: number;

package/dist/types/version.d.ts

@@ -1 +1 @@
-export declare const version = "7.0.0";
+export declare const version = "7.2.0";