@jbrowse/bandage-core 7.0.0 → 7.1.0

package/dist/chunks/{chunk-7PWMTUAK.js → chunk-2WA4EY25.js}

@@ -5,12 +5,12 @@ import {
   stripGeneGaps,
   walkStripFrame,
   walkStripLabelsTree
-} from "./chunk-MZ7QQRUJ.js";
+} from "./chunk-KREASK3Z.js";
 import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "./chunk-JFNPL4UT.js";
+} from "./chunk-UGD6ZMOF.js";
 import {
   Canvas2DRenderer
 } from "./chunk-CH3DLBUT.js";
@@ -24,7 +24,7 @@ import {
 } from "./chunk-BUBZ32IC.js";
 import {
   version
-} from "./chunk-EOSVRILX.js";
+} from "./chunk-MAPRJ2H2.js";
 import {
   axisScaleOf
 } from "./chunk-AWCMVPVP.js";
@@ -59,7 +59,7 @@ import {
 } from "./chunk-FP4H7SFT.js";
 import {
   walkRowsExtent
-} from "./chunk-EZPBJPK6.js";
+} from "./chunk-3JANT2SW.js";
 import {
   pathLegend
 } from "./chunk-E7FWQQHP.js";
@@ -154,7 +154,7 @@ function figureSvg(graph, layout, o = {}) {
   const rows = o.walkRows;
   const bounds = drawingBounds(layout, {
     region: o.fitToDrawing ? void 0 : region,
-    extent: rows && layout.extent ? walkRowsExtent(rows) : void 0
+    extent: rows && layout.extent ? walkRowsExtent(rows, o.walkRowPitch) : void 0
   });
   const pixelRows = layout.pixelRows ?? false;
   const nodeById = new Map(graph.nodes.map((node) => [node.id, node]));
@@ -226,7 +226,7 @@ function figureSvg(graph, layout, o = {}) {
         serializeEl(
           walkRowsTree(
             rows,
-            { ...t, width: w, height: h },
+            { ...t, width: w, height: h, ...o.walkRowPitch },
             {
               ramp: rampInterval,
               rowGenes: o.rowGenes
@@ -235,9 +235,10 @@ function figureSvg(graph, layout, o = {}) {
         )
       );
     }
-    const rowLabels = rows ? [rows.reference, ...rows.rows].map((r, i) => ({
+    const pitch = o.walkRowPitch;
+    const rowLabels = rows ? pitch && !pitch.labelled ? [] : [rows.reference, ...rows.rows].map((r, i) => ({
       label: r.label,
-      y: i * ROW_HEIGHT_PX
+      y: i * (pitch?.rowPx ?? ROW_HEIGHT_PX)
     })) : layout.rowLabels ?? [];
     for (const { label, y } of rowLabels) {
       const sy = y * t.scaleY + t.translateY;

package/dist/chunks/{chunk-EZPBJPK6.js → chunk-3JANT2SW.js}

@@ -12,14 +12,17 @@ import {
 
 // src/layout/walkRowLayout.ts
 var READOUT_ROOM = 1.3;
-function walkRowsExtent(walks) {
+function walkRowsExtent(walks, pitch = {
+  rowPx: ROW_HEIGHT_PX,
+  readouts: true
+}) {
   let longest = walks.reference.bp;
   for (const row of walks.rows) {
     longest = Math.max(longest, row.bp);
   }
   return {
-    maxX: walks.origin + longest * READOUT_ROOM,
-    maxY: walks.rows.length * ROW_HEIGHT_PX
+    maxX: walks.origin + longest * (pitch.readouts ? READOUT_ROOM : 1),
+    maxY: walks.rows.length * pitch.rowPx
   };
 }
 function walkRowLayout(graph, region) {

package/dist/chunks/{chunk-WEMKWLDF.js → chunk-JKXE6CIP.js}

@@ -14,7 +14,7 @@ import {
 } from "./chunk-HNQPEMYE.js";
 import {
   walkRowLayout
-} from "./chunk-EZPBJPK6.js";
+} from "./chunk-3JANT2SW.js";
 import {
   isBackbone,
   isOffReference

package/dist/chunks/{chunk-MZ7QQRUJ.js → chunk-KREASK3Z.js}

@@ -1,16 +1,14 @@
 import {
   alongRow,
-  boxesGenes
-} from "./chunk-JFNPL4UT.js";
+  boxesGenes,
+  rowPitch
+} from "./chunk-UGD6ZMOF.js";
 import {
   pathOrigin
 } from "./chunk-ST2IBUAN.js";
 import {
   LABEL_CHAR_PX
 } from "./chunk-AB35TJST.js";
-import {
-  ROW_HEIGHT_PX
-} from "./chunk-CPMHA4W5.js";
 import {
   el
 } from "./chunk-NNODIW4U.js";
@@ -20,7 +18,6 @@ var PAD_PX = 6;
 var WALK_STRIP_CEILING_PX = 260;
 var LABEL_FONT_PX = 11;
 var MIN_ROW_PX = 3;
-var LABELLED_ROW_PX = 12;
 var READOUT_ROOM = 1.3;
 var MARK_INK = "#111";
 var TICK_PX = 3;
@@ -113,13 +110,11 @@ function walkStripFrame(bars, o) {
   const maxHeight = o.maxHeight ?? WALK_STRIP_CEILING_PX;
   const labelPx = o.labelPx ?? Math.max(...[bars.reference, ...bars.rows].map((r) => r.label.length)) * LABEL_CHAR_PX + 16;
   const count = bars.rows.length + 1;
-  const rowPx = Math.max(
-    MIN_ROW_PX,
-    Math.min(ROW_HEIGHT_PX, Math.floor((maxHeight - 2 * PAD_PX) / count))
+  const { rowPx, barPx, labelled, readouts } = rowPitch(
+    count,
+    maxHeight - 2 * PAD_PX,
+    MIN_ROW_PX
   );
-  const labelled = rowPx >= LABELLED_ROW_PX;
-  const readouts = rowPx >= 14;
-  const barPx = Math.max(2, Math.round(rowPx * 0.6));
   const longest = Math.max(bars.reference.bp, ...bars.rows.map((r) => r.bp), 1);
   const left = labelled ? labelPx : PAD_PX;
   const usable = Math.max(1, o.width - left - PAD_PX);
@@ -194,7 +189,6 @@ function stripGeneGaps(frame, rowGenes, gaps) {
 
 export {
   WALK_STRIP_CEILING_PX,
-  LABELLED_ROW_PX,
   stripMarks,
   segmentAt,
   walkStripFrame,

package/dist/chunks/{chunk-EOSVRILX.js → chunk-MAPRJ2H2.js}

@@ -1,5 +1,5 @@
 // src/version.ts
-var version = "7.0.0";
+var version = "7.1.0";
 
 export {
   version

package/dist/chunks/{chunk-JFNPL4UT.js → chunk-UGD6ZMOF.js}

@@ -24,6 +24,9 @@ var OUTSIDE_CUT = "#bdbdbd";
 var GENE_INK = "#1c1c22";
 var BAR_PX = 12;
 var GAP_PX = 4;
+var LABELLED_ROW_PX = 12;
+var READOUT_ROW_PX = 14;
+var MIN_TILED_BAR_PX = 6;
 var MIN_TILE_PX = 3;
 function kb(bp) {
   return `${(bp / 1e3).toFixed(bp < 1e4 ? 1 : 0)} kb`;
@@ -209,6 +212,9 @@ function walkRowsKey(bars, o = {}) {
 var CALL_TICK = "#111";
 var UNBACKED_TICK = "#9e9e9e";
 var DISAGREES = "#c62828";
+function callTickInk(call) {
+  return call.agrees === false ? DISAGREES : call.spanningReads === 0 ? UNBACKED_TICK : CALL_TICK;
+}
 function walkRowsKeyTree(entries, x, y, idPrefix = "walk-key") {
   let at = 0;
   const parts = entries.flatMap((e, i) => {
@@ -262,6 +268,19 @@ function walkRowsKeyTree(entries, x, y, idPrefix = "walk-key") {
     )
   };
 }
+function rowPitch(count, room, minRowPx = 0) {
+  const fit = room / Math.max(1, count);
+  const rowPx = Math.max(
+    minRowPx,
+    Math.min(ROW_HEIGHT_PX, fit >= 1 ? Math.floor(fit) : fit)
+  );
+  return {
+    rowPx,
+    barPx: rowPx <= 3 ? rowPx : Math.max(3, Math.round(rowPx * 0.6)),
+    labelled: rowPx >= LABELLED_ROW_PX,
+    readouts: rowPx >= READOUT_ROW_PX
+  };
+}
 function coalesceRuns(runs, pxPerBp) {
   const minBp = 1 / pxPerBp;
   const out = [];
@@ -358,6 +377,7 @@ function walkRowsTree(bars, frame, o = {}) {
   const X = (bp) => bp * frame.scaleX + frame.translateX;
   const rowPx = frame.rowPx ?? ROW_HEIGHT_PX;
   const barPx = frame.barPx ?? BAR_PX;
+  const overhang = Math.min(3, Math.max(0, (rowPx - barPx) / 2));
   const Y = (row) => row * rowPx * frame.scaleY + frame.translateY;
   const { origin, unit, reference, rows } = bars;
   const along = (offset) => X(origin + offset);
@@ -392,7 +412,7 @@ function walkRowsTree(bars, frame, o = {}) {
         rect
       ] : [rect];
     });
-    const ticks = unit ? unitTicks(row.bp, unit, frame.scaleX).map(
+    const ticks = unit && barPx >= MIN_TILED_BAR_PX ? unitTicks(row.bp, unit, frame.scaleX).map(
       (k) => el("line", {
         x1: along(k),
         x2: along(k),
@@ -425,10 +445,10 @@ function walkRowsTree(bars, frame, o = {}) {
       call && el("rect", {
         "data-testid": "graph-walk-call",
         x: along(call.bp) - 1,
-        y: y - barPx / 2 - 3,
+        y: y - barPx / 2 - overhang,
         width: 2,
-        height: barPx + 6,
-        fill: call.spanningReads === 0 ? UNBACKED_TICK : CALL_TICK
+        height: barPx + 2 * overhang,
+        fill: callTickInk(call)
       }),
       readouts && el(
         "text",
@@ -457,6 +477,7 @@ export {
   GENE_INK,
   BAR_PX,
   GAP_PX,
+  LABELLED_ROW_PX,
   kb,
   walkRowReadout,
   readoutPlacement,
@@ -469,8 +490,12 @@ export {
   boxesGenes,
   rowGeneBoxes,
   walkRowsKey,
+  CALL_TICK,
+  UNBACKED_TICK,
   DISAGREES,
+  callTickInk,
   walkRowsKeyTree,
+  rowPitch,
   coalesceRuns,
   walkRowsTree
 };

package/dist/cli/figure.js

@@ -11,7 +11,7 @@ import "../chunks/chunk-O4TGF4WS.js";
 import {
   LAYOUT_MODES,
   layoutModeByValue
-} from "../chunks/chunk-WEMKWLDF.js";
+} from "../chunks/chunk-JKXE6CIP.js";
 import "../chunks/chunk-4FQTTG5F.js";
 import "../chunks/chunk-TEDQJPMI.js";
 import "../chunks/chunk-LOEA5IHZ.js";
@@ -23,18 +23,18 @@ import "../chunks/chunk-C44YRP5F.js";
 import "../chunks/chunk-7XHHVYG7.js";
 import {
   figureSvg
-} from "../chunks/chunk-7PWMTUAK.js";
+} from "../chunks/chunk-2WA4EY25.js";
 import "../chunks/chunk-47DYCZOK.js";
-import "../chunks/chunk-MZ7QQRUJ.js";
+import "../chunks/chunk-KREASK3Z.js";
 import {
   genesOnRow,
   placeRowGenes
-} from "../chunks/chunk-JFNPL4UT.js";
+} from "../chunks/chunk-UGD6ZMOF.js";
 import "../chunks/chunk-CH3DLBUT.js";
 import "../chunks/chunk-4BYTEJGW.js";
 import "../chunks/chunk-3S3YVOJ7.js";
 import "../chunks/chunk-BUBZ32IC.js";
-import "../chunks/chunk-EOSVRILX.js";
+import "../chunks/chunk-MAPRJ2H2.js";
 import "../chunks/chunk-AWCMVPVP.js";
 import "../chunks/chunk-MH5IA57M.js";
 import "../chunks/chunk-TQ7VCGJR.js";
@@ -57,7 +57,7 @@ import "../chunks/chunk-GJMC3PGM.js";
 import "../chunks/chunk-FP4H7SFT.js";
 import "../chunks/chunk-MLSWIMZO.js";
 import "../chunks/chunk-WFB5TXRA.js";
-import "../chunks/chunk-EZPBJPK6.js";
+import "../chunks/chunk-3JANT2SW.js";
 import {
   filterSamples,
   walkRows

package/dist/figure.js

@@ -1,14 +1,14 @@
 import {
   figureSvg
-} from "./chunks/chunk-7PWMTUAK.js";
+} from "./chunks/chunk-2WA4EY25.js";
 import "./chunks/chunk-47DYCZOK.js";
-import "./chunks/chunk-MZ7QQRUJ.js";
-import "./chunks/chunk-JFNPL4UT.js";
+import "./chunks/chunk-KREASK3Z.js";
+import "./chunks/chunk-UGD6ZMOF.js";
 import "./chunks/chunk-CH3DLBUT.js";
 import "./chunks/chunk-4BYTEJGW.js";
 import "./chunks/chunk-3S3YVOJ7.js";
 import "./chunks/chunk-BUBZ32IC.js";
-import "./chunks/chunk-EOSVRILX.js";
+import "./chunks/chunk-MAPRJ2H2.js";
 import "./chunks/chunk-AWCMVPVP.js";
 import "./chunks/chunk-MH5IA57M.js";
 import "./chunks/chunk-TQ7VCGJR.js";
@@ -28,7 +28,7 @@ import "./chunks/chunk-GJMC3PGM.js";
 import "./chunks/chunk-FP4H7SFT.js";
 import "./chunks/chunk-MLSWIMZO.js";
 import "./chunks/chunk-WFB5TXRA.js";
-import "./chunks/chunk-EZPBJPK6.js";
+import "./chunks/chunk-3JANT2SW.js";
 import "./chunks/chunk-SZNZ2T6D.js";
 import "./chunks/chunk-E7FWQQHP.js";
 import "./chunks/chunk-ES2N6V56.js";

package/dist/index.js

@@ -73,7 +73,7 @@ import {
   LAYOUT_MODES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-WEMKWLDF.js";
+} from "./chunks/chunk-JKXE6CIP.js";
 import "./chunks/chunk-4FQTTG5F.js";
 import "./chunks/chunk-TEDQJPMI.js";
 import "./chunks/chunk-LOEA5IHZ.js";
@@ -87,12 +87,11 @@ import {
 } from "./chunks/chunk-7XHHVYG7.js";
 import {
   figureSvg
-} from "./chunks/chunk-7PWMTUAK.js";
+} from "./chunks/chunk-2WA4EY25.js";
 import {
   svgCanvas
 } from "./chunks/chunk-47DYCZOK.js";
 import {
-  LABELLED_ROW_PX,
   WALK_STRIP_CEILING_PX,
   segmentAt,
   stripGeneGaps,
@@ -101,21 +100,26 @@ import {
   walkMarksTree,
   walkStripFrame,
   walkStripLabelsTree
-} from "./chunks/chunk-MZ7QQRUJ.js";
+} from "./chunks/chunk-KREASK3Z.js";
 import {
   BAR_PX,
+  CALL_TICK,
   DISAGREES,
   GAP_PX,
   GENE_INK,
+  LABELLED_ROW_PX,
   OFF_REFERENCE,
   ON_REFERENCE,
   OUTSIDE_CUT,
+  UNBACKED_TICK,
   alongRow,
+  callTickInk,
   coalesceRuns,
   genesOnRow,
   placeRowGenes,
   readoutPlacement,
   rowGeneBoxes,
+  rowPitch,
   rowSpan,
   runPaint,
   unitTicks,
@@ -123,7 +127,7 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "./chunks/chunk-JFNPL4UT.js";
+} from "./chunks/chunk-UGD6ZMOF.js";
 import {
   Canvas2DRenderer
 } from "./chunks/chunk-CH3DLBUT.js";
@@ -140,7 +144,7 @@ import {
 } from "./chunks/chunk-BUBZ32IC.js";
 import {
   version
-} from "./chunks/chunk-EOSVRILX.js";
+} from "./chunks/chunk-MAPRJ2H2.js";
 import {
   axisScaleOf,
   contains,
@@ -217,7 +221,7 @@ import "./chunks/chunk-MLSWIMZO.js";
 import "./chunks/chunk-WFB5TXRA.js";
 import {
   walkRowsExtent
-} from "./chunks/chunk-EZPBJPK6.js";
+} from "./chunks/chunk-3JANT2SW.js";
 import {
   filterSamples,
   walkRows
@@ -322,6 +326,7 @@ export {
   REFERENCE_STRIP_ZONE_PX,
   ROW_HEIGHT_PX,
   BAR_PX as WALK_BAR_PX,
+  CALL_TICK as WALK_CALL_TICK,
   DISAGREES as WALK_DISAGREES,
   WALK_FIELDS,
   GAP_PX as WALK_GAP_PX,
@@ -331,6 +336,7 @@ export {
   OUTSIDE_CUT as WALK_OUTSIDE_CUT,
   WALK_SCHEMES,
   WALK_STRIP_CEILING_PX,
+  UNBACKED_TICK as WALK_UNBACKED_TICK,
   WELL_KNOWN_SAMPLES,
   alongRow,
   assemblyWalk,
@@ -341,6 +347,7 @@ export {
   bubbleSubgraph,
   bubblesFromGraph,
   buildGeometry,
+  callTickInk,
   clampZoom,
   classifyBubble,
   coalesceRuns,
@@ -423,6 +430,7 @@ export {
   resolveEncoding,
   resolveReferenceSample,
   rowGeneBoxes,
+  rowPitch,
   rowSpan,
   rulerBoxes,
   runPaint,

package/dist/layout/walkRowDraw.js

@@ -1,19 +1,24 @@
 import {
   BAR_PX,
+  CALL_TICK,
   DISAGREES,
   GAP_PX,
   GENE_INK,
+  LABELLED_ROW_PX,
   OFF_REFERENCE,
   ON_REFERENCE,
   OUTSIDE_CUT,
+  UNBACKED_TICK,
   alongRow,
   boxesGenes,
+  callTickInk,
   coalesceRuns,
   genesOnRow,
   kb,
   placeRowGenes,
   readoutPlacement,
   rowGeneBoxes,
+  rowPitch,
   rowSpan,
   runPaint,
   unitTicks,
@@ -21,7 +26,7 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "../chunks/chunk-JFNPL4UT.js";
+} from "../chunks/chunk-UGD6ZMOF.js";
 import "../chunks/chunk-VECR253P.js";
 import "../chunks/chunk-VST5SR4C.js";
 import "../chunks/chunk-UMNCCYBN.js";
@@ -41,20 +46,25 @@ import "../chunks/chunk-BPLIXMH7.js";
 import "../chunks/chunk-FYQWPEEY.js";
 export {
   BAR_PX,
+  CALL_TICK,
   DISAGREES,
   GAP_PX,
   GENE_INK,
+  LABELLED_ROW_PX,
   OFF_REFERENCE,
   ON_REFERENCE,
   OUTSIDE_CUT,
+  UNBACKED_TICK,
   alongRow,
   boxesGenes,
+  callTickInk,
   coalesceRuns,
   genesOnRow,
   kb,
   placeRowGenes,
   readoutPlacement,
   rowGeneBoxes,
+  rowPitch,
   rowSpan,
   runPaint,
   unitTicks,

package/dist/layout/walkRowLayout.js

@@ -1,7 +1,7 @@
 import {
   walkRowLayout,
   walkRowsExtent
-} from "../chunks/chunk-EZPBJPK6.js";
+} from "../chunks/chunk-3JANT2SW.js";
 import "../chunks/chunk-SZNZ2T6D.js";
 import "../chunks/chunk-ST2IBUAN.js";
 import "../chunks/chunk-CPMHA4W5.js";

package/dist/layout/walkStrip.js

@@ -1,5 +1,4 @@
 import {
-  LABELLED_ROW_PX,
   WALK_STRIP_CEILING_PX,
   segmentAt,
   stripGeneGaps,
@@ -8,8 +7,10 @@ import {
   walkMarksTree,
   walkStripFrame,
   walkStripLabelsTree
-} from "../chunks/chunk-MZ7QQRUJ.js";
-import "../chunks/chunk-JFNPL4UT.js";
+} from "../chunks/chunk-KREASK3Z.js";
+import {
+  LABELLED_ROW_PX
+} from "../chunks/chunk-UGD6ZMOF.js";
 import "../chunks/chunk-VECR253P.js";
 import "../chunks/chunk-VST5SR4C.js";
 import "../chunks/chunk-UMNCCYBN.js";

package/dist/layoutModes.js

@@ -4,7 +4,7 @@ import {
   LAYOUT_MODE_VALUES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-WEMKWLDF.js";
+} from "./chunks/chunk-JKXE6CIP.js";
 import "./chunks/chunk-4FQTTG5F.js";
 import "./chunks/chunk-TEDQJPMI.js";
 import "./chunks/chunk-LOEA5IHZ.js";
@@ -13,7 +13,7 @@ import "./chunks/chunk-TZFWUT2C.js";
 import "./chunks/chunk-RVS2QCOX.js";
 import "./chunks/chunk-HNQPEMYE.js";
 import "./chunks/chunk-C44YRP5F.js";
-import "./chunks/chunk-EZPBJPK6.js";
+import "./chunks/chunk-3JANT2SW.js";
 import "./chunks/chunk-SZNZ2T6D.js";
 import "./chunks/chunk-E7FWQQHP.js";
 import "./chunks/chunk-ES2N6V56.js";

package/dist/types/figure.d.ts

@@ -1,7 +1,7 @@
 import type { ColorScheme } from './colorSchemes.js';
 import type { FacetInput } from './facetGrid.js';
 import type { GeneModel } from './genes/genePins.js';
-import type { GeneGaps, RowGene, WalkRowsWithCalls } from './layout/walkRowDraw.js';
+import type { GeneGaps, RowGene, RowPitch, WalkRowsWithCalls } from './layout/walkRowDraw.js';
 import type { WalkRows } from './layout/walkRows.js';
 import type { NodeWidth } from './nodeWidths.js';
 import type { Graph, LayoutResult } from './types.js';
@@ -30,6 +30,7 @@ export interface FigureOptions {
     genes?: GeneModel[];
     spec?: unknown;
     walkRows?: WalkRowsWithCalls;
+    walkRowPitch?: RowPitch;
     rowGenes?: Map<string, RowGene[]>;
     rowGeneGaps?: GeneGaps;
     walkStrip?: {

package/dist/types/index.d.ts

@@ -59,8 +59,8 @@ export { bubbleSubgraph } from './bubbles/popBubble.js';
 export type { MinigraphBubble } from './bubbles/bubbleLine.js';
 export { filterSamples, walkRows } from './layout/walkRows.js';
 export type { WalkAxis, WalkRow, WalkRows, WalkRun } from './layout/walkRows.js';
-export { BAR_PX as WALK_BAR_PX, DISAGREES as WALK_DISAGREES, GAP_PX as WALK_GAP_PX, GENE_INK as WALK_GENE_INK, OFF_REFERENCE as WALK_OFF_REFERENCE, ON_REFERENCE as WALK_ON_REFERENCE, OUTSIDE_CUT as WALK_OUTSIDE_CUT, alongRow, coalesceRuns, genesOnRow, placeRowGenes, readoutPlacement, rowGeneBoxes, rowSpan, runPaint, unitTicks, walkRowReadout, walkRowsKey, walkRowsKeyTree, walkRowsTree, } from './layout/walkRowDraw.js';
-export type { GeneBox, GeneGaps, KeyEntry, KeySwatch, ReadoutCall, RowGene, WalkRowsFrame, WalkRowsWithCalls, } from './layout/walkRowDraw.js';
+export { BAR_PX as WALK_BAR_PX, CALL_TICK as WALK_CALL_TICK, DISAGREES as WALK_DISAGREES, GAP_PX as WALK_GAP_PX, GENE_INK as WALK_GENE_INK, OFF_REFERENCE as WALK_OFF_REFERENCE, ON_REFERENCE as WALK_ON_REFERENCE, OUTSIDE_CUT as WALK_OUTSIDE_CUT, UNBACKED_TICK as WALK_UNBACKED_TICK, alongRow, callTickInk, coalesceRuns, genesOnRow, placeRowGenes, readoutPlacement, rowGeneBoxes, rowPitch, rowSpan, runPaint, unitTicks, walkRowReadout, walkRowsKey, walkRowsKeyTree, walkRowsTree, } from './layout/walkRowDraw.js';
+export type { GeneBox, GeneGaps, KeyEntry, KeySwatch, ReadoutCall, RowGene, RowPitch, WalkRowsFrame, WalkRowsWithCalls, } from './layout/walkRowDraw.js';
 export { LABELLED_ROW_PX, WALK_STRIP_CEILING_PX, segmentAt, stripGeneGaps, stripMarks, stripRowAt, walkMarksTree, walkStripFrame, walkStripLabelsTree, } from './layout/walkStrip.js';
 export type { StripFrame, StripMark } from './layout/walkStrip.js';
 export { el, serializeEl } from './el.js';

package/dist/types/layout/walkRowDraw.d.ts

@@ -7,6 +7,7 @@ export declare const OUTSIDE_CUT = "#bdbdbd";
 export declare const GENE_INK = "#1c1c22";
 export declare const BAR_PX = 12;
 export declare const GAP_PX = 4;
+export declare const LABELLED_ROW_PX = 12;
 export declare function kb(bp: number): string;
 export interface ReadoutCall {
     bp: number;
@@ -109,11 +110,21 @@ export type WalkRowsWithCalls = Omit<WalkRows, 'reference' | 'rows'> & {
         call?: ReadoutCall;
     })[];
 };
+export declare const CALL_TICK = "#111";
+export declare const UNBACKED_TICK = "#9e9e9e";
 export declare const DISAGREES = "#c62828";
+export declare function callTickInk(call: ReadoutCall): "#111" | "#9e9e9e" | "#c62828";
 export declare function walkRowsKeyTree(entries: KeyEntry[], x: number, y: number, idPrefix?: string): {
     width: number;
     tree: El;
 };
+export interface RowPitch {
+    rowPx: number;
+    barPx: number;
+    labelled: boolean;
+    readouts: boolean;
+}
+export declare function rowPitch(count: number, room: number, minRowPx?: number): RowPitch;
 export interface WalkRowsFrame {
     scaleX: number;
     scaleY: number;

package/dist/types/layout/walkRowLayout.d.ts

@@ -1,6 +1,7 @@
+import type { RowPitch } from './walkRowDraw.js';
 import type { WalkRows } from './walkRows.js';
 import type { Graph, LayoutResult } from '../types.js';
-export declare function walkRowsExtent(walks: WalkRows): {
+export declare function walkRowsExtent(walks: WalkRows, pitch?: Pick<RowPitch, 'rowPx' | 'readouts'>): {
     maxX: number;
     maxY: number;
 };

package/dist/types/layout/walkStrip.d.ts

@@ -1,8 +1,8 @@
 import type { GeneGaps, RowGene, WalkRowsFrame } from './walkRowDraw.js';
 import type { WalkRow, WalkRows } from './walkRows.js';
 import type { Graph, GraphNode } from '../types.js';
+export { LABELLED_ROW_PX } from './walkRowDraw.js';
 export declare const WALK_STRIP_CEILING_PX = 260;
-export declare const LABELLED_ROW_PX = 12;
 export interface StripMark {
     row: string;
     start: number;

package/dist/types/version.d.ts

@@ -1 +1 @@
-export declare const version = "7.0.0";
+export declare const version = "7.1.0";

package/dist/version.js

@@ -1,6 +1,6 @@
 import {
   version
-} from "./chunks/chunk-EOSVRILX.js";
+} from "./chunks/chunk-MAPRJ2H2.js";
 export {
   version
 };

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/bandage-core",
-  "version": "7.0.0",
+  "version": "7.1.0",
   "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
   "license": "GPL-3.0-or-later",
   "repository": {