@jbrowse/bandage-core 6.2.0 → 7.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (59) hide show
  1. package/dist/chunks/{chunk-GOY6REMT.js → chunk-2LQ5BWT7.js} +1 -1
  2. package/dist/chunks/{chunk-N62KBLFC.js → chunk-3ZZSX5HN.js} +1 -1
  3. package/dist/chunks/{chunk-R6ZUK4Y3.js → chunk-4FQTTG5F.js} +1 -1
  4. package/dist/chunks/{chunk-YFRTTBCZ.js → chunk-6UFS3EWI.js} +3 -3
  5. package/dist/chunks/{chunk-5HF753RL.js → chunk-7PWMTUAK.js} +21 -18
  6. package/dist/chunks/{chunk-M6SAUIYR.js → chunk-AWCMVPVP.js} +1 -1
  7. package/dist/chunks/{chunk-P2KU2TXS.js → chunk-CNQSHEBS.js} +1 -1
  8. package/dist/chunks/{chunk-CS3E4ETM.js → chunk-DRA7733Q.js} +1 -1
  9. package/dist/chunks/{chunk-X5L37W4J.js → chunk-E7FWQQHP.js} +1 -1
  10. package/dist/chunks/{chunk-HE3NRWH7.js → chunk-EOSVRILX.js} +1 -1
  11. package/dist/chunks/{chunk-3GMVZMKD.js → chunk-EXSXBIMH.js} +1 -1
  12. package/dist/chunks/{chunk-YMSSF2RK.js → chunk-FP4H7SFT.js} +1 -1
  13. package/dist/chunks/{chunk-DKOB2OPC.js → chunk-GJMC3PGM.js} +3 -3
  14. package/dist/chunks/{chunk-YQZWW2V6.js → chunk-JFNPL4UT.js} +2 -2
  15. package/dist/chunks/{chunk-A7VOULBP.js → chunk-MH5IA57M.js} +1 -1
  16. package/dist/chunks/{chunk-MREQ7GIA.js → chunk-MLSWIMZO.js} +1 -1
  17. package/dist/chunks/{chunk-7R2UGY4I.js → chunk-MZ7QQRUJ.js} +1 -1
  18. package/dist/chunks/{chunk-4EMPBO7S.js → chunk-N6FECAXP.js} +51 -1
  19. package/dist/chunks/{chunk-CTSBC2O6.js → chunk-OWFPAIJI.js} +1 -1
  20. package/dist/chunks/{chunk-6CO564AN.js → chunk-TQ7VCGJR.js} +1 -1
  21. package/dist/chunks/{chunk-GD7FYNGS.js → chunk-VECR253P.js} +1 -1
  22. package/dist/chunks/{chunk-VUBLSA6P.js → chunk-VST5SR4C.js} +2 -2
  23. package/dist/chunks/{chunk-T43W7NKK.js → chunk-WEMKWLDF.js} +1 -1
  24. package/dist/chunks/{chunk-Y3IOTZJA.js → chunk-WFB5TXRA.js} +1 -1
  25. package/dist/chunks/{chunk-STNG3Y5X.js → chunk-YZ5CCEDH.js} +0 -30
  26. package/dist/cli/figure.js +22 -22
  27. package/dist/deletionEdges.js +5 -1
  28. package/dist/figure.js +19 -19
  29. package/dist/graphLabels.js +2 -2
  30. package/dist/index.js +27 -25
  31. package/dist/labelLayout.js +6 -6
  32. package/dist/layout/deletionRoutes.js +1 -3
  33. package/dist/layout/tubeMapLayout.js +4 -4
  34. package/dist/layout/walkRowDraw.js +7 -7
  35. package/dist/layout/walkStrip.js +8 -8
  36. package/dist/layoutModes.js +5 -5
  37. package/dist/pathColors.js +3 -3
  38. package/dist/pipeline.js +3 -3
  39. package/dist/referenceRampCss.js +6 -6
  40. package/dist/referenceStrip.js +6 -6
  41. package/dist/renderer/GeometryBuilder.js +5 -5
  42. package/dist/tubeMap/axis.js +3 -3
  43. package/dist/tubeMap/coarsen.js +4 -4
  44. package/dist/tubeMap/genes.js +4 -4
  45. package/dist/tubeMap/nodeColors.js +6 -6
  46. package/dist/types/deletionEdges.d.ts +7 -0
  47. package/dist/types/index.d.ts +2 -2
  48. package/dist/types/labelLayout.d.ts +0 -1
  49. package/dist/types/layout/deletionRoutes.d.ts +0 -1
  50. package/dist/types/version.d.ts +1 -1
  51. package/dist/util/SpatialIndex.js +3 -3
  52. package/dist/util/edgeCurves.js +2 -2
  53. package/dist/util/hitDetection.js +4 -4
  54. package/dist/version.js +1 -1
  55. package/dist/viewport.js +4 -4
  56. package/dist/walkEncoding.js +6 -6
  57. package/dist/walkHighlight.js +7 -7
  58. package/dist/walkKey.js +3 -3
  59. package/package.json +1 -1
package/dist/index.js CHANGED
@@ -22,17 +22,17 @@ import {
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  import {
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  drawTubeMapGenes,
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  tubeMapGenes
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- } from "./chunks/chunk-CTSBC2O6.js";
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+ } from "./chunks/chunk-OWFPAIJI.js";
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  import "./chunks/chunk-EJ5OZTCK.js";
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  import {
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  tubeMapNodeColors
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- } from "./chunks/chunk-P2KU2TXS.js";
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+ } from "./chunks/chunk-CNQSHEBS.js";
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  import {
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  drawTubeMapRuler,
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  referenceBoxes,
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  rulerBoxes,
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  tubeX
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- } from "./chunks/chunk-CS3E4ETM.js";
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+ } from "./chunks/chunk-DRA7733Q.js";
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  import {
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  bubbleHalos
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  } from "./chunks/chunk-ISEI2FH3.js";
@@ -60,7 +60,7 @@ import {
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  drawReferenceStrip,
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  referenceStripBlocks,
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  stripBlockAt
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- } from "./chunks/chunk-3GMVZMKD.js";
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+ } from "./chunks/chunk-EXSXBIMH.js";
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  import {
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  layoutEngine
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  } from "./chunks/chunk-L53SXJZI.js";
@@ -73,8 +73,8 @@ import {
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  LAYOUT_MODES,
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  layoutModeByValue,
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  modeUsesLayoutEngine
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- } from "./chunks/chunk-T43W7NKK.js";
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- import "./chunks/chunk-R6ZUK4Y3.js";
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+ } from "./chunks/chunk-WEMKWLDF.js";
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+ import "./chunks/chunk-4FQTTG5F.js";
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  import "./chunks/chunk-TEDQJPMI.js";
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  import "./chunks/chunk-LOEA5IHZ.js";
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  import "./chunks/chunk-L3O7AWLI.js";
@@ -87,7 +87,7 @@ import {
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  } from "./chunks/chunk-7XHHVYG7.js";
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  import {
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  figureSvg
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- } from "./chunks/chunk-5HF753RL.js";
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+ } from "./chunks/chunk-7PWMTUAK.js";
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  import {
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  svgCanvas
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  } from "./chunks/chunk-47DYCZOK.js";
@@ -101,7 +101,7 @@ import {
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  walkMarksTree,
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  walkStripFrame,
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  walkStripLabelsTree
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- } from "./chunks/chunk-7R2UGY4I.js";
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+ } from "./chunks/chunk-MZ7QQRUJ.js";
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  import {
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  BAR_PX,
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  DISAGREES,
@@ -123,7 +123,7 @@ import {
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  walkRowsKey,
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  walkRowsKeyTree,
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  walkRowsTree
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- } from "./chunks/chunk-YQZWW2V6.js";
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+ } from "./chunks/chunk-JFNPL4UT.js";
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  import {
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  Canvas2DRenderer
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  } from "./chunks/chunk-CH3DLBUT.js";
@@ -140,7 +140,7 @@ import {
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  } from "./chunks/chunk-BUBZ32IC.js";
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  import {
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  version
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- } from "./chunks/chunk-HE3NRWH7.js";
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+ } from "./chunks/chunk-EOSVRILX.js";
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  import {
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  axisScaleOf,
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  contains,
@@ -148,12 +148,12 @@ import {
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  screenToLayout,
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  viewportOf,
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  zoomAbout
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- } from "./chunks/chunk-M6SAUIYR.js";
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+ } from "./chunks/chunk-AWCMVPVP.js";
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  import {
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  facetLifts,
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  walkHighlight,
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  walkLift
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- } from "./chunks/chunk-A7VOULBP.js";
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+ } from "./chunks/chunk-MH5IA57M.js";
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  import {
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  WALK_FIELDS,
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  WALK_SCHEMES,
@@ -161,12 +161,12 @@ import {
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  encodingSwatchCss,
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  resolveEncoding,
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  schemeCss
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- } from "./chunks/chunk-6CO564AN.js";
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+ } from "./chunks/chunk-TQ7VCGJR.js";
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  import {
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  rangeText,
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  walkKey,
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  walkPosition
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- } from "./chunks/chunk-GOY6REMT.js";
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+ } from "./chunks/chunk-2LQ5BWT7.js";
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  import {
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  FIT_PADDING,
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  clampZoom,
@@ -177,24 +177,24 @@ import {
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  forceLayout,
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  layoutExtent,
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  loadGraph
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- } from "./chunks/chunk-YFRTTBCZ.js";
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+ } from "./chunks/chunk-6UFS3EWI.js";
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  import "./chunks/chunk-PUG7LXDF.js";
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  import "./chunks/chunk-IGVV37VI.js";
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  import "./chunks/chunk-72N5DJHZ.js";
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  import "./chunks/chunk-QYBZZI5H.js";
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  import "./chunks/chunk-CDLPYR5O.js";
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- import "./chunks/chunk-STNG3Y5X.js";
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+ import "./chunks/chunk-YZ5CCEDH.js";
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  import {
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  RAMP_GRADIENT_CSS,
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  rampHue,
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  rampHueCss,
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  rampStops
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- } from "./chunks/chunk-GD7FYNGS.js";
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+ } from "./chunks/chunk-VECR253P.js";
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  import {
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  REFERENCE_RAMP_MAX_HUE,
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  buildGeometry,
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  computeReferenceRamp
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- } from "./chunks/chunk-VUBLSA6P.js";
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+ } from "./chunks/chunk-VST5SR4C.js";
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  import "./chunks/chunk-UMNCCYBN.js";
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  import {
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  NODE_WIDTHS,
@@ -208,13 +208,13 @@ import {
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  LEGEND_INSET_PX,
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  geneCoverageNote,
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  layoutLabels
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- } from "./chunks/chunk-DKOB2OPC.js";
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+ } from "./chunks/chunk-GJMC3PGM.js";
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  import {
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  findHoveredEdge,
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  findHoveredNode
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- } from "./chunks/chunk-YMSSF2RK.js";
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- import "./chunks/chunk-MREQ7GIA.js";
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- import "./chunks/chunk-Y3IOTZJA.js";
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+ } from "./chunks/chunk-FP4H7SFT.js";
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+ import "./chunks/chunk-MLSWIMZO.js";
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+ import "./chunks/chunk-WFB5TXRA.js";
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  import {
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  walkRowsExtent
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  } from "./chunks/chunk-EZPBJPK6.js";
@@ -225,12 +225,12 @@ import {
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  import {
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  pathColorsLegible,
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  pathLegend
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- } from "./chunks/chunk-X5L37W4J.js";
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+ } from "./chunks/chunk-E7FWQQHP.js";
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  import "./chunks/chunk-ES2N6V56.js";
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  import "./chunks/chunk-ST2IBUAN.js";
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  import {
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  formatBp
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- } from "./chunks/chunk-N62KBLFC.js";
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+ } from "./chunks/chunk-3ZZSX5HN.js";
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  import {
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  LABEL_CHAR_PX,
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  LABEL_PAD,
@@ -246,8 +246,9 @@ import {
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  resolveColorScheme
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  } from "./chunks/chunk-JKJWSY4V.js";
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  import {
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+ deletionDrawing,
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  deletionEdges
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- } from "./chunks/chunk-4EMPBO7S.js";
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+ } from "./chunks/chunk-N6FECAXP.js";
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  import "./chunks/chunk-2CVHXFK7.js";
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  import {
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  ROW_HEIGHT_PX
@@ -348,6 +349,7 @@ export {
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  contains,
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  cutGbzRegion,
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  cutWindowGFA,
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+ deletionDrawing,
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  deletionEdges,
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  drawReferenceStrip,
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  drawTubeMap,
@@ -4,14 +4,14 @@ import {
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  geneCoverageNote,
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  geneLabelCandidates,
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  layoutLabels
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- } from "./chunks/chunk-DKOB2OPC.js";
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- import "./chunks/chunk-YMSSF2RK.js";
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- import "./chunks/chunk-MREQ7GIA.js";
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- import "./chunks/chunk-Y3IOTZJA.js";
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- import "./chunks/chunk-N62KBLFC.js";
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+ } from "./chunks/chunk-GJMC3PGM.js";
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+ import "./chunks/chunk-FP4H7SFT.js";
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+ import "./chunks/chunk-MLSWIMZO.js";
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+ import "./chunks/chunk-WFB5TXRA.js";
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+ import "./chunks/chunk-3ZZSX5HN.js";
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  import "./chunks/chunk-AB35TJST.js";
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  import "./chunks/chunk-TAMCZHLW.js";
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- import "./chunks/chunk-4EMPBO7S.js";
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+ import "./chunks/chunk-N6FECAXP.js";
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  import "./chunks/chunk-2CVHXFK7.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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  import "./chunks/chunk-FYQWPEEY.js";
@@ -1,11 +1,9 @@
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  import {
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- closableDeletions,
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  routeNodes,
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  takeRoutes,
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  withDeletionRoutes
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- } from "../chunks/chunk-STNG3Y5X.js";
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+ } from "../chunks/chunk-YZ5CCEDH.js";
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  export {
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- closableDeletions,
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  routeNodes,
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  takeRoutes,
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  withDeletionRoutes
@@ -5,15 +5,15 @@ import {
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  tubeMapTracks,
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  tubeWidth,
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  visitStrands
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- } from "../chunks/chunk-R6ZUK4Y3.js";
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+ } from "../chunks/chunk-4FQTTG5F.js";
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  import "../chunks/chunk-TEDQJPMI.js";
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  import "../chunks/chunk-C44YRP5F.js";
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- import "../chunks/chunk-X5L37W4J.js";
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+ import "../chunks/chunk-E7FWQQHP.js";
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  import "../chunks/chunk-ST2IBUAN.js";
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- import "../chunks/chunk-N62KBLFC.js";
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+ import "../chunks/chunk-3ZZSX5HN.js";
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  import "../chunks/chunk-AB35TJST.js";
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  import "../chunks/chunk-TAMCZHLW.js";
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- import "../chunks/chunk-4EMPBO7S.js";
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+ import "../chunks/chunk-N6FECAXP.js";
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  import "../chunks/chunk-2CVHXFK7.js";
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  import "../chunks/chunk-CPMHA4W5.js";
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  import "../chunks/chunk-BPLIXMH7.js";
@@ -21,19 +21,19 @@ import {
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  walkRowsKey,
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  walkRowsKeyTree,
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  walkRowsTree
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- } from "../chunks/chunk-YQZWW2V6.js";
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- import "../chunks/chunk-GD7FYNGS.js";
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- import "../chunks/chunk-VUBLSA6P.js";
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+ } from "../chunks/chunk-JFNPL4UT.js";
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+ import "../chunks/chunk-VECR253P.js";
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+ import "../chunks/chunk-VST5SR4C.js";
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  import "../chunks/chunk-UMNCCYBN.js";
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  import "../chunks/chunk-PBENCR5L.js";
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- import "../chunks/chunk-Y3IOTZJA.js";
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- import "../chunks/chunk-X5L37W4J.js";
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+ import "../chunks/chunk-WFB5TXRA.js";
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+ import "../chunks/chunk-E7FWQQHP.js";
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  import "../chunks/chunk-ES2N6V56.js";
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  import "../chunks/chunk-ST2IBUAN.js";
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- import "../chunks/chunk-N62KBLFC.js";
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+ import "../chunks/chunk-3ZZSX5HN.js";
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  import "../chunks/chunk-AB35TJST.js";
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  import "../chunks/chunk-TAMCZHLW.js";
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- import "../chunks/chunk-4EMPBO7S.js";
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+ import "../chunks/chunk-N6FECAXP.js";
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  import "../chunks/chunk-2CVHXFK7.js";
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  import "../chunks/chunk-CPMHA4W5.js";
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  import "../chunks/chunk-NNODIW4U.js";
@@ -8,20 +8,20 @@ import {
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  walkMarksTree,
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  walkStripFrame,
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  walkStripLabelsTree
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- } from "../chunks/chunk-7R2UGY4I.js";
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- import "../chunks/chunk-YQZWW2V6.js";
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- import "../chunks/chunk-GD7FYNGS.js";
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- import "../chunks/chunk-VUBLSA6P.js";
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+ } from "../chunks/chunk-MZ7QQRUJ.js";
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+ import "../chunks/chunk-JFNPL4UT.js";
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+ import "../chunks/chunk-VECR253P.js";
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+ import "../chunks/chunk-VST5SR4C.js";
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  import "../chunks/chunk-UMNCCYBN.js";
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  import "../chunks/chunk-PBENCR5L.js";
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- import "../chunks/chunk-Y3IOTZJA.js";
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- import "../chunks/chunk-X5L37W4J.js";
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+ import "../chunks/chunk-WFB5TXRA.js";
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+ import "../chunks/chunk-E7FWQQHP.js";
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  import "../chunks/chunk-ES2N6V56.js";
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  import "../chunks/chunk-ST2IBUAN.js";
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- import "../chunks/chunk-N62KBLFC.js";
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+ import "../chunks/chunk-3ZZSX5HN.js";
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  import "../chunks/chunk-AB35TJST.js";
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  import "../chunks/chunk-TAMCZHLW.js";
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- import "../chunks/chunk-4EMPBO7S.js";
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+ import "../chunks/chunk-N6FECAXP.js";
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  import "../chunks/chunk-2CVHXFK7.js";
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  import "../chunks/chunk-CPMHA4W5.js";
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  import "../chunks/chunk-NNODIW4U.js";
@@ -4,8 +4,8 @@ import {
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  LAYOUT_MODE_VALUES,
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  layoutModeByValue,
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  modeUsesLayoutEngine
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- } from "./chunks/chunk-T43W7NKK.js";
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- import "./chunks/chunk-R6ZUK4Y3.js";
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+ } from "./chunks/chunk-WEMKWLDF.js";
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+ import "./chunks/chunk-4FQTTG5F.js";
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  import "./chunks/chunk-TEDQJPMI.js";
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  import "./chunks/chunk-LOEA5IHZ.js";
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  import "./chunks/chunk-L3O7AWLI.js";
@@ -15,13 +15,13 @@ import "./chunks/chunk-HNQPEMYE.js";
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  import "./chunks/chunk-C44YRP5F.js";
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  import "./chunks/chunk-EZPBJPK6.js";
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  import "./chunks/chunk-SZNZ2T6D.js";
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- import "./chunks/chunk-X5L37W4J.js";
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+ import "./chunks/chunk-E7FWQQHP.js";
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  import "./chunks/chunk-ES2N6V56.js";
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  import "./chunks/chunk-ST2IBUAN.js";
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- import "./chunks/chunk-N62KBLFC.js";
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+ import "./chunks/chunk-3ZZSX5HN.js";
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  import "./chunks/chunk-AB35TJST.js";
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  import "./chunks/chunk-TAMCZHLW.js";
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- import "./chunks/chunk-4EMPBO7S.js";
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+ import "./chunks/chunk-N6FECAXP.js";
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  import "./chunks/chunk-2CVHXFK7.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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  import "./chunks/chunk-BPLIXMH7.js";
@@ -8,12 +8,12 @@ import {
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  pathGreyCssColor,
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  pathHueAt,
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  pathLegend
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- } from "./chunks/chunk-X5L37W4J.js";
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+ } from "./chunks/chunk-E7FWQQHP.js";
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  import "./chunks/chunk-ST2IBUAN.js";
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- import "./chunks/chunk-N62KBLFC.js";
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+ import "./chunks/chunk-3ZZSX5HN.js";
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  import "./chunks/chunk-TAMCZHLW.js";
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- import "./chunks/chunk-4EMPBO7S.js";
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+ import "./chunks/chunk-N6FECAXP.js";
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  import "./chunks/chunk-BPLIXMH7.js";
package/dist/pipeline.js CHANGED
@@ -9,19 +9,19 @@ import {
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  forceLayout,
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  layoutExtent,
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  loadGraph
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- } from "./chunks/chunk-YFRTTBCZ.js";
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+ } from "./chunks/chunk-6UFS3EWI.js";
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  import "./chunks/chunk-PUG7LXDF.js";
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  import "./chunks/chunk-IGVV37VI.js";
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  import "./chunks/chunk-72N5DJHZ.js";
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  import "./chunks/chunk-QYBZZI5H.js";
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  import "./chunks/chunk-CDLPYR5O.js";
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- import "./chunks/chunk-STNG3Y5X.js";
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+ import "./chunks/chunk-YZ5CCEDH.js";
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  import "./chunks/chunk-ES2N6V56.js";
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  import "./chunks/chunk-ST2IBUAN.js";
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  import "./chunks/chunk-TAMCZHLW.js";
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  import "./chunks/chunk-UVBGRJQX.js";
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  import "./chunks/chunk-6JEWNXCQ.js";
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- import "./chunks/chunk-4EMPBO7S.js";
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+ import "./chunks/chunk-N6FECAXP.js";
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  import "./chunks/chunk-2CVHXFK7.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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  import "./chunks/chunk-BPLIXMH7.js";
@@ -4,18 +4,18 @@ import {
4
4
  rampHue,
5
5
  rampHueCss,
6
6
  rampStops
7
- } from "./chunks/chunk-GD7FYNGS.js";
8
- import "./chunks/chunk-VUBLSA6P.js";
7
+ } from "./chunks/chunk-VECR253P.js";
8
+ import "./chunks/chunk-VST5SR4C.js";
9
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  import "./chunks/chunk-UMNCCYBN.js";
10
10
  import "./chunks/chunk-PBENCR5L.js";
11
- import "./chunks/chunk-Y3IOTZJA.js";
12
- import "./chunks/chunk-X5L37W4J.js";
11
+ import "./chunks/chunk-WFB5TXRA.js";
12
+ import "./chunks/chunk-E7FWQQHP.js";
13
13
  import "./chunks/chunk-ES2N6V56.js";
14
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  import "./chunks/chunk-ST2IBUAN.js";
15
- import "./chunks/chunk-N62KBLFC.js";
15
+ import "./chunks/chunk-3ZZSX5HN.js";
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  import "./chunks/chunk-AB35TJST.js";
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  import "./chunks/chunk-TAMCZHLW.js";
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- import "./chunks/chunk-4EMPBO7S.js";
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+ import "./chunks/chunk-N6FECAXP.js";
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  import "./chunks/chunk-2CVHXFK7.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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  import "./chunks/chunk-BPLIXMH7.js";
@@ -7,18 +7,18 @@ import {
7
7
  stripBlockAt,
8
8
  stripOverhang,
9
9
  stripPixels
10
- } from "./chunks/chunk-3GMVZMKD.js";
11
- import "./chunks/chunk-VUBLSA6P.js";
10
+ } from "./chunks/chunk-EXSXBIMH.js";
11
+ import "./chunks/chunk-VST5SR4C.js";
12
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  import "./chunks/chunk-UMNCCYBN.js";
13
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  import "./chunks/chunk-PBENCR5L.js";
14
- import "./chunks/chunk-Y3IOTZJA.js";
15
- import "./chunks/chunk-X5L37W4J.js";
14
+ import "./chunks/chunk-WFB5TXRA.js";
15
+ import "./chunks/chunk-E7FWQQHP.js";
16
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  import "./chunks/chunk-ES2N6V56.js";
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  import "./chunks/chunk-ST2IBUAN.js";
18
- import "./chunks/chunk-N62KBLFC.js";
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+ import "./chunks/chunk-3ZZSX5HN.js";
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  import "./chunks/chunk-AB35TJST.js";
20
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  import "./chunks/chunk-TAMCZHLW.js";
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- import "./chunks/chunk-4EMPBO7S.js";
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+ import "./chunks/chunk-N6FECAXP.js";
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  import "./chunks/chunk-2CVHXFK7.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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  import "./chunks/chunk-BPLIXMH7.js";
@@ -11,17 +11,17 @@ import {
11
11
  endTangent,
12
12
  getNodeColor,
13
13
  hslToRgb
14
- } from "../chunks/chunk-VUBLSA6P.js";
14
+ } from "../chunks/chunk-VST5SR4C.js";
15
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  import "../chunks/chunk-UMNCCYBN.js";
16
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  import "../chunks/chunk-PBENCR5L.js";
17
- import "../chunks/chunk-Y3IOTZJA.js";
18
- import "../chunks/chunk-X5L37W4J.js";
17
+ import "../chunks/chunk-WFB5TXRA.js";
18
+ import "../chunks/chunk-E7FWQQHP.js";
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19
  import "../chunks/chunk-ES2N6V56.js";
20
20
  import "../chunks/chunk-ST2IBUAN.js";
21
- import "../chunks/chunk-N62KBLFC.js";
21
+ import "../chunks/chunk-3ZZSX5HN.js";
22
22
  import "../chunks/chunk-AB35TJST.js";
23
23
  import "../chunks/chunk-TAMCZHLW.js";
24
- import "../chunks/chunk-4EMPBO7S.js";
24
+ import "../chunks/chunk-N6FECAXP.js";
25
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  import "../chunks/chunk-2CVHXFK7.js";
26
26
  import "../chunks/chunk-CPMHA4W5.js";
27
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  import "../chunks/chunk-BPLIXMH7.js";
@@ -6,11 +6,11 @@ import {
6
6
  rulerMarks,
7
7
  tubeSpan,
8
8
  tubeX
9
- } from "../chunks/chunk-CS3E4ETM.js";
10
- import "../chunks/chunk-N62KBLFC.js";
9
+ } from "../chunks/chunk-DRA7733Q.js";
10
+ import "../chunks/chunk-3ZZSX5HN.js";
11
11
  import "../chunks/chunk-AB35TJST.js";
12
12
  import "../chunks/chunk-TAMCZHLW.js";
13
- import "../chunks/chunk-4EMPBO7S.js";
13
+ import "../chunks/chunk-N6FECAXP.js";
14
14
  import "../chunks/chunk-2CVHXFK7.js";
15
15
  import "../chunks/chunk-CPMHA4W5.js";
16
16
  import "../chunks/chunk-FYQWPEEY.js";
@@ -1,18 +1,18 @@
1
1
  import {
2
2
  visitStrands
3
- } from "../chunks/chunk-R6ZUK4Y3.js";
3
+ } from "../chunks/chunk-4FQTTG5F.js";
4
4
  import {
5
5
  canonicalStrand
6
6
  } from "../chunks/chunk-TEDQJPMI.js";
7
7
  import "../chunks/chunk-C44YRP5F.js";
8
- import "../chunks/chunk-X5L37W4J.js";
8
+ import "../chunks/chunk-E7FWQQHP.js";
9
9
  import {
10
10
  pathOrigin
11
11
  } from "../chunks/chunk-ST2IBUAN.js";
12
- import "../chunks/chunk-N62KBLFC.js";
12
+ import "../chunks/chunk-3ZZSX5HN.js";
13
13
  import "../chunks/chunk-AB35TJST.js";
14
14
  import "../chunks/chunk-TAMCZHLW.js";
15
- import "../chunks/chunk-4EMPBO7S.js";
15
+ import "../chunks/chunk-N6FECAXP.js";
16
16
  import "../chunks/chunk-2CVHXFK7.js";
17
17
  import "../chunks/chunk-CPMHA4W5.js";
18
18
  import "../chunks/chunk-BPLIXMH7.js";
@@ -3,12 +3,12 @@ import {
3
3
  drawTubeMapGenes,
4
4
  tubeMapGeneRows,
5
5
  tubeMapGenes
6
- } from "../chunks/chunk-CTSBC2O6.js";
7
- import "../chunks/chunk-CS3E4ETM.js";
8
- import "../chunks/chunk-N62KBLFC.js";
6
+ } from "../chunks/chunk-OWFPAIJI.js";
7
+ import "../chunks/chunk-DRA7733Q.js";
8
+ import "../chunks/chunk-3ZZSX5HN.js";
9
9
  import "../chunks/chunk-AB35TJST.js";
10
10
  import "../chunks/chunk-TAMCZHLW.js";
11
- import "../chunks/chunk-4EMPBO7S.js";
11
+ import "../chunks/chunk-N6FECAXP.js";
12
12
  import "../chunks/chunk-2CVHXFK7.js";
13
13
  import "../chunks/chunk-CPMHA4W5.js";
14
14
  import "../chunks/chunk-FYQWPEEY.js";
@@ -1,17 +1,17 @@
1
1
  import {
2
2
  tubeMapNodeColors
3
- } from "../chunks/chunk-P2KU2TXS.js";
4
- import "../chunks/chunk-VUBLSA6P.js";
3
+ } from "../chunks/chunk-CNQSHEBS.js";
4
+ import "../chunks/chunk-VST5SR4C.js";
5
5
  import "../chunks/chunk-UMNCCYBN.js";
6
6
  import "../chunks/chunk-PBENCR5L.js";
7
- import "../chunks/chunk-Y3IOTZJA.js";
8
- import "../chunks/chunk-X5L37W4J.js";
7
+ import "../chunks/chunk-WFB5TXRA.js";
8
+ import "../chunks/chunk-E7FWQQHP.js";
9
9
  import "../chunks/chunk-ES2N6V56.js";
10
10
  import "../chunks/chunk-ST2IBUAN.js";
11
- import "../chunks/chunk-N62KBLFC.js";
11
+ import "../chunks/chunk-3ZZSX5HN.js";
12
12
  import "../chunks/chunk-AB35TJST.js";
13
13
  import "../chunks/chunk-TAMCZHLW.js";
14
- import "../chunks/chunk-4EMPBO7S.js";
14
+ import "../chunks/chunk-N6FECAXP.js";
15
15
  import "../chunks/chunk-2CVHXFK7.js";
16
16
  import "../chunks/chunk-CPMHA4W5.js";
17
17
  import "../chunks/chunk-BPLIXMH7.js";
@@ -24,3 +24,10 @@ export declare function deletionArcCurves(nodePositions: Record<string, {
24
24
  y: number;
25
25
  }[]>, deletion: DeletionEdge, axis: AxisScale, route?: NodeSegment[], stranded?: boolean): import("./util/geometry.js").BezierCurve[] | undefined;
26
26
  export declare function deletionEdges(graph: Graph): DeletionEdge[];
27
+ export declare function closableDeletions(graph: Graph, deletions: DeletionEdge[]): Set<number>;
28
+ export interface DeletionDrawing {
29
+ shown: DeletionEdge[];
30
+ bypassed: Map<number, string[]>;
31
+ hidden: ReadonlySet<number>;
32
+ }
33
+ export declare function deletionDrawing(graph: Graph, deletions: DeletionEdge[], show?: boolean): DeletionDrawing;
@@ -34,8 +34,8 @@ export type { TubeMapGene } from './tubeMap/genes.js';
34
34
  export { connectorAt, drawTubeMapConnectors, referenceNodes, tubeMapConnectors, } from './tubeMap/connectors.js';
35
35
  export type { Connector, ReferenceNode } from './tubeMap/connectors.js';
36
36
  export type { TubeMapColumn, TubeMapDrawing } from './layout/tubeMapLayout.js';
37
- export { deletionEdges } from './deletionEdges.js';
38
- export type { DeletionEdge } from './deletionEdges.js';
37
+ export { deletionDrawing, deletionEdges } from './deletionEdges.js';
38
+ export type { DeletionDrawing, DeletionEdge } from './deletionEdges.js';
39
39
  export { facetLifts, walkHighlight, walkLift } from './walkHighlight.js';
40
40
  export { rangeText, walkKey, walkPosition } from './walkKey.js';
41
41
  export { figureSvg } from './figure.js';
@@ -32,7 +32,6 @@ export interface LabelLayoutSource {
32
32
  nodePositions?: Record<string, NodeSegment[]>;
33
33
  labelsNodeSizes: boolean;
34
34
  nodeLengths: Map<string, number>;
35
- showDeletionEdges: boolean;
36
35
  deletions: DeletionEdge[];
37
36
  deletionRoutes?: DeletionRoutes;
38
37
  stranded?: boolean;
@@ -22,7 +22,6 @@ export declare function withDeletionRoutes(graph: Graph, deletions: DeletionEdge
22
22
  routes: Map<number, string>;
23
23
  ids: Set<string>;
24
24
  };
25
- export declare function closableDeletions(graph: Graph, deletions: DeletionEdge[]): Set<number>;
26
25
  export declare function routeNodes(graph: Graph, deletions: DeletionEdge[], routes: Map<number, string>, drawnOf: (bp: number) => number, opts: BandageScaleOpts): GraphNode[];
27
26
  export declare function takeRoutes(positions: Record<string, NodeSegment[]>, routes: Map<number, string>): {
28
27
  nodePositions: {
@@ -1 +1 @@
1
- export declare const version = "6.2.0";
1
+ export declare const version = "7.0.0";
@@ -1,9 +1,9 @@
1
1
  import {
2
2
  EdgeSpatialIndex,
3
3
  SpatialIndex
4
- } from "../chunks/chunk-MREQ7GIA.js";
5
- import "../chunks/chunk-Y3IOTZJA.js";
6
- import "../chunks/chunk-4EMPBO7S.js";
4
+ } from "../chunks/chunk-MLSWIMZO.js";
5
+ import "../chunks/chunk-WFB5TXRA.js";
6
+ import "../chunks/chunk-N6FECAXP.js";
7
7
  import "../chunks/chunk-2CVHXFK7.js";
8
8
  import "../chunks/chunk-CPMHA4W5.js";
9
9
  import "../chunks/chunk-FYQWPEEY.js";
@@ -1,7 +1,7 @@
1
1
  import {
2
2
  baseEdgeCurves
3
- } from "../chunks/chunk-Y3IOTZJA.js";
4
- import "../chunks/chunk-4EMPBO7S.js";
3
+ } from "../chunks/chunk-WFB5TXRA.js";
4
+ import "../chunks/chunk-N6FECAXP.js";
5
5
  import "../chunks/chunk-2CVHXFK7.js";
6
6
  import "../chunks/chunk-CPMHA4W5.js";
7
7
  import "../chunks/chunk-FYQWPEEY.js";
@@ -4,10 +4,10 @@ import {
4
4
  findHoveredEdge,
5
5
  findHoveredNode,
6
6
  nodesUnderBox
7
- } from "../chunks/chunk-YMSSF2RK.js";
8
- import "../chunks/chunk-MREQ7GIA.js";
9
- import "../chunks/chunk-Y3IOTZJA.js";
10
- import "../chunks/chunk-4EMPBO7S.js";
7
+ } from "../chunks/chunk-FP4H7SFT.js";
8
+ import "../chunks/chunk-MLSWIMZO.js";
9
+ import "../chunks/chunk-WFB5TXRA.js";
10
+ import "../chunks/chunk-N6FECAXP.js";
11
11
  import "../chunks/chunk-2CVHXFK7.js";
12
12
  import "../chunks/chunk-CPMHA4W5.js";
13
13
  import "../chunks/chunk-FYQWPEEY.js";
package/dist/version.js CHANGED
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  version
3
- } from "./chunks/chunk-HE3NRWH7.js";
3
+ } from "./chunks/chunk-EOSVRILX.js";
4
4
  export {
5
5
  version
6
6
  };