@jbrowse/bandage-core 6.1.1 → 7.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/chunks/{chunk-GOY6REMT.js → chunk-2LQ5BWT7.js} +1 -1
- package/dist/chunks/{chunk-N62KBLFC.js → chunk-3ZZSX5HN.js} +1 -1
- package/dist/chunks/{chunk-R6ZUK4Y3.js → chunk-4FQTTG5F.js} +1 -1
- package/dist/chunks/{chunk-7UIMNBJT.js → chunk-6UFS3EWI.js} +6 -5
- package/dist/chunks/{chunk-OSDI57GY.js → chunk-7PWMTUAK.js} +27 -24
- package/dist/chunks/{chunk-XJWN753L.js → chunk-AWCMVPVP.js} +1 -1
- package/dist/chunks/{chunk-ZZA2AFB4.js → chunk-CNQSHEBS.js} +1 -1
- package/dist/chunks/{chunk-CS3E4ETM.js → chunk-DRA7733Q.js} +1 -1
- package/dist/chunks/{chunk-X5L37W4J.js → chunk-E7FWQQHP.js} +1 -1
- package/dist/chunks/{chunk-XH43CLO2.js → chunk-EOSVRILX.js} +1 -1
- package/dist/chunks/{chunk-SMQ545MU.js → chunk-EXSXBIMH.js} +1 -1
- package/dist/chunks/{chunk-YMSSF2RK.js → chunk-FP4H7SFT.js} +1 -1
- package/dist/chunks/{chunk-DKOB2OPC.js → chunk-GJMC3PGM.js} +3 -3
- package/dist/chunks/{chunk-PJESIRDU.js → chunk-JFNPL4UT.js} +2 -2
- package/dist/chunks/chunk-L53SXJZI.js +22 -0
- package/dist/chunks/{chunk-ZKGM7VLA.js → chunk-MH5IA57M.js} +1 -1
- package/dist/chunks/{chunk-MREQ7GIA.js → chunk-MLSWIMZO.js} +1 -1
- package/dist/chunks/{chunk-V5BPIOLS.js → chunk-MZ7QQRUJ.js} +1 -1
- package/dist/chunks/{chunk-4EMPBO7S.js → chunk-N6FECAXP.js} +51 -1
- package/dist/chunks/chunk-O4TGF4WS.js +503 -0
- package/dist/chunks/{chunk-CTSBC2O6.js → chunk-OWFPAIJI.js} +1 -1
- package/dist/chunks/{chunk-X4VVPLI5.js → chunk-TQ7VCGJR.js} +1 -1
- package/dist/chunks/{chunk-ZHCDYSA5.js → chunk-VECR253P.js} +1 -1
- package/dist/chunks/{chunk-RX5CSWJW.js → chunk-VST5SR4C.js} +6 -6
- package/dist/chunks/{chunk-T43W7NKK.js → chunk-WEMKWLDF.js} +1 -1
- package/dist/chunks/{chunk-Y3IOTZJA.js → chunk-WFB5TXRA.js} +1 -1
- package/dist/chunks/{chunk-STNG3Y5X.js → chunk-YZ5CCEDH.js} +0 -30
- package/dist/cli/figure.js +33 -36
- package/dist/deletionEdges.js +5 -1
- package/dist/figure.js +22 -22
- package/dist/graphLabels.js +2 -2
- package/dist/index.js +59 -47
- package/dist/labelLayout.js +6 -6
- package/dist/layout/deletionRoutes.js +1 -3
- package/dist/layout/stressEngine.js +11 -0
- package/dist/layout/tubeMapLayout.js +4 -4
- package/dist/layout/walkRowDraw.js +9 -9
- package/dist/layout/walkStrip.js +10 -10
- package/dist/layoutEngines.js +9 -0
- package/dist/layoutModes.js +7 -7
- package/dist/pathColors.js +3 -3
- package/dist/pipeline.js +4 -4
- package/dist/referenceRampCss.js +8 -8
- package/dist/referenceStrip.js +8 -8
- package/dist/renderer/GeometryBuilder.js +7 -7
- package/dist/tubeMap/axis.js +3 -3
- package/dist/tubeMap/coarsen.js +4 -4
- package/dist/tubeMap/genes.js +4 -4
- package/dist/tubeMap/nodeColors.js +8 -8
- package/dist/types/cli/figure.d.ts +2 -0
- package/dist/types/deletionEdges.d.ts +7 -0
- package/dist/types/index.d.ts +5 -2
- package/dist/types/labelLayout.d.ts +0 -1
- package/dist/types/layout/deletionRoutes.d.ts +0 -1
- package/dist/types/layout/stressEngine.d.ts +19 -0
- package/dist/types/layoutEngines.d.ts +2 -0
- package/dist/types/pipeline.d.ts +2 -0
- package/dist/types/version.d.ts +1 -1
- package/dist/util/SpatialIndex.js +3 -3
- package/dist/util/edgeCurves.js +2 -2
- package/dist/util/hitDetection.js +4 -4
- package/dist/version.js +1 -1
- package/dist/viewport.js +5 -5
- package/dist/walkEncoding.js +8 -8
- package/dist/walkHighlight.js +9 -9
- package/dist/walkKey.js +3 -3
- package/package.json +1 -1
package/dist/cli/figure.js
CHANGED
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@@ -4,72 +4,74 @@ import {
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genesFromGff3Lines,
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genesFromText
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} from "../chunks/chunk-BXEPA4KS.js";
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import {
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layoutEngine
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} from "../chunks/chunk-L53SXJZI.js";
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import "../chunks/chunk-O4TGF4WS.js";
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import {
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LAYOUT_MODES,
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layoutModeByValue
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} from "../chunks/chunk-
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import "../chunks/chunk-
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} from "../chunks/chunk-WEMKWLDF.js";
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import "../chunks/chunk-4FQTTG5F.js";
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import "../chunks/chunk-TEDQJPMI.js";
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import "../chunks/chunk-RVS2QCOX.js";
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import "../chunks/chunk-HNQPEMYE.js";
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import "../chunks/chunk-
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import {
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loadBandage
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} from "../chunks/chunk-7XHHVYG7.js";
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import "../chunks/chunk-7XHHVYG7.js";
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import {
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figureSvg
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} from "../chunks/chunk-
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} from "../chunks/chunk-7PWMTUAK.js";
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import "../chunks/chunk-47DYCZOK.js";
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import "../chunks/chunk-
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import "../chunks/chunk-MZ7QQRUJ.js";
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import {
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genesOnRow,
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placeRowGenes
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} from "../chunks/chunk-
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} from "../chunks/chunk-JFNPL4UT.js";
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import "../chunks/chunk-CH3DLBUT.js";
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import "../chunks/chunk-4BYTEJGW.js";
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import "../chunks/chunk-BUBZ32IC.js";
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import "../chunks/chunk-3S3YVOJ7.js";
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import "../chunks/chunk-
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import "../chunks/chunk-
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import "../chunks/chunk-
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import "../chunks/chunk-
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import "../chunks/chunk-
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import "../chunks/chunk-BUBZ32IC.js";
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import "../chunks/chunk-EOSVRILX.js";
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import "../chunks/chunk-AWCMVPVP.js";
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import "../chunks/chunk-MH5IA57M.js";
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import "../chunks/chunk-TQ7VCGJR.js";
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import "../chunks/chunk-2LQ5BWT7.js";
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import {
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forceLayout,
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loadGraph
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} from "../chunks/chunk-
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} from "../chunks/chunk-6UFS3EWI.js";
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import "../chunks/chunk-
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import "../chunks/chunk-
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import "../chunks/chunk-YZ5CCEDH.js";
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import "../chunks/chunk-VECR253P.js";
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import "../chunks/chunk-VST5SR4C.js";
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import "../chunks/chunk-
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import "../chunks/chunk-PBENCR5L.js";
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import "../chunks/chunk-GJMC3PGM.js";
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import "../chunks/chunk-MLSWIMZO.js";
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import "../chunks/chunk-WFB5TXRA.js";
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import {
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filterSamples,
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walkRows
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} from "../chunks/chunk-SZNZ2T6D.js";
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import "../chunks/chunk-
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import "../chunks/chunk-ST2IBUAN.js";
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import "../chunks/chunk-
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import "../chunks/chunk-ST2IBUAN.js";
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import "../chunks/chunk-PBENCR5L.js";
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import "../chunks/chunk-
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import "../chunks/chunk-N6FECAXP.js";
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@@ -178,12 +180,6 @@ async function indexedGenes(file, index, format, contigs, bind) {
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features: format === "gff3" ? genesFromGff3Lines(lines) : genesFromBed(lines.join("\n"))
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};
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}
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var engine = async (request) => {
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};
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try {
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linearLayout: false,
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engine: spec.engine,
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package/dist/deletionEdges.js
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import {
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} from "./chunks/chunk-N6FECAXP.js";
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package/dist/graphLabels.js
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|
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|
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|
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|
package/dist/labelLayout.js
CHANGED
|
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|
|
|
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4
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geneCoverageNote,
|
|
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5
|
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|
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|
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|
|
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|
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|
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|
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|
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|
+
} from "./chunks/chunk-GJMC3PGM.js";
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|
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import "./chunks/chunk-FP4H7SFT.js";
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import "./chunks/chunk-MLSWIMZO.js";
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|
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|
|
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5
|
tubeMapTracks,
|
|
6
6
|
tubeWidth,
|
|
7
7
|
visitStrands
|
|
8
|
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} from "../chunks/chunk-
|
|
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|
+
} from "../chunks/chunk-4FQTTG5F.js";
|
|
9
9
|
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|
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|
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|
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@@ -21,19 +21,19 @@ import {
|
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21
21
|
walkRowsKey,
|
|
22
22
|
walkRowsKeyTree,
|
|
23
23
|
walkRowsTree
|
|
24
|
-
} from "../chunks/chunk-
|
|
25
|
-
import "../chunks/chunk-
|
|
26
|
-
import "../chunks/chunk-
|
|
24
|
+
} from "../chunks/chunk-JFNPL4UT.js";
|
|
25
|
+
import "../chunks/chunk-VECR253P.js";
|
|
26
|
+
import "../chunks/chunk-VST5SR4C.js";
|
|
27
27
|
import "../chunks/chunk-UMNCCYBN.js";
|
|
28
|
-
import "../chunks/chunk-
|
|
29
|
-
import "../chunks/chunk-
|
|
30
|
-
import "../chunks/chunk-
|
|
28
|
+
import "../chunks/chunk-PBENCR5L.js";
|
|
29
|
+
import "../chunks/chunk-WFB5TXRA.js";
|
|
30
|
+
import "../chunks/chunk-E7FWQQHP.js";
|
|
31
31
|
import "../chunks/chunk-ES2N6V56.js";
|
|
32
|
-
import "../chunks/chunk-
|
|
32
|
+
import "../chunks/chunk-ST2IBUAN.js";
|
|
33
|
+
import "../chunks/chunk-3ZZSX5HN.js";
|
|
33
34
|
import "../chunks/chunk-AB35TJST.js";
|
|
34
35
|
import "../chunks/chunk-TAMCZHLW.js";
|
|
35
|
-
import "../chunks/chunk-
|
|
36
|
-
import "../chunks/chunk-4EMPBO7S.js";
|
|
36
|
+
import "../chunks/chunk-N6FECAXP.js";
|
|
37
37
|
import "../chunks/chunk-2CVHXFK7.js";
|
|
38
38
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
39
39
|
import "../chunks/chunk-NNODIW4U.js";
|
package/dist/layout/walkStrip.js
CHANGED
|
@@ -8,20 +8,20 @@ import {
|
|
|
8
8
|
walkMarksTree,
|
|
9
9
|
walkStripFrame,
|
|
10
10
|
walkStripLabelsTree
|
|
11
|
-
} from "../chunks/chunk-
|
|
12
|
-
import "../chunks/chunk-
|
|
13
|
-
import "../chunks/chunk-
|
|
14
|
-
import "../chunks/chunk-
|
|
11
|
+
} from "../chunks/chunk-MZ7QQRUJ.js";
|
|
12
|
+
import "../chunks/chunk-JFNPL4UT.js";
|
|
13
|
+
import "../chunks/chunk-VECR253P.js";
|
|
14
|
+
import "../chunks/chunk-VST5SR4C.js";
|
|
15
15
|
import "../chunks/chunk-UMNCCYBN.js";
|
|
16
|
-
import "../chunks/chunk-
|
|
17
|
-
import "../chunks/chunk-
|
|
18
|
-
import "../chunks/chunk-
|
|
16
|
+
import "../chunks/chunk-PBENCR5L.js";
|
|
17
|
+
import "../chunks/chunk-WFB5TXRA.js";
|
|
18
|
+
import "../chunks/chunk-E7FWQQHP.js";
|
|
19
19
|
import "../chunks/chunk-ES2N6V56.js";
|
|
20
|
-
import "../chunks/chunk-
|
|
20
|
+
import "../chunks/chunk-ST2IBUAN.js";
|
|
21
|
+
import "../chunks/chunk-3ZZSX5HN.js";
|
|
21
22
|
import "../chunks/chunk-AB35TJST.js";
|
|
22
23
|
import "../chunks/chunk-TAMCZHLW.js";
|
|
23
|
-
import "../chunks/chunk-
|
|
24
|
-
import "../chunks/chunk-4EMPBO7S.js";
|
|
24
|
+
import "../chunks/chunk-N6FECAXP.js";
|
|
25
25
|
import "../chunks/chunk-2CVHXFK7.js";
|
|
26
26
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
27
27
|
import "../chunks/chunk-NNODIW4U.js";
|