@jbrowse/bandage-core 6.1.0 → 6.1.1

package/dist/chunks/{chunk-6UACM7VU.js → chunk-7UIMNBJT.js}

@@ -15,7 +15,7 @@ import {
   routeNodes,
   takeRoutes,
   withDeletionRoutes
-} from "./chunk-C6USNTTP.js";
+} from "./chunk-STNG3Y5X.js";
 import {
   anchorGraph
 } from "./chunk-ST2IBUAN.js";

package/dist/chunks/{chunk-KKU6JRJC.js → chunk-OSDI57GY.js}

@@ -24,10 +24,10 @@ import {
 } from "./chunk-3S3YVOJ7.js";
 import {
   version
-} from "./chunk-LPFN4POU.js";
+} from "./chunk-XH43CLO2.js";
 import {
   axisScaleOf
-} from "./chunk-AMHZMY6E.js";
+} from "./chunk-XJWN753L.js";
 import {
   facetLifts,
   walkLift
@@ -43,7 +43,7 @@ import {
   FIT_PADDING,
   drawingBounds,
   fitTransform
-} from "./chunk-6UACM7VU.js";
+} from "./chunk-7UIMNBJT.js";
 import {
   buildGeometry,
   computeReferenceRamp

package/dist/chunks/{chunk-C6USNTTP.js → chunk-STNG3Y5X.js}

@@ -40,11 +40,32 @@ function withDeletionRoutes(graph, deletions, dropped = /* @__PURE__ */ new Set(
   };
 }
 function closableDeletions(graph, deletions) {
-  const lengths = new Map(graph.nodes.map((n) => [n.id, n.length]));
+  const parent = /* @__PURE__ */ new Map();
+  const root = (id) => {
+    let r = id;
+    while (parent.has(r)) {
+      r = parent.get(r);
+    }
+    if (r !== id) {
+      parent.set(id, r);
+    }
+    return r;
+  };
+  const join = (a, b) => {
+    const [ra, rb] = [root(a), root(b)];
+    if (ra !== rb) {
+      parent.set(ra, rb);
+    }
+    return ra !== rb;
+  };
+  const candidates = new Set(deletions.map((d) => d.edgeIndex));
+  graph.edges.forEach((e, ei) => {
+    if (!candidates.has(ei)) {
+      join(e.from, e.to);
+    }
+  });
   return new Set(
-    deletions.filter(
-      (d) => d.bypassed.reduce((sum, id) => sum + (lengths.get(id) ?? 0), 0) >= d.bp
-    ).map((d) => d.edgeIndex)
+    deletions.filter((d) => !join(d.from, d.to)).map((d) => d.edgeIndex)
   );
 }
 function routeNodes(graph, deletions, routes, drawnOf, opts) {

package/dist/chunks/{chunk-LPFN4POU.js → chunk-XH43CLO2.js}

@@ -1,5 +1,5 @@
 // src/version.ts
-var version = "6.1.0";
+var version = "6.1.1";
 
 export {
   version

package/dist/chunks/{chunk-AMHZMY6E.js → chunk-XJWN753L.js}

@@ -1,6 +1,6 @@
 import {
   clampZoom
-} from "./chunk-6UACM7VU.js";
+} from "./chunk-7UIMNBJT.js";
 
 // src/viewport.ts
 function axisScaleOf(scale, pixelRows) {

package/dist/cli/figure.js

@@ -21,7 +21,7 @@ import {
 } from "../chunks/chunk-7XHHVYG7.js";
 import {
   figureSvg
-} from "../chunks/chunk-KKU6JRJC.js";
+} from "../chunks/chunk-OSDI57GY.js";
 import "../chunks/chunk-47DYCZOK.js";
 import "../chunks/chunk-V5BPIOLS.js";
 import {
@@ -32,21 +32,21 @@ import "../chunks/chunk-CH3DLBUT.js";
 import "../chunks/chunk-4BYTEJGW.js";
 import "../chunks/chunk-BUBZ32IC.js";
 import "../chunks/chunk-3S3YVOJ7.js";
-import "../chunks/chunk-LPFN4POU.js";
-import "../chunks/chunk-AMHZMY6E.js";
+import "../chunks/chunk-XH43CLO2.js";
+import "../chunks/chunk-XJWN753L.js";
 import "../chunks/chunk-ZKGM7VLA.js";
 import "../chunks/chunk-X4VVPLI5.js";
 import "../chunks/chunk-GOY6REMT.js";
 import {
   forceLayout,
   loadGraph
-} from "../chunks/chunk-6UACM7VU.js";
+} from "../chunks/chunk-7UIMNBJT.js";
 import "../chunks/chunk-PUG7LXDF.js";
 import "../chunks/chunk-IGVV37VI.js";
 import "../chunks/chunk-72N5DJHZ.js";
 import "../chunks/chunk-QYBZZI5H.js";
 import "../chunks/chunk-CDLPYR5O.js";
-import "../chunks/chunk-C6USNTTP.js";
+import "../chunks/chunk-STNG3Y5X.js";
 import "../chunks/chunk-ZHCDYSA5.js";
 import "../chunks/chunk-RX5CSWJW.js";
 import "../chunks/chunk-UMNCCYBN.js";

package/dist/figure.js

@@ -1,6 +1,6 @@
 import {
   figureSvg
-} from "./chunks/chunk-KKU6JRJC.js";
+} from "./chunks/chunk-OSDI57GY.js";
 import "./chunks/chunk-47DYCZOK.js";
 import "./chunks/chunk-V5BPIOLS.js";
 import "./chunks/chunk-PJESIRDU.js";
@@ -8,18 +8,18 @@ import "./chunks/chunk-CH3DLBUT.js";
 import "./chunks/chunk-4BYTEJGW.js";
 import "./chunks/chunk-BUBZ32IC.js";
 import "./chunks/chunk-3S3YVOJ7.js";
-import "./chunks/chunk-LPFN4POU.js";
-import "./chunks/chunk-AMHZMY6E.js";
+import "./chunks/chunk-XH43CLO2.js";
+import "./chunks/chunk-XJWN753L.js";
 import "./chunks/chunk-ZKGM7VLA.js";
 import "./chunks/chunk-X4VVPLI5.js";
 import "./chunks/chunk-GOY6REMT.js";
-import "./chunks/chunk-6UACM7VU.js";
+import "./chunks/chunk-7UIMNBJT.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-72N5DJHZ.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-CDLPYR5O.js";
-import "./chunks/chunk-C6USNTTP.js";
+import "./chunks/chunk-STNG3Y5X.js";
 import "./chunks/chunk-ZHCDYSA5.js";
 import "./chunks/chunk-RX5CSWJW.js";
 import "./chunks/chunk-UMNCCYBN.js";

package/dist/index.js

@@ -80,7 +80,7 @@ import {
 } from "./chunks/chunk-7XHHVYG7.js";
 import {
   figureSvg
-} from "./chunks/chunk-KKU6JRJC.js";
+} from "./chunks/chunk-OSDI57GY.js";
 import {
   svgCanvas
 } from "./chunks/chunk-47DYCZOK.js";
@@ -133,7 +133,7 @@ import {
 } from "./chunks/chunk-3S3YVOJ7.js";
 import {
   version
-} from "./chunks/chunk-LPFN4POU.js";
+} from "./chunks/chunk-XH43CLO2.js";
 import {
   axisScaleOf,
   contains,
@@ -141,7 +141,7 @@ import {
   screenToLayout,
   viewportOf,
   zoomAbout
-} from "./chunks/chunk-AMHZMY6E.js";
+} from "./chunks/chunk-XJWN753L.js";
 import {
   facetLifts,
   walkHighlight,
@@ -170,13 +170,13 @@ import {
   forceLayout,
   layoutExtent,
   loadGraph
-} from "./chunks/chunk-6UACM7VU.js";
+} from "./chunks/chunk-7UIMNBJT.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-72N5DJHZ.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-CDLPYR5O.js";
-import "./chunks/chunk-C6USNTTP.js";
+import "./chunks/chunk-STNG3Y5X.js";
 import {
   RAMP_GRADIENT_CSS,
   rampHue,

package/dist/layout/deletionRoutes.js

@@ -3,7 +3,7 @@ import {
   routeNodes,
   takeRoutes,
   withDeletionRoutes
-} from "../chunks/chunk-C6USNTTP.js";
+} from "../chunks/chunk-STNG3Y5X.js";
 export {
   closableDeletions,
   routeNodes,

package/dist/pipeline.js

@@ -9,13 +9,13 @@ import {
   forceLayout,
   layoutExtent,
   loadGraph
-} from "./chunks/chunk-6UACM7VU.js";
+} from "./chunks/chunk-7UIMNBJT.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-72N5DJHZ.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-CDLPYR5O.js";
-import "./chunks/chunk-C6USNTTP.js";
+import "./chunks/chunk-STNG3Y5X.js";
 import "./chunks/chunk-ST2IBUAN.js";
 import "./chunks/chunk-ES2N6V56.js";
 import "./chunks/chunk-TAMCZHLW.js";

package/dist/types/version.d.ts

@@ -1 +1 @@
-export declare const version = "6.1.0";
+export declare const version = "6.1.1";

package/dist/version.js

@@ -1,6 +1,6 @@
 import {
   version
-} from "./chunks/chunk-LPFN4POU.js";
+} from "./chunks/chunk-XH43CLO2.js";
 export {
   version
 };

package/dist/viewport.js

@@ -5,14 +5,14 @@ import {
   screenToLayout,
   viewportOf,
   zoomAbout
-} from "./chunks/chunk-AMHZMY6E.js";
-import "./chunks/chunk-6UACM7VU.js";
+} from "./chunks/chunk-XJWN753L.js";
+import "./chunks/chunk-7UIMNBJT.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-72N5DJHZ.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-CDLPYR5O.js";
-import "./chunks/chunk-C6USNTTP.js";
+import "./chunks/chunk-STNG3Y5X.js";
 import "./chunks/chunk-ST2IBUAN.js";
 import "./chunks/chunk-ES2N6V56.js";
 import "./chunks/chunk-TAMCZHLW.js";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/bandage-core",
-  "version": "6.1.0",
+  "version": "6.1.1",
   "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
   "license": "GPL-3.0-or-later",
   "repository": {