@jbrowse/bandage-core 6.0.2 → 6.0.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/bubbles/bubbleHalos.js +2 -2
- package/dist/chunks/{chunk-3PLYZLYV.js → chunk-2CVHXFK7.js} +18 -1
- package/dist/chunks/chunk-4BYTEJGW.js +44 -0
- package/dist/chunks/{chunk-X32PABB7.js → chunk-4EMPBO7S.js} +1 -1
- package/dist/chunks/{chunk-SV27AJCC.js → chunk-BUBZ32IC.js} +2 -2
- package/dist/chunks/{chunk-D3M7SBKL.js → chunk-CH3DLBUT.js} +22 -15
- package/dist/chunks/{chunk-Q3KCTA4N.js → chunk-CS3E4ETM.js} +1 -1
- package/dist/chunks/{chunk-57ZIXHZA.js → chunk-CTSBC2O6.js} +1 -1
- package/dist/chunks/{chunk-HB6PDCOU.js → chunk-DKOB2OPC.js} +2 -2
- package/dist/chunks/{chunk-CZ54VG2H.js → chunk-FZCOVJAL.js} +15 -15
- package/dist/chunks/{chunk-AE3UQZY3.js → chunk-GOY6REMT.js} +1 -1
- package/dist/chunks/{chunk-VKB57ZYE.js → chunk-IO2PCPZI.js} +2 -2
- package/dist/chunks/{chunk-3C2LGJKY.js → chunk-ISEI2FH3.js} +1 -1
- package/dist/chunks/{chunk-L5RYUPZI.js → chunk-MQJUG2D2.js} +1 -1
- package/dist/chunks/{chunk-LVZZH2NI.js → chunk-MREQ7GIA.js} +2 -2
- package/dist/chunks/{chunk-HCANBJDD.js → chunk-N62KBLFC.js} +3 -3
- package/dist/chunks/{chunk-QCYM44UL.js → chunk-PJESIRDU.js} +2 -2
- package/dist/chunks/{chunk-KCW7L3NV.js → chunk-QFBZQJFK.js} +1 -1
- package/dist/chunks/{chunk-P7B3GDAY.js → chunk-R6ZUK4Y3.js} +1 -1
- package/dist/chunks/{chunk-3WHKR5TY.js → chunk-RX5CSWJW.js} +7 -6
- package/dist/chunks/{chunk-HIJVRRYE.js → chunk-SMQ545MU.js} +4 -2
- package/dist/chunks/{chunk-527AI7CP.js → chunk-T43W7NKK.js} +1 -1
- package/dist/chunks/{chunk-SDGM243E.js → chunk-TAMCZHLW.js} +1 -1
- package/dist/chunks/chunk-UMNCCYBN.js +50 -0
- package/dist/chunks/{chunk-MHGHYHTL.js → chunk-V5BPIOLS.js} +1 -1
- package/dist/chunks/{chunk-IMW3AK27.js → chunk-X4VVPLI5.js} +4 -2
- package/dist/chunks/{chunk-7CHJKABZ.js → chunk-X5L37W4J.js} +1 -1
- package/dist/chunks/{chunk-6YRRNX2P.js → chunk-Y3IOTZJA.js} +2 -2
- package/dist/chunks/{chunk-BJV2W4KZ.js → chunk-YMSSF2RK.js} +2 -2
- package/dist/chunks/{chunk-5QT6NPSO.js → chunk-ZHCDYSA5.js} +1 -1
- package/dist/chunks/{chunk-6Q6HFBJT.js → chunk-ZKGM7VLA.js} +1 -1
- package/dist/chunks/{chunk-YJQ7CT7F.js → chunk-ZZA2AFB4.js} +4 -2
- package/dist/cli/figure.js +26 -25
- package/dist/deletionEdges.js +2 -2
- package/dist/figure.js +24 -23
- package/dist/genes/genePins.js +3 -3
- package/dist/graphLabels.js +4 -4
- package/dist/index.js +38 -38
- package/dist/labelLayout.js +8 -8
- package/dist/layout/mergeRuns.js +2 -2
- package/dist/layout/tubeMapLayout.js +6 -6
- package/dist/layout/walkRowDraw.js +10 -10
- package/dist/layout/walkStrip.js +11 -11
- package/dist/layoutModes.js +7 -7
- package/dist/pathColors.js +5 -5
- package/dist/pipeline.js +4 -4
- package/dist/referenceRampCss.js +9 -9
- package/dist/referenceStrip.js +9 -9
- package/dist/renderer/Canvas2DRenderer.js +3 -2
- package/dist/renderer/GeometryBuilder.js +8 -8
- package/dist/renderer/canvas.js +12 -0
- package/dist/renderer/colorBits.js +17 -3
- package/dist/tubeMap/axis.js +5 -5
- package/dist/tubeMap/coarsen.js +6 -6
- package/dist/tubeMap/genes.js +6 -6
- package/dist/tubeMap/nodeColors.js +9 -9
- package/dist/types/index.d.ts +1 -1
- package/dist/types/pansn.d.ts +7 -4
- package/dist/types/renderer/Canvas2DRenderer.d.ts +6 -2
- package/dist/types/renderer/canvas.d.ts +4 -0
- package/dist/types/renderer/colorBits.d.ts +7 -0
- package/dist/types/version.d.ts +1 -1
- package/dist/util/SpatialIndex.js +4 -4
- package/dist/util/edgeCurves.js +3 -3
- package/dist/util/geometry.js +1 -1
- package/dist/util/hitDetection.js +5 -5
- package/dist/version.js +1 -1
- package/dist/viewport.js +5 -5
- package/dist/walkEncoding.js +9 -9
- package/dist/walkHighlight.js +10 -10
- package/dist/walkKey.js +5 -5
- package/package.json +2 -4
- package/dist/chunks/chunk-MNUSQCLG.js +0 -29
package/dist/referenceRampCss.js
CHANGED
|
@@ -4,19 +4,19 @@ import {
|
|
|
4
4
|
rampHue,
|
|
5
5
|
rampHueCss,
|
|
6
6
|
rampStops
|
|
7
|
-
} from "./chunks/chunk-
|
|
8
|
-
import "./chunks/chunk-
|
|
9
|
-
import "./chunks/chunk-
|
|
10
|
-
import "./chunks/chunk-
|
|
11
|
-
import "./chunks/chunk-
|
|
7
|
+
} from "./chunks/chunk-ZHCDYSA5.js";
|
|
8
|
+
import "./chunks/chunk-RX5CSWJW.js";
|
|
9
|
+
import "./chunks/chunk-UMNCCYBN.js";
|
|
10
|
+
import "./chunks/chunk-Y3IOTZJA.js";
|
|
11
|
+
import "./chunks/chunk-X5L37W4J.js";
|
|
12
12
|
import "./chunks/chunk-ST2IBUAN.js";
|
|
13
13
|
import "./chunks/chunk-ES2N6V56.js";
|
|
14
|
-
import "./chunks/chunk-
|
|
14
|
+
import "./chunks/chunk-N62KBLFC.js";
|
|
15
15
|
import "./chunks/chunk-AB35TJST.js";
|
|
16
|
-
import "./chunks/chunk-
|
|
16
|
+
import "./chunks/chunk-TAMCZHLW.js";
|
|
17
17
|
import "./chunks/chunk-PBENCR5L.js";
|
|
18
|
-
import "./chunks/chunk-
|
|
19
|
-
import "./chunks/chunk-
|
|
18
|
+
import "./chunks/chunk-4EMPBO7S.js";
|
|
19
|
+
import "./chunks/chunk-2CVHXFK7.js";
|
|
20
20
|
import "./chunks/chunk-CPMHA4W5.js";
|
|
21
21
|
import "./chunks/chunk-BPLIXMH7.js";
|
|
22
22
|
import "./chunks/chunk-FYQWPEEY.js";
|
package/dist/referenceStrip.js
CHANGED
|
@@ -7,19 +7,19 @@ import {
|
|
|
7
7
|
stripBlockAt,
|
|
8
8
|
stripOverhang,
|
|
9
9
|
stripPixels
|
|
10
|
-
} from "./chunks/chunk-
|
|
11
|
-
import "./chunks/chunk-
|
|
12
|
-
import "./chunks/chunk-
|
|
13
|
-
import "./chunks/chunk-
|
|
14
|
-
import "./chunks/chunk-
|
|
10
|
+
} from "./chunks/chunk-SMQ545MU.js";
|
|
11
|
+
import "./chunks/chunk-RX5CSWJW.js";
|
|
12
|
+
import "./chunks/chunk-UMNCCYBN.js";
|
|
13
|
+
import "./chunks/chunk-Y3IOTZJA.js";
|
|
14
|
+
import "./chunks/chunk-X5L37W4J.js";
|
|
15
15
|
import "./chunks/chunk-ST2IBUAN.js";
|
|
16
16
|
import "./chunks/chunk-ES2N6V56.js";
|
|
17
|
-
import "./chunks/chunk-
|
|
17
|
+
import "./chunks/chunk-N62KBLFC.js";
|
|
18
18
|
import "./chunks/chunk-AB35TJST.js";
|
|
19
|
-
import "./chunks/chunk-
|
|
19
|
+
import "./chunks/chunk-TAMCZHLW.js";
|
|
20
20
|
import "./chunks/chunk-PBENCR5L.js";
|
|
21
|
-
import "./chunks/chunk-
|
|
22
|
-
import "./chunks/chunk-
|
|
21
|
+
import "./chunks/chunk-4EMPBO7S.js";
|
|
22
|
+
import "./chunks/chunk-2CVHXFK7.js";
|
|
23
23
|
import "./chunks/chunk-CPMHA4W5.js";
|
|
24
24
|
import "./chunks/chunk-BPLIXMH7.js";
|
|
25
25
|
import "./chunks/chunk-FYQWPEEY.js";
|
|
@@ -1,8 +1,9 @@
|
|
|
1
1
|
import {
|
|
2
2
|
Canvas2DRenderer,
|
|
3
3
|
arrowheadOutline
|
|
4
|
-
} from "../chunks/chunk-
|
|
5
|
-
import "../chunks/chunk-
|
|
4
|
+
} from "../chunks/chunk-CH3DLBUT.js";
|
|
5
|
+
import "../chunks/chunk-4BYTEJGW.js";
|
|
6
|
+
import "../chunks/chunk-UMNCCYBN.js";
|
|
6
7
|
export {
|
|
7
8
|
Canvas2DRenderer,
|
|
8
9
|
arrowheadOutline
|
|
@@ -11,18 +11,18 @@ import {
|
|
|
11
11
|
endTangent,
|
|
12
12
|
getNodeColor,
|
|
13
13
|
hslToRgb
|
|
14
|
-
} from "../chunks/chunk-
|
|
15
|
-
import "../chunks/chunk-
|
|
16
|
-
import "../chunks/chunk-
|
|
17
|
-
import "../chunks/chunk-
|
|
14
|
+
} from "../chunks/chunk-RX5CSWJW.js";
|
|
15
|
+
import "../chunks/chunk-UMNCCYBN.js";
|
|
16
|
+
import "../chunks/chunk-Y3IOTZJA.js";
|
|
17
|
+
import "../chunks/chunk-X5L37W4J.js";
|
|
18
18
|
import "../chunks/chunk-ST2IBUAN.js";
|
|
19
19
|
import "../chunks/chunk-ES2N6V56.js";
|
|
20
|
-
import "../chunks/chunk-
|
|
20
|
+
import "../chunks/chunk-N62KBLFC.js";
|
|
21
21
|
import "../chunks/chunk-AB35TJST.js";
|
|
22
|
-
import "../chunks/chunk-
|
|
22
|
+
import "../chunks/chunk-TAMCZHLW.js";
|
|
23
23
|
import "../chunks/chunk-PBENCR5L.js";
|
|
24
|
-
import "../chunks/chunk-
|
|
25
|
-
import "../chunks/chunk-
|
|
24
|
+
import "../chunks/chunk-4EMPBO7S.js";
|
|
25
|
+
import "../chunks/chunk-2CVHXFK7.js";
|
|
26
26
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
27
27
|
import "../chunks/chunk-BPLIXMH7.js";
|
|
28
28
|
import "../chunks/chunk-FYQWPEEY.js";
|
|
@@ -1,8 +1,22 @@
|
|
|
1
1
|
import {
|
|
2
|
+
abgrAlpha,
|
|
3
|
+
abgrBlue,
|
|
4
|
+
abgrGreen,
|
|
5
|
+
abgrRed,
|
|
6
|
+
abgrToCssRgba,
|
|
2
7
|
brightenAbgr,
|
|
3
|
-
fadeAbgr
|
|
4
|
-
|
|
8
|
+
fadeAbgr,
|
|
9
|
+
normalizedRgbToCssRgba,
|
|
10
|
+
packAbgr
|
|
11
|
+
} from "../chunks/chunk-UMNCCYBN.js";
|
|
5
12
|
export {
|
|
13
|
+
abgrAlpha,
|
|
14
|
+
abgrBlue,
|
|
15
|
+
abgrGreen,
|
|
16
|
+
abgrRed,
|
|
17
|
+
abgrToCssRgba,
|
|
6
18
|
brightenAbgr,
|
|
7
|
-
fadeAbgr
|
|
19
|
+
fadeAbgr,
|
|
20
|
+
normalizedRgbToCssRgba,
|
|
21
|
+
packAbgr
|
|
8
22
|
};
|
package/dist/tubeMap/axis.js
CHANGED
|
@@ -6,12 +6,12 @@ import {
|
|
|
6
6
|
rulerMarks,
|
|
7
7
|
tubeSpan,
|
|
8
8
|
tubeX
|
|
9
|
-
} from "../chunks/chunk-
|
|
10
|
-
import "../chunks/chunk-
|
|
9
|
+
} from "../chunks/chunk-CS3E4ETM.js";
|
|
10
|
+
import "../chunks/chunk-N62KBLFC.js";
|
|
11
11
|
import "../chunks/chunk-AB35TJST.js";
|
|
12
|
-
import "../chunks/chunk-
|
|
13
|
-
import "../chunks/chunk-
|
|
14
|
-
import "../chunks/chunk-
|
|
12
|
+
import "../chunks/chunk-TAMCZHLW.js";
|
|
13
|
+
import "../chunks/chunk-4EMPBO7S.js";
|
|
14
|
+
import "../chunks/chunk-2CVHXFK7.js";
|
|
15
15
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
16
16
|
import "../chunks/chunk-FYQWPEEY.js";
|
|
17
17
|
export {
|
package/dist/tubeMap/coarsen.js
CHANGED
|
@@ -1,19 +1,19 @@
|
|
|
1
1
|
import {
|
|
2
2
|
visitStrands
|
|
3
|
-
} from "../chunks/chunk-
|
|
3
|
+
} from "../chunks/chunk-R6ZUK4Y3.js";
|
|
4
4
|
import {
|
|
5
5
|
canonicalStrand
|
|
6
6
|
} from "../chunks/chunk-TEDQJPMI.js";
|
|
7
7
|
import "../chunks/chunk-C44YRP5F.js";
|
|
8
|
-
import "../chunks/chunk-
|
|
8
|
+
import "../chunks/chunk-X5L37W4J.js";
|
|
9
9
|
import {
|
|
10
10
|
pathOrigin
|
|
11
11
|
} from "../chunks/chunk-ST2IBUAN.js";
|
|
12
|
-
import "../chunks/chunk-
|
|
12
|
+
import "../chunks/chunk-N62KBLFC.js";
|
|
13
13
|
import "../chunks/chunk-AB35TJST.js";
|
|
14
|
-
import "../chunks/chunk-
|
|
15
|
-
import "../chunks/chunk-
|
|
16
|
-
import "../chunks/chunk-
|
|
14
|
+
import "../chunks/chunk-TAMCZHLW.js";
|
|
15
|
+
import "../chunks/chunk-4EMPBO7S.js";
|
|
16
|
+
import "../chunks/chunk-2CVHXFK7.js";
|
|
17
17
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
18
18
|
import "../chunks/chunk-BPLIXMH7.js";
|
|
19
19
|
import {
|
package/dist/tubeMap/genes.js
CHANGED
|
@@ -3,13 +3,13 @@ import {
|
|
|
3
3
|
drawTubeMapGenes,
|
|
4
4
|
tubeMapGeneRows,
|
|
5
5
|
tubeMapGenes
|
|
6
|
-
} from "../chunks/chunk-
|
|
7
|
-
import "../chunks/chunk-
|
|
8
|
-
import "../chunks/chunk-
|
|
6
|
+
} from "../chunks/chunk-CTSBC2O6.js";
|
|
7
|
+
import "../chunks/chunk-CS3E4ETM.js";
|
|
8
|
+
import "../chunks/chunk-N62KBLFC.js";
|
|
9
9
|
import "../chunks/chunk-AB35TJST.js";
|
|
10
|
-
import "../chunks/chunk-
|
|
11
|
-
import "../chunks/chunk-
|
|
12
|
-
import "../chunks/chunk-
|
|
10
|
+
import "../chunks/chunk-TAMCZHLW.js";
|
|
11
|
+
import "../chunks/chunk-4EMPBO7S.js";
|
|
12
|
+
import "../chunks/chunk-2CVHXFK7.js";
|
|
13
13
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
14
14
|
import "../chunks/chunk-FYQWPEEY.js";
|
|
15
15
|
export {
|
|
@@ -1,18 +1,18 @@
|
|
|
1
1
|
import {
|
|
2
2
|
tubeMapNodeColors
|
|
3
|
-
} from "../chunks/chunk-
|
|
4
|
-
import "../chunks/chunk-
|
|
5
|
-
import "../chunks/chunk-
|
|
6
|
-
import "../chunks/chunk-
|
|
7
|
-
import "../chunks/chunk-
|
|
3
|
+
} from "../chunks/chunk-ZZA2AFB4.js";
|
|
4
|
+
import "../chunks/chunk-RX5CSWJW.js";
|
|
5
|
+
import "../chunks/chunk-UMNCCYBN.js";
|
|
6
|
+
import "../chunks/chunk-Y3IOTZJA.js";
|
|
7
|
+
import "../chunks/chunk-X5L37W4J.js";
|
|
8
8
|
import "../chunks/chunk-ST2IBUAN.js";
|
|
9
9
|
import "../chunks/chunk-ES2N6V56.js";
|
|
10
|
-
import "../chunks/chunk-
|
|
10
|
+
import "../chunks/chunk-N62KBLFC.js";
|
|
11
11
|
import "../chunks/chunk-AB35TJST.js";
|
|
12
|
-
import "../chunks/chunk-
|
|
12
|
+
import "../chunks/chunk-TAMCZHLW.js";
|
|
13
13
|
import "../chunks/chunk-PBENCR5L.js";
|
|
14
|
-
import "../chunks/chunk-
|
|
15
|
-
import "../chunks/chunk-
|
|
14
|
+
import "../chunks/chunk-4EMPBO7S.js";
|
|
15
|
+
import "../chunks/chunk-2CVHXFK7.js";
|
|
16
16
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
17
17
|
import "../chunks/chunk-BPLIXMH7.js";
|
|
18
18
|
import "../chunks/chunk-FYQWPEEY.js";
|
package/dist/types/index.d.ts
CHANGED
|
@@ -10,7 +10,7 @@ export { BUBBLE_SPREADS } from './bubbleSpreads.js';
|
|
|
10
10
|
export type { BubbleSpread } from './bubbleSpreads.js';
|
|
11
11
|
export { REFERENCE_RAMP_MAX_HUE, buildGeometry, computeReferenceRamp, } from './renderer/GeometryBuilder.js';
|
|
12
12
|
export { Canvas2DRenderer } from './renderer/Canvas2DRenderer.js';
|
|
13
|
-
export { getDpr } from '
|
|
13
|
+
export { getDpr } from './renderer/canvas.js';
|
|
14
14
|
export type { Renderer } from './renderer/types.js';
|
|
15
15
|
export { findHoveredEdge, findHoveredNode } from './util/hitDetection.js';
|
|
16
16
|
export type { NodeInk } from './util/hitDetection.js';
|
package/dist/types/pansn.d.ts
CHANGED
|
@@ -1,9 +1,12 @@
|
|
|
1
|
-
|
|
1
|
+
interface ConfAdapter {
|
|
2
|
+
getConf(slot: any): unknown;
|
|
3
|
+
}
|
|
2
4
|
export declare function panSNSample(refName: string): string;
|
|
3
5
|
export declare function isGenericSample(sample: string): boolean;
|
|
4
6
|
export declare function panSNHaplotype(refName: string): string | undefined;
|
|
5
7
|
export declare function panSNContig(refName: string): string;
|
|
6
8
|
export declare function panSNMatchesPrefix(refName: string, prefix: string | undefined): boolean;
|
|
7
|
-
export declare function resolvePanSNPrefix(adapter:
|
|
8
|
-
export declare function resolvePanSNPrefix(adapter:
|
|
9
|
-
export declare function assemblyByPanSNPrefix(adapter:
|
|
9
|
+
export declare function resolvePanSNPrefix(adapter: ConfAdapter, name: string): string;
|
|
10
|
+
export declare function resolvePanSNPrefix(adapter: ConfAdapter, name: string | undefined): string | undefined;
|
|
11
|
+
export declare function assemblyByPanSNPrefix(adapter: ConfAdapter): Record<string, string>;
|
|
12
|
+
export {};
|
|
@@ -1,11 +1,15 @@
|
|
|
1
|
-
import { Canvas2DRenderingBackendBase } from '@jbrowse/render-core/renderingBackendBase';
|
|
2
1
|
import type { Arrowhead, RenderBatch, Renderer, TransformUniform } from './types.js';
|
|
3
|
-
export declare class Canvas2DRenderer
|
|
2
|
+
export declare class Canvas2DRenderer implements Renderer {
|
|
3
|
+
readonly canvas: HTMLCanvasElement;
|
|
4
|
+
readonly ctx: CanvasRenderingContext2D;
|
|
4
5
|
private transform;
|
|
5
6
|
private batch;
|
|
6
7
|
private nodeHighlights;
|
|
7
8
|
private highlightedEdge;
|
|
8
9
|
private highlightFactor;
|
|
10
|
+
constructor(canvas: HTMLCanvasElement);
|
|
11
|
+
setErrorHandler(_handler: (error: Error) => void): void;
|
|
12
|
+
releaseOffscreenTargets(): void;
|
|
9
13
|
resize(width: number, height: number): void;
|
|
10
14
|
uploadGeometry(batch: RenderBatch): void;
|
|
11
15
|
setNodeHighlights(factors: ReadonlyMap<string, number>): void;
|
|
@@ -1,2 +1,9 @@
|
|
|
1
|
+
export declare function packAbgr(r: number, g: number, b: number, a: number): number;
|
|
2
|
+
export declare function abgrRed(c: number): number;
|
|
3
|
+
export declare function abgrGreen(c: number): number;
|
|
4
|
+
export declare function abgrBlue(c: number): number;
|
|
5
|
+
export declare function abgrAlpha(c: number): number;
|
|
6
|
+
export declare function abgrToCssRgba(c: number): string;
|
|
7
|
+
export declare function normalizedRgbToCssRgba(c: readonly [number, number, number], alpha: number): string;
|
|
1
8
|
export declare function fadeAbgr(c: number, alpha: number): number;
|
|
2
9
|
export declare function brightenAbgr(c: number, factor: number): number;
|
package/dist/types/version.d.ts
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
export declare const version = "6.0.
|
|
1
|
+
export declare const version = "6.0.4";
|
|
@@ -1,10 +1,10 @@
|
|
|
1
1
|
import {
|
|
2
2
|
EdgeSpatialIndex,
|
|
3
3
|
SpatialIndex
|
|
4
|
-
} from "../chunks/chunk-
|
|
5
|
-
import "../chunks/chunk-
|
|
6
|
-
import "../chunks/chunk-
|
|
7
|
-
import "../chunks/chunk-
|
|
4
|
+
} from "../chunks/chunk-MREQ7GIA.js";
|
|
5
|
+
import "../chunks/chunk-Y3IOTZJA.js";
|
|
6
|
+
import "../chunks/chunk-4EMPBO7S.js";
|
|
7
|
+
import "../chunks/chunk-2CVHXFK7.js";
|
|
8
8
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
9
9
|
import "../chunks/chunk-FYQWPEEY.js";
|
|
10
10
|
export {
|
package/dist/util/edgeCurves.js
CHANGED
|
@@ -1,8 +1,8 @@
|
|
|
1
1
|
import {
|
|
2
2
|
baseEdgeCurves
|
|
3
|
-
} from "../chunks/chunk-
|
|
4
|
-
import "../chunks/chunk-
|
|
5
|
-
import "../chunks/chunk-
|
|
3
|
+
} from "../chunks/chunk-Y3IOTZJA.js";
|
|
4
|
+
import "../chunks/chunk-4EMPBO7S.js";
|
|
5
|
+
import "../chunks/chunk-2CVHXFK7.js";
|
|
6
6
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
7
7
|
import "../chunks/chunk-FYQWPEEY.js";
|
|
8
8
|
export {
|
package/dist/util/geometry.js
CHANGED
|
@@ -4,11 +4,11 @@ import {
|
|
|
4
4
|
findHoveredEdge,
|
|
5
5
|
findHoveredNode,
|
|
6
6
|
nodesUnderBox
|
|
7
|
-
} from "../chunks/chunk-
|
|
8
|
-
import "../chunks/chunk-
|
|
9
|
-
import "../chunks/chunk-
|
|
10
|
-
import "../chunks/chunk-
|
|
11
|
-
import "../chunks/chunk-
|
|
7
|
+
} from "../chunks/chunk-YMSSF2RK.js";
|
|
8
|
+
import "../chunks/chunk-MREQ7GIA.js";
|
|
9
|
+
import "../chunks/chunk-Y3IOTZJA.js";
|
|
10
|
+
import "../chunks/chunk-4EMPBO7S.js";
|
|
11
|
+
import "../chunks/chunk-2CVHXFK7.js";
|
|
12
12
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
13
13
|
import "../chunks/chunk-FYQWPEEY.js";
|
|
14
14
|
export {
|
package/dist/version.js
CHANGED
package/dist/viewport.js
CHANGED
|
@@ -5,8 +5,8 @@ import {
|
|
|
5
5
|
screenToLayout,
|
|
6
6
|
viewportOf,
|
|
7
7
|
zoomAbout
|
|
8
|
-
} from "./chunks/chunk-
|
|
9
|
-
import "./chunks/chunk-
|
|
8
|
+
} from "./chunks/chunk-MQJUG2D2.js";
|
|
9
|
+
import "./chunks/chunk-IO2PCPZI.js";
|
|
10
10
|
import "./chunks/chunk-PUG7LXDF.js";
|
|
11
11
|
import "./chunks/chunk-IGVV37VI.js";
|
|
12
12
|
import "./chunks/chunk-72N5DJHZ.js";
|
|
@@ -15,11 +15,11 @@ import "./chunks/chunk-CDLPYR5O.js";
|
|
|
15
15
|
import "./chunks/chunk-MI35EUIE.js";
|
|
16
16
|
import "./chunks/chunk-ST2IBUAN.js";
|
|
17
17
|
import "./chunks/chunk-ES2N6V56.js";
|
|
18
|
-
import "./chunks/chunk-
|
|
18
|
+
import "./chunks/chunk-TAMCZHLW.js";
|
|
19
19
|
import "./chunks/chunk-UVBGRJQX.js";
|
|
20
20
|
import "./chunks/chunk-6JEWNXCQ.js";
|
|
21
|
-
import "./chunks/chunk-
|
|
22
|
-
import "./chunks/chunk-
|
|
21
|
+
import "./chunks/chunk-4EMPBO7S.js";
|
|
22
|
+
import "./chunks/chunk-2CVHXFK7.js";
|
|
23
23
|
import "./chunks/chunk-CPMHA4W5.js";
|
|
24
24
|
import "./chunks/chunk-BPLIXMH7.js";
|
|
25
25
|
import "./chunks/chunk-FYQWPEEY.js";
|
package/dist/walkEncoding.js
CHANGED
|
@@ -9,19 +9,19 @@ import {
|
|
|
9
9
|
schemeColor,
|
|
10
10
|
schemeCss,
|
|
11
11
|
schemeRgb
|
|
12
|
-
} from "./chunks/chunk-
|
|
13
|
-
import "./chunks/chunk-
|
|
14
|
-
import "./chunks/chunk-
|
|
15
|
-
import "./chunks/chunk-
|
|
16
|
-
import "./chunks/chunk-
|
|
12
|
+
} from "./chunks/chunk-X4VVPLI5.js";
|
|
13
|
+
import "./chunks/chunk-RX5CSWJW.js";
|
|
14
|
+
import "./chunks/chunk-UMNCCYBN.js";
|
|
15
|
+
import "./chunks/chunk-Y3IOTZJA.js";
|
|
16
|
+
import "./chunks/chunk-X5L37W4J.js";
|
|
17
17
|
import "./chunks/chunk-ST2IBUAN.js";
|
|
18
18
|
import "./chunks/chunk-ES2N6V56.js";
|
|
19
|
-
import "./chunks/chunk-
|
|
19
|
+
import "./chunks/chunk-N62KBLFC.js";
|
|
20
20
|
import "./chunks/chunk-AB35TJST.js";
|
|
21
|
-
import "./chunks/chunk-
|
|
21
|
+
import "./chunks/chunk-TAMCZHLW.js";
|
|
22
22
|
import "./chunks/chunk-PBENCR5L.js";
|
|
23
|
-
import "./chunks/chunk-
|
|
24
|
-
import "./chunks/chunk-
|
|
23
|
+
import "./chunks/chunk-4EMPBO7S.js";
|
|
24
|
+
import "./chunks/chunk-2CVHXFK7.js";
|
|
25
25
|
import "./chunks/chunk-CPMHA4W5.js";
|
|
26
26
|
import "./chunks/chunk-BPLIXMH7.js";
|
|
27
27
|
import "./chunks/chunk-FYQWPEEY.js";
|
package/dist/walkHighlight.js
CHANGED
|
@@ -2,20 +2,20 @@ import {
|
|
|
2
2
|
facetLifts,
|
|
3
3
|
walkHighlight,
|
|
4
4
|
walkLift
|
|
5
|
-
} from "./chunks/chunk-
|
|
6
|
-
import "./chunks/chunk-
|
|
7
|
-
import "./chunks/chunk-
|
|
8
|
-
import "./chunks/chunk-
|
|
9
|
-
import "./chunks/chunk-
|
|
10
|
-
import "./chunks/chunk-
|
|
5
|
+
} from "./chunks/chunk-ZKGM7VLA.js";
|
|
6
|
+
import "./chunks/chunk-X4VVPLI5.js";
|
|
7
|
+
import "./chunks/chunk-RX5CSWJW.js";
|
|
8
|
+
import "./chunks/chunk-UMNCCYBN.js";
|
|
9
|
+
import "./chunks/chunk-Y3IOTZJA.js";
|
|
10
|
+
import "./chunks/chunk-X5L37W4J.js";
|
|
11
11
|
import "./chunks/chunk-ST2IBUAN.js";
|
|
12
12
|
import "./chunks/chunk-ES2N6V56.js";
|
|
13
|
-
import "./chunks/chunk-
|
|
13
|
+
import "./chunks/chunk-N62KBLFC.js";
|
|
14
14
|
import "./chunks/chunk-AB35TJST.js";
|
|
15
|
-
import "./chunks/chunk-
|
|
15
|
+
import "./chunks/chunk-TAMCZHLW.js";
|
|
16
16
|
import "./chunks/chunk-PBENCR5L.js";
|
|
17
|
-
import "./chunks/chunk-
|
|
18
|
-
import "./chunks/chunk-
|
|
17
|
+
import "./chunks/chunk-4EMPBO7S.js";
|
|
18
|
+
import "./chunks/chunk-2CVHXFK7.js";
|
|
19
19
|
import "./chunks/chunk-CPMHA4W5.js";
|
|
20
20
|
import "./chunks/chunk-BPLIXMH7.js";
|
|
21
21
|
import "./chunks/chunk-FYQWPEEY.js";
|
package/dist/walkKey.js
CHANGED
|
@@ -2,12 +2,12 @@ import {
|
|
|
2
2
|
rangeText,
|
|
3
3
|
walkKey,
|
|
4
4
|
walkPosition
|
|
5
|
-
} from "./chunks/chunk-
|
|
6
|
-
import "./chunks/chunk-
|
|
5
|
+
} from "./chunks/chunk-GOY6REMT.js";
|
|
6
|
+
import "./chunks/chunk-N62KBLFC.js";
|
|
7
7
|
import "./chunks/chunk-AB35TJST.js";
|
|
8
|
-
import "./chunks/chunk-
|
|
9
|
-
import "./chunks/chunk-
|
|
10
|
-
import "./chunks/chunk-
|
|
8
|
+
import "./chunks/chunk-TAMCZHLW.js";
|
|
9
|
+
import "./chunks/chunk-4EMPBO7S.js";
|
|
10
|
+
import "./chunks/chunk-2CVHXFK7.js";
|
|
11
11
|
import "./chunks/chunk-CPMHA4W5.js";
|
|
12
12
|
import "./chunks/chunk-FYQWPEEY.js";
|
|
13
13
|
export {
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/bandage-core",
|
|
3
|
-
"version": "6.0.
|
|
3
|
+
"version": "6.0.4",
|
|
4
4
|
"description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
|
|
5
5
|
"license": "GPL-3.0-or-later",
|
|
6
6
|
"repository": {
|
|
@@ -36,9 +36,7 @@
|
|
|
36
36
|
"dependencies": {
|
|
37
37
|
"@gmod/gbz-base": "^7.0.0",
|
|
38
38
|
"@gmod/tabix": "^3.9.1",
|
|
39
|
-
"@gmod/tubemap-core": "^0.1.0"
|
|
40
|
-
"@jbrowse/core": "5.0.0-beta.11",
|
|
41
|
-
"@jbrowse/render-core": "5.0.0-beta.11"
|
|
39
|
+
"@gmod/tubemap-core": "^0.1.0"
|
|
42
40
|
},
|
|
43
41
|
"devDependencies": {
|
|
44
42
|
"@eslint/js": "^10.0.1",
|
|
@@ -1,29 +0,0 @@
|
|
|
1
|
-
// src/renderer/colorBits.ts
|
|
2
|
-
import {
|
|
3
|
-
abgrAlpha,
|
|
4
|
-
abgrBlue,
|
|
5
|
-
abgrGreen,
|
|
6
|
-
abgrRed,
|
|
7
|
-
packAbgr
|
|
8
|
-
} from "@jbrowse/core/util/colorBits";
|
|
9
|
-
function fadeAbgr(c, alpha) {
|
|
10
|
-
return packAbgr(
|
|
11
|
-
abgrRed(c),
|
|
12
|
-
abgrGreen(c),
|
|
13
|
-
abgrBlue(c),
|
|
14
|
-
Math.round(abgrAlpha(c) * alpha)
|
|
15
|
-
);
|
|
16
|
-
}
|
|
17
|
-
function brightenAbgr(c, factor) {
|
|
18
|
-
return packAbgr(
|
|
19
|
-
Math.min(255, Math.round(abgrRed(c) * factor)),
|
|
20
|
-
Math.min(255, Math.round(abgrGreen(c) * factor)),
|
|
21
|
-
Math.min(255, Math.round(abgrBlue(c) * factor)),
|
|
22
|
-
abgrAlpha(c)
|
|
23
|
-
);
|
|
24
|
-
}
|
|
25
|
-
|
|
26
|
-
export {
|
|
27
|
-
fadeAbgr,
|
|
28
|
-
brightenAbgr
|
|
29
|
-
};
|