@jbrowse/bandage-core 6.0.1 → 6.0.3

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Files changed (162) hide show
  1. package/README.md +23 -7
  2. package/dist/alleleProjection/projectAlleles.js +10 -0
  3. package/dist/anchoredNodes.js +24 -0
  4. package/dist/bubbleSpreads.js +11 -0
  5. package/dist/bubbles/bubbleHalos.js +11 -0
  6. package/dist/bubbles/bubbleLine.js +14 -0
  7. package/dist/bubbles/bubblesFromGraph.js +10 -0
  8. package/dist/bubbles/classifyBubble.js +15 -0
  9. package/dist/bubbles/popBubble.js +9 -0
  10. package/dist/chunks/chunk-2CVHXFK7.js +530 -0
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  85. package/dist/cli/figure.js +84 -17
  86. package/dist/colorSchemes.js +10 -0
  87. package/dist/deletionEdges.js +13 -0
  88. package/dist/el.js +8 -0
  89. package/dist/facetGrid.js +16 -0
  90. package/dist/figure.js +51 -0
  91. package/dist/gaf/parseGaf.js +12 -0
  92. package/dist/gbzCut.js +19 -0
  93. package/dist/gbzJoin.js +6 -0
  94. package/dist/gbzWindow.js +28 -0
  95. package/dist/genes/exonOutline.js +11 -0
  96. package/dist/genes/geneFiles.js +14 -0
  97. package/dist/genes/genePins.js +10 -0
  98. package/dist/gfa/gfaConverter.js +11 -0
  99. package/dist/gfa-core/gfaParser.js +8 -0
  100. package/dist/gfa-core/index.js +9 -0
  101. package/dist/graphLabels.js +24 -0
  102. package/dist/index.js +262 -1407
  103. package/dist/labelLayout.js +24 -0
  104. package/dist/layout/anchoredLayout.js +11 -0
  105. package/dist/layout/deletionRoutes.js +10 -0
  106. package/dist/layout/drawnScale.js +22 -0
  107. package/dist/layout/mergeRuns.js +15 -0
  108. package/dist/layout/orderedLayout.js +12 -0
  109. package/dist/layout/orientToReference.js +7 -0
  110. package/dist/layout/placeOffReference.js +9 -0
  111. package/dist/layout/referenceSeeds.js +11 -0
  112. package/dist/layout/rowSpacing.js +6 -0
  113. package/dist/layout/sampleRowLayout.js +11 -0
  114. package/dist/layout/trimToWindow.js +99 -0
  115. package/dist/layout/tubeMapLayout.js +28 -0
  116. package/dist/layout/walkRowDraw.js +65 -0
  117. package/dist/layout/walkRowLayout.js +13 -0
  118. package/dist/layout/walkRows.js +11 -0
  119. package/dist/layout/walkStrip.js +40 -0
  120. package/dist/layoutModes.js +35 -0
  121. package/dist/loadBandage.js +6 -0
  122. package/dist/nodeWidths.js +18 -0
  123. package/dist/overlayLabels.js +18 -0
  124. package/dist/pansn.js +18 -0
  125. package/dist/pathAnchoring.js +18 -0
  126. package/dist/pathColors.js +31 -0
  127. package/dist/pipeline.js +40 -0
  128. package/dist/reference.js +24 -0
  129. package/dist/referenceRampCss.js +29 -0
  130. package/dist/referenceSpan.js +11 -0
  131. package/dist/referenceStrip.js +35 -0
  132. package/dist/renderer/Canvas2DRenderer.js +9 -0
  133. package/dist/renderer/GeometryBuilder.js +42 -0
  134. package/dist/renderer/colorBits.js +8 -0
  135. package/dist/renderer/recordingCanvas.js +44 -0
  136. package/dist/renderer/svgCanvas.js +6 -0
  137. package/dist/renderer/types.js +0 -0
  138. package/dist/tubeMap/axis.js +25 -0
  139. package/dist/tubeMap/coarsen.js +361 -0
  140. package/dist/tubeMap/connectors.js +13 -0
  141. package/dist/tubeMap/deviations.js +85 -0
  142. package/dist/tubeMap/draw.js +15 -0
  143. package/dist/tubeMap/frame.js +9 -0
  144. package/dist/tubeMap/genes.js +20 -0
  145. package/dist/tubeMap/mismatches.js +6 -0
  146. package/dist/tubeMap/nodeColors.js +21 -0
  147. package/dist/tubeMap/reads.js +17 -0
  148. package/dist/tubeMap/warp.js +8 -0
  149. package/dist/types/version.d.ts +1 -1
  150. package/dist/types.js +0 -0
  151. package/dist/util/SpatialIndex.js +13 -0
  152. package/dist/util/edgeCurves.js +10 -0
  153. package/dist/util/geometry.js +39 -0
  154. package/dist/util/hitDetection.js +20 -0
  155. package/dist/util/wheelZoom.js +6 -0
  156. package/dist/version.js +6 -0
  157. package/dist/viewport.js +33 -0
  158. package/dist/walkEncoding.js +39 -0
  159. package/dist/walkHighlight.js +26 -0
  160. package/dist/walkKey.js +17 -0
  161. package/package.json +38 -5
  162. package/dist/chunks/chunk-EXSFRX2F.js +0 -7400

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