@jbrowse/bandage-core 4.1.0 → 4.2.0

package/dist/chunks/{chunk-WAW4SYMY.js → chunk-FPBV6GNR.js}

@@ -3093,7 +3093,7 @@ var LAYOUT_MODES = [
   {
     value: "walkrows",
     label: "Walk rows",
-    description: "x is each walk's own bp: one bar per haplotype, blue where the graph aligns it to the reference and purple where it does not, so a repeat expansion reads as bar length, and each bar boxes its haplotype's own genes where the session has them. Needs W or P lines.",
+    description: "x is each walk's own bp: one bar per haplotype, blue on the reference's path and purple off it, so a repeat expansion reads as bar length, and each bar boxes its haplotype's own genes where the session has them. Needs W or P lines.",
     run: walkRowLayout,
     cutMargins: false,
     wholeWalks: true,
@@ -4914,14 +4914,14 @@ function walkRowsKey(bars, o = {}) {
         kind: "bar",
         fill: o.ramp ? o.rampCss ?? ON_REFERENCE : ON_REFERENCE
       },
-      label: `aligned to ${bars.reference.label} in the graph`
+      label: `on ${bars.reference.label}'s path`
     },
     {
       swatch: {
         kind: "bar",
         fill: o.ramp ? REFERENCE_RAMP_ALT_CSS : OFF_REFERENCE
       },
-      label: "not aligned to it in the graph"
+      label: `off ${bars.reference.label}'s path`
     }
   ];
   if ([bars.reference, ...bars.rows].some((row) => row.gapBp > 0)) {
@@ -5254,7 +5254,7 @@ function svgCanvas(width, height) {
 }
 
 // src/version.ts
-var version = "4.1.0";
+var version = "4.2.0";
 
 // src/viewport.ts
 function axisScaleOf(scale, pixelRows) {

package/dist/cli/figure.js

@@ -17,7 +17,7 @@ import {
   openGbz,
   parseRegion,
   refNameBinding
-} from "../chunks/chunk-WAW4SYMY.js";
+} from "../chunks/chunk-FPBV6GNR.js";
 
 // src/cli/figure.ts
 import { access, open, readFile, writeFile } from "node:fs/promises";

package/dist/index.js

@@ -126,7 +126,7 @@ import {
   wellKnownSample,
   yToXOf,
   zoomAbout
-} from "./chunks/chunk-WAW4SYMY.js";
+} from "./chunks/chunk-FPBV6GNR.js";
 
 // src/index.ts
 import { getDpr } from "@jbrowse/render-core/canvas2dUtils";

package/dist/types/layoutModes.d.ts

@@ -42,7 +42,7 @@ export declare const LAYOUT_MODES: readonly [{
 }, {
     readonly value: "walkrows";
     readonly label: "Walk rows";
-    readonly description: "x is each walk's own bp: one bar per haplotype, blue where the graph aligns it to the reference and purple where it does not, so a repeat expansion reads as bar length, and each bar boxes its haplotype's own genes where the session has them. Needs W or P lines.";
+    readonly description: "x is each walk's own bp: one bar per haplotype, blue on the reference's path and purple off it, so a repeat expansion reads as bar length, and each bar boxes its haplotype's own genes where the session has them. Needs W or P lines.";
     readonly run: typeof walkRowLayout;
     readonly cutMargins: false;
     readonly wholeWalks: true;
@@ -116,7 +116,7 @@ export declare function layoutModeByValue(value: string): {
 } | {
     readonly value: "walkrows";
     readonly label: "Walk rows";
-    readonly description: "x is each walk's own bp: one bar per haplotype, blue where the graph aligns it to the reference and purple where it does not, so a repeat expansion reads as bar length, and each bar boxes its haplotype's own genes where the session has them. Needs W or P lines.";
+    readonly description: "x is each walk's own bp: one bar per haplotype, blue on the reference's path and purple off it, so a repeat expansion reads as bar length, and each bar boxes its haplotype's own genes where the session has them. Needs W or P lines.";
     readonly run: typeof walkRowLayout;
     readonly cutMargins: false;
     readonly wholeWalks: true;

package/dist/types/version.d.ts

@@ -1 +1 @@
-export declare const version = "4.1.0";
+export declare const version = "4.2.0";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/bandage-core",
-  "version": "4.1.0",
+  "version": "4.2.0",
   "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
   "license": "GPL-3.0-or-later",
   "repository": {