@jbrowse/bandage-core 11.9.0 → 11.10.0

package/dist/chunks/{chunk-N3DCLT7M.js → chunk-2NCZ5YYN.js}

@@ -1,5 +1,5 @@
 // src/version.ts
-var version = "11.9.0";
+var version = "11.10.0";
 
 export {
   version

package/dist/chunks/{chunk-GYJMPVOU.js → chunk-337LZP7C.js}

@@ -1,7 +1,7 @@
 import {
   computeColorSchemeRange,
   getNodeColor
-} from "./chunk-GDZQFELP.js";
+} from "./chunk-53DZE3SA.js";
 import {
   abgrToCssRgba
 } from "./chunk-G2FD7S3C.js";

package/dist/chunks/{chunk-3BDQQTXY.js → chunk-4KBZ7WPP.js}

@@ -367,7 +367,12 @@ function repeats(passes) {
 }
 function walkThreads(route, passes, nodePositions, yToX, reach) {
   if (!repeats(passes)) {
-    return { span: passes, nodeThreads: /* @__PURE__ */ new Map(), linkThreads: /* @__PURE__ */ new Map() };
+    return {
+      span: passes,
+      nodeThreads: /* @__PURE__ */ new Map(),
+      threadPasses: /* @__PURE__ */ new Map(),
+      linkThreads: /* @__PURE__ */ new Map()
+    };
   }
   const index = /* @__PURE__ */ new Map();
   const ids = [];
@@ -449,12 +454,18 @@ function walkThreads(route, passes, nodePositions, yToX, reach) {
   });
   const span = /* @__PURE__ */ new Map();
   const nodeThreads = /* @__PURE__ */ new Map();
+  const threadPasses = /* @__PURE__ */ new Map();
   ids.forEach((id, k) => {
     span.set(id, widths[k]);
     nodeThreads.set(
       id,
       taken[k] ? [...taken[k]].sort((a, b) => a - b) : ONE_THREAD
     );
+    const passOf = [];
+    threadOf[k]?.forEach((thread, visit) => {
+      passOf[thread] = visit - 1;
+    });
+    threadPasses.set(id, passOf);
   });
   const linkThreads = /* @__PURE__ */ new Map();
   steps.forEach((nodes, piece) => {
@@ -479,7 +490,7 @@ function walkThreads(route, passes, nodePositions, yToX, reach) {
       }
     }
   });
-  return { span, nodeThreads, linkThreads };
+  return { span, nodeThreads, threadPasses, linkThreads };
 }
 function bandSpans(lanes, spans, { reach, taper }) {
   const out = /* @__PURE__ */ new Map();

package/dist/chunks/{chunk-GDZQFELP.js → chunk-53DZE3SA.js}

@@ -7,7 +7,7 @@ import {
   liftLanes,
   slotCentres,
   threadsPasses
-} from "./chunk-3BDQQTXY.js";
+} from "./chunk-4KBZ7WPP.js";
 import {
   abgrToCssRgba,
   fadeAbgr,
@@ -621,6 +621,7 @@ function buildGeometry(options) {
     const turned = back.map(([a, b]) => [b, a]);
     return ahead ? [...ahead, ...turned] : turned;
   };
+  const threadColor = (lane, nodeId, thread) => liftedWalks[lane]?.passColors.get(nodeId)?.[threads?.[lane]?.threadPasses.get(nodeId)?.[thread] ?? 0];
   const lanePointsOf = (nodeId, segments) => lines?.shifts.has(nodeId) ? segments.map((p, i) => {
     const { dx, dy } = laneShiftOf(nodeId, i);
     return { ...p, x: p.x + dx, y: p.y + dy };
@@ -746,7 +747,7 @@ function buildGeometry(options) {
             laneStroke(
               curves,
               thickness,
-              walk.colors.get(edge.from) ?? walk.colors.get(edge.to) ?? plainEdgeColor,
+              threadColor(lane, edge.from, pass) ?? threadColor(lane, edge.to, toPass) ?? plainEdgeColor,
               lane,
               pass,
               from.normal,
@@ -834,11 +835,12 @@ function buildGeometry(options) {
         }
         const onThreads = threads?.[lane]?.nodeThreads.get(nodeId) ?? ONE_PASS;
         for (const pass of onThreads) {
+          const color2 = threadColor(lane, nodeId, pass) ?? laneColor;
           if (lanes.length === 1) {
             nodeStrokes.push({
               points: segments,
               thickness,
-              color: laneColor,
+              color: color2,
               walk: lane,
               pass
             });
@@ -848,7 +850,7 @@ function buildGeometry(options) {
           nodeStrokes.push({
             points: offsetPolyline(points, normals, offsetX, yToX),
             thickness,
-            color: laneColor,
+            color: color2,
             walk: lane,
             pass,
             normals,

package/dist/chunks/{chunk-ZWBQ4RRK.js → chunk-54C73ICS.js}

@@ -2,10 +2,10 @@ import {
   encodedColor,
   resolveEncoding,
   splitFamilies
-} from "./chunk-UEWIGD52.js";
+} from "./chunk-UVRCXTBY.js";
 import {
   rampFraction
-} from "./chunk-GDZQFELP.js";
+} from "./chunk-53DZE3SA.js";
 import {
   gapParts
 } from "./chunk-LG2UK4MB.js";
@@ -55,6 +55,7 @@ function highlightOf(graph, name, { byId, edgeAt }) {
   const nodeIds = /* @__PURE__ */ new Set();
   const edgeIndexes = /* @__PURE__ */ new Set();
   const progress = /* @__PURE__ */ new Map();
+  const passProgress = /* @__PURE__ */ new Map();
   const passes = /* @__PURE__ */ new Map();
   let mostPasses = 1;
   let before = 0;
@@ -75,8 +76,15 @@ function highlightOf(graph, name, { byId, edgeAt }) {
         }
       }
       const length = lengthOf(id);
+      const at = span > 0 ? (before + length / 2) / span : 0;
       if (!progress.has(id)) {
-        progress.set(id, span > 0 ? (before + length / 2) / span : 0);
+        progress.set(id, at);
+      }
+      const seen = passProgress.get(id);
+      if (seen) {
+        seen.push(at);
+      } else {
+        passProgress.set(id, [at]);
       }
       before += length;
     });
@@ -113,6 +121,7 @@ function highlightOf(graph, name, { byId, edgeAt }) {
     nodeIds,
     edgeIndexes,
     progress,
+    passProgress,
     passes,
     mostPasses,
     route: pieces.map((piece) => piece.nodeIds),
@@ -125,12 +134,17 @@ function highlightOf(graph, name, { byId, edgeAt }) {
 }
 function laneColors(byId, walk, encoding, ramp) {
   const colors = /* @__PURE__ */ new Map();
-  for (const [id, progress] of walk.progress) {
+  const passColors = /* @__PURE__ */ new Map();
+  for (const [id, progress] of walk.passProgress) {
     const node = byId.get(id);
-    const t = encoding.field === "progress" ? progress : ramp && node ? rampFraction(node, ramp) : void 0;
-    colors.set(id, encodedColor(encoding, t));
+    const atNode = ramp && node ? rampFraction(node, ramp) : void 0;
+    const each = progress.map(
+      (t) => encodedColor(encoding, encoding.field === "progress" ? t : atNode)
+    );
+    colors.set(id, each[0]);
+    passColors.set(id, each);
   }
-  return colors;
+  return { colors, passColors };
 }
 function reversedNodes(graph, byId, walk) {
   const reversed = /* @__PURE__ */ new Set();
@@ -184,7 +198,7 @@ function walkLift(graph, layers, ramp) {
     return {
       ...walk,
       encoding,
-      colors: laneColors(index.byId, walk, encoding, ramp),
+      ...laneColors(index.byId, walk, encoding, ramp),
       reversed,
       reversedBp: bp
     };
@@ -206,7 +220,7 @@ function facetLifts(graph, lift, layers, ramp) {
         {
           ...walk,
           encoding,
-          colors: laneColors(byId, walk, encoding, ramp)
+          ...laneColors(byId, walk, encoding, ramp)
         }
       ],
       ramp

package/dist/chunks/{chunk-T2UNTWU5.js → chunk-55DRWHBF.js}

@@ -12,21 +12,21 @@ import {
 } from "./chunk-HEYIAMTC.js";
 import {
   version
-} from "./chunk-N3DCLT7M.js";
+} from "./chunk-2NCZ5YYN.js";
 import {
   axisScaleOf
 } from "./chunk-3DHGSHC3.js";
 import {
   figureScene
-} from "./chunk-I5CHAYDZ.js";
+} from "./chunk-YQAZNH37.js";
 import {
   encodingStops
-} from "./chunk-UEWIGD52.js";
+} from "./chunk-UVRCXTBY.js";
 import {
   laneSlideAt,
   passesKey,
   threadsPasses
-} from "./chunk-3BDQQTXY.js";
+} from "./chunk-4KBZ7WPP.js";
 import {
   abgrAlpha,
   abgrBlue,

package/dist/chunks/{chunk-JO2T77NW.js → chunk-77O67GIB.js}

@@ -3,7 +3,7 @@ import {
   boxesGenes,
   rowPitch,
   rowSpan
-} from "./chunk-IXLT3JJX.js";
+} from "./chunk-ALOF5SOT.js";
 import {
   el
 } from "./chunk-H2H4Y3TV.js";

package/dist/chunks/{chunk-IXLT3JJX.js → chunk-ALOF5SOT.js}

@@ -3,7 +3,7 @@ import {
 } from "./chunk-H2H4Y3TV.js";
 import {
   REFERENCE_RAMP_ALT_CSS
-} from "./chunk-GDZQFELP.js";
+} from "./chunk-53DZE3SA.js";
 import {
   RAMP_GRADIENT_CSS,
   RAMP_GRADIENT_STOPS,

package/dist/chunks/{chunk-3BOREHCJ.js → chunk-CHGTUO3C.js}

@@ -2,7 +2,7 @@ import {
   stripGeneGaps,
   walkStripFrame,
   walkStripLabelsTree
-} from "./chunk-JO2T77NW.js";
+} from "./chunk-77O67GIB.js";
 import {
   Canvas2DRenderer
 } from "./chunk-4DMSPNYV.js";
@@ -13,7 +13,7 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "./chunk-IXLT3JJX.js";
+} from "./chunk-ALOF5SOT.js";
 import {
   EXON_COLOR,
   exonOutlineTree,
@@ -34,21 +34,21 @@ import {
 } from "./chunk-HEYIAMTC.js";
 import {
   version
-} from "./chunk-N3DCLT7M.js";
+} from "./chunk-2NCZ5YYN.js";
 import {
   axisScaleOf
 } from "./chunk-3DHGSHC3.js";
 import {
   figureScene
-} from "./chunk-I5CHAYDZ.js";
+} from "./chunk-YQAZNH37.js";
 import {
   encodingStops
-} from "./chunk-UEWIGD52.js";
+} from "./chunk-UVRCXTBY.js";
 import {
   THREAD_PX,
   passesKey,
   threadsPasses
-} from "./chunk-3BDQQTXY.js";
+} from "./chunk-4KBZ7WPP.js";
 import {
   rangeText
 } from "./chunk-IZKM4NY7.js";

package/dist/chunks/{chunk-VTGQCLGI.js → chunk-SPEB75UH.js}

@@ -2,7 +2,7 @@ import {
   LIFT_BACKDROP_CSS,
   computeColorSchemeRange,
   getNodeColor
-} from "./chunk-GDZQFELP.js";
+} from "./chunk-53DZE3SA.js";
 import {
   abgrToCssRgba
 } from "./chunk-G2FD7S3C.js";

package/dist/chunks/{chunk-UEWIGD52.js → chunk-UVRCXTBY.js}

@@ -1,7 +1,7 @@
 import {
   REFERENCE_RAMP_ALT_COLOR,
   hslToRgb
-} from "./chunk-GDZQFELP.js";
+} from "./chunk-53DZE3SA.js";
 import {
   packAbgr
 } from "./chunk-G2FD7S3C.js";
@@ -23,6 +23,7 @@ var WALK_SCHEMES = [
   { value: "red", label: "Yellow to red", ends: ["#ffd24a", "#b3121b"] },
   { value: "purple", label: "Pink to plum", ends: ["#f5a3d8", "#5e1a6e"] },
   { value: "green", label: "Lime to forest", ends: ["#b6e36c", "#0b5d3b"] },
+  { value: "orange", label: "Peach to rust", ends: ["#ffc285", "#8f3a00"] },
   { value: "rainbow", label: "Rainbow" }
 ];
 var FAMILIES = ["blue", "red", "purple", "green"];

package/dist/chunks/{chunk-I5CHAYDZ.js → chunk-YQAZNH37.js}

@@ -4,11 +4,11 @@ import {
 import {
   facetLifts,
   walkLift
-} from "./chunk-ZWBQ4RRK.js";
+} from "./chunk-54C73ICS.js";
 import {
   buildGeometry,
   computeReferenceRamp
-} from "./chunk-GDZQFELP.js";
+} from "./chunk-53DZE3SA.js";
 import {
   walkKey
 } from "./chunk-IZKM4NY7.js";

package/dist/cli/figure.js

@@ -8,15 +8,15 @@ import {
 import "../chunks/chunk-EQDQ7P4Y.js";
 import {
   figureSvg
-} from "../chunks/chunk-3BOREHCJ.js";
-import "../chunks/chunk-JO2T77NW.js";
+} from "../chunks/chunk-CHGTUO3C.js";
+import "../chunks/chunk-77O67GIB.js";
 import "../chunks/chunk-4DMSPNYV.js";
 import "../chunks/chunk-RBCE2OQH.js";
 import "../chunks/chunk-V4YML3GR.js";
 import {
   genesOnRow,
   placeRowGenes
-} from "../chunks/chunk-IXLT3JJX.js";
+} from "../chunks/chunk-ALOF5SOT.js";
 import "../chunks/chunk-JSUCGZ6K.js";
 import "../chunks/chunk-TQ26XEFL.js";
 import "../chunks/chunk-4JDO7ZLN.js";
@@ -25,7 +25,7 @@ import "../chunks/chunk-H2H4Y3TV.js";
 import {
   laidOutGraph,
   walkLayers
-} from "../chunks/chunk-T2UNTWU5.js";
+} from "../chunks/chunk-55DRWHBF.js";
 import {
   LAYOUT_ENGINE_VALUES,
   isLayoutEngineKind
@@ -51,14 +51,14 @@ import {
 import "../chunks/chunk-ZKSC7QVE.js";
 import "../chunks/chunk-HNWJ4B7S.js";
 import "../chunks/chunk-HEYIAMTC.js";
-import "../chunks/chunk-N3DCLT7M.js";
+import "../chunks/chunk-2NCZ5YYN.js";
 import "../chunks/chunk-3DHGSHC3.js";
-import "../chunks/chunk-I5CHAYDZ.js";
+import "../chunks/chunk-YQAZNH37.js";
 import "../chunks/chunk-LOCJN3BZ.js";
-import "../chunks/chunk-ZWBQ4RRK.js";
-import "../chunks/chunk-UEWIGD52.js";
-import "../chunks/chunk-GDZQFELP.js";
-import "../chunks/chunk-3BDQQTXY.js";
+import "../chunks/chunk-54C73ICS.js";
+import "../chunks/chunk-UVRCXTBY.js";
+import "../chunks/chunk-53DZE3SA.js";
+import "../chunks/chunk-4KBZ7WPP.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-IZKM4NY7.js";
 import "../chunks/chunk-GQZVR5DW.js";

package/dist/figure.js

@@ -1,25 +1,25 @@
 import {
   figureSvg
-} from "./chunks/chunk-3BOREHCJ.js";
-import "./chunks/chunk-JO2T77NW.js";
+} from "./chunks/chunk-CHGTUO3C.js";
+import "./chunks/chunk-77O67GIB.js";
 import "./chunks/chunk-4DMSPNYV.js";
 import "./chunks/chunk-RBCE2OQH.js";
 import "./chunks/chunk-V4YML3GR.js";
-import "./chunks/chunk-IXLT3JJX.js";
+import "./chunks/chunk-ALOF5SOT.js";
 import "./chunks/chunk-JSUCGZ6K.js";
 import "./chunks/chunk-TQ26XEFL.js";
 import "./chunks/chunk-4JDO7ZLN.js";
 import "./chunks/chunk-7YSIP3O2.js";
 import "./chunks/chunk-H2H4Y3TV.js";
 import "./chunks/chunk-HEYIAMTC.js";
-import "./chunks/chunk-N3DCLT7M.js";
+import "./chunks/chunk-2NCZ5YYN.js";
 import "./chunks/chunk-3DHGSHC3.js";
-import "./chunks/chunk-I5CHAYDZ.js";
+import "./chunks/chunk-YQAZNH37.js";
 import "./chunks/chunk-LOCJN3BZ.js";
-import "./chunks/chunk-ZWBQ4RRK.js";
-import "./chunks/chunk-UEWIGD52.js";
-import "./chunks/chunk-GDZQFELP.js";
-import "./chunks/chunk-3BDQQTXY.js";
+import "./chunks/chunk-54C73ICS.js";
+import "./chunks/chunk-UVRCXTBY.js";
+import "./chunks/chunk-53DZE3SA.js";
+import "./chunks/chunk-4KBZ7WPP.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-IZKM4NY7.js";
 import "./chunks/chunk-GQZVR5DW.js";

package/dist/figureData.js

@@ -3,7 +3,7 @@ import {
   gfaFigureData,
   laidOutGraph,
   walkLayers
-} from "./chunks/chunk-T2UNTWU5.js";
+} from "./chunks/chunk-55DRWHBF.js";
 import "./chunks/chunk-CO6RGQAD.js";
 import "./chunks/chunk-ARXDNQLF.js";
 import "./chunks/chunk-BDS5VZYZ.js";
@@ -18,14 +18,14 @@ import "./chunks/chunk-FNDNSDKW.js";
 import "./chunks/chunk-ZKSC7QVE.js";
 import "./chunks/chunk-HNWJ4B7S.js";
 import "./chunks/chunk-HEYIAMTC.js";
-import "./chunks/chunk-N3DCLT7M.js";
+import "./chunks/chunk-2NCZ5YYN.js";
 import "./chunks/chunk-3DHGSHC3.js";
-import "./chunks/chunk-I5CHAYDZ.js";
+import "./chunks/chunk-YQAZNH37.js";
 import "./chunks/chunk-LOCJN3BZ.js";
-import "./chunks/chunk-ZWBQ4RRK.js";
-import "./chunks/chunk-UEWIGD52.js";
-import "./chunks/chunk-GDZQFELP.js";
-import "./chunks/chunk-3BDQQTXY.js";
+import "./chunks/chunk-54C73ICS.js";
+import "./chunks/chunk-UVRCXTBY.js";
+import "./chunks/chunk-53DZE3SA.js";
+import "./chunks/chunk-4KBZ7WPP.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-IZKM4NY7.js";
 import "./chunks/chunk-GQZVR5DW.js";

package/dist/figureScene.js

@@ -1,11 +1,11 @@
 import {
   figureScene
-} from "./chunks/chunk-I5CHAYDZ.js";
+} from "./chunks/chunk-YQAZNH37.js";
 import "./chunks/chunk-LOCJN3BZ.js";
-import "./chunks/chunk-ZWBQ4RRK.js";
-import "./chunks/chunk-UEWIGD52.js";
-import "./chunks/chunk-GDZQFELP.js";
-import "./chunks/chunk-3BDQQTXY.js";
+import "./chunks/chunk-54C73ICS.js";
+import "./chunks/chunk-UVRCXTBY.js";
+import "./chunks/chunk-53DZE3SA.js";
+import "./chunks/chunk-4KBZ7WPP.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-IZKM4NY7.js";
 import "./chunks/chunk-GQZVR5DW.js";

package/dist/index.js

@@ -11,7 +11,7 @@ import {
 } from "./chunks/chunk-RT4U3DH3.js";
 import {
   tubeMapNodeColors
-} from "./chunks/chunk-GYJMPVOU.js";
+} from "./chunks/chunk-337LZP7C.js";
 import {
   bundleRoutes
 } from "./chunks/chunk-S6E3PMH7.js";
@@ -82,7 +82,7 @@ import {
   drawReferenceStrip,
   referenceStripBlocks,
   stripBlockAt
-} from "./chunks/chunk-VTGQCLGI.js";
+} from "./chunks/chunk-SPEB75UH.js";
 import {
   LAYOUT_QUALITIES
 } from "./chunks/chunk-K5SIJGAE.js";
@@ -96,7 +96,7 @@ import {
 } from "./chunks/chunk-AZFVORTC.js";
 import {
   figureSvg
-} from "./chunks/chunk-3BOREHCJ.js";
+} from "./chunks/chunk-CHGTUO3C.js";
 import {
   WALK_STRIP_CEILING_PX,
   cutsWholeWalks,
@@ -108,7 +108,7 @@ import {
   walkStripApplies,
   walkStripFrame,
   walkStripLabelsTree
-} from "./chunks/chunk-JO2T77NW.js";
+} from "./chunks/chunk-77O67GIB.js";
 import {
   Canvas2DRenderer
 } from "./chunks/chunk-4DMSPNYV.js";
@@ -145,7 +145,7 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "./chunks/chunk-IXLT3JJX.js";
+} from "./chunks/chunk-ALOF5SOT.js";
 import {
   EXON_COLOR,
   exonOutlineTree,
@@ -169,7 +169,7 @@ import {
 import {
   figureData,
   gfaFigureData
-} from "./chunks/chunk-T2UNTWU5.js";
+} from "./chunks/chunk-55DRWHBF.js";
 import {
   LAYOUT_ENGINES,
   layoutEngine
@@ -209,7 +209,7 @@ import {
 } from "./chunks/chunk-HEYIAMTC.js";
 import {
   version
-} from "./chunks/chunk-N3DCLT7M.js";
+} from "./chunks/chunk-2NCZ5YYN.js";
 import {
   axisScaleOf,
   contains,
@@ -218,7 +218,7 @@ import {
   viewportOf,
   zoomAbout
 } from "./chunks/chunk-3DHGSHC3.js";
-import "./chunks/chunk-I5CHAYDZ.js";
+import "./chunks/chunk-YQAZNH37.js";
 import {
   layoutGeometryInputs
 } from "./chunks/chunk-LOCJN3BZ.js";
@@ -226,7 +226,7 @@ import {
   facetLifts,
   walkHighlight,
   walkLift
-} from "./chunks/chunk-ZWBQ4RRK.js";
+} from "./chunks/chunk-54C73ICS.js";
 import {
   WALK_FIELDS,
   WALK_SCHEMES,
@@ -234,12 +234,12 @@ import {
   encodingSwatchCss,
   resolveEncoding,
   schemeCss
-} from "./chunks/chunk-UEWIGD52.js";
+} from "./chunks/chunk-UVRCXTBY.js";
 import {
   buildGeometry,
   computeReferenceRamp
-} from "./chunks/chunk-GDZQFELP.js";
-import "./chunks/chunk-3BDQQTXY.js";
+} from "./chunks/chunk-53DZE3SA.js";
+import "./chunks/chunk-4KBZ7WPP.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import {
   rangeText,

package/dist/layout/walkRowDraw.js

@@ -30,10 +30,10 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "../chunks/chunk-IXLT3JJX.js";
+} from "../chunks/chunk-ALOF5SOT.js";
 import "../chunks/chunk-H2H4Y3TV.js";
-import "../chunks/chunk-GDZQFELP.js";
-import "../chunks/chunk-3BDQQTXY.js";
+import "../chunks/chunk-53DZE3SA.js";
+import "../chunks/chunk-4KBZ7WPP.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-GQZVR5DW.js";
 import "../chunks/chunk-P2GJBFNA.js";

package/dist/layout/walkStrip.js

@@ -9,13 +9,13 @@ import {
   walkStripApplies,
   walkStripFrame,
   walkStripLabelsTree
-} from "../chunks/chunk-JO2T77NW.js";
+} from "../chunks/chunk-77O67GIB.js";
 import {
   LABELLED_ROW_PX
-} from "../chunks/chunk-IXLT3JJX.js";
+} from "../chunks/chunk-ALOF5SOT.js";
 import "../chunks/chunk-H2H4Y3TV.js";
-import "../chunks/chunk-GDZQFELP.js";
-import "../chunks/chunk-3BDQQTXY.js";
+import "../chunks/chunk-53DZE3SA.js";
+import "../chunks/chunk-4KBZ7WPP.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-GQZVR5DW.js";
 import "../chunks/chunk-P2GJBFNA.js";

package/dist/referenceStrip.js

@@ -7,9 +7,9 @@ import {
   stripBlockAt,
   stripOverhang,
   stripPixels
-} from "./chunks/chunk-VTGQCLGI.js";
-import "./chunks/chunk-GDZQFELP.js";
-import "./chunks/chunk-3BDQQTXY.js";
+} from "./chunks/chunk-SPEB75UH.js";
+import "./chunks/chunk-53DZE3SA.js";
+import "./chunks/chunk-4KBZ7WPP.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-GQZVR5DW.js";
 import "./chunks/chunk-P2GJBFNA.js";

package/dist/renderer/GeometryBuilder.js

@@ -11,8 +11,8 @@ import {
   getNodeColor,
   hslToRgb,
   rampFraction
-} from "../chunks/chunk-GDZQFELP.js";
-import "../chunks/chunk-3BDQQTXY.js";
+} from "../chunks/chunk-53DZE3SA.js";
+import "../chunks/chunk-4KBZ7WPP.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import {
   REFERENCE_RAMP_MAX_HUE

package/dist/renderer/walkLanes.js

@@ -19,7 +19,7 @@ import {
   slotCentres,
   threadsPasses,
   walkThreads
-} from "../chunks/chunk-3BDQQTXY.js";
+} from "../chunks/chunk-4KBZ7WPP.js";
 import "../chunks/chunk-JJV2GT2Z.js";
 import "../chunks/chunk-CPMHA4W5.js";
 export {

package/dist/tubeMap/nodeColors.js

@@ -1,8 +1,8 @@
 import {
   tubeMapNodeColors
-} from "../chunks/chunk-GYJMPVOU.js";
-import "../chunks/chunk-GDZQFELP.js";
-import "../chunks/chunk-3BDQQTXY.js";
+} from "../chunks/chunk-337LZP7C.js";
+import "../chunks/chunk-53DZE3SA.js";
+import "../chunks/chunk-4KBZ7WPP.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-GQZVR5DW.js";
 import "../chunks/chunk-P2GJBFNA.js";

package/dist/types/renderer/walkLanes.d.ts

@@ -48,6 +48,7 @@ export declare function laneLines(lanes: LaneRuns, nodePositions: Record<string,
 export interface WalkThreads {
     span: ReadonlyMap<string, number>;
     nodeThreads: Map<string, readonly number[]>;
+    threadPasses: Map<string, readonly number[]>;
     linkThreads: Map<string, Map<string, [number, number][]>>;
 }
 export declare function walkThreads(route: readonly (readonly string[])[], passes: ReadonlyMap<string, number>, nodePositions: Record<string, NodeSegment[]>, yToX: number, reach: number): WalkThreads;

package/dist/types/version.d.ts

@@ -1 +1 @@
-export declare const version = "11.9.0";
+export declare const version = "11.10.0";

package/dist/types/walkEncoding.d.ts

@@ -29,6 +29,10 @@ export declare const WALK_SCHEMES: readonly [{
     readonly value: "green";
     readonly label: "Lime to forest";
     readonly ends: readonly ["#b6e36c", "#0b5d3b"];
+}, {
+    readonly value: "orange";
+    readonly label: "Peach to rust";
+    readonly ends: readonly ["#ffc285", "#8f3a00"];
 }, {
     readonly value: "rainbow";
     readonly label: "Rainbow";

package/dist/types/walkHighlight.d.ts

@@ -7,6 +7,7 @@ export interface WalkHighlight {
     nodeIds: Set<string>;
     edgeIndexes: Set<number>;
     progress: Map<string, number>;
+    passProgress: Map<string, number[]>;
     passes: Map<string, number>;
     mostPasses: number;
     route: readonly (readonly string[])[];
@@ -24,6 +25,7 @@ export interface WalkHighlight {
 export interface LiftedWalk extends WalkHighlight {
     encoding: WalkEncoding;
     colors: Map<string, number>;
+    passColors: Map<string, number[]>;
     reversed: Set<string>;
     reversedBp: number;
 }

package/dist/version.js

@@ -1,6 +1,6 @@
 import {
   version
-} from "./chunks/chunk-N3DCLT7M.js";
+} from "./chunks/chunk-2NCZ5YYN.js";
 export {
   version
 };

package/dist/walkEncoding.js

@@ -10,9 +10,9 @@ import {
   schemeCss,
   schemeRgb,
   splitFamilies
-} from "./chunks/chunk-UEWIGD52.js";
-import "./chunks/chunk-GDZQFELP.js";
-import "./chunks/chunk-3BDQQTXY.js";
+} from "./chunks/chunk-UVRCXTBY.js";
+import "./chunks/chunk-53DZE3SA.js";
+import "./chunks/chunk-4KBZ7WPP.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-GQZVR5DW.js";
 import "./chunks/chunk-P2GJBFNA.js";

package/dist/walkHighlight.js

@@ -2,10 +2,10 @@ import {
   facetLifts,
   walkHighlight,
   walkLift
-} from "./chunks/chunk-ZWBQ4RRK.js";
-import "./chunks/chunk-UEWIGD52.js";
-import "./chunks/chunk-GDZQFELP.js";
-import "./chunks/chunk-3BDQQTXY.js";
+} from "./chunks/chunk-54C73ICS.js";
+import "./chunks/chunk-UVRCXTBY.js";
+import "./chunks/chunk-53DZE3SA.js";
+import "./chunks/chunk-4KBZ7WPP.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-GQZVR5DW.js";
 import "./chunks/chunk-P2GJBFNA.js";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/bandage-core",
-  "version": "11.9.0",
+  "version": "11.10.0",
   "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
   "license": "GPL-3.0-or-later",
   "repository": {