@jbrowse/bandage-core 11.7.3 → 11.9.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (99) hide show
  1. package/README.md +59 -19
  2. package/dist/bubbles/bubbleHalos.js +6 -6
  3. package/dist/bubbles/classifyBubble.js +5 -5
  4. package/dist/bubbles/superbubbles.js +7 -7
  5. package/dist/chunks/{chunk-K4KVAMEF.js → chunk-2A6Z2DHF.js} +1 -1
  6. package/dist/chunks/{chunk-4SN7R4UF.js → chunk-2MXFG3W7.js} +1 -1
  7. package/dist/chunks/chunk-3BDQQTXY.js +568 -0
  8. package/dist/chunks/{chunk-QXBQDHKL.js → chunk-3BOREHCJ.js} +80 -38
  9. package/dist/chunks/{chunk-F4CDC72I.js → chunk-3DHGSHC3.js} +1 -1
  10. package/dist/chunks/{chunk-P276TWPM.js → chunk-3GORESBG.js} +1 -1
  11. package/dist/chunks/{chunk-4KOYS5WR.js → chunk-4BYGFDQB.js} +1 -1
  12. package/dist/chunks/{chunk-LH436HS2.js → chunk-4JDO7ZLN.js} +2 -2
  13. package/dist/chunks/{chunk-2US43KNG.js → chunk-7YSIP3O2.js} +2 -2
  14. package/dist/chunks/{chunk-VNF236GG.js → chunk-ARXDNQLF.js} +2 -2
  15. package/dist/chunks/{chunk-N73RA4DR.js → chunk-AURNOR27.js} +3 -3
  16. package/dist/chunks/{chunk-63XWYNID.js → chunk-BDS5VZYZ.js} +4 -4
  17. package/dist/chunks/{chunk-BXE3SBBN.js → chunk-C3KAPREU.js} +1 -1
  18. package/dist/chunks/{chunk-VXKL2ZLR.js → chunk-GDZQFELP.js} +259 -60
  19. package/dist/chunks/{chunk-2T3V6Z3M.js → chunk-GYJMPVOU.js} +1 -1
  20. package/dist/chunks/{chunk-BFUS3ENH.js → chunk-HEYIAMTC.js} +2 -2
  21. package/dist/chunks/{chunk-HMEAGAGC.js → chunk-HIN56TLA.js} +2 -2
  22. package/dist/chunks/{chunk-2VMKQKVO.js → chunk-HNNP5QUN.js} +1 -1
  23. package/dist/chunks/{chunk-W5YRBEWQ.js → chunk-I53QYITQ.js} +1 -1
  24. package/dist/chunks/{chunk-UTDMFVC7.js → chunk-I5CHAYDZ.js} +8 -8
  25. package/dist/chunks/{chunk-EPOPGV5G.js → chunk-IXLT3JJX.js} +1 -1
  26. package/dist/chunks/{chunk-SG7VQB4F.js → chunk-IZKM4NY7.js} +1 -1
  27. package/dist/chunks/{chunk-KMLATBNT.js → chunk-J7RNXBXA.js} +3 -3
  28. package/dist/chunks/{chunk-VACK24HF.js → chunk-JJV2GT2Z.js} +43 -9
  29. package/dist/chunks/{chunk-PKGPSTRW.js → chunk-JO2T77NW.js} +2 -2
  30. package/dist/chunks/{chunk-XKPXOIWD.js → chunk-JVT3XTKN.js} +3 -3
  31. package/dist/chunks/{chunk-SDI6BVG7.js → chunk-KKHXMJEE.js} +1 -1
  32. package/dist/chunks/{chunk-G7SG4XMK.js → chunk-LODKC7PJ.js} +7 -0
  33. package/dist/chunks/{chunk-AJQRKN3X.js → chunk-N3DCLT7M.js} +1 -1
  34. package/dist/chunks/{chunk-ZZZ6NVLW.js → chunk-NAYS472K.js} +1 -1
  35. package/dist/chunks/{chunk-AWJJSA7D.js → chunk-NWEVR2OQ.js} +1 -1
  36. package/dist/chunks/{chunk-33KUO34R.js → chunk-P2GJBFNA.js} +1 -1
  37. package/dist/chunks/{chunk-IHM43Y7B.js → chunk-RT4U3DH3.js} +1 -1
  38. package/dist/chunks/{chunk-XTCIKBWM.js → chunk-S6E3PMH7.js} +1 -1
  39. package/dist/chunks/{chunk-BLDUBB7X.js → chunk-SZYFZNCO.js} +2 -2
  40. package/dist/chunks/{chunk-T3MEG5D3.js → chunk-T2UNTWU5.js} +90 -21
  41. package/dist/chunks/{chunk-QJC63NFR.js → chunk-TQ26XEFL.js} +2 -2
  42. package/dist/chunks/{chunk-6RB5ZQ34.js → chunk-UEWIGD52.js} +51 -14
  43. package/dist/chunks/{chunk-SENPGW4O.js → chunk-VCUOYVLC.js} +1 -1
  44. package/dist/chunks/{chunk-CL6ELLVF.js → chunk-VNCHWWLG.js} +1 -1
  45. package/dist/chunks/{chunk-GD6RUZU5.js → chunk-VQ353UDK.js} +14 -8
  46. package/dist/chunks/{chunk-QLLKALSH.js → chunk-VTGQCLGI.js} +1 -1
  47. package/dist/chunks/{chunk-Z4HXW6ZH.js → chunk-ZWBQ4RRK.js} +24 -10
  48. package/dist/cli/figure.js +31 -30
  49. package/dist/cli/fold.js +6 -6
  50. package/dist/deletionEdges.js +2 -2
  51. package/dist/figure.js +27 -26
  52. package/dist/figureData.js +25 -24
  53. package/dist/figureScene.js +18 -17
  54. package/dist/figureSettings.js +6 -6
  55. package/dist/foldVariants.js +2 -2
  56. package/dist/genes/genePins.js +3 -3
  57. package/dist/graphLabels.js +4 -4
  58. package/dist/index.js +45 -44
  59. package/dist/labelLayout.js +8 -8
  60. package/dist/layout/forceCache.js +6 -6
  61. package/dist/layout/mergeRuns.js +2 -2
  62. package/dist/layout/orientToReference.js +2 -2
  63. package/dist/layout/tubeMapLayout.js +9 -9
  64. package/dist/layout/walkRowDraw.js +9 -8
  65. package/dist/layout/walkRowLayout.js +3 -3
  66. package/dist/layout/walkRowRuns.js +1 -1
  67. package/dist/layout/walkRows.js +2 -2
  68. package/dist/layout/walkStrip.js +13 -12
  69. package/dist/layoutModes.js +11 -11
  70. package/dist/pathColors.js +5 -5
  71. package/dist/pipeline.js +5 -5
  72. package/dist/referenceStrip.js +9 -8
  73. package/dist/renderer/GeometryBuilder.js +8 -7
  74. package/dist/renderer/walkLanes.js +46 -0
  75. package/dist/tubeMap/axis.js +5 -5
  76. package/dist/tubeMap/bundle.js +10 -10
  77. package/dist/tubeMap/coarsen.js +10 -10
  78. package/dist/tubeMap/deviations.js +11 -11
  79. package/dist/tubeMap/draw.js +5 -5
  80. package/dist/tubeMap/genes.js +6 -6
  81. package/dist/tubeMap/nodeColors.js +9 -8
  82. package/dist/tubeMap/reads.js +2 -2
  83. package/dist/types/figureData.d.ts +22 -0
  84. package/dist/types/renderer/types.d.ts +20 -0
  85. package/dist/types/renderer/walkLanes.d.ts +76 -0
  86. package/dist/types/util/geometry.d.ts +13 -1
  87. package/dist/types/version.d.ts +1 -1
  88. package/dist/types/walkEncoding.d.ts +9 -5
  89. package/dist/types/walkHighlight.d.ts +3 -0
  90. package/dist/util/SpatialIndex.js +4 -4
  91. package/dist/util/edgeCurves.js +3 -3
  92. package/dist/util/geometry.js +7 -1
  93. package/dist/util/hitDetection.js +5 -5
  94. package/dist/version.js +1 -1
  95. package/dist/viewport.js +6 -6
  96. package/dist/walkEncoding.js +13 -10
  97. package/dist/walkHighlight.js +10 -9
  98. package/dist/walkKey.js +5 -5
  99. package/package.json +1 -1
package/dist/viewport.js CHANGED
@@ -5,10 +5,10 @@ import {
5
5
  screenToLayout,
6
6
  viewportOf,
7
7
  zoomAbout
8
- } from "./chunks/chunk-F4CDC72I.js";
9
- import "./chunks/chunk-XKPXOIWD.js";
8
+ } from "./chunks/chunk-3DHGSHC3.js";
9
+ import "./chunks/chunk-JVT3XTKN.js";
10
10
  import "./chunks/chunk-OPPVSPEF.js";
11
- import "./chunks/chunk-ZZZ6NVLW.js";
11
+ import "./chunks/chunk-NAYS472K.js";
12
12
  import "./chunks/chunk-CKUVEHSS.js";
13
13
  import "./chunks/chunk-VPE4AYP7.js";
14
14
  import "./chunks/chunk-TUMJNAOL.js";
@@ -18,13 +18,13 @@ import "./chunks/chunk-7L7MN2OM.js";
18
18
  import "./chunks/chunk-VX656OAZ.js";
19
19
  import "./chunks/chunk-VSSIYQYF.js";
20
20
  import "./chunks/chunk-LG2UK4MB.js";
21
- import "./chunks/chunk-2VMKQKVO.js";
21
+ import "./chunks/chunk-HNNP5QUN.js";
22
22
  import "./chunks/chunk-HKYXWZQS.js";
23
23
  import "./chunks/chunk-34BOZKIE.js";
24
- import "./chunks/chunk-P276TWPM.js";
24
+ import "./chunks/chunk-3GORESBG.js";
25
25
  import "./chunks/chunk-TLWXLNLY.js";
26
26
  import "./chunks/chunk-3YBP46PB.js";
27
- import "./chunks/chunk-VACK24HF.js";
27
+ import "./chunks/chunk-JJV2GT2Z.js";
28
28
  import "./chunks/chunk-CPMHA4W5.js";
29
29
  import "./chunks/chunk-ZPZ7GNBT.js";
30
30
  import "./chunks/chunk-BSOZW3FC.js";
package/dist/walkEncoding.js CHANGED
@@ -8,23 +8,25 @@ import {
8
8
  resolveEncoding,
9
9
  schemeColor,
10
10
  schemeCss,
11
- schemeRgb
12
- } from "./chunks/chunk-6RB5ZQ34.js";
13
- import "./chunks/chunk-VXKL2ZLR.js";
11
+ schemeRgb,
12
+ splitFamilies
13
+ } from "./chunks/chunk-UEWIGD52.js";
14
+ import "./chunks/chunk-GDZQFELP.js";
15
+ import "./chunks/chunk-3BDQQTXY.js";
14
16
  import "./chunks/chunk-G2FD7S3C.js";
15
17
  import "./chunks/chunk-GQZVR5DW.js";
16
- import "./chunks/chunk-33KUO34R.js";
17
- import "./chunks/chunk-GD6RUZU5.js";
18
+ import "./chunks/chunk-P2GJBFNA.js";
19
+ import "./chunks/chunk-VQ353UDK.js";
18
20
  import "./chunks/chunk-ZANALBSX.js";
19
21
  import "./chunks/chunk-VX656OAZ.js";
20
- import "./chunks/chunk-N73RA4DR.js";
22
+ import "./chunks/chunk-AURNOR27.js";
21
23
  import "./chunks/chunk-HMXCN6PG.js";
22
24
  import "./chunks/chunk-AB35TJST.js";
23
- import "./chunks/chunk-2VMKQKVO.js";
24
- import "./chunks/chunk-P276TWPM.js";
25
+ import "./chunks/chunk-HNNP5QUN.js";
26
+ import "./chunks/chunk-3GORESBG.js";
25
27
  import "./chunks/chunk-TLWXLNLY.js";
26
28
  import "./chunks/chunk-3YBP46PB.js";
27
- import "./chunks/chunk-VACK24HF.js";
29
+ import "./chunks/chunk-JJV2GT2Z.js";
28
30
  import "./chunks/chunk-CPMHA4W5.js";
29
31
  import "./chunks/chunk-ZPZ7GNBT.js";
30
32
  import "./chunks/chunk-BSOZW3FC.js";
@@ -41,5 +43,6 @@ export {
41
43
  resolveEncoding,
42
44
  schemeColor,
43
45
  schemeCss,
44
- schemeRgb
46
+ schemeRgb,
47
+ splitFamilies
45
48
  };
package/dist/walkHighlight.js CHANGED
@@ -2,24 +2,25 @@ import {
2
2
  facetLifts,
3
3
  walkHighlight,
4
4
  walkLift
5
- } from "./chunks/chunk-Z4HXW6ZH.js";
6
- import "./chunks/chunk-6RB5ZQ34.js";
7
- import "./chunks/chunk-VXKL2ZLR.js";
5
+ } from "./chunks/chunk-ZWBQ4RRK.js";
6
+ import "./chunks/chunk-UEWIGD52.js";
7
+ import "./chunks/chunk-GDZQFELP.js";
8
+ import "./chunks/chunk-3BDQQTXY.js";
8
9
  import "./chunks/chunk-G2FD7S3C.js";
9
10
  import "./chunks/chunk-GQZVR5DW.js";
10
- import "./chunks/chunk-33KUO34R.js";
11
- import "./chunks/chunk-GD6RUZU5.js";
11
+ import "./chunks/chunk-P2GJBFNA.js";
12
+ import "./chunks/chunk-VQ353UDK.js";
12
13
  import "./chunks/chunk-ZANALBSX.js";
13
14
  import "./chunks/chunk-VX656OAZ.js";
14
15
  import "./chunks/chunk-LG2UK4MB.js";
15
- import "./chunks/chunk-N73RA4DR.js";
16
+ import "./chunks/chunk-AURNOR27.js";
16
17
  import "./chunks/chunk-HMXCN6PG.js";
17
18
  import "./chunks/chunk-AB35TJST.js";
18
- import "./chunks/chunk-2VMKQKVO.js";
19
- import "./chunks/chunk-P276TWPM.js";
19
+ import "./chunks/chunk-HNNP5QUN.js";
20
+ import "./chunks/chunk-3GORESBG.js";
20
21
  import "./chunks/chunk-TLWXLNLY.js";
21
22
  import "./chunks/chunk-3YBP46PB.js";
22
- import "./chunks/chunk-VACK24HF.js";
23
+ import "./chunks/chunk-JJV2GT2Z.js";
23
24
  import "./chunks/chunk-CPMHA4W5.js";
24
25
  import "./chunks/chunk-ZPZ7GNBT.js";
25
26
  import "./chunks/chunk-BSOZW3FC.js";
package/dist/walkKey.js CHANGED
@@ -2,16 +2,16 @@ import {
2
2
  rangeText,
3
3
  walkKey,
4
4
  walkPosition
5
- } from "./chunks/chunk-SG7VQB4F.js";
5
+ } from "./chunks/chunk-IZKM4NY7.js";
6
6
  import "./chunks/chunk-LG2UK4MB.js";
7
- import "./chunks/chunk-N73RA4DR.js";
7
+ import "./chunks/chunk-AURNOR27.js";
8
8
  import "./chunks/chunk-HMXCN6PG.js";
9
9
  import "./chunks/chunk-AB35TJST.js";
10
- import "./chunks/chunk-2VMKQKVO.js";
11
- import "./chunks/chunk-P276TWPM.js";
10
+ import "./chunks/chunk-HNNP5QUN.js";
11
+ import "./chunks/chunk-3GORESBG.js";
12
12
  import "./chunks/chunk-TLWXLNLY.js";
13
13
  import "./chunks/chunk-3YBP46PB.js";
14
- import "./chunks/chunk-VACK24HF.js";
14
+ import "./chunks/chunk-JJV2GT2Z.js";
15
15
  import "./chunks/chunk-CPMHA4W5.js";
16
16
  import "./chunks/chunk-ZPZ7GNBT.js";
17
17
  import "./chunks/chunk-BSOZW3FC.js";
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/bandage-core",
3
- "version": "11.7.3",
3
+ "version": "11.9.0",
4
4
  "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
5
5
  "license": "GPL-3.0-or-later",
6
6
  "repository": {