@jbrowse/bandage-core 11.3.0 → 11.5.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/bubbles/superbubbles.js +3 -3
- package/dist/chunks/{chunk-T35BSLW5.js → chunk-3BCVMZUT.js} +8 -8
- package/dist/chunks/{chunk-3HGYGISG.js → chunk-3U3C4PRK.js} +1 -1
- package/dist/chunks/{chunk-TEXAKEJX.js → chunk-5F4D35U5.js} +2 -2
- package/dist/chunks/{chunk-M75QPZNJ.js → chunk-64FCX424.js} +29 -18
- package/dist/chunks/{chunk-XVS52NMZ.js → chunk-7EDGWT67.js} +1 -1
- package/dist/chunks/{chunk-PNM6Z3IE.js → chunk-A32ZKSHN.js} +2 -2
- package/dist/chunks/{chunk-BXLLMWC3.js → chunk-AKLSY4GD.js} +1 -1
- package/dist/chunks/{chunk-3UST3ZQE.js → chunk-EGBBIXTG.js} +1 -1
- package/dist/chunks/{chunk-TZLEHZVC.js → chunk-FWSERUJV.js} +1 -1
- package/dist/chunks/{chunk-TABI4JEU.js → chunk-HN3WHMPJ.js} +1 -1
- package/dist/chunks/{chunk-JDZ5GTZT.js → chunk-IOWLTUEB.js} +1 -1
- package/dist/chunks/{chunk-TUQKGAK3.js → chunk-J3JODFDF.js} +1 -1
- package/dist/chunks/chunk-JOLLU34X.js +21 -0
- package/dist/chunks/{chunk-SWCULW6S.js → chunk-JOWKKQAL.js} +13 -10
- package/dist/chunks/{chunk-EFD753MS.js → chunk-K5LDBMLX.js} +1 -1
- package/dist/chunks/{chunk-SLDCKMIP.js → chunk-KOJKFNCW.js} +8 -8
- package/dist/chunks/{chunk-B5ARSBOH.js → chunk-NJGYLYU7.js} +7 -6
- package/dist/chunks/{chunk-RNNYRNDU.js → chunk-PQBALYSO.js} +13 -13
- package/dist/chunks/{chunk-3LZ334X4.js → chunk-RK3HRRCW.js} +1 -1
- package/dist/chunks/{chunk-XZ6PQBU6.js → chunk-TRGKMLXT.js} +1 -1
- package/dist/chunks/{chunk-TJOOHTJ6.js → chunk-VD4MLYEK.js} +1 -1
- package/dist/chunks/{chunk-DR24UTRS.js → chunk-VQ7474EH.js} +5 -3
- package/dist/chunks/{chunk-7O7EGTYG.js → chunk-WC6HX6GJ.js} +1 -1
- package/dist/chunks/{chunk-REOWLPH4.js → chunk-WG5D2H7X.js} +4 -4
- package/dist/chunks/{chunk-XEWPWCML.js → chunk-WLR4KJVI.js} +1 -1
- package/dist/chunks/{chunk-CE6ZIKJX.js → chunk-XKZ56L5A.js} +1 -1
- package/dist/cli/figure.js +21 -21
- package/dist/cli/fold.js +3 -3
- package/dist/figure.js +17 -17
- package/dist/figureData.js +18 -18
- package/dist/figureScene.js +12 -12
- package/dist/figureSettings.js +4 -4
- package/dist/gbzCut.js +1 -1
- package/dist/gfa/graphTables.js +1 -1
- package/dist/index.js +65 -59
- package/dist/layout/forceCache.js +4 -4
- package/dist/layout/tubeMapLayout.js +4 -4
- package/dist/layout/walkRowDraw.js +2 -2
- package/dist/layout/walkRowLayout.js +4 -4
- package/dist/layout/walkRowRuns.js +2 -2
- package/dist/layout/walkRows.js +3 -3
- package/dist/layout/walkStrip.js +7 -7
- package/dist/layoutModes.js +6 -6
- package/dist/locus.js +8 -0
- package/dist/pipeline.js +3 -3
- package/dist/referenceStrip.js +2 -2
- package/dist/renderer/GeometryBuilder.js +5 -3
- package/dist/tubeMap/bundle.js +5 -5
- package/dist/tubeMap/coarsen.js +5 -5
- package/dist/tubeMap/deviations.js +5 -5
- package/dist/tubeMap/draw.js +4 -4
- package/dist/tubeMap/nodeColors.js +2 -2
- package/dist/types/gfa/graphTables.d.ts +3 -2
- package/dist/types/index.d.ts +1 -0
- package/dist/types/locus.d.ts +10 -0
- package/dist/types/renderer/GeometryBuilder.d.ts +1 -0
- package/dist/types/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/dist/viewport.js +4 -4
- package/dist/walkEncoding.js +2 -2
- package/dist/walkHighlight.js +3 -3
- package/package.json +1 -1
- package/dist/chunks/{chunk-2Q22S52W.js → chunk-2E25TX4G.js} +6 -6
package/dist/cli/figure.js
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package/dist/cli/fold.js
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CHANGED
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CHANGED
|
@@ -1,16 +1,16 @@
|
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|
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|
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|
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|
|
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|
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|
package/dist/gbzCut.js
CHANGED
package/dist/gfa/graphTables.js
CHANGED
package/dist/index.js
CHANGED
|
@@ -1,25 +1,35 @@
|
|
|
1
1
|
import {
|
|
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|
wheelZoomFactor
|
|
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3
|
} from "./chunks/chunk-TDQLINVI.js";
|
|
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|
+
import {
|
|
5
|
+
drawTubeMapGenes,
|
|
6
|
+
tubeMapGenes
|
|
7
|
+
} from "./chunks/chunk-6EOB6ANX.js";
|
|
4
8
|
import {
|
|
5
9
|
tubeMapNodeColors
|
|
6
|
-
} from "./chunks/chunk-
|
|
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|
+
} from "./chunks/chunk-7EDGWT67.js";
|
|
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|
import {
|
|
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12
|
bundleRoutes
|
|
9
|
-
} from "./chunks/chunk-
|
|
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|
+
} from "./chunks/chunk-VD4MLYEK.js";
|
|
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14
|
import {
|
|
11
15
|
connectorAt,
|
|
12
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|
drawLitConnector,
|
|
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17
|
drawTubeMapConnectors,
|
|
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18
|
tubeMapConnectors
|
|
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|
} from "./chunks/chunk-2ZT7ZF7A.js";
|
|
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|
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import {
|
|
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|
+
drawTubeMapRuler,
|
|
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|
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referenceBoxes,
|
|
23
|
+
rulerBoxes,
|
|
24
|
+
tubeX
|
|
25
|
+
} from "./chunks/chunk-HSVFCA2J.js";
|
|
16
26
|
import {
|
|
17
27
|
drawTubeMap,
|
|
18
28
|
drawTubeMapHighlight,
|
|
19
29
|
tubeMapMismatchAt,
|
|
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30
|
tubeMapPicture,
|
|
21
31
|
tubeMapTrackAt
|
|
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|
-
} from "./chunks/chunk-
|
|
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|
+
} from "./chunks/chunk-3U3C4PRK.js";
|
|
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|
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|
|
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34
|
import {
|
|
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35
|
tubeMapFrame,
|
|
@@ -29,16 +39,6 @@ import {
|
|
|
29
39
|
referenceKnots,
|
|
30
40
|
warpX
|
|
31
41
|
} from "./chunks/chunk-MYDHU2UV.js";
|
|
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|
-
import {
|
|
33
|
-
drawTubeMapGenes,
|
|
34
|
-
tubeMapGenes
|
|
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|
-
} from "./chunks/chunk-6EOB6ANX.js";
|
|
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|
-
import {
|
|
37
|
-
drawTubeMapRuler,
|
|
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|
-
referenceBoxes,
|
|
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|
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rulerBoxes,
|
|
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|
-
tubeX
|
|
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|
-
} from "./chunks/chunk-HSVFCA2J.js";
|
|
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42
|
import {
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|
43
43
|
ribbonJoin,
|
|
44
44
|
sharedRowOrder,
|
|
@@ -47,14 +47,24 @@ import {
|
|
|
47
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|
} from "./chunks/chunk-UFUSPK2A.js";
|
|
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48
|
import {
|
|
49
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|
createForceLayoutCache
|
|
50
|
-
} from "./chunks/chunk-
|
|
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|
+
} from "./chunks/chunk-AKLSY4GD.js";
|
|
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51
|
import {
|
|
52
52
|
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|
|
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53
|
superbubblesFromGraph
|
|
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|
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} from "./chunks/chunk-
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|
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|
+
} from "./chunks/chunk-2E25TX4G.js";
|
|
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|
+
import {
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|
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|
+
bubbleHalos
|
|
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|
+
} from "./chunks/chunk-E4ZM4OOJ.js";
|
|
55
58
|
import {
|
|
56
59
|
bubblesFromGraph
|
|
57
60
|
} from "./chunks/chunk-RFG42VIO.js";
|
|
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|
+
import {
|
|
62
|
+
BUBBLE_KIND_COLORS,
|
|
63
|
+
BUBBLE_KIND_NAMES,
|
|
64
|
+
bubbleSegmentIds,
|
|
65
|
+
classifyBubble
|
|
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|
+
} from "./chunks/chunk-A4JDEUAI.js";
|
|
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|
+
import "./chunks/chunk-FX4RDMDN.js";
|
|
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68
|
import {
|
|
59
69
|
bubbleSubgraph
|
|
60
70
|
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|
|
@@ -67,41 +77,26 @@ import {
|
|
|
67
77
|
genesFromText,
|
|
68
78
|
mergeOverlappingByName
|
|
69
79
|
} from "./chunks/chunk-G6UIYQZR.js";
|
|
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|
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import {
|
|
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|
-
bubbleHalos
|
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|
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} from "./chunks/chunk-E4ZM4OOJ.js";
|
|
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|
-
import {
|
|
74
|
-
BUBBLE_KIND_COLORS,
|
|
75
|
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BUBBLE_KIND_NAMES,
|
|
76
|
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|
|
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|
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|
|
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|
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} from "./chunks/chunk-A4JDEUAI.js";
|
|
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|
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import "./chunks/chunk-FX4RDMDN.js";
|
|
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|
import {
|
|
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81
|
REFERENCE_STRIP_ZONE_PX,
|
|
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|
drawReferenceStrip,
|
|
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83
|
referenceStripBlocks,
|
|
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|
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|
|
85
|
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} from "./chunks/chunk-
|
|
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|
+
} from "./chunks/chunk-EGBBIXTG.js";
|
|
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|
import {
|
|
87
87
|
LAYOUT_QUALITIES
|
|
88
88
|
} from "./chunks/chunk-K5SIJGAE.js";
|
|
89
|
+
import {
|
|
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|
+
formatLocus,
|
|
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|
+
parseLocus
|
|
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|
+
} from "./chunks/chunk-JOLLU34X.js";
|
|
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93
|
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|
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94
|
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|
|
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95
|
regionLabel
|
|
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96
|
} from "./chunks/chunk-AZFVORTC.js";
|
|
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|
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|
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|
|
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|
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|
|
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|
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|
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Canvas2DRenderer
|
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|
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|
|
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|
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import {
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|
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|
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|
|
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|
-
} from "./chunks/chunk-RBCE2OQH.js";
|
|
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|
-
import {
|
|
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|
-
svgCanvas
|
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|
-
} from "./chunks/chunk-V4YML3GR.js";
|
|
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|
+
} from "./chunks/chunk-PQBALYSO.js";
|
|
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100
|
import {
|
|
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101
|
WALK_STRIP_CEILING_PX,
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102
|
cutsWholeWalks,
|
|
@@ -113,7 +108,16 @@ import {
|
|
|
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108
|
walkStripApplies,
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|
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109
|
walkStripFrame,
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|
walkStripLabelsTree
|
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|
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} from "./chunks/chunk-
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|
+
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|
|
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|
+
import {
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|
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|
+
Canvas2DRenderer
|
|
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|
+
} from "./chunks/chunk-EJRJAAN7.js";
|
|
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|
+
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|
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|
+
getDpr
|
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|
+
} from "./chunks/chunk-RBCE2OQH.js";
|
|
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|
+
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|
+
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|
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|
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|
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122
|
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|
|
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|
CALL_TICK,
|
|
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|
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|
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146
|
walkRowsKeyTree,
|
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walkRowsTree
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|
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|
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|
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|
import {
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|
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|
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|
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|
|
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|
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|
import {
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|
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|
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|
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|
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|
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|
|
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|
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|
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|
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|
layoutEngine
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|
@@ -175,8 +179,8 @@ import {
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|
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|
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|
layoutModeByValue,
|
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|
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|
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} from "./chunks/chunk-
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|
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import "./chunks/chunk-
|
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|
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|
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|
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|
@@ -189,7 +193,7 @@ import {
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|
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cutGbzRegion,
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|
openGbz,
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|
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|
parseRegion
|
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|
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} from "./chunks/chunk-
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|
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|
+
} from "./chunks/chunk-J3JODFDF.js";
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|
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|
import {
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|
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|
cutWindowGFA,
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|
@@ -205,7 +209,7 @@ import {
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|
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|
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|
import {
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|
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|
|
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|
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} from "./chunks/chunk-
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|
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} from "./chunks/chunk-WLR4KJVI.js";
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|
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|
contains,
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|
@@ -213,8 +217,8 @@ import {
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|
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|
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import "./chunks/chunk-
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+
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|
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|
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|
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|
} from "./chunks/chunk-LOCJN3BZ.js";
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|
@@ -222,7 +226,7 @@ import {
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} from "./chunks/chunk-
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|
+
} from "./chunks/chunk-VQ7474EH.js";
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|
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|
import {
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|
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|
|
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|
WALK_SCHEMES,
|
|
@@ -230,17 +234,17 @@ import {
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resolveEncoding,
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|
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} from "./chunks/chunk-
|
|
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|
+
} from "./chunks/chunk-HN3WHMPJ.js";
|
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|
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|
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|
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|
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|
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|
+
} from "./chunks/chunk-JOWKKQAL.js";
|
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|
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|
|
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|
import {
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|
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|
|
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|
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|
|
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|
walkPosition
|
|
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|
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|
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|
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|
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|
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buildGeometry,
|
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|
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computeReferenceRamp
|
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