@jbrowse/bandage-core 11.2.0 → 11.4.0

package/dist/index.js

@@ -1,6 +1,12 @@
 import {
   wheelZoomFactor
 } from "./chunks/chunk-TDQLINVI.js";
+import {
+  tubeMapNodeColors
+} from "./chunks/chunk-G3I4TCEZ.js";
+import {
+  bundleRoutes
+} from "./chunks/chunk-TJOOHTJ6.js";
 import {
   connectorAt,
   drawLitConnector,
@@ -13,7 +19,8 @@ import {
   tubeMapMismatchAt,
   tubeMapPicture,
   tubeMapTrackAt
-} from "./chunks/chunk-5GRF7PJX.js";
+} from "./chunks/chunk-3HGYGISG.js";
+import "./chunks/chunk-BX4AUMZE.js";
 import {
   tubeMapFrame,
   tubeMapNodeAt
@@ -26,10 +33,6 @@ import {
   drawTubeMapGenes,
   tubeMapGenes
 } from "./chunks/chunk-6EOB6ANX.js";
-import "./chunks/chunk-BX4AUMZE.js";
-import {
-  tubeMapNodeColors
-} from "./chunks/chunk-XVS52NMZ.js";
 import {
   drawTubeMapRuler,
   referenceBoxes,
@@ -37,11 +40,14 @@ import {
   tubeX
 } from "./chunks/chunk-HSVFCA2J.js";
 import {
-  bundleRoutes
-} from "./chunks/chunk-C2TAJTUO.js";
+  ribbonJoin,
+  sharedRowOrder,
+  walkRowBlocks,
+  walkRowLinks
+} from "./chunks/chunk-UFUSPK2A.js";
 import {
   createForceLayoutCache
-} from "./chunks/chunk-RNYPCQZ3.js";
+} from "./chunks/chunk-BXLLMWC3.js";
 import {
   graphBubbles,
   superbubblesFromGraph
@@ -76,7 +82,7 @@ import {
   drawReferenceStrip,
   referenceStripBlocks,
   stripBlockAt
-} from "./chunks/chunk-3UST3ZQE.js";
+} from "./chunks/chunk-6VVGFQ7S.js";
 import {
   LAYOUT_QUALITIES
 } from "./chunks/chunk-K5SIJGAE.js";
@@ -86,7 +92,13 @@ import {
 } from "./chunks/chunk-AZFVORTC.js";
 import {
   figureSvg
-} from "./chunks/chunk-VWT3WZRQ.js";
+} from "./chunks/chunk-6YJESZND.js";
+import {
+  Canvas2DRenderer
+} from "./chunks/chunk-EJRJAAN7.js";
+import {
+  getDpr
+} from "./chunks/chunk-RBCE2OQH.js";
 import {
   svgCanvas
 } from "./chunks/chunk-V4YML3GR.js";
@@ -101,7 +113,7 @@ import {
   walkStripApplies,
   walkStripFrame,
   walkStripLabelsTree
-} from "./chunks/chunk-ZU54STUX.js";
+} from "./chunks/chunk-I4BYUNJN.js";
 import {
   BAR_PX,
   CALL_TICK,
@@ -129,13 +141,7 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "./chunks/chunk-XZ6PQBU6.js";
-import {
-  Canvas2DRenderer
-} from "./chunks/chunk-EJRJAAN7.js";
-import {
-  getDpr
-} from "./chunks/chunk-RBCE2OQH.js";
+} from "./chunks/chunk-VIQL7GZ4.js";
 import {
   EXON_COLOR,
   exonOutlineTree,
@@ -159,7 +165,7 @@ import {
 import {
   figureData,
   gfaFigureData
-} from "./chunks/chunk-TREAOGDV.js";
+} from "./chunks/chunk-N7G5ROIV.js";
 import {
   LAYOUT_ENGINES,
   layoutEngine
@@ -169,8 +175,8 @@ import {
   LAYOUT_MODES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-VQT3A57T.js";
-import "./chunks/chunk-A7VSP7MQ.js";
+} from "./chunks/chunk-TEXAKEJX.js";
+import "./chunks/chunk-3LZ334X4.js";
 import "./chunks/chunk-A7H753BA.js";
 import "./chunks/chunk-GJU6BJJA.js";
 import "./chunks/chunk-GJLZ2MKE.js";
@@ -199,7 +205,7 @@ import {
 } from "./chunks/chunk-77EGQQJU.js";
 import {
   version
-} from "./chunks/chunk-WAST7UVB.js";
+} from "./chunks/chunk-QM7KEWWT.js";
 import {
   axisScaleOf,
   contains,
@@ -207,8 +213,8 @@ import {
   screenToLayout,
   viewportOf,
   zoomAbout
-} from "./chunks/chunk-AI5PTOSV.js";
-import "./chunks/chunk-S2PUF4SX.js";
+} from "./chunks/chunk-CE6ZIKJX.js";
+import "./chunks/chunk-JQ52XYD2.js";
 import {
   layoutGeometryInputs
 } from "./chunks/chunk-LOCJN3BZ.js";
@@ -216,7 +222,7 @@ import {
   facetLifts,
   walkHighlight,
   walkLift
-} from "./chunks/chunk-DR24UTRS.js";
+} from "./chunks/chunk-FRTYQQDI.js";
 import {
   WALK_FIELDS,
   WALK_SCHEMES,
@@ -224,7 +230,7 @@ import {
   encodingSwatchCss,
   resolveEncoding,
   schemeCss
-} from "./chunks/chunk-TABI4JEU.js";
+} from "./chunks/chunk-GM7M25NW.js";
 import {
   rangeText,
   walkKey,
@@ -233,7 +239,7 @@ import {
 import {
   buildGeometry,
   computeReferenceRamp
-} from "./chunks/chunk-SWCULW6S.js";
+} from "./chunks/chunk-XSF4RQRP.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import {
   RAMP_GRADIENT_CSS,
@@ -245,12 +251,18 @@ import {
 import "./chunks/chunk-WA5WNP6V.js";
 import {
   walkRowLabels,
+  walkRowLayoutOf,
   walkRowsExtent
-} from "./chunks/chunk-QR5XR5XL.js";
+} from "./chunks/chunk-TZLEHZVC.js";
 import {
   filterSamples,
   walkRows
-} from "./chunks/chunk-5DHOFF4C.js";
+} from "./chunks/chunk-JDZ5GTZT.js";
+import {
+  runAt,
+  walkRowRuns,
+  walkRowsOf
+} from "./chunks/chunk-M75QPZNJ.js";
 import {
   pathColorsLegible,
   pathLegend,
@@ -266,7 +278,7 @@ import {
 import {
   FIGURE_DEFAULTS,
   figureSpecSettings
-} from "./chunks/chunk-W6EXQDV5.js";
+} from "./chunks/chunk-EFD753MS.js";
 import {
   ENGINE_DEFAULTS,
   FIT_PADDING,
@@ -279,7 +291,7 @@ import {
   forceLayout,
   layoutExtent,
   loadGraph
-} from "./chunks/chunk-KDU4EF66.js";
+} from "./chunks/chunk-REOWLPH4.js";
 import "./chunks/chunk-3PZSBNLI.js";
 import "./chunks/chunk-CKUVEHSS.js";
 import "./chunks/chunk-OPPVSPEF.js";
@@ -290,7 +302,7 @@ import "./chunks/chunk-5I3K4R2G.js";
 import {
   graphFromTables,
   graphTablesGFA
-} from "./chunks/chunk-3XSRT7RQ.js";
+} from "./chunks/chunk-B5ARSBOH.js";
 import "./chunks/chunk-B5X2RLJG.js";
 import "./chunks/chunk-VX656OAZ.js";
 import {
@@ -527,15 +539,18 @@ export {
   resolveColorScheme,
   resolveEncoding,
   resolveReferenceSample,
+  ribbonJoin,
   rowGeneBoxes,
   rowPitch,
   rowSpan,
   rulerBoxes,
+  runAt,
   runPaint,
   schemeCss,
   screenToLayout,
   segmentAt,
   serializeEl,
+  sharedRowOrder,
   stopTag,
   stressLayout,
   stripBlockAt,
@@ -562,12 +577,17 @@ export {
   walkLift,
   walkMarksTree,
   walkPosition,
+  walkRowBlocks,
   walkRowLabels,
+  walkRowLayoutOf,
+  walkRowLinks,
   walkRowReadout,
+  walkRowRuns,
   walkRows,
   walkRowsExtent,
   walkRowsKey,
   walkRowsKeyTree,
+  walkRowsOf,
   walkRowsTree,
   walkStripApplies,
   walkStripFrame,

package/dist/layout/forceCache.js

@@ -1,7 +1,7 @@
 import {
   createForceLayoutCache
-} from "../chunks/chunk-RNYPCQZ3.js";
-import "../chunks/chunk-KDU4EF66.js";
+} from "../chunks/chunk-BXLLMWC3.js";
+import "../chunks/chunk-REOWLPH4.js";
 import "../chunks/chunk-3PZSBNLI.js";
 import "../chunks/chunk-CKUVEHSS.js";
 import "../chunks/chunk-OPPVSPEF.js";
@@ -9,7 +9,7 @@ import "../chunks/chunk-VPE4AYP7.js";
 import "../chunks/chunk-FFHJGWDK.js";
 import "../chunks/chunk-QYBZZI5H.js";
 import "../chunks/chunk-5I3K4R2G.js";
-import "../chunks/chunk-3XSRT7RQ.js";
+import "../chunks/chunk-B5ARSBOH.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-VX656OAZ.js";
 import "../chunks/chunk-DZR37KXT.js";

package/dist/layout/tubeMapLayout.js

@@ -5,11 +5,13 @@ import {
   tubeMapLayout,
   tubeMapReferenceLayout,
   tubeMapTracks
-} from "../chunks/chunk-A7VSP7MQ.js";
+} from "../chunks/chunk-3LZ334X4.js";
 import "../chunks/chunk-A7H753BA.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-5DHOFF4C.js";
+import "../chunks/chunk-JDZ5GTZT.js";
+import "../chunks/chunk-M75QPZNJ.js";
 import "../chunks/chunk-3GP3KT5L.js";
+import "../chunks/chunk-B5ARSBOH.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";

package/dist/layout/walkRowDraw.js

@@ -29,9 +29,9 @@ import {
   walkRowsKey,
   walkRowsKeyTree,
   walkRowsTree
-} from "../chunks/chunk-XZ6PQBU6.js";
+} from "../chunks/chunk-VIQL7GZ4.js";
 import "../chunks/chunk-H2H4Y3TV.js";
-import "../chunks/chunk-SWCULW6S.js";
+import "../chunks/chunk-XSF4RQRP.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-GQZVR5DW.js";
 import "../chunks/chunk-WA5WNP6V.js";

package/dist/layout/walkRowLayout.js

@@ -3,9 +3,12 @@ import {
   longestBar,
   walkRowLabels,
   walkRowLayout,
+  walkRowLayoutOf,
   walkRowsExtent
-} from "../chunks/chunk-QR5XR5XL.js";
-import "../chunks/chunk-5DHOFF4C.js";
+} from "../chunks/chunk-TZLEHZVC.js";
+import "../chunks/chunk-JDZ5GTZT.js";
+import "../chunks/chunk-M75QPZNJ.js";
+import "../chunks/chunk-B5ARSBOH.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";
@@ -19,5 +22,6 @@ export {
   longestBar,
   walkRowLabels,
   walkRowLayout,
+  walkRowLayoutOf,
   walkRowsExtent
 };

package/dist/layout/walkRowLinks.js

@@ -0,0 +1,12 @@
+import {
+  ribbonJoin,
+  sharedRowOrder,
+  walkRowBlocks,
+  walkRowLinks
+} from "../chunks/chunk-UFUSPK2A.js";
+export {
+  ribbonJoin,
+  sharedRowOrder,
+  walkRowBlocks,
+  walkRowLinks
+};

package/dist/layout/walkRowRuns.js

@@ -0,0 +1,20 @@
+import {
+  referenceWalkName,
+  runAt,
+  walkRowRuns,
+  walkRowsOf
+} from "../chunks/chunk-M75QPZNJ.js";
+import "../chunks/chunk-B5ARSBOH.js";
+import "../chunks/chunk-B5X2RLJG.js";
+import "../chunks/chunk-EIY2SKD3.js";
+import "../chunks/chunk-ZPZ7GNBT.js";
+import "../chunks/chunk-BSOZW3FC.js";
+import "../chunks/chunk-RJWPJCIB.js";
+import "../chunks/chunk-HOAIOEI7.js";
+import "../chunks/chunk-4XWZNPQ2.js";
+export {
+  referenceWalkName,
+  runAt,
+  walkRowRuns,
+  walkRowsOf
+};

package/dist/layout/walkRows.js

@@ -1,8 +1,11 @@
 import {
   filterSamples,
-  referenceWalkName,
   walkRows
-} from "../chunks/chunk-5DHOFF4C.js";
+} from "../chunks/chunk-JDZ5GTZT.js";
+import {
+  referenceWalkName
+} from "../chunks/chunk-M75QPZNJ.js";
+import "../chunks/chunk-B5ARSBOH.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";

package/dist/layout/walkStrip.js

@@ -9,19 +9,21 @@ import {
   walkStripApplies,
   walkStripFrame,
   walkStripLabelsTree
-} from "../chunks/chunk-ZU54STUX.js";
+} from "../chunks/chunk-I4BYUNJN.js";
 import {
   LABELLED_ROW_PX
-} from "../chunks/chunk-XZ6PQBU6.js";
+} from "../chunks/chunk-VIQL7GZ4.js";
 import "../chunks/chunk-H2H4Y3TV.js";
-import "../chunks/chunk-SWCULW6S.js";
+import "../chunks/chunk-XSF4RQRP.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-GQZVR5DW.js";
 import "../chunks/chunk-WA5WNP6V.js";
-import "../chunks/chunk-QR5XR5XL.js";
-import "../chunks/chunk-5DHOFF4C.js";
+import "../chunks/chunk-TZLEHZVC.js";
+import "../chunks/chunk-JDZ5GTZT.js";
+import "../chunks/chunk-M75QPZNJ.js";
 import "../chunks/chunk-3GP3KT5L.js";
 import "../chunks/chunk-CRCD3ODN.js";
+import "../chunks/chunk-B5ARSBOH.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-VX656OAZ.js";
 import "../chunks/chunk-EIY2SKD3.js";

package/dist/layoutModes.js

@@ -4,8 +4,8 @@ import {
   LAYOUT_MODE_VALUES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-VQT3A57T.js";
-import "./chunks/chunk-A7VSP7MQ.js";
+} from "./chunks/chunk-TEXAKEJX.js";
+import "./chunks/chunk-3LZ334X4.js";
 import "./chunks/chunk-A7H753BA.js";
 import "./chunks/chunk-GJU6BJJA.js";
 import "./chunks/chunk-GJLZ2MKE.js";
@@ -13,9 +13,11 @@ import "./chunks/chunk-MYLAJDKB.js";
 import "./chunks/chunk-C44YRP5F.js";
 import "./chunks/chunk-UAFATXYA.js";
 import "./chunks/chunk-3GLG3ZLE.js";
-import "./chunks/chunk-QR5XR5XL.js";
-import "./chunks/chunk-5DHOFF4C.js";
+import "./chunks/chunk-TZLEHZVC.js";
+import "./chunks/chunk-JDZ5GTZT.js";
+import "./chunks/chunk-M75QPZNJ.js";
 import "./chunks/chunk-3GP3KT5L.js";
+import "./chunks/chunk-B5ARSBOH.js";
 import "./chunks/chunk-B5X2RLJG.js";
 import "./chunks/chunk-VX656OAZ.js";
 import "./chunks/chunk-EIY2SKD3.js";

package/dist/pipeline.js

@@ -11,7 +11,7 @@ import {
   forceLayout,
   layoutExtent,
   loadGraph
-} from "./chunks/chunk-KDU4EF66.js";
+} from "./chunks/chunk-REOWLPH4.js";
 import "./chunks/chunk-3PZSBNLI.js";
 import "./chunks/chunk-CKUVEHSS.js";
 import "./chunks/chunk-OPPVSPEF.js";
@@ -19,7 +19,7 @@ import "./chunks/chunk-VPE4AYP7.js";
 import "./chunks/chunk-FFHJGWDK.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-5I3K4R2G.js";
-import "./chunks/chunk-3XSRT7RQ.js";
+import "./chunks/chunk-B5ARSBOH.js";
 import "./chunks/chunk-B5X2RLJG.js";
 import "./chunks/chunk-VX656OAZ.js";
 import "./chunks/chunk-DZR37KXT.js";

package/dist/referenceStrip.js

@@ -7,8 +7,8 @@ import {
   stripBlockAt,
   stripOverhang,
   stripPixels
-} from "./chunks/chunk-3UST3ZQE.js";
-import "./chunks/chunk-SWCULW6S.js";
+} from "./chunks/chunk-6VVGFQ7S.js";
+import "./chunks/chunk-XSF4RQRP.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-GQZVR5DW.js";
 import "./chunks/chunk-WA5WNP6V.js";

package/dist/renderer/GeometryBuilder.js

@@ -10,7 +10,7 @@ import {
   endTangent,
   getNodeColor,
   hslToRgb
-} from "../chunks/chunk-SWCULW6S.js";
+} from "../chunks/chunk-XSF4RQRP.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import {
   REFERENCE_RAMP_MAX_HUE

package/dist/tubeMap/bundle.js

@@ -1,11 +1,13 @@
 import {
   bundleRoutes
-} from "../chunks/chunk-C2TAJTUO.js";
-import "../chunks/chunk-A7VSP7MQ.js";
+} from "../chunks/chunk-TJOOHTJ6.js";
+import "../chunks/chunk-3LZ334X4.js";
 import "../chunks/chunk-A7H753BA.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-5DHOFF4C.js";
+import "../chunks/chunk-JDZ5GTZT.js";
+import "../chunks/chunk-M75QPZNJ.js";
 import "../chunks/chunk-3GP3KT5L.js";
+import "../chunks/chunk-B5ARSBOH.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";

package/dist/tubeMap/coarsen.js

@@ -1,12 +1,14 @@
 import {
   coarsenTubeMap,
   lastAtMost
-} from "../chunks/chunk-QTDBOJJO.js";
-import "../chunks/chunk-A7VSP7MQ.js";
+} from "../chunks/chunk-7O7EGTYG.js";
+import "../chunks/chunk-3LZ334X4.js";
 import "../chunks/chunk-A7H753BA.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-5DHOFF4C.js";
+import "../chunks/chunk-JDZ5GTZT.js";
+import "../chunks/chunk-M75QPZNJ.js";
 import "../chunks/chunk-3GP3KT5L.js";
+import "../chunks/chunk-B5ARSBOH.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";

package/dist/tubeMap/deviations.js

@@ -1,15 +1,17 @@
 import {
   lastAtMost
-} from "../chunks/chunk-QTDBOJJO.js";
+} from "../chunks/chunk-7O7EGTYG.js";
 import {
   boxX,
   referenceBoxes
 } from "../chunks/chunk-HSVFCA2J.js";
-import "../chunks/chunk-A7VSP7MQ.js";
+import "../chunks/chunk-3LZ334X4.js";
 import "../chunks/chunk-A7H753BA.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-5DHOFF4C.js";
+import "../chunks/chunk-JDZ5GTZT.js";
+import "../chunks/chunk-M75QPZNJ.js";
 import "../chunks/chunk-3GP3KT5L.js";
+import "../chunks/chunk-B5ARSBOH.js";
 import {
   pathOrigin
 } from "../chunks/chunk-B5X2RLJG.js";

package/dist/tubeMap/draw.js

@@ -8,12 +8,14 @@ import {
   tubeMapMismatchAt,
   tubeMapPicture,
   tubeMapTrackAt
-} from "../chunks/chunk-5GRF7PJX.js";
-import "../chunks/chunk-MYDHU2UV.js";
+} from "../chunks/chunk-3HGYGISG.js";
 import "../chunks/chunk-BX4AUMZE.js";
+import "../chunks/chunk-MYDHU2UV.js";
 import "../chunks/chunk-A7H753BA.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-5DHOFF4C.js";
+import "../chunks/chunk-JDZ5GTZT.js";
+import "../chunks/chunk-M75QPZNJ.js";
+import "../chunks/chunk-B5ARSBOH.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";

package/dist/tubeMap/nodeColors.js

@@ -1,7 +1,7 @@
 import {
   tubeMapNodeColors
-} from "../chunks/chunk-XVS52NMZ.js";
-import "../chunks/chunk-SWCULW6S.js";
+} from "../chunks/chunk-G3I4TCEZ.js";
+import "../chunks/chunk-XSF4RQRP.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-GQZVR5DW.js";
 import "../chunks/chunk-WA5WNP6V.js";

package/dist/types/gfa/graphTables.d.ts

@@ -1,5 +1,5 @@
 import type { WalkStopTable } from './walkStops.js';
-import type { Graph } from '../types.js';
+import type { Graph, GraphPath } from '../types.js';
 /**
  * A graph as typed arrays, the shape a worker can hand across postMessage
  * without copying: what a GFA of S lines tagged LN/SN/SO/SR, L lines and W
@@ -32,6 +32,15 @@ export interface GraphTables {
         after?: WalkStopTable;
     };
 }
+/** The GraphPath `graphFromTables` builds of walk `p`, less its steps */
+export declare function tablePath(w: GraphTables['walks'], p: number): Omit<GraphPath, 'nodeIds'> & {
+    start: number;
+};
+/**
+ * Each segment's Graph node id: its name and its one drawn orientation, first
+ * claimed by a link and else by a walk
+ */
+export declare function tableNodeIds({ nodes: n, links: l, walks: w }: GraphTables): string[];
 /**
  * The Graph `convertGFAToGraph` builds from `graphTablesGFA(tables)`, deep
  * equal, built by index: a step costs a few array reads and its visit, where

package/dist/types/index.d.ts

@@ -74,6 +74,10 @@ export { BUBBLE_KIND_COLORS, BUBBLE_KIND_NAMES, bubbleSegmentIds, classifyBubble
 export { bubbleSubgraph } from './bubbles/popBubble.js';
 export type { MinigraphBubble } from './bubbles/bubbleLine.js';
 export { filterSamples, walkRows } from './layout/walkRows.js';
+export { runAt, walkRowRuns, walkRowsOf } from './layout/walkRowRuns.js';
+export type { WalkRowMeta, WalkRowRuns, WalkVisitColumns, } from './layout/walkRowRuns.js';
+export { ribbonJoin, sharedRowOrder, walkRowBlocks, walkRowLinks, } from './layout/walkRowLinks.js';
+export type { WalkRowBlock, WalkRowLink } from './layout/walkRowLinks.js';
 export type { WalkAxis, WalkRow, WalkRows, WalkRun, WalkStop, WalkVisit, } from './layout/walkRows.js';
 export { BAR_PX as WALK_BAR_PX, CALL_TICK as WALK_CALL_TICK, DISAGREES as WALK_DISAGREES, GAP_PX as WALK_GAP_PX, GENE_INK as WALK_GENE_INK, OFF_REFERENCE as WALK_OFF_REFERENCE, ON_REFERENCE as WALK_ON_REFERENCE, OUTSIDE_CUT as WALK_OUTSIDE_CUT, UNBACKED_TICK as WALK_UNBACKED_TICK, alongRow, callTickInk, coalesceRuns, gapStyle, genesOnRow, placeRowGenes, readoutPlacement, rowGeneBoxes, rowPitch, rowSpan, runPaint, unitTicks, walkRowReadout, walkRowsKey, walkRowsKeyTree, walkRowsTree, } from './layout/walkRowDraw.js';
 export type { GeneBox, GeneGaps, KeyEntry, KeySwatch, ReadoutCall, RowGene, RowPitch, WalkRowsFrame, WalkRowsWithCalls, } from './layout/walkRowDraw.js';
@@ -82,7 +86,7 @@ export type { StripFrame, StripMark } from './layout/walkStrip.js';
 export { el, serializeEl } from './el.js';
 export type { El, ElAttrs } from './el.js';
 export { RAMP_GRADIENT_CSS, rampHue, rampHueCss, rampStops, } from './referenceRampCss.js';
-export { walkRowLabels, walkRowsExtent } from './layout/walkRowLayout.js';
+export { walkRowLabels, walkRowLayoutOf, walkRowsExtent, } from './layout/walkRowLayout.js';
 export { ROW_HEIGHT_PX } from './layout/rowSpacing.js';
 export { HALO_FACTOR, LEGEND_INSET_PX, geneCoverageNote, layoutLabels, } from './labelLayout.js';
 export type { LabelLayout, LabelLayoutSource } from './labelLayout.js';

package/dist/types/layout/walkRowLayout.d.ts

@@ -12,3 +12,7 @@ export declare function walkRowLayout(graph: Graph, region?: {
     start: number;
     end: number;
 }): LayoutResult | undefined;
+export declare function walkRowLayoutOf(graph: Graph, walks: WalkRows, region?: {
+    start: number;
+    end: number;
+}): LayoutResult | undefined;

package/dist/types/layout/walkRowLinks.d.ts

@@ -0,0 +1,32 @@
+import type { WalkRow } from './walkRows.js';
+export interface WalkRowLink {
+    row: number;
+    a0: number;
+    a1: number;
+    b0: number;
+    b1: number;
+}
+export interface WalkRowBlock {
+    row: number;
+    start: number;
+    bp: number;
+    block: number;
+}
+export declare function ribbonJoin(rows: WalkRow[]): number;
+/**
+ * The first row, then each row after the one it shares the most sequence
+ * with, so neighbours share as much as they can. A row with no bar is passed
+ * over when comparing.
+ */
+export declare function sharedRowOrder(rows: WalkRow[]): number[];
+/** The ribbons between each two neighbouring rows that both have bars */
+export declare function walkRowLinks(rows: WalkRow[], join?: number): WalkRowLink[];
+/**
+ * Blocks of nodes off the reference's path that two or more rows walk: the
+ * nodes one set of rows walks, joined where a row walks them within `join` bp
+ * of each other. Blocks rank by bp over every visit, so a block has one rank
+ * in every row, set by neither the rows' order nor the build order that
+ * created its nodes. A block under 0.3% of the bp off the path is left out.
+ * Returns each row's stretches of each block.
+ */
+export declare function walkRowBlocks(rows: WalkRow[], join?: number): WalkRowBlock[];