@jbrowse/bandage-core 11.14.0 → 11.16.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/bubbles/bubbleHalos.js +4 -4
- package/dist/bubbles/classifyBubble.js +3 -3
- package/dist/bubbles/superbubbles.js +5 -5
- package/dist/chunks/{chunk-BDS5VZYZ.js → chunk-2BSGQKF3.js} +1 -1
- package/dist/chunks/{chunk-2AVTTUP2.js → chunk-3KGUENAV.js} +1 -1
- package/dist/chunks/{chunk-TEFNVUGD.js → chunk-54CX2MCH.js} +1 -1
- package/dist/chunks/{chunk-OYBYCF2O.js → chunk-5KQRVX4N.js} +1 -1
- package/dist/chunks/{chunk-JUYPCLF4.js → chunk-72JZSR4B.js} +2 -2
- package/dist/chunks/{chunk-S6E3PMH7.js → chunk-7KVA7TFI.js} +1 -1
- package/dist/chunks/{chunk-EIMRD6L7.js → chunk-7UR5EXC2.js} +1 -1
- package/dist/chunks/{chunk-P2GJBFNA.js → chunk-AGUBPT45.js} +1 -1
- package/dist/chunks/{chunk-QL673EK5.js → chunk-BMO5MVPB.js} +1 -1
- package/dist/chunks/{chunk-5SW3PTHO.js → chunk-CF2AXV5I.js} +1 -1
- package/dist/chunks/{chunk-VQ353UDK.js → chunk-EHEIS3TE.js} +1 -1
- package/dist/chunks/{chunk-AURNOR27.js → chunk-ENBFQH7Y.js} +1 -1
- package/dist/chunks/{chunk-XBX3HSC7.js → chunk-F3254CLY.js} +7 -7
- package/dist/chunks/{chunk-DOCI5O5R.js → chunk-G3R7LUOS.js} +2 -2
- package/dist/chunks/{chunk-NWEVR2OQ.js → chunk-HYVIQS4D.js} +1 -1
- package/dist/chunks/{chunk-EOB4Y3EM.js → chunk-JWXSEGEA.js} +1 -1
- package/dist/chunks/{chunk-JUVIPVXX.js → chunk-KMYMAPQ3.js} +12 -8
- package/dist/chunks/{chunk-FXUAVF4A.js → chunk-NIB2A2UZ.js} +1 -1
- package/dist/chunks/{chunk-IZKM4NY7.js → chunk-OKH32P3Z.js} +1 -1
- package/dist/chunks/{chunk-3GORESBG.js → chunk-OMQWCVOJ.js} +2 -0
- package/dist/chunks/{chunk-4JDO7ZLN.js → chunk-QWLCHMNS.js} +1 -1
- package/dist/chunks/{chunk-SZYFZNCO.js → chunk-RATN62M3.js} +1 -1
- package/dist/chunks/{chunk-CLY6DKIU.js → chunk-SR6LCQ5U.js} +34 -12
- package/dist/chunks/{chunk-RT4U3DH3.js → chunk-TICU3HMJ.js} +1 -1
- package/dist/chunks/{chunk-I53QYITQ.js → chunk-TK2ANC2S.js} +1 -1
- package/dist/chunks/{chunk-TQ26XEFL.js → chunk-U6TXPLFJ.js} +2 -2
- package/dist/chunks/{chunk-ZHCQOC67.js → chunk-U7JDTZSK.js} +1 -1
- package/dist/chunks/{chunk-MB4UWYDG.js → chunk-WRSI6VK7.js} +2 -2
- package/dist/chunks/{chunk-7YSIP3O2.js → chunk-WTWO2IPM.js} +1 -1
- package/dist/chunks/{chunk-VNCHWWLG.js → chunk-Y5BPNRFM.js} +1 -1
- package/dist/chunks/{chunk-K4RGSISK.js → chunk-Z5T6EOPF.js} +1 -1
- package/dist/chunks/{chunk-OKPSS5PG.js → chunk-ZB5ADQYK.js} +1 -1
- package/dist/cli/figure.js +22 -22
- package/dist/cli/fold.js +2 -2
- package/dist/deletionEdges.js +3 -1
- package/dist/figure.js +19 -19
- package/dist/figureData.js +16 -16
- package/dist/figureScene.js +11 -11
- package/dist/figureSettings.js +3 -3
- package/dist/graphLabels.js +2 -2
- package/dist/index.js +36 -32
- package/dist/labelLayout.js +6 -6
- package/dist/layout/forceCache.js +3 -3
- package/dist/layout/tubeMapLayout.js +4 -4
- package/dist/layout/walkRowDraw.js +6 -6
- package/dist/layout/walkStrip.js +7 -7
- package/dist/layoutModes.js +5 -5
- package/dist/pathColors.js +3 -3
- package/dist/pipeline.js +2 -2
- package/dist/referenceStrip.js +6 -6
- package/dist/renderer/GeometryBuilder.js +5 -5
- package/dist/tubeMap/axis.js +3 -3
- package/dist/tubeMap/bundle.js +5 -5
- package/dist/tubeMap/coarsen.js +5 -5
- package/dist/tubeMap/deviations.js +6 -6
- package/dist/tubeMap/genes.js +4 -4
- package/dist/tubeMap/nodeColors.js +6 -6
- package/dist/types/deletionEdges.d.ts +1 -0
- package/dist/types/figureData.d.ts +2 -0
- package/dist/types/index.d.ts +2 -2
- package/dist/types/version.d.ts +1 -1
- package/dist/util/SpatialIndex.js +3 -3
- package/dist/util/edgeCurves.js +2 -2
- package/dist/util/hitDetection.js +4 -4
- package/dist/version.js +1 -1
- package/dist/viewport.js +3 -3
- package/dist/walkEncoding.js +6 -6
- package/dist/walkHighlight.js +7 -7
- package/dist/walkKey.js +3 -3
- package/package.json +1 -1
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package/dist/layout/walkStrip.js
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package/dist/layoutModes.js
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} from "../chunks/chunk-TK2ANC2S.js";
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import "../chunks/chunk-ENBFQH7Y.js";
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package/dist/tubeMap/bundle.js
CHANGED
|
@@ -1,19 +1,19 @@
|
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|
import {
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|
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|
bundleRoutes
|
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} from "../chunks/chunk-7KVA7TFI.js";
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package/dist/tubeMap/coarsen.js
CHANGED
|
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|
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|
import {
|
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coarsenTubeMap,
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lastAtMost
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} from "../chunks/chunk-Y5BPNRFM.js";
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import "../chunks/chunk-
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|
import {
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|
lastAtMost
|
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-
} from "../chunks/chunk-
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} from "../chunks/chunk-Y5BPNRFM.js";
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import {
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boxX,
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referenceBoxes
|
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} from "../chunks/chunk-
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import "../chunks/chunk-
|
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|
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} from "../chunks/chunk-TK2ANC2S.js";
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import "../chunks/chunk-
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import "../chunks/chunk-LG2UK4MB.js";
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import "../chunks/chunk-
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import "../chunks/chunk-ENBFQH7Y.js";
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import "../chunks/chunk-HMXCN6PG.js";
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|
import {
|
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|
pathOrigin
|
package/dist/tubeMap/genes.js
CHANGED
|
@@ -3,13 +3,13 @@ import {
|
|
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3
3
|
drawTubeMapGenes,
|
|
4
4
|
tubeMapGeneRows,
|
|
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5
|
tubeMapGenes
|
|
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|
-
} from "../chunks/chunk-
|
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|
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import "../chunks/chunk-
|
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|
-
import "../chunks/chunk-
|
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|
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} from "../chunks/chunk-TICU3HMJ.js";
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|
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import "../chunks/chunk-TK2ANC2S.js";
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|
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import "../chunks/chunk-ENBFQH7Y.js";
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|
import "../chunks/chunk-HMXCN6PG.js";
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import "../chunks/chunk-HNNP5QUN.js";
|
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-
import "../chunks/chunk-
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|
+
import "../chunks/chunk-OMQWCVOJ.js";
|
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|
import "../chunks/chunk-TLWXLNLY.js";
|
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14
|
import "../chunks/chunk-3YBP46PB.js";
|
|
15
15
|
import "../chunks/chunk-JJV2GT2Z.js";
|
|
@@ -1,19 +1,19 @@
|
|
|
1
1
|
import {
|
|
2
2
|
tubeMapNodeColors
|
|
3
|
-
} from "../chunks/chunk-
|
|
4
|
-
import "../chunks/chunk-
|
|
3
|
+
} from "../chunks/chunk-U7JDTZSK.js";
|
|
4
|
+
import "../chunks/chunk-72JZSR4B.js";
|
|
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5
|
import "../chunks/chunk-YUIKEUKY.js";
|
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|
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|
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7
|
import "../chunks/chunk-GQZVR5DW.js";
|
|
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|
-
import "../chunks/chunk-
|
|
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|
-
import "../chunks/chunk-
|
|
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|
+
import "../chunks/chunk-AGUBPT45.js";
|
|
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|
+
import "../chunks/chunk-EHEIS3TE.js";
|
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|
import "../chunks/chunk-ZANALBSX.js";
|
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|
import "../chunks/chunk-L4DBSRA2.js";
|
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|
-
import "../chunks/chunk-
|
|
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|
+
import "../chunks/chunk-ENBFQH7Y.js";
|
|
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|
import "../chunks/chunk-HMXCN6PG.js";
|
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|
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|
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|
import "../chunks/chunk-HNNP5QUN.js";
|
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|
-
import "../chunks/chunk-
|
|
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|
+
import "../chunks/chunk-OMQWCVOJ.js";
|
|
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|
import "../chunks/chunk-TLWXLNLY.js";
|
|
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18
|
import "../chunks/chunk-3YBP46PB.js";
|
|
19
19
|
import "../chunks/chunk-JJV2GT2Z.js";
|
|
@@ -102,6 +102,7 @@ export declare function figureData(graph: Graph, layout: LayoutResult, o?: Figur
|
|
|
102
102
|
end: number;
|
|
103
103
|
} | null;
|
|
104
104
|
deletions: number;
|
|
105
|
+
deletionKey: string | null;
|
|
105
106
|
fadedKey: string | null;
|
|
106
107
|
};
|
|
107
108
|
panels: {
|
|
@@ -162,6 +163,7 @@ export declare function gfaFigureData(text: string, name: string, spec?: GfaFigu
|
|
|
162
163
|
end: number;
|
|
163
164
|
} | null;
|
|
164
165
|
deletions: number;
|
|
166
|
+
deletionKey: string | null;
|
|
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167
|
fadedKey: string | null;
|
|
166
168
|
};
|
|
167
169
|
panels: {
|
package/dist/types/index.d.ts
CHANGED
|
@@ -47,9 +47,9 @@ export { connectorAt, drawLitConnector, drawTubeMapConnectors, tubeMapConnectors
|
|
|
47
47
|
export type { Connector } from './tubeMap/connectors.js';
|
|
48
48
|
export { bundleRoutes } from './tubeMap/bundle.js';
|
|
49
49
|
export type { TubeMapColumn, TubeMapDrawing } from './layout/tubeMapLayout.js';
|
|
50
|
-
export { deletionDrawing, deletionEdges } from './deletionEdges.js';
|
|
50
|
+
export { deletionDrawing, deletionEdges, deletionKey } from './deletionEdges.js';
|
|
51
51
|
export type { DeletionDrawing, DeletionEdge } from './deletionEdges.js';
|
|
52
|
-
export { facetLifts, walkHighlight, walkLift } from './walkHighlight.js';
|
|
52
|
+
export { facetLifts, fadedKey, walkHighlight, walkLift } from './walkHighlight.js';
|
|
53
53
|
export { rangeText, walkKey, walkPosition } from './walkKey.js';
|
|
54
54
|
export { figureSvg } from './figure.js';
|
|
55
55
|
export { figureData, gfaFigureData } from './figureData.js';
|
package/dist/types/version.d.ts
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
export declare const version = "11.
|
|
1
|
+
export declare const version = "11.16.0";
|
|
@@ -1,10 +1,10 @@
|
|
|
1
1
|
import {
|
|
2
2
|
EdgeSpatialIndex,
|
|
3
3
|
SpatialIndex
|
|
4
|
-
} from "../chunks/chunk-
|
|
5
|
-
import "../chunks/chunk-
|
|
4
|
+
} from "../chunks/chunk-WTWO2IPM.js";
|
|
5
|
+
import "../chunks/chunk-AGUBPT45.js";
|
|
6
6
|
import "../chunks/chunk-HMXCN6PG.js";
|
|
7
|
-
import "../chunks/chunk-
|
|
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|
+
import "../chunks/chunk-OMQWCVOJ.js";
|
|
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8
|
import "../chunks/chunk-TLWXLNLY.js";
|
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|
import "../chunks/chunk-3YBP46PB.js";
|
|
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10
|
import "../chunks/chunk-JJV2GT2Z.js";
|
package/dist/util/edgeCurves.js
CHANGED
|
@@ -1,8 +1,8 @@
|
|
|
1
1
|
import {
|
|
2
2
|
baseEdgeCurves
|
|
3
|
-
} from "../chunks/chunk-
|
|
3
|
+
} from "../chunks/chunk-AGUBPT45.js";
|
|
4
4
|
import "../chunks/chunk-HMXCN6PG.js";
|
|
5
|
-
import "../chunks/chunk-
|
|
5
|
+
import "../chunks/chunk-OMQWCVOJ.js";
|
|
6
6
|
import "../chunks/chunk-TLWXLNLY.js";
|
|
7
7
|
import "../chunks/chunk-3YBP46PB.js";
|
|
8
8
|
import "../chunks/chunk-JJV2GT2Z.js";
|
|
@@ -4,11 +4,11 @@ import {
|
|
|
4
4
|
findHoveredEdge,
|
|
5
5
|
findHoveredNode,
|
|
6
6
|
nodesUnderBox
|
|
7
|
-
} from "../chunks/chunk-
|
|
8
|
-
import "../chunks/chunk-
|
|
9
|
-
import "../chunks/chunk-
|
|
7
|
+
} from "../chunks/chunk-QWLCHMNS.js";
|
|
8
|
+
import "../chunks/chunk-WTWO2IPM.js";
|
|
9
|
+
import "../chunks/chunk-AGUBPT45.js";
|
|
10
10
|
import "../chunks/chunk-HMXCN6PG.js";
|
|
11
|
-
import "../chunks/chunk-
|
|
11
|
+
import "../chunks/chunk-OMQWCVOJ.js";
|
|
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12
|
import "../chunks/chunk-TLWXLNLY.js";
|
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|
import "../chunks/chunk-3YBP46PB.js";
|
|
14
14
|
import "../chunks/chunk-JJV2GT2Z.js";
|
package/dist/version.js
CHANGED
package/dist/viewport.js
CHANGED
|
@@ -5,8 +5,8 @@ import {
|
|
|
5
5
|
screenToLayout,
|
|
6
6
|
viewportOf,
|
|
7
7
|
zoomAbout
|
|
8
|
-
} from "./chunks/chunk-
|
|
9
|
-
import "./chunks/chunk-
|
|
8
|
+
} from "./chunks/chunk-ZB5ADQYK.js";
|
|
9
|
+
import "./chunks/chunk-3KGUENAV.js";
|
|
10
10
|
import "./chunks/chunk-OPPVSPEF.js";
|
|
11
11
|
import "./chunks/chunk-NAYS472K.js";
|
|
12
12
|
import "./chunks/chunk-4FRX2SPT.js";
|
|
@@ -21,7 +21,7 @@ import "./chunks/chunk-LG2UK4MB.js";
|
|
|
21
21
|
import "./chunks/chunk-HNNP5QUN.js";
|
|
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22
|
import "./chunks/chunk-HKYXWZQS.js";
|
|
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23
|
import "./chunks/chunk-34BOZKIE.js";
|
|
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|
-
import "./chunks/chunk-
|
|
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|
+
import "./chunks/chunk-OMQWCVOJ.js";
|
|
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25
|
import "./chunks/chunk-TLWXLNLY.js";
|
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|
import "./chunks/chunk-3YBP46PB.js";
|
|
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27
|
import "./chunks/chunk-JJV2GT2Z.js";
|
package/dist/walkEncoding.js
CHANGED
|
@@ -10,20 +10,20 @@ import {
|
|
|
10
10
|
schemeCss,
|
|
11
11
|
schemeRgb,
|
|
12
12
|
splitFamilies
|
|
13
|
-
} from "./chunks/chunk-
|
|
14
|
-
import "./chunks/chunk-
|
|
13
|
+
} from "./chunks/chunk-JWXSEGEA.js";
|
|
14
|
+
import "./chunks/chunk-72JZSR4B.js";
|
|
15
15
|
import "./chunks/chunk-YUIKEUKY.js";
|
|
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|
import "./chunks/chunk-G2FD7S3C.js";
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|
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17
|
import "./chunks/chunk-GQZVR5DW.js";
|
|
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|
-
import "./chunks/chunk-
|
|
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|
-
import "./chunks/chunk-
|
|
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|
+
import "./chunks/chunk-AGUBPT45.js";
|
|
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|
+
import "./chunks/chunk-EHEIS3TE.js";
|
|
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20
|
import "./chunks/chunk-ZANALBSX.js";
|
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21
|
import "./chunks/chunk-L4DBSRA2.js";
|
|
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|
-
import "./chunks/chunk-
|
|
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|
+
import "./chunks/chunk-ENBFQH7Y.js";
|
|
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23
|
import "./chunks/chunk-HMXCN6PG.js";
|
|
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24
|
import "./chunks/chunk-AB35TJST.js";
|
|
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25
|
import "./chunks/chunk-HNNP5QUN.js";
|
|
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|
-
import "./chunks/chunk-
|
|
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|
+
import "./chunks/chunk-OMQWCVOJ.js";
|
|
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27
|
import "./chunks/chunk-TLWXLNLY.js";
|
|
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|
import "./chunks/chunk-3YBP46PB.js";
|
|
29
29
|
import "./chunks/chunk-JJV2GT2Z.js";
|
package/dist/walkHighlight.js
CHANGED
|
@@ -3,22 +3,22 @@ import {
|
|
|
3
3
|
fadedKey,
|
|
4
4
|
walkHighlight,
|
|
5
5
|
walkLift
|
|
6
|
-
} from "./chunks/chunk-
|
|
7
|
-
import "./chunks/chunk-
|
|
8
|
-
import "./chunks/chunk-
|
|
6
|
+
} from "./chunks/chunk-WRSI6VK7.js";
|
|
7
|
+
import "./chunks/chunk-JWXSEGEA.js";
|
|
8
|
+
import "./chunks/chunk-72JZSR4B.js";
|
|
9
9
|
import "./chunks/chunk-YUIKEUKY.js";
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|
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|
import "./chunks/chunk-G2FD7S3C.js";
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|
import "./chunks/chunk-GQZVR5DW.js";
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|
-
import "./chunks/chunk-
|
|
13
|
-
import "./chunks/chunk-
|
|
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|
+
import "./chunks/chunk-AGUBPT45.js";
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13
|
+
import "./chunks/chunk-EHEIS3TE.js";
|
|
14
14
|
import "./chunks/chunk-ZANALBSX.js";
|
|
15
15
|
import "./chunks/chunk-L4DBSRA2.js";
|
|
16
16
|
import "./chunks/chunk-LG2UK4MB.js";
|
|
17
|
-
import "./chunks/chunk-
|
|
17
|
+
import "./chunks/chunk-ENBFQH7Y.js";
|
|
18
18
|
import "./chunks/chunk-HMXCN6PG.js";
|
|
19
19
|
import "./chunks/chunk-AB35TJST.js";
|
|
20
20
|
import "./chunks/chunk-HNNP5QUN.js";
|
|
21
|
-
import "./chunks/chunk-
|
|
21
|
+
import "./chunks/chunk-OMQWCVOJ.js";
|
|
22
22
|
import "./chunks/chunk-TLWXLNLY.js";
|
|
23
23
|
import "./chunks/chunk-3YBP46PB.js";
|
|
24
24
|
import "./chunks/chunk-JJV2GT2Z.js";
|
package/dist/walkKey.js
CHANGED
|
@@ -2,13 +2,13 @@ import {
|
|
|
2
2
|
rangeText,
|
|
3
3
|
walkKey,
|
|
4
4
|
walkPosition
|
|
5
|
-
} from "./chunks/chunk-
|
|
5
|
+
} from "./chunks/chunk-OKH32P3Z.js";
|
|
6
6
|
import "./chunks/chunk-LG2UK4MB.js";
|
|
7
|
-
import "./chunks/chunk-
|
|
7
|
+
import "./chunks/chunk-ENBFQH7Y.js";
|
|
8
8
|
import "./chunks/chunk-HMXCN6PG.js";
|
|
9
9
|
import "./chunks/chunk-AB35TJST.js";
|
|
10
10
|
import "./chunks/chunk-HNNP5QUN.js";
|
|
11
|
-
import "./chunks/chunk-
|
|
11
|
+
import "./chunks/chunk-OMQWCVOJ.js";
|
|
12
12
|
import "./chunks/chunk-TLWXLNLY.js";
|
|
13
13
|
import "./chunks/chunk-3YBP46PB.js";
|
|
14
14
|
import "./chunks/chunk-JJV2GT2Z.js";
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/bandage-core",
|
|
3
|
-
"version": "11.
|
|
3
|
+
"version": "11.16.0",
|
|
4
4
|
"description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
|
|
5
5
|
"license": "GPL-3.0-or-later",
|
|
6
6
|
"repository": {
|