@jbrowse/bandage-core 11.13.0 → 11.14.0

package/dist/chunks/{chunk-C5FEIJFK.js → chunk-CLY6DKIU.js}

@@ -30,13 +30,16 @@ import {
 } from "./chunk-HEYIAMTC.js";
 import {
   version
-} from "./chunk-OCYQIHFA.js";
+} from "./chunk-FXUAVF4A.js";
 import {
   axisScaleOf
 } from "./chunk-OKPSS5PG.js";
 import {
   figureScene
-} from "./chunk-HL4U73TC.js";
+} from "./chunk-XBX3HSC7.js";
+import {
+  fadedKey
+} from "./chunk-MB4UWYDG.js";
 import {
   encodingStops
 } from "./chunk-EOB4Y3EM.js";
@@ -315,7 +318,11 @@ function figureSvg(graph, layout, o = {}) {
           y,
           [{ offset: 0, color: FADED }],
           "",
-          `not on ${lift.walks.length === 1 ? labelOf(lift.walks[0].name) : "these walks"}`,
+          fadedKey(
+            graph,
+            lift,
+            lift.walks.length === 1 ? labelOf(lift.walks[0].name) : "these walks"
+          ),
           void 0,
           0.3
         )

package/dist/chunks/{chunk-OCYQIHFA.js → chunk-FXUAVF4A.js}

@@ -1,5 +1,5 @@
 // src/version.ts
-var version = "11.13.0";
+var version = "11.14.0";
 
 export {
   version

package/dist/chunks/{chunk-7AZ57C5C.js → chunk-JUVIPVXX.js}

@@ -12,13 +12,16 @@ import {
 } from "./chunk-HEYIAMTC.js";
 import {
   version
-} from "./chunk-OCYQIHFA.js";
+} from "./chunk-FXUAVF4A.js";
 import {
   axisScaleOf
 } from "./chunk-OKPSS5PG.js";
 import {
   figureScene
-} from "./chunk-HL4U73TC.js";
+} from "./chunk-XBX3HSC7.js";
+import {
+  fadedKey
+} from "./chunk-MB4UWYDG.js";
 import {
   encodingStops
 } from "./chunk-EOB4Y3EM.js";
@@ -317,7 +320,13 @@ function figureData(graph, layout, o = {}) {
         start: referenceRamp.start,
         end: referenceRamp.start + referenceRamp.span
       } : null,
-      deletions: drawnDeletions.shown.length
+      deletions: drawnDeletions.shown.length,
+      // what the key for the drawing a lift fades says
+      fadedKey: lift ? fadedKey(
+        graph,
+        lift,
+        lift.walks.length === 1 ? labelOf(lift.walks[0].name) : "these walks"
+      ) : null
     },
     panels: {
       panel: panels.map((p) => p.name),

package/dist/chunks/{chunk-ANWUCJZB.js → chunk-MB4UWYDG.js}

@@ -21,6 +21,15 @@ import {
 } from "./chunk-2JL2JVZ2.js";
 
 // src/walkHighlight.ts
+function fadedKey(graph, lift, walks) {
+  const onPaths = /* @__PURE__ */ new Set();
+  for (const path of graph.paths ?? []) {
+    for (const id of path.nodeIds) {
+      onPaths.add(id);
+    }
+  }
+  return graph.nodes.every((n) => lift.nodeIds.has(n.id) || onPaths.has(n.id)) ? "only in other haplotypes" : `nodes and links not on ${walks}`;
+}
 var isReference = (graph, name) => !!graph.referencePath && pathOrigin(name).name === graph.referencePath;
 function piecesOf(graph, name) {
   const origin = pathOrigin(name).name;
@@ -282,6 +291,7 @@ function liftOf(walks, ramp) {
 }
 
 export {
+  fadedKey,
   walkHighlight,
   walkLift,
   facetLifts

package/dist/chunks/{chunk-HL4U73TC.js → chunk-XBX3HSC7.js}

@@ -4,7 +4,7 @@ import {
 import {
   facetLifts,
   walkLift
-} from "./chunk-ANWUCJZB.js";
+} from "./chunk-MB4UWYDG.js";
 import {
   buildGeometry,
   computeReferenceRamp

package/dist/cli/figure.js

@@ -9,7 +9,7 @@ import "../chunks/chunk-EQDQ7P4Y.js";
 import {
   laidOutGraph,
   walkLayers
-} from "../chunks/chunk-7AZ57C5C.js";
+} from "../chunks/chunk-JUVIPVXX.js";
 import {
   LAYOUT_ENGINE_VALUES,
   isLayoutEngineKind
@@ -36,7 +36,7 @@ import "../chunks/chunk-ZKSC7QVE.js";
 import "../chunks/chunk-HNWJ4B7S.js";
 import {
   figureSvg
-} from "../chunks/chunk-C5FEIJFK.js";
+} from "../chunks/chunk-CLY6DKIU.js";
 import "../chunks/chunk-V4YML3GR.js";
 import "../chunks/chunk-QL673EK5.js";
 import "../chunks/chunk-4DMSPNYV.js";
@@ -50,11 +50,11 @@ import "../chunks/chunk-TQ26XEFL.js";
 import "../chunks/chunk-4JDO7ZLN.js";
 import "../chunks/chunk-7YSIP3O2.js";
 import "../chunks/chunk-HEYIAMTC.js";
-import "../chunks/chunk-OCYQIHFA.js";
+import "../chunks/chunk-FXUAVF4A.js";
 import "../chunks/chunk-OKPSS5PG.js";
-import "../chunks/chunk-HL4U73TC.js";
+import "../chunks/chunk-XBX3HSC7.js";
 import "../chunks/chunk-LOCJN3BZ.js";
-import "../chunks/chunk-ANWUCJZB.js";
+import "../chunks/chunk-MB4UWYDG.js";
 import "../chunks/chunk-EOB4Y3EM.js";
 import "../chunks/chunk-JUYPCLF4.js";
 import "../chunks/chunk-YUIKEUKY.js";

package/dist/figure.js

@@ -1,6 +1,6 @@
 import {
   figureSvg
-} from "./chunks/chunk-C5FEIJFK.js";
+} from "./chunks/chunk-CLY6DKIU.js";
 import "./chunks/chunk-V4YML3GR.js";
 import "./chunks/chunk-QL673EK5.js";
 import "./chunks/chunk-4DMSPNYV.js";
@@ -11,11 +11,11 @@ import "./chunks/chunk-TQ26XEFL.js";
 import "./chunks/chunk-4JDO7ZLN.js";
 import "./chunks/chunk-7YSIP3O2.js";
 import "./chunks/chunk-HEYIAMTC.js";
-import "./chunks/chunk-OCYQIHFA.js";
+import "./chunks/chunk-FXUAVF4A.js";
 import "./chunks/chunk-OKPSS5PG.js";
-import "./chunks/chunk-HL4U73TC.js";
+import "./chunks/chunk-XBX3HSC7.js";
 import "./chunks/chunk-LOCJN3BZ.js";
-import "./chunks/chunk-ANWUCJZB.js";
+import "./chunks/chunk-MB4UWYDG.js";
 import "./chunks/chunk-EOB4Y3EM.js";
 import "./chunks/chunk-JUYPCLF4.js";
 import "./chunks/chunk-YUIKEUKY.js";

package/dist/figureData.js

@@ -3,7 +3,7 @@ import {
   gfaFigureData,
   laidOutGraph,
   walkLayers
-} from "./chunks/chunk-7AZ57C5C.js";
+} from "./chunks/chunk-JUVIPVXX.js";
 import "./chunks/chunk-CO6RGQAD.js";
 import "./chunks/chunk-TEFNVUGD.js";
 import "./chunks/chunk-3JDGPLCL.js";
@@ -18,11 +18,11 @@ import "./chunks/chunk-FNDNSDKW.js";
 import "./chunks/chunk-ZKSC7QVE.js";
 import "./chunks/chunk-HNWJ4B7S.js";
 import "./chunks/chunk-HEYIAMTC.js";
-import "./chunks/chunk-OCYQIHFA.js";
+import "./chunks/chunk-FXUAVF4A.js";
 import "./chunks/chunk-OKPSS5PG.js";
-import "./chunks/chunk-HL4U73TC.js";
+import "./chunks/chunk-XBX3HSC7.js";
 import "./chunks/chunk-LOCJN3BZ.js";
-import "./chunks/chunk-ANWUCJZB.js";
+import "./chunks/chunk-MB4UWYDG.js";
 import "./chunks/chunk-EOB4Y3EM.js";
 import "./chunks/chunk-JUYPCLF4.js";
 import "./chunks/chunk-YUIKEUKY.js";

package/dist/figureScene.js

@@ -1,8 +1,8 @@
 import {
   figureScene
-} from "./chunks/chunk-HL4U73TC.js";
+} from "./chunks/chunk-XBX3HSC7.js";
 import "./chunks/chunk-LOCJN3BZ.js";
-import "./chunks/chunk-ANWUCJZB.js";
+import "./chunks/chunk-MB4UWYDG.js";
 import "./chunks/chunk-EOB4Y3EM.js";
 import "./chunks/chunk-JUYPCLF4.js";
 import "./chunks/chunk-YUIKEUKY.js";

package/dist/index.js

@@ -97,7 +97,7 @@ import {
 import {
   figureData,
   gfaFigureData
-} from "./chunks/chunk-7AZ57C5C.js";
+} from "./chunks/chunk-JUVIPVXX.js";
 import {
   LAYOUT_ENGINES,
   layoutEngine
@@ -134,7 +134,7 @@ import {
 import "./chunks/chunk-HNWJ4B7S.js";
 import {
   figureSvg
-} from "./chunks/chunk-C5FEIJFK.js";
+} from "./chunks/chunk-CLY6DKIU.js";
 import {
   svgCanvas
 } from "./chunks/chunk-V4YML3GR.js";
@@ -205,7 +205,7 @@ import {
 } from "./chunks/chunk-HEYIAMTC.js";
 import {
   version
-} from "./chunks/chunk-OCYQIHFA.js";
+} from "./chunks/chunk-FXUAVF4A.js";
 import {
   axisScaleOf,
   contains,
@@ -214,7 +214,7 @@ import {
   viewportOf,
   zoomAbout
 } from "./chunks/chunk-OKPSS5PG.js";
-import "./chunks/chunk-HL4U73TC.js";
+import "./chunks/chunk-XBX3HSC7.js";
 import {
   layoutGeometryInputs
 } from "./chunks/chunk-LOCJN3BZ.js";
@@ -222,7 +222,7 @@ import {
   facetLifts,
   walkHighlight,
   walkLift
-} from "./chunks/chunk-ANWUCJZB.js";
+} from "./chunks/chunk-MB4UWYDG.js";
 import {
   WALK_FIELDS,
   WALK_SCHEMES,

package/dist/types/figureData.d.ts

@@ -102,6 +102,7 @@ export declare function figureData(graph: Graph, layout: LayoutResult, o?: Figur
             end: number;
         } | null;
         deletions: number;
+        fadedKey: string | null;
     };
     panels: {
         panel: string[];
@@ -161,6 +162,7 @@ export declare function gfaFigureData(text: string, name: string, spec?: GfaFigu
             end: number;
         } | null;
         deletions: number;
+        fadedKey: string | null;
     };
     panels: {
         panel: string[];

package/dist/types/version.d.ts

@@ -1 +1 @@
-export declare const version = "11.13.0";
+export declare const version = "11.14.0";

package/dist/types/walkHighlight.d.ts

@@ -39,6 +39,7 @@ export interface WalkLift {
     edgeIndexes: Set<number>;
     names: Set<string>;
 }
+export declare function fadedKey(graph: Graph, lift: WalkLift, walks: string): string;
 export declare function walkHighlight(graph: Graph, name: string): WalkHighlight | undefined;
 export declare function walkLift(graph: Graph, layers: readonly WalkLayer[], ramp?: ReferenceRamp): WalkLift | undefined;
 export declare function facetLifts(graph: Graph, lift: WalkLift, layers: readonly WalkLayer[], ramp?: ReferenceRamp): WalkLift[];

package/dist/version.js

@@ -1,6 +1,6 @@
 import {
   version
-} from "./chunks/chunk-OCYQIHFA.js";
+} from "./chunks/chunk-FXUAVF4A.js";
 export {
   version
 };

package/dist/walkHighlight.js

@@ -1,8 +1,9 @@
 import {
   facetLifts,
+  fadedKey,
   walkHighlight,
   walkLift
-} from "./chunks/chunk-ANWUCJZB.js";
+} from "./chunks/chunk-MB4UWYDG.js";
 import "./chunks/chunk-EOB4Y3EM.js";
 import "./chunks/chunk-JUYPCLF4.js";
 import "./chunks/chunk-YUIKEUKY.js";
@@ -30,6 +31,7 @@ import "./chunks/chunk-DAEEMZ74.js";
 import "./chunks/chunk-2JL2JVZ2.js";
 export {
   facetLifts,
+  fadedKey,
   walkHighlight,
   walkLift
 };

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/bandage-core",
-  "version": "11.13.0",
+  "version": "11.14.0",
   "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
   "license": "GPL-3.0-or-later",
   "repository": {