@jbrowse/bandage-core 11.1.0 → 11.2.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/chunks/{chunk-DEDD7TFJ.js → chunk-5DHOFF4C.js} +3 -3
- package/dist/chunks/{chunk-ZUL52ZX2.js → chunk-5GRF7PJX.js} +1 -1
- package/dist/chunks/{chunk-LMH5KVJZ.js → chunk-A7VSP7MQ.js} +1 -1
- package/dist/chunks/{chunk-RETNT73O.js → chunk-C2TAJTUO.js} +1 -1
- package/dist/chunks/{chunk-YHJ5JLBI.js → chunk-QR5XR5XL.js} +1 -1
- package/dist/chunks/{chunk-V5MAL7LU.js → chunk-QTDBOJJO.js} +1 -1
- package/dist/chunks/{chunk-IVOK5V3H.js → chunk-S2PUF4SX.js} +1 -1
- package/dist/chunks/{chunk-OI4YVAMM.js → chunk-TREAOGDV.js} +3 -3
- package/dist/chunks/{chunk-NGUM77EP.js → chunk-VQT3A57T.js} +2 -2
- package/dist/chunks/{chunk-JFHYG25O.js → chunk-VWT3WZRQ.js} +4 -4
- package/dist/chunks/{chunk-Y3FDMDNT.js → chunk-WAST7UVB.js} +1 -1
- package/dist/chunks/{chunk-IZ6Y5D23.js → chunk-ZU54STUX.js} +1 -1
- package/dist/cli/figure.js +9 -9
- package/dist/figure.js +6 -6
- package/dist/figureData.js +7 -7
- package/dist/figureScene.js +3 -3
- package/dist/index.js +11 -11
- package/dist/layout/tubeMapLayout.js +2 -2
- package/dist/layout/walkRowLayout.js +2 -2
- package/dist/layout/walkRows.js +1 -1
- package/dist/layout/walkStrip.js +3 -3
- package/dist/layoutModes.js +4 -4
- package/dist/tubeMap/bundle.js +3 -3
- package/dist/tubeMap/coarsen.js +3 -3
- package/dist/tubeMap/deviations.js +3 -3
- package/dist/tubeMap/draw.js +2 -2
- package/dist/types/layout/walkRows.d.ts +4 -2
- package/dist/types/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/package.json +1 -1
|
@@ -172,7 +172,7 @@ function referenceWalkName(graph) {
|
|
|
172
172
|
);
|
|
173
173
|
return names.find((n) => rankZero.has(n)) ?? names[0];
|
|
174
174
|
}
|
|
175
|
-
function walkRows(graph, region, unit) {
|
|
175
|
+
function walkRows(graph, region, unit, o = {}) {
|
|
176
176
|
const paths = graph.paths ?? [];
|
|
177
177
|
const nameOf = (p) => pathOrigin(p.name).name;
|
|
178
178
|
const referenceName = referenceWalkName(graph);
|
|
@@ -234,7 +234,7 @@ function walkRows(graph, region, unit) {
|
|
|
234
234
|
referenceEnd
|
|
235
235
|
} = table;
|
|
236
236
|
const runs = [];
|
|
237
|
-
const visits = [];
|
|
237
|
+
const visits = o.visits ? [] : void 0;
|
|
238
238
|
let last;
|
|
239
239
|
let bp = 0;
|
|
240
240
|
let offReferenceBp = 0;
|
|
@@ -261,7 +261,7 @@ function walkRows(graph, region, unit) {
|
|
|
261
261
|
}
|
|
262
262
|
const len = lengths[node];
|
|
263
263
|
const on = onReference[node] === 1;
|
|
264
|
-
visits
|
|
264
|
+
visits?.push({ node: nodeIds[node], start: bp, onReference: on });
|
|
265
265
|
const at = last?.referenceStart;
|
|
266
266
|
const forward = on && at !== void 0 && step >= 0 && at + last.bp === referenceStart2[node];
|
|
267
267
|
const backward = on && at !== void 0 && step <= 0 && referenceEnd[node] === at;
|
|
@@ -3,7 +3,7 @@ import {
|
|
|
3
3
|
} from "./chunk-JMABOQWL.js";
|
|
4
4
|
import {
|
|
5
5
|
layoutModeByValue
|
|
6
|
-
} from "./chunk-
|
|
6
|
+
} from "./chunk-VQT3A57T.js";
|
|
7
7
|
import {
|
|
8
8
|
parseRegion
|
|
9
9
|
} from "./chunk-TUQKGAK3.js";
|
|
@@ -12,13 +12,13 @@ import {
|
|
|
12
12
|
} from "./chunk-77EGQQJU.js";
|
|
13
13
|
import {
|
|
14
14
|
version
|
|
15
|
-
} from "./chunk-
|
|
15
|
+
} from "./chunk-WAST7UVB.js";
|
|
16
16
|
import {
|
|
17
17
|
axisScaleOf
|
|
18
18
|
} from "./chunk-AI5PTOSV.js";
|
|
19
19
|
import {
|
|
20
20
|
figureScene
|
|
21
|
-
} from "./chunk-
|
|
21
|
+
} from "./chunk-S2PUF4SX.js";
|
|
22
22
|
import {
|
|
23
23
|
encodingStops
|
|
24
24
|
} from "./chunk-TABI4JEU.js";
|
|
@@ -3,7 +3,7 @@ import {
|
|
|
3
3
|
hasTubeMapPaths,
|
|
4
4
|
tubeMapLayout,
|
|
5
5
|
tubeMapReferenceLayout
|
|
6
|
-
} from "./chunk-
|
|
6
|
+
} from "./chunk-A7VSP7MQ.js";
|
|
7
7
|
import {
|
|
8
8
|
sampleRowLayout
|
|
9
9
|
} from "./chunk-GJU6BJJA.js";
|
|
@@ -15,7 +15,7 @@ import {
|
|
|
15
15
|
} from "./chunk-UAFATXYA.js";
|
|
16
16
|
import {
|
|
17
17
|
walkRowLayout
|
|
18
|
-
} from "./chunk-
|
|
18
|
+
} from "./chunk-QR5XR5XL.js";
|
|
19
19
|
import {
|
|
20
20
|
isBackbone,
|
|
21
21
|
isOffReference
|
|
@@ -5,7 +5,7 @@ import {
|
|
|
5
5
|
stripGeneGaps,
|
|
6
6
|
walkStripFrame,
|
|
7
7
|
walkStripLabelsTree
|
|
8
|
-
} from "./chunk-
|
|
8
|
+
} from "./chunk-ZU54STUX.js";
|
|
9
9
|
import {
|
|
10
10
|
walkRowsKey,
|
|
11
11
|
walkRowsKeyTree,
|
|
@@ -34,13 +34,13 @@ import {
|
|
|
34
34
|
} from "./chunk-77EGQQJU.js";
|
|
35
35
|
import {
|
|
36
36
|
version
|
|
37
|
-
} from "./chunk-
|
|
37
|
+
} from "./chunk-WAST7UVB.js";
|
|
38
38
|
import {
|
|
39
39
|
axisScaleOf
|
|
40
40
|
} from "./chunk-AI5PTOSV.js";
|
|
41
41
|
import {
|
|
42
42
|
figureScene
|
|
43
|
-
} from "./chunk-
|
|
43
|
+
} from "./chunk-S2PUF4SX.js";
|
|
44
44
|
import {
|
|
45
45
|
encodingStops
|
|
46
46
|
} from "./chunk-TABI4JEU.js";
|
|
@@ -49,7 +49,7 @@ import {
|
|
|
49
49
|
} from "./chunk-D4ZFRBB4.js";
|
|
50
50
|
import {
|
|
51
51
|
walkRowLabels
|
|
52
|
-
} from "./chunk-
|
|
52
|
+
} from "./chunk-QR5XR5XL.js";
|
|
53
53
|
import {
|
|
54
54
|
nodeInk
|
|
55
55
|
} from "./chunk-CRCD3ODN.js";
|
package/dist/cli/figure.js
CHANGED
|
@@ -8,9 +8,9 @@ import {
|
|
|
8
8
|
import "../chunks/chunk-G6UIYQZR.js";
|
|
9
9
|
import {
|
|
10
10
|
figureSvg
|
|
11
|
-
} from "../chunks/chunk-
|
|
11
|
+
} from "../chunks/chunk-VWT3WZRQ.js";
|
|
12
12
|
import "../chunks/chunk-V4YML3GR.js";
|
|
13
|
-
import "../chunks/chunk-
|
|
13
|
+
import "../chunks/chunk-ZU54STUX.js";
|
|
14
14
|
import {
|
|
15
15
|
genesOnRow,
|
|
16
16
|
placeRowGenes
|
|
@@ -25,15 +25,15 @@ import "../chunks/chunk-H2H4Y3TV.js";
|
|
|
25
25
|
import {
|
|
26
26
|
laidOutGraph,
|
|
27
27
|
walkLayers
|
|
28
|
-
} from "../chunks/chunk-
|
|
28
|
+
} from "../chunks/chunk-TREAOGDV.js";
|
|
29
29
|
import {
|
|
30
30
|
LAYOUT_ENGINE_VALUES,
|
|
31
31
|
isLayoutEngineKind
|
|
32
32
|
} from "../chunks/chunk-JMABOQWL.js";
|
|
33
33
|
import {
|
|
34
34
|
LAYOUT_MODES
|
|
35
|
-
} from "../chunks/chunk-
|
|
36
|
-
import "../chunks/chunk-
|
|
35
|
+
} from "../chunks/chunk-VQT3A57T.js";
|
|
36
|
+
import "../chunks/chunk-A7VSP7MQ.js";
|
|
37
37
|
import "../chunks/chunk-A7H753BA.js";
|
|
38
38
|
import "../chunks/chunk-GJU6BJJA.js";
|
|
39
39
|
import "../chunks/chunk-GJLZ2MKE.js";
|
|
@@ -51,9 +51,9 @@ import {
|
|
|
51
51
|
import "../chunks/chunk-NMWQUFPF.js";
|
|
52
52
|
import "../chunks/chunk-HNWJ4B7S.js";
|
|
53
53
|
import "../chunks/chunk-77EGQQJU.js";
|
|
54
|
-
import "../chunks/chunk-
|
|
54
|
+
import "../chunks/chunk-WAST7UVB.js";
|
|
55
55
|
import "../chunks/chunk-AI5PTOSV.js";
|
|
56
|
-
import "../chunks/chunk-
|
|
56
|
+
import "../chunks/chunk-S2PUF4SX.js";
|
|
57
57
|
import "../chunks/chunk-LOCJN3BZ.js";
|
|
58
58
|
import "../chunks/chunk-DR24UTRS.js";
|
|
59
59
|
import "../chunks/chunk-TABI4JEU.js";
|
|
@@ -62,11 +62,11 @@ import "../chunks/chunk-SWCULW6S.js";
|
|
|
62
62
|
import "../chunks/chunk-G2FD7S3C.js";
|
|
63
63
|
import "../chunks/chunk-GQZVR5DW.js";
|
|
64
64
|
import "../chunks/chunk-WA5WNP6V.js";
|
|
65
|
-
import "../chunks/chunk-
|
|
65
|
+
import "../chunks/chunk-QR5XR5XL.js";
|
|
66
66
|
import {
|
|
67
67
|
filterSamples,
|
|
68
68
|
walkRows
|
|
69
|
-
} from "../chunks/chunk-
|
|
69
|
+
} from "../chunks/chunk-5DHOFF4C.js";
|
|
70
70
|
import "../chunks/chunk-3GP3KT5L.js";
|
|
71
71
|
import "../chunks/chunk-CRCD3ODN.js";
|
|
72
72
|
import "../chunks/chunk-W6EXQDV5.js";
|
package/dist/figure.js
CHANGED
|
@@ -1,8 +1,8 @@
|
|
|
1
1
|
import {
|
|
2
2
|
figureSvg
|
|
3
|
-
} from "./chunks/chunk-
|
|
3
|
+
} from "./chunks/chunk-VWT3WZRQ.js";
|
|
4
4
|
import "./chunks/chunk-V4YML3GR.js";
|
|
5
|
-
import "./chunks/chunk-
|
|
5
|
+
import "./chunks/chunk-ZU54STUX.js";
|
|
6
6
|
import "./chunks/chunk-XZ6PQBU6.js";
|
|
7
7
|
import "./chunks/chunk-EJRJAAN7.js";
|
|
8
8
|
import "./chunks/chunk-RBCE2OQH.js";
|
|
@@ -12,9 +12,9 @@ import "./chunks/chunk-OMUPUB4J.js";
|
|
|
12
12
|
import "./chunks/chunk-3VCKBSML.js";
|
|
13
13
|
import "./chunks/chunk-H2H4Y3TV.js";
|
|
14
14
|
import "./chunks/chunk-77EGQQJU.js";
|
|
15
|
-
import "./chunks/chunk-
|
|
15
|
+
import "./chunks/chunk-WAST7UVB.js";
|
|
16
16
|
import "./chunks/chunk-AI5PTOSV.js";
|
|
17
|
-
import "./chunks/chunk-
|
|
17
|
+
import "./chunks/chunk-S2PUF4SX.js";
|
|
18
18
|
import "./chunks/chunk-LOCJN3BZ.js";
|
|
19
19
|
import "./chunks/chunk-DR24UTRS.js";
|
|
20
20
|
import "./chunks/chunk-TABI4JEU.js";
|
|
@@ -23,8 +23,8 @@ import "./chunks/chunk-SWCULW6S.js";
|
|
|
23
23
|
import "./chunks/chunk-G2FD7S3C.js";
|
|
24
24
|
import "./chunks/chunk-GQZVR5DW.js";
|
|
25
25
|
import "./chunks/chunk-WA5WNP6V.js";
|
|
26
|
-
import "./chunks/chunk-
|
|
27
|
-
import "./chunks/chunk-
|
|
26
|
+
import "./chunks/chunk-QR5XR5XL.js";
|
|
27
|
+
import "./chunks/chunk-5DHOFF4C.js";
|
|
28
28
|
import "./chunks/chunk-3GP3KT5L.js";
|
|
29
29
|
import "./chunks/chunk-CRCD3ODN.js";
|
|
30
30
|
import "./chunks/chunk-W6EXQDV5.js";
|
package/dist/figureData.js
CHANGED
|
@@ -3,10 +3,10 @@ import {
|
|
|
3
3
|
gfaFigureData,
|
|
4
4
|
laidOutGraph,
|
|
5
5
|
walkLayers
|
|
6
|
-
} from "./chunks/chunk-
|
|
6
|
+
} from "./chunks/chunk-TREAOGDV.js";
|
|
7
7
|
import "./chunks/chunk-JMABOQWL.js";
|
|
8
|
-
import "./chunks/chunk-
|
|
9
|
-
import "./chunks/chunk-
|
|
8
|
+
import "./chunks/chunk-VQT3A57T.js";
|
|
9
|
+
import "./chunks/chunk-A7VSP7MQ.js";
|
|
10
10
|
import "./chunks/chunk-A7H753BA.js";
|
|
11
11
|
import "./chunks/chunk-GJU6BJJA.js";
|
|
12
12
|
import "./chunks/chunk-GJLZ2MKE.js";
|
|
@@ -18,9 +18,9 @@ import "./chunks/chunk-TUQKGAK3.js";
|
|
|
18
18
|
import "./chunks/chunk-NMWQUFPF.js";
|
|
19
19
|
import "./chunks/chunk-HNWJ4B7S.js";
|
|
20
20
|
import "./chunks/chunk-77EGQQJU.js";
|
|
21
|
-
import "./chunks/chunk-
|
|
21
|
+
import "./chunks/chunk-WAST7UVB.js";
|
|
22
22
|
import "./chunks/chunk-AI5PTOSV.js";
|
|
23
|
-
import "./chunks/chunk-
|
|
23
|
+
import "./chunks/chunk-S2PUF4SX.js";
|
|
24
24
|
import "./chunks/chunk-LOCJN3BZ.js";
|
|
25
25
|
import "./chunks/chunk-DR24UTRS.js";
|
|
26
26
|
import "./chunks/chunk-TABI4JEU.js";
|
|
@@ -29,8 +29,8 @@ import "./chunks/chunk-SWCULW6S.js";
|
|
|
29
29
|
import "./chunks/chunk-G2FD7S3C.js";
|
|
30
30
|
import "./chunks/chunk-GQZVR5DW.js";
|
|
31
31
|
import "./chunks/chunk-WA5WNP6V.js";
|
|
32
|
-
import "./chunks/chunk-
|
|
33
|
-
import "./chunks/chunk-
|
|
32
|
+
import "./chunks/chunk-QR5XR5XL.js";
|
|
33
|
+
import "./chunks/chunk-5DHOFF4C.js";
|
|
34
34
|
import "./chunks/chunk-3GP3KT5L.js";
|
|
35
35
|
import "./chunks/chunk-CRCD3ODN.js";
|
|
36
36
|
import "./chunks/chunk-W6EXQDV5.js";
|
package/dist/figureScene.js
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
import {
|
|
2
2
|
figureScene
|
|
3
|
-
} from "./chunks/chunk-
|
|
3
|
+
} from "./chunks/chunk-S2PUF4SX.js";
|
|
4
4
|
import "./chunks/chunk-LOCJN3BZ.js";
|
|
5
5
|
import "./chunks/chunk-DR24UTRS.js";
|
|
6
6
|
import "./chunks/chunk-TABI4JEU.js";
|
|
@@ -9,8 +9,8 @@ import "./chunks/chunk-SWCULW6S.js";
|
|
|
9
9
|
import "./chunks/chunk-G2FD7S3C.js";
|
|
10
10
|
import "./chunks/chunk-GQZVR5DW.js";
|
|
11
11
|
import "./chunks/chunk-WA5WNP6V.js";
|
|
12
|
-
import "./chunks/chunk-
|
|
13
|
-
import "./chunks/chunk-
|
|
12
|
+
import "./chunks/chunk-QR5XR5XL.js";
|
|
13
|
+
import "./chunks/chunk-5DHOFF4C.js";
|
|
14
14
|
import "./chunks/chunk-3GP3KT5L.js";
|
|
15
15
|
import "./chunks/chunk-CRCD3ODN.js";
|
|
16
16
|
import "./chunks/chunk-W6EXQDV5.js";
|
package/dist/index.js
CHANGED
|
@@ -13,7 +13,7 @@ import {
|
|
|
13
13
|
tubeMapMismatchAt,
|
|
14
14
|
tubeMapPicture,
|
|
15
15
|
tubeMapTrackAt
|
|
16
|
-
} from "./chunks/chunk-
|
|
16
|
+
} from "./chunks/chunk-5GRF7PJX.js";
|
|
17
17
|
import {
|
|
18
18
|
tubeMapFrame,
|
|
19
19
|
tubeMapNodeAt
|
|
@@ -38,7 +38,7 @@ import {
|
|
|
38
38
|
} from "./chunks/chunk-HSVFCA2J.js";
|
|
39
39
|
import {
|
|
40
40
|
bundleRoutes
|
|
41
|
-
} from "./chunks/chunk-
|
|
41
|
+
} from "./chunks/chunk-C2TAJTUO.js";
|
|
42
42
|
import {
|
|
43
43
|
createForceLayoutCache
|
|
44
44
|
} from "./chunks/chunk-RNYPCQZ3.js";
|
|
@@ -86,7 +86,7 @@ import {
|
|
|
86
86
|
} from "./chunks/chunk-AZFVORTC.js";
|
|
87
87
|
import {
|
|
88
88
|
figureSvg
|
|
89
|
-
} from "./chunks/chunk-
|
|
89
|
+
} from "./chunks/chunk-VWT3WZRQ.js";
|
|
90
90
|
import {
|
|
91
91
|
svgCanvas
|
|
92
92
|
} from "./chunks/chunk-V4YML3GR.js";
|
|
@@ -101,7 +101,7 @@ import {
|
|
|
101
101
|
walkStripApplies,
|
|
102
102
|
walkStripFrame,
|
|
103
103
|
walkStripLabelsTree
|
|
104
|
-
} from "./chunks/chunk-
|
|
104
|
+
} from "./chunks/chunk-ZU54STUX.js";
|
|
105
105
|
import {
|
|
106
106
|
BAR_PX,
|
|
107
107
|
CALL_TICK,
|
|
@@ -159,7 +159,7 @@ import {
|
|
|
159
159
|
import {
|
|
160
160
|
figureData,
|
|
161
161
|
gfaFigureData
|
|
162
|
-
} from "./chunks/chunk-
|
|
162
|
+
} from "./chunks/chunk-TREAOGDV.js";
|
|
163
163
|
import {
|
|
164
164
|
LAYOUT_ENGINES,
|
|
165
165
|
layoutEngine
|
|
@@ -169,8 +169,8 @@ import {
|
|
|
169
169
|
LAYOUT_MODES,
|
|
170
170
|
layoutModeByValue,
|
|
171
171
|
modeUsesLayoutEngine
|
|
172
|
-
} from "./chunks/chunk-
|
|
173
|
-
import "./chunks/chunk-
|
|
172
|
+
} from "./chunks/chunk-VQT3A57T.js";
|
|
173
|
+
import "./chunks/chunk-A7VSP7MQ.js";
|
|
174
174
|
import "./chunks/chunk-A7H753BA.js";
|
|
175
175
|
import "./chunks/chunk-GJU6BJJA.js";
|
|
176
176
|
import "./chunks/chunk-GJLZ2MKE.js";
|
|
@@ -199,7 +199,7 @@ import {
|
|
|
199
199
|
} from "./chunks/chunk-77EGQQJU.js";
|
|
200
200
|
import {
|
|
201
201
|
version
|
|
202
|
-
} from "./chunks/chunk-
|
|
202
|
+
} from "./chunks/chunk-WAST7UVB.js";
|
|
203
203
|
import {
|
|
204
204
|
axisScaleOf,
|
|
205
205
|
contains,
|
|
@@ -208,7 +208,7 @@ import {
|
|
|
208
208
|
viewportOf,
|
|
209
209
|
zoomAbout
|
|
210
210
|
} from "./chunks/chunk-AI5PTOSV.js";
|
|
211
|
-
import "./chunks/chunk-
|
|
211
|
+
import "./chunks/chunk-S2PUF4SX.js";
|
|
212
212
|
import {
|
|
213
213
|
layoutGeometryInputs
|
|
214
214
|
} from "./chunks/chunk-LOCJN3BZ.js";
|
|
@@ -246,11 +246,11 @@ import "./chunks/chunk-WA5WNP6V.js";
|
|
|
246
246
|
import {
|
|
247
247
|
walkRowLabels,
|
|
248
248
|
walkRowsExtent
|
|
249
|
-
} from "./chunks/chunk-
|
|
249
|
+
} from "./chunks/chunk-QR5XR5XL.js";
|
|
250
250
|
import {
|
|
251
251
|
filterSamples,
|
|
252
252
|
walkRows
|
|
253
|
-
} from "./chunks/chunk-
|
|
253
|
+
} from "./chunks/chunk-5DHOFF4C.js";
|
|
254
254
|
import {
|
|
255
255
|
pathColorsLegible,
|
|
256
256
|
pathLegend,
|
|
@@ -5,10 +5,10 @@ import {
|
|
|
5
5
|
tubeMapLayout,
|
|
6
6
|
tubeMapReferenceLayout,
|
|
7
7
|
tubeMapTracks
|
|
8
|
-
} from "../chunks/chunk-
|
|
8
|
+
} from "../chunks/chunk-A7VSP7MQ.js";
|
|
9
9
|
import "../chunks/chunk-A7H753BA.js";
|
|
10
10
|
import "../chunks/chunk-C44YRP5F.js";
|
|
11
|
-
import "../chunks/chunk-
|
|
11
|
+
import "../chunks/chunk-5DHOFF4C.js";
|
|
12
12
|
import "../chunks/chunk-3GP3KT5L.js";
|
|
13
13
|
import "../chunks/chunk-B5X2RLJG.js";
|
|
14
14
|
import "../chunks/chunk-EIY2SKD3.js";
|
|
@@ -4,8 +4,8 @@ import {
|
|
|
4
4
|
walkRowLabels,
|
|
5
5
|
walkRowLayout,
|
|
6
6
|
walkRowsExtent
|
|
7
|
-
} from "../chunks/chunk-
|
|
8
|
-
import "../chunks/chunk-
|
|
7
|
+
} from "../chunks/chunk-QR5XR5XL.js";
|
|
8
|
+
import "../chunks/chunk-5DHOFF4C.js";
|
|
9
9
|
import "../chunks/chunk-B5X2RLJG.js";
|
|
10
10
|
import "../chunks/chunk-EIY2SKD3.js";
|
|
11
11
|
import "../chunks/chunk-ZPZ7GNBT.js";
|
package/dist/layout/walkRows.js
CHANGED
package/dist/layout/walkStrip.js
CHANGED
|
@@ -9,7 +9,7 @@ import {
|
|
|
9
9
|
walkStripApplies,
|
|
10
10
|
walkStripFrame,
|
|
11
11
|
walkStripLabelsTree
|
|
12
|
-
} from "../chunks/chunk-
|
|
12
|
+
} from "../chunks/chunk-ZU54STUX.js";
|
|
13
13
|
import {
|
|
14
14
|
LABELLED_ROW_PX
|
|
15
15
|
} from "../chunks/chunk-XZ6PQBU6.js";
|
|
@@ -18,8 +18,8 @@ import "../chunks/chunk-SWCULW6S.js";
|
|
|
18
18
|
import "../chunks/chunk-G2FD7S3C.js";
|
|
19
19
|
import "../chunks/chunk-GQZVR5DW.js";
|
|
20
20
|
import "../chunks/chunk-WA5WNP6V.js";
|
|
21
|
-
import "../chunks/chunk-
|
|
22
|
-
import "../chunks/chunk-
|
|
21
|
+
import "../chunks/chunk-QR5XR5XL.js";
|
|
22
|
+
import "../chunks/chunk-5DHOFF4C.js";
|
|
23
23
|
import "../chunks/chunk-3GP3KT5L.js";
|
|
24
24
|
import "../chunks/chunk-CRCD3ODN.js";
|
|
25
25
|
import "../chunks/chunk-B5X2RLJG.js";
|
package/dist/layoutModes.js
CHANGED
|
@@ -4,8 +4,8 @@ import {
|
|
|
4
4
|
LAYOUT_MODE_VALUES,
|
|
5
5
|
layoutModeByValue,
|
|
6
6
|
modeUsesLayoutEngine
|
|
7
|
-
} from "./chunks/chunk-
|
|
8
|
-
import "./chunks/chunk-
|
|
7
|
+
} from "./chunks/chunk-VQT3A57T.js";
|
|
8
|
+
import "./chunks/chunk-A7VSP7MQ.js";
|
|
9
9
|
import "./chunks/chunk-A7H753BA.js";
|
|
10
10
|
import "./chunks/chunk-GJU6BJJA.js";
|
|
11
11
|
import "./chunks/chunk-GJLZ2MKE.js";
|
|
@@ -13,8 +13,8 @@ import "./chunks/chunk-MYLAJDKB.js";
|
|
|
13
13
|
import "./chunks/chunk-C44YRP5F.js";
|
|
14
14
|
import "./chunks/chunk-UAFATXYA.js";
|
|
15
15
|
import "./chunks/chunk-3GLG3ZLE.js";
|
|
16
|
-
import "./chunks/chunk-
|
|
17
|
-
import "./chunks/chunk-
|
|
16
|
+
import "./chunks/chunk-QR5XR5XL.js";
|
|
17
|
+
import "./chunks/chunk-5DHOFF4C.js";
|
|
18
18
|
import "./chunks/chunk-3GP3KT5L.js";
|
|
19
19
|
import "./chunks/chunk-B5X2RLJG.js";
|
|
20
20
|
import "./chunks/chunk-VX656OAZ.js";
|
package/dist/tubeMap/bundle.js
CHANGED
|
@@ -1,10 +1,10 @@
|
|
|
1
1
|
import {
|
|
2
2
|
bundleRoutes
|
|
3
|
-
} from "../chunks/chunk-
|
|
4
|
-
import "../chunks/chunk-
|
|
3
|
+
} from "../chunks/chunk-C2TAJTUO.js";
|
|
4
|
+
import "../chunks/chunk-A7VSP7MQ.js";
|
|
5
5
|
import "../chunks/chunk-A7H753BA.js";
|
|
6
6
|
import "../chunks/chunk-C44YRP5F.js";
|
|
7
|
-
import "../chunks/chunk-
|
|
7
|
+
import "../chunks/chunk-5DHOFF4C.js";
|
|
8
8
|
import "../chunks/chunk-3GP3KT5L.js";
|
|
9
9
|
import "../chunks/chunk-B5X2RLJG.js";
|
|
10
10
|
import "../chunks/chunk-EIY2SKD3.js";
|
package/dist/tubeMap/coarsen.js
CHANGED
|
@@ -1,11 +1,11 @@
|
|
|
1
1
|
import {
|
|
2
2
|
coarsenTubeMap,
|
|
3
3
|
lastAtMost
|
|
4
|
-
} from "../chunks/chunk-
|
|
5
|
-
import "../chunks/chunk-
|
|
4
|
+
} from "../chunks/chunk-QTDBOJJO.js";
|
|
5
|
+
import "../chunks/chunk-A7VSP7MQ.js";
|
|
6
6
|
import "../chunks/chunk-A7H753BA.js";
|
|
7
7
|
import "../chunks/chunk-C44YRP5F.js";
|
|
8
|
-
import "../chunks/chunk-
|
|
8
|
+
import "../chunks/chunk-5DHOFF4C.js";
|
|
9
9
|
import "../chunks/chunk-3GP3KT5L.js";
|
|
10
10
|
import "../chunks/chunk-B5X2RLJG.js";
|
|
11
11
|
import "../chunks/chunk-EIY2SKD3.js";
|
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
import {
|
|
2
2
|
lastAtMost
|
|
3
|
-
} from "../chunks/chunk-
|
|
3
|
+
} from "../chunks/chunk-QTDBOJJO.js";
|
|
4
4
|
import {
|
|
5
5
|
boxX,
|
|
6
6
|
referenceBoxes
|
|
7
7
|
} from "../chunks/chunk-HSVFCA2J.js";
|
|
8
|
-
import "../chunks/chunk-
|
|
8
|
+
import "../chunks/chunk-A7VSP7MQ.js";
|
|
9
9
|
import "../chunks/chunk-A7H753BA.js";
|
|
10
10
|
import "../chunks/chunk-C44YRP5F.js";
|
|
11
|
-
import "../chunks/chunk-
|
|
11
|
+
import "../chunks/chunk-5DHOFF4C.js";
|
|
12
12
|
import "../chunks/chunk-3GP3KT5L.js";
|
|
13
13
|
import {
|
|
14
14
|
pathOrigin
|
package/dist/tubeMap/draw.js
CHANGED
|
@@ -8,12 +8,12 @@ import {
|
|
|
8
8
|
tubeMapMismatchAt,
|
|
9
9
|
tubeMapPicture,
|
|
10
10
|
tubeMapTrackAt
|
|
11
|
-
} from "../chunks/chunk-
|
|
11
|
+
} from "../chunks/chunk-5GRF7PJX.js";
|
|
12
12
|
import "../chunks/chunk-MYDHU2UV.js";
|
|
13
13
|
import "../chunks/chunk-BX4AUMZE.js";
|
|
14
14
|
import "../chunks/chunk-A7H753BA.js";
|
|
15
15
|
import "../chunks/chunk-C44YRP5F.js";
|
|
16
|
-
import "../chunks/chunk-
|
|
16
|
+
import "../chunks/chunk-5DHOFF4C.js";
|
|
17
17
|
import "../chunks/chunk-B5X2RLJG.js";
|
|
18
18
|
import "../chunks/chunk-EIY2SKD3.js";
|
|
19
19
|
import "../chunks/chunk-ZPZ7GNBT.js";
|
|
@@ -35,7 +35,7 @@ export interface WalkRow {
|
|
|
35
35
|
complete: boolean;
|
|
36
36
|
stop?: WalkStop;
|
|
37
37
|
runs: WalkRun[];
|
|
38
|
-
visits
|
|
38
|
+
visits?: WalkVisit[];
|
|
39
39
|
axis?: WalkAxis;
|
|
40
40
|
}
|
|
41
41
|
export interface WalkRows {
|
|
@@ -52,4 +52,6 @@ export declare function referenceWalkName(graph: Pick<Graph, 'nodes' | 'paths' |
|
|
|
52
52
|
export declare function walkRows(graph: Graph, region?: {
|
|
53
53
|
start: number;
|
|
54
54
|
end: number;
|
|
55
|
-
}, unit?: number
|
|
55
|
+
}, unit?: number, o?: {
|
|
56
|
+
visits?: boolean;
|
|
57
|
+
}): WalkRows | undefined;
|
package/dist/types/version.d.ts
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
export declare const version = "11.
|
|
1
|
+
export declare const version = "11.2.0";
|
package/dist/version.js
CHANGED
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/bandage-core",
|
|
3
|
-
"version": "11.
|
|
3
|
+
"version": "11.2.0",
|
|
4
4
|
"description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
|
|
5
5
|
"license": "GPL-3.0-or-later",
|
|
6
6
|
"repository": {
|