@jbrowse/bandage-core 11.0.0 → 11.1.0

package/dist/chunks/{chunk-BS6HPYCZ.js → chunk-77EGQQJU.js}

@@ -50,6 +50,7 @@ function genePins(graph, genes, positions) {
       nodeIds.add(node.id);
       covered += Math.min(nodeEnd, gene.end) - Math.max(nodeStart, gene.start);
       const nodeParts = [];
+      const stretches = [];
       for (const exon of gene.exons) {
         const a = Math.max(exon.start, nodeStart);
         const b = Math.min(exon.end, nodeEnd);
@@ -65,10 +66,11 @@ function genePins(graph, genes, positions) {
           stretch.push({ ...stretch[0] });
         }
         nodeParts.push(svgPath(stretch));
+        stretches.push(stretch);
       }
       if (nodeParts.length > 0) {
         parts.push(...nodeParts);
-        exonsByNode.push({ nodeId: node.id, d: nodeParts.join("") });
+        exonsByNode.push({ nodeId: node.id, d: nodeParts.join(""), stretches });
       }
       const pinBp = Math.min(Math.max(mid, nodeStart), nodeEnd);
       const distance = Math.abs(pinBp - mid);

package/dist/chunks/chunk-7BTO7MZS.js

@@ -0,0 +1,46 @@
+import {
+  genesFromText
+} from "./chunk-G6UIYQZR.js";
+import {
+  featuresOnBackbone,
+  graphBackbone,
+  refNameBinding
+} from "./chunk-234NFZS4.js";
+
+// src/genes/backboneGenes.ts
+async function backboneGenes(graph, source) {
+  const backbone = graphBackbone(graph);
+  if (!backbone) {
+    return { genes: [] };
+  }
+  const bind = refNameBinding(
+    backbone.contigs.map((c) => c.refName),
+    source.refNames
+  );
+  let names;
+  let features;
+  if ("indexed" in source) {
+    names = await source.indexed.getReferenceSequenceNames();
+    const lines = [];
+    for (const contig of backbone.contigs) {
+      const name = names.find((n) => bind(n) === contig.refName);
+      if (name !== void 0) {
+        await source.indexed.getLines(name, contig.start, contig.end, {
+          lineCallback: (line) => lines.push(line)
+        });
+      }
+    }
+    features = genesFromText(lines.join("\n"), source.format);
+  } else {
+    features = genesFromText(source.text, source.format);
+    names = [...new Set(features.map((f) => f.refName))];
+  }
+  return {
+    genes: featuresOnBackbone(features, backbone, source.refNames),
+    unbound: names.some((name) => bind(name) !== void 0) ? void 0 : { names, contigs: backbone.contigs.map((c) => c.contig) }
+  };
+}
+
+export {
+  backboneGenes
+};

package/dist/chunks/{chunk-CIDSF47D.js → chunk-DEDD7TFJ.js}

@@ -22,6 +22,7 @@ function labelOf(path) {
 var NodeTable = class {
   constructor(graph) {
     this.index = /* @__PURE__ */ new Map();
+    this.ids = [];
     this.lengths = [];
     this.onReference = new Uint8Array(0);
     this.referenceStart = new Float64Array(0);
@@ -35,6 +36,7 @@ var NodeTable = class {
     if (i === void 0) {
       i = this.lengths.length;
       this.index.set(id, i);
+      this.ids.push(id);
       this.lengths.push(0);
     }
     return i;
@@ -224,8 +226,15 @@ function walkRows(graph, region, unit) {
     const contig = path.contig ?? panSNContig(pathOrigin(path.name).name);
     const axisSpan = stepSpan(pieces, table, from < 0 ? 0 : from);
     const axis = !axisSpan ? void 0 : from < 0 ? { contig, start: axisSpan.start, reversed: false } : from < to ? { contig, start: axisSpan.end, reversed: false } : { contig, start: axisSpan.start, reversed: true };
-    const { lengths, onReference, referenceStart: referenceStart2, referenceEnd } = table;
+    const {
+      ids: nodeIds,
+      lengths,
+      onReference,
+      referenceStart: referenceStart2,
+      referenceEnd
+    } = table;
     const runs = [];
+    const visits = [];
     let last;
     let bp = 0;
     let offReferenceBp = 0;
@@ -252,6 +261,7 @@ function walkRows(graph, region, unit) {
       }
       const len = lengths[node];
       const on = onReference[node] === 1;
+      visits.push({ node: nodeIds[node], start: bp, onReference: on });
       const at = last?.referenceStart;
       const forward = on && at !== void 0 && step >= 0 && at + last.bp === referenceStart2[node];
       const backward = on && at !== void 0 && step <= 0 && referenceEnd[node] === at;
@@ -290,6 +300,7 @@ function walkRows(graph, region, unit) {
       complete,
       stop,
       runs,
+      visits,
       axis
     };
   };

package/dist/chunks/{chunk-C3NT37C3.js → chunk-DR24UTRS.js}

@@ -1,7 +1,7 @@
 import {
   encodedColor,
   resolveEncoding
-} from "./chunk-DO62DG26.js";
+} from "./chunk-TABI4JEU.js";
 import {
   pathOrigin
 } from "./chunk-B5X2RLJG.js";

package/dist/chunks/{chunk-CZT33FZG.js → chunk-IVOK5V3H.js}

@@ -4,7 +4,7 @@ import {
 import {
   facetLifts,
   walkLift
-} from "./chunk-C3NT37C3.js";
+} from "./chunk-DR24UTRS.js";
 import {
   walkKey
 } from "./chunk-D4ZFRBB4.js";
@@ -14,7 +14,7 @@ import {
 } from "./chunk-SWCULW6S.js";
 import {
   walkRowsExtent
-} from "./chunk-OLKXMZ6J.js";
+} from "./chunk-YHJ5JLBI.js";
 import {
   pathLegend,
   walkLabelsOf

package/dist/chunks/{chunk-TEF3NBG3.js → chunk-IZ6Y5D23.js}

@@ -10,7 +10,7 @@ import {
 import {
   READOUT_ROOM,
   longestBar
-} from "./chunk-OLKXMZ6J.js";
+} from "./chunk-YHJ5JLBI.js";
 import {
   pathOrigin
 } from "./chunk-B5X2RLJG.js";

package/dist/chunks/{chunk-5LTZVKZQ.js → chunk-JFHYG25O.js}

@@ -5,7 +5,7 @@ import {
   stripGeneGaps,
   walkStripFrame,
   walkStripLabelsTree
-} from "./chunk-TEF3NBG3.js";
+} from "./chunk-IZ6Y5D23.js";
 import {
   walkRowsKey,
   walkRowsKeyTree,
@@ -19,9 +19,6 @@ import {
   exonOutlineTree,
   exonStretches
 } from "./chunk-JSUCGZ6K.js";
-import {
-  genePins
-} from "./chunk-BS6HPYCZ.js";
 import {
   geneLabelCandidates
 } from "./chunk-PSCSZSVK.js";
@@ -32,24 +29,27 @@ import {
   escapeAttr,
   serializeEl
 } from "./chunk-H2H4Y3TV.js";
+import {
+  genePins
+} from "./chunk-77EGQQJU.js";
 import {
   version
-} from "./chunk-6OP4HPXG.js";
+} from "./chunk-Y3FDMDNT.js";
 import {
   axisScaleOf
 } from "./chunk-AI5PTOSV.js";
 import {
   figureScene
-} from "./chunk-CZT33FZG.js";
+} from "./chunk-IVOK5V3H.js";
 import {
   encodingStops
-} from "./chunk-DO62DG26.js";
+} from "./chunk-TABI4JEU.js";
 import {
   rangeText
 } from "./chunk-D4ZFRBB4.js";
 import {
   walkRowLabels
-} from "./chunk-OLKXMZ6J.js";
+} from "./chunk-YHJ5JLBI.js";
 import {
   nodeInk
 } from "./chunk-CRCD3ODN.js";

package/dist/chunks/{chunk-PK5QQOMN.js → chunk-LMH5KVJZ.js}

@@ -5,7 +5,7 @@ import {
 } from "./chunk-A7H753BA.js";
 import {
   referenceWalkName
-} from "./chunk-CIDSF47D.js";
+} from "./chunk-DEDD7TFJ.js";
 import {
   pathCssColor,
   pathGreyCssColor

package/dist/chunks/{chunk-EDWU7OM4.js → chunk-NGUM77EP.js}

@@ -3,7 +3,7 @@ import {
   hasTubeMapPaths,
   tubeMapLayout,
   tubeMapReferenceLayout
-} from "./chunk-PK5QQOMN.js";
+} from "./chunk-LMH5KVJZ.js";
 import {
   sampleRowLayout
 } from "./chunk-GJU6BJJA.js";
@@ -15,7 +15,7 @@ import {
 } from "./chunk-UAFATXYA.js";
 import {
   walkRowLayout
-} from "./chunk-OLKXMZ6J.js";
+} from "./chunk-YHJ5JLBI.js";
 import {
   isBackbone,
   isOffReference

package/dist/chunks/{chunk-CTZRIDMY.js → chunk-OI4YVAMM.js}

@@ -3,19 +3,25 @@ import {
 } from "./chunk-JMABOQWL.js";
 import {
   layoutModeByValue
-} from "./chunk-EDWU7OM4.js";
+} from "./chunk-NGUM77EP.js";
 import {
   parseRegion
 } from "./chunk-TUQKGAK3.js";
+import {
+  genePins
+} from "./chunk-77EGQQJU.js";
 import {
   version
-} from "./chunk-6OP4HPXG.js";
+} from "./chunk-Y3FDMDNT.js";
 import {
   axisScaleOf
 } from "./chunk-AI5PTOSV.js";
 import {
   figureScene
-} from "./chunk-CZT33FZG.js";
+} from "./chunk-IVOK5V3H.js";
+import {
+  encodingStops
+} from "./chunk-TABI4JEU.js";
 import {
   abgrAlpha,
   abgrBlue,
@@ -76,21 +82,58 @@ function figureData(graph, layout, o = {}) {
   }
   const axis = axisScaleOf(fit.scale, pixelRows);
   const panels = [];
+  const keys = columns(["panel", "walk", "note", "scale", "stops"]);
+  const pushKey = (walk, panel) => {
+    const key = keyText(walk);
+    keys.push({
+      panel,
+      walk: labelOf(walk.name),
+      note: key.note,
+      scale: key.scale ?? "",
+      stops: encodingStops(walk.encoding).map((s) => cssHex(s.abgr)).join(",")
+    });
+    return key;
+  };
   if (facets) {
     const ordered = facets.panels.map((panel, i) => ({ panel, cell: facets.place.cells[i] })).sort((a, b) => a.cell - b.cell);
     for (const { panel } of ordered) {
       const walk = panel.walks[0];
-      const key = keyText(walk);
+      const name = labelOf(walk.name);
+      const key = pushKey(walk, name);
       panels.push({
         highlight: panel,
-        name: labelOf(walk.name),
+        name,
         key: key.note,
         range: key.scale ?? ""
       });
     }
   } else {
+    for (const walk of lift?.walks ?? []) {
+      pushKey(walk, "");
+    }
     panels.push({ highlight: lift, name: "", key: "", range: "" });
   }
+  const pins = columns(["gene", "x", "y", "covered", "bp"]);
+  const exons = columns(["gene", "node", "stretch", "x", "y"]);
+  let stretch = 0;
+  for (const pin of o.genes?.length ? genePins(graph, o.genes, layout.nodePositions) : []) {
+    const gene = pin.gene.name;
+    pins.push({
+      gene,
+      x: pin.at.x,
+      y: pin.at.y,
+      covered: pin.covered,
+      bp: pin.gene.end - pin.gene.start
+    });
+    for (const { nodeId, stretches } of pin.exonsByNode) {
+      for (const points of stretches) {
+        stretch++;
+        for (const { x, y } of points) {
+          exons.push({ gene, node: nodeId, stretch, x, y });
+        }
+      }
+    }
+  }
   const nodes = columns([
     "panel",
     "node",
@@ -198,6 +241,10 @@ function figureData(graph, layout, o = {}) {
       key: panels.map((p) => p.key),
       range: panels.map((p) => p.range)
     },
+    keys: keys.out,
+    pins: pins.out,
+    exons: exons.out,
+    walkNames: [...new Set((graph.paths ?? []).map((p) => p.name))],
     nodes: nodes.out,
     edges: edges.out,
     arrows: arrows.out,

package/dist/chunks/{chunk-BIOKXS3M.js → chunk-RETNT73O.js}

@@ -1,6 +1,6 @@
 import {
   pathSteps
-} from "./chunk-PK5QQOMN.js";
+} from "./chunk-LMH5KVJZ.js";
 import {
   pathOrigin
 } from "./chunk-B5X2RLJG.js";

package/dist/chunks/{chunk-DO62DG26.js → chunk-TABI4JEU.js}

@@ -88,10 +88,12 @@ function encodedColor({ field, scheme }, t) {
 }
 var NO_VALUE_COLOR = REFERENCE_RAMP_ALT_COLOR;
 function encodingStops({ field, scheme }) {
-  return field === "walk" ? [{ offset: 0, color: schemeCss(scheme, BASE_T) }] : Array.from({ length: 7 }, (_, i) => ({
-    offset: i / 6,
-    color: schemeCss(scheme, i / 6)
-  }));
+  const stop = (offset, t) => ({
+    offset,
+    color: schemeCss(scheme, t),
+    abgr: schemeColor(scheme, t)
+  });
+  return field === "walk" ? [stop(0, BASE_T)] : Array.from({ length: 7 }, (_, i) => stop(i / 6, i / 6));
 }
 function encodingSwatchCss(encoding) {
   const stops = encodingStops(encoding);

package/dist/chunks/{chunk-EY2ZGSCP.js → chunk-V5MAL7LU.js}

@@ -1,6 +1,6 @@
 import {
   pathSteps
-} from "./chunk-PK5QQOMN.js";
+} from "./chunk-LMH5KVJZ.js";
 import {
   pathOrigin
 } from "./chunk-B5X2RLJG.js";

package/dist/chunks/{chunk-6OP4HPXG.js → chunk-Y3FDMDNT.js}

@@ -1,5 +1,5 @@
 // src/version.ts
-var version = "11.0.0";
+var version = "11.1.0";
 
 export {
   version

package/dist/chunks/{chunk-OLKXMZ6J.js → chunk-YHJ5JLBI.js}

@@ -1,6 +1,6 @@
 import {
   walkRows
-} from "./chunk-CIDSF47D.js";
+} from "./chunk-DEDD7TFJ.js";
 import {
   ROW_HEIGHT_PX
 } from "./chunk-CPMHA4W5.js";

package/dist/chunks/{chunk-L5IETLWP.js → chunk-ZUL52ZX2.js}

@@ -9,7 +9,7 @@ import {
 } from "./chunk-A7H753BA.js";
 import {
   referenceWalkName
-} from "./chunk-CIDSF47D.js";
+} from "./chunk-DEDD7TFJ.js";
 import {
   pathOrigin
 } from "./chunk-B5X2RLJG.js";

package/dist/cli/figure.js

@@ -3,13 +3,14 @@ import {
   decodeText
 } from "../chunks/chunk-O4EGE27I.js";
 import {
-  genesFromText
-} from "../chunks/chunk-G6UIYQZR.js";
+  backboneGenes
+} from "../chunks/chunk-7BTO7MZS.js";
+import "../chunks/chunk-G6UIYQZR.js";
 import {
   figureSvg
-} from "../chunks/chunk-5LTZVKZQ.js";
+} from "../chunks/chunk-JFHYG25O.js";
 import "../chunks/chunk-V4YML3GR.js";
-import "../chunks/chunk-TEF3NBG3.js";
+import "../chunks/chunk-IZ6Y5D23.js";
 import {
   genesOnRow,
   placeRowGenes
@@ -17,7 +18,6 @@ import {
 import "../chunks/chunk-EJRJAAN7.js";
 import "../chunks/chunk-RBCE2OQH.js";
 import "../chunks/chunk-JSUCGZ6K.js";
-import "../chunks/chunk-BS6HPYCZ.js";
 import "../chunks/chunk-PSCSZSVK.js";
 import "../chunks/chunk-OMUPUB4J.js";
 import "../chunks/chunk-3VCKBSML.js";
@@ -25,15 +25,15 @@ import "../chunks/chunk-H2H4Y3TV.js";
 import {
   laidOutGraph,
   walkLayers
-} from "../chunks/chunk-CTZRIDMY.js";
+} from "../chunks/chunk-OI4YVAMM.js";
 import {
   LAYOUT_ENGINE_VALUES,
   isLayoutEngineKind
 } from "../chunks/chunk-JMABOQWL.js";
 import {
   LAYOUT_MODES
-} from "../chunks/chunk-EDWU7OM4.js";
-import "../chunks/chunk-PK5QQOMN.js";
+} from "../chunks/chunk-NGUM77EP.js";
+import "../chunks/chunk-LMH5KVJZ.js";
 import "../chunks/chunk-A7H753BA.js";
 import "../chunks/chunk-GJU6BJJA.js";
 import "../chunks/chunk-GJLZ2MKE.js";
@@ -50,22 +50,23 @@ import {
 } from "../chunks/chunk-TUQKGAK3.js";
 import "../chunks/chunk-NMWQUFPF.js";
 import "../chunks/chunk-HNWJ4B7S.js";
-import "../chunks/chunk-6OP4HPXG.js";
+import "../chunks/chunk-77EGQQJU.js";
+import "../chunks/chunk-Y3FDMDNT.js";
 import "../chunks/chunk-AI5PTOSV.js";
-import "../chunks/chunk-CZT33FZG.js";
+import "../chunks/chunk-IVOK5V3H.js";
 import "../chunks/chunk-LOCJN3BZ.js";
-import "../chunks/chunk-C3NT37C3.js";
-import "../chunks/chunk-DO62DG26.js";
+import "../chunks/chunk-DR24UTRS.js";
+import "../chunks/chunk-TABI4JEU.js";
 import "../chunks/chunk-D4ZFRBB4.js";
 import "../chunks/chunk-SWCULW6S.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-GQZVR5DW.js";
 import "../chunks/chunk-WA5WNP6V.js";
-import "../chunks/chunk-OLKXMZ6J.js";
+import "../chunks/chunk-YHJ5JLBI.js";
 import {
   filterSamples,
   walkRows
-} from "../chunks/chunk-CIDSF47D.js";
+} from "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-3GP3KT5L.js";
 import "../chunks/chunk-CRCD3ODN.js";
 import "../chunks/chunk-W6EXQDV5.js";
@@ -80,11 +81,7 @@ import "../chunks/chunk-5I3K4R2G.js";
 import "../chunks/chunk-3XSRT7RQ.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-VX656OAZ.js";
-import {
-  featuresOnBackbone,
-  graphBackbone,
-  refNameBinding
-} from "../chunks/chunk-234NFZS4.js";
+import "../chunks/chunk-234NFZS4.js";
 import "../chunks/chunk-DZR37KXT.js";
 import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";
@@ -142,51 +139,28 @@ async function text(location) {
   return decodeText(bytes);
 }
 async function readGenes(genes, graph, resolve) {
-  const backbone = graphBackbone(graph);
-  if (!backbone) {
-    return [];
-  }
-  const bind = refNameBinding(
-    backbone.contigs.map((c) => c.refName),
-    genes.refNames
-  );
-  const { names, features } = genes.index ? await indexedGenes(
-    resolve(genes.file),
-    resolve(genes.index),
-    genes.format ?? (/\.bed(\.gz)?$/i.test(genes.file) ? "bed" : "gff3"),
-    backbone.contigs,
-    bind
-  ) : namedBy(genesFromText(await text(resolve(genes.file)), genes.format));
-  if (!names.some((name) => bind(name) !== void 0)) {
+  const file = resolve(genes.file);
+  const read = await backboneGenes(graph, {
+    ...genes.index ? {
+      indexed: tabixFile(file, resolve(genes.index)),
+      format: genes.format ?? (/\.bed(\.gz)?$/i.test(genes.file) ? "bed" : "gff3")
+    } : { text: await text(file), format: genes.format },
+    refNames: genes.refNames
+  });
+  if (read.unbound) {
+    const { names, contigs } = read.unbound;
     const shown = names.slice(0, 4).join(", ");
     console.warn(
-      `bandage-figure: no sequence in ${genes.file} names ${backbone.contigs.map((c) => c.contig).join(", ")}` + (names.length ? `; it has ${shown}${names.length > 4 ? ", \u2026" : ""}` : "") + `. Give the file's name under genes.refNames, as { "chr6": "NC_000006.12" }`
+      `bandage-figure: no sequence in ${genes.file} names ${contigs.join(", ")}` + (names.length ? `; it has ${shown}${names.length > 4 ? ", \u2026" : ""}` : "") + `. Give the file's name under genes.refNames, as { "chr6": "NC_000006.12" }`
     );
   }
-  return featuresOnBackbone(features, backbone, genes.refNames);
-}
-function namedBy(features) {
-  return { names: [...new Set(features.map((f) => f.refName))], features };
+  return read.genes;
 }
-async function indexedGenes(file, index, format, contigs, bind) {
+function tabixFile(file, index) {
   const csi = index.endsWith(".csi");
-  const tabix = new TabixIndexedFile(
+  return new TabixIndexedFile(
     isUrl(file) ? { url: file, ...csi ? { csiUrl: index } : { tbiUrl: index } } : { path: file, ...csi ? { csiPath: index } : { tbiPath: index } }
   );
-  const names = await tabix.getReferenceSequenceNames();
-  const lines = [];
-  for (const contig of contigs) {
-    const name = names.find((n) => bind(n) === contig.refName);
-    if (name !== void 0) {
-      await tabix.getLines(name, contig.start, contig.end, {
-        lineCallback: (line) => lines.push(line)
-      });
-    }
-  }
-  return {
-    names,
-    features: genesFromText(lines.join("\n"), format)
-  };
 }
 async function exists(location) {
   try {

package/dist/figure.js

@@ -1,30 +1,30 @@
 import {
   figureSvg
-} from "./chunks/chunk-5LTZVKZQ.js";
+} from "./chunks/chunk-JFHYG25O.js";
 import "./chunks/chunk-V4YML3GR.js";
-import "./chunks/chunk-TEF3NBG3.js";
+import "./chunks/chunk-IZ6Y5D23.js";
 import "./chunks/chunk-XZ6PQBU6.js";
 import "./chunks/chunk-EJRJAAN7.js";
 import "./chunks/chunk-RBCE2OQH.js";
 import "./chunks/chunk-JSUCGZ6K.js";
-import "./chunks/chunk-BS6HPYCZ.js";
 import "./chunks/chunk-PSCSZSVK.js";
 import "./chunks/chunk-OMUPUB4J.js";
 import "./chunks/chunk-3VCKBSML.js";
 import "./chunks/chunk-H2H4Y3TV.js";
-import "./chunks/chunk-6OP4HPXG.js";
+import "./chunks/chunk-77EGQQJU.js";
+import "./chunks/chunk-Y3FDMDNT.js";
 import "./chunks/chunk-AI5PTOSV.js";
-import "./chunks/chunk-CZT33FZG.js";
+import "./chunks/chunk-IVOK5V3H.js";
 import "./chunks/chunk-LOCJN3BZ.js";
-import "./chunks/chunk-C3NT37C3.js";
-import "./chunks/chunk-DO62DG26.js";
+import "./chunks/chunk-DR24UTRS.js";
+import "./chunks/chunk-TABI4JEU.js";
 import "./chunks/chunk-D4ZFRBB4.js";
 import "./chunks/chunk-SWCULW6S.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-GQZVR5DW.js";
 import "./chunks/chunk-WA5WNP6V.js";
-import "./chunks/chunk-OLKXMZ6J.js";
-import "./chunks/chunk-CIDSF47D.js";
+import "./chunks/chunk-YHJ5JLBI.js";
+import "./chunks/chunk-DEDD7TFJ.js";
 import "./chunks/chunk-3GP3KT5L.js";
 import "./chunks/chunk-CRCD3ODN.js";
 import "./chunks/chunk-W6EXQDV5.js";

package/dist/figureData.js

@@ -3,10 +3,10 @@ import {
   gfaFigureData,
   laidOutGraph,
   walkLayers
-} from "./chunks/chunk-CTZRIDMY.js";
+} from "./chunks/chunk-OI4YVAMM.js";
 import "./chunks/chunk-JMABOQWL.js";
-import "./chunks/chunk-EDWU7OM4.js";
-import "./chunks/chunk-PK5QQOMN.js";
+import "./chunks/chunk-NGUM77EP.js";
+import "./chunks/chunk-LMH5KVJZ.js";
 import "./chunks/chunk-A7H753BA.js";
 import "./chunks/chunk-GJU6BJJA.js";
 import "./chunks/chunk-GJLZ2MKE.js";
@@ -17,19 +17,20 @@ import "./chunks/chunk-3GLG3ZLE.js";
 import "./chunks/chunk-TUQKGAK3.js";
 import "./chunks/chunk-NMWQUFPF.js";
 import "./chunks/chunk-HNWJ4B7S.js";
-import "./chunks/chunk-6OP4HPXG.js";
+import "./chunks/chunk-77EGQQJU.js";
+import "./chunks/chunk-Y3FDMDNT.js";
 import "./chunks/chunk-AI5PTOSV.js";
-import "./chunks/chunk-CZT33FZG.js";
+import "./chunks/chunk-IVOK5V3H.js";
 import "./chunks/chunk-LOCJN3BZ.js";
-import "./chunks/chunk-C3NT37C3.js";
-import "./chunks/chunk-DO62DG26.js";
+import "./chunks/chunk-DR24UTRS.js";
+import "./chunks/chunk-TABI4JEU.js";
 import "./chunks/chunk-D4ZFRBB4.js";
 import "./chunks/chunk-SWCULW6S.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-GQZVR5DW.js";
 import "./chunks/chunk-WA5WNP6V.js";
-import "./chunks/chunk-OLKXMZ6J.js";
-import "./chunks/chunk-CIDSF47D.js";
+import "./chunks/chunk-YHJ5JLBI.js";
+import "./chunks/chunk-DEDD7TFJ.js";
 import "./chunks/chunk-3GP3KT5L.js";
 import "./chunks/chunk-CRCD3ODN.js";
 import "./chunks/chunk-W6EXQDV5.js";

package/dist/figureScene.js

@@ -1,16 +1,16 @@
 import {
   figureScene
-} from "./chunks/chunk-CZT33FZG.js";
+} from "./chunks/chunk-IVOK5V3H.js";
 import "./chunks/chunk-LOCJN3BZ.js";
-import "./chunks/chunk-C3NT37C3.js";
-import "./chunks/chunk-DO62DG26.js";
+import "./chunks/chunk-DR24UTRS.js";
+import "./chunks/chunk-TABI4JEU.js";
 import "./chunks/chunk-D4ZFRBB4.js";
 import "./chunks/chunk-SWCULW6S.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-GQZVR5DW.js";
 import "./chunks/chunk-WA5WNP6V.js";
-import "./chunks/chunk-OLKXMZ6J.js";
-import "./chunks/chunk-CIDSF47D.js";
+import "./chunks/chunk-YHJ5JLBI.js";
+import "./chunks/chunk-DEDD7TFJ.js";
 import "./chunks/chunk-3GP3KT5L.js";
 import "./chunks/chunk-CRCD3ODN.js";
 import "./chunks/chunk-W6EXQDV5.js";

package/dist/genes/backboneGenes.js

@@ -0,0 +1,12 @@
+import {
+  backboneGenes
+} from "../chunks/chunk-7BTO7MZS.js";
+import "../chunks/chunk-G6UIYQZR.js";
+import "../chunks/chunk-234NFZS4.js";
+import "../chunks/chunk-BSOZW3FC.js";
+import "../chunks/chunk-RJWPJCIB.js";
+import "../chunks/chunk-HOAIOEI7.js";
+import "../chunks/chunk-4XWZNPQ2.js";
+export {
+  backboneGenes
+};

package/dist/genes/genePins.js

@@ -1,6 +1,6 @@
 import {
   genePins
-} from "../chunks/chunk-BS6HPYCZ.js";
+} from "../chunks/chunk-77EGQQJU.js";
 import "../chunks/chunk-BZFOFC4D.js";
 import "../chunks/chunk-UBQSRCWR.js";
 import "../chunks/chunk-CPMHA4W5.js";

package/dist/index.js

@@ -13,7 +13,7 @@ import {
   tubeMapMismatchAt,
   tubeMapPicture,
   tubeMapTrackAt
-} from "./chunks/chunk-L5IETLWP.js";
+} from "./chunks/chunk-ZUL52ZX2.js";
 import {
   tubeMapFrame,
   tubeMapNodeAt
@@ -38,7 +38,7 @@ import {
 } from "./chunks/chunk-HSVFCA2J.js";
 import {
   bundleRoutes
-} from "./chunks/chunk-BIOKXS3M.js";
+} from "./chunks/chunk-RETNT73O.js";
 import {
   createForceLayoutCache
 } from "./chunks/chunk-RNYPCQZ3.js";
@@ -52,6 +52,9 @@ import {
 import {
   bubbleSubgraph
 } from "./chunks/chunk-PNMJFFNB.js";
+import {
+  backboneGenes
+} from "./chunks/chunk-7BTO7MZS.js";
 import {
   genesFromBed,
   genesFromGff3Lines,
@@ -83,7 +86,7 @@ import {
 } from "./chunks/chunk-AZFVORTC.js";
 import {
   figureSvg
-} from "./chunks/chunk-5LTZVKZQ.js";
+} from "./chunks/chunk-JFHYG25O.js";
 import {
   svgCanvas
 } from "./chunks/chunk-V4YML3GR.js";
@@ -98,7 +101,7 @@ import {
   walkStripApplies,
   walkStripFrame,
   walkStripLabelsTree
-} from "./chunks/chunk-TEF3NBG3.js";
+} from "./chunks/chunk-IZ6Y5D23.js";
 import {
   BAR_PX,
   CALL_TICK,
@@ -138,9 +141,6 @@ import {
   exonOutlineTree,
   exonStretches
 } from "./chunks/chunk-JSUCGZ6K.js";
-import {
-  genePins
-} from "./chunks/chunk-BS6HPYCZ.js";
 import {
   HALO_FACTOR,
   LEGEND_INSET_PX,
@@ -159,7 +159,7 @@ import {
 import {
   figureData,
   gfaFigureData
-} from "./chunks/chunk-CTZRIDMY.js";
+} from "./chunks/chunk-OI4YVAMM.js";
 import {
   LAYOUT_ENGINES,
   layoutEngine
@@ -169,8 +169,8 @@ import {
   LAYOUT_MODES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-EDWU7OM4.js";
-import "./chunks/chunk-PK5QQOMN.js";
+} from "./chunks/chunk-NGUM77EP.js";
+import "./chunks/chunk-LMH5KVJZ.js";
 import "./chunks/chunk-A7H753BA.js";
 import "./chunks/chunk-GJU6BJJA.js";
 import "./chunks/chunk-GJLZ2MKE.js";
@@ -194,9 +194,12 @@ import {
   resolveReferenceSample
 } from "./chunks/chunk-NMWQUFPF.js";
 import "./chunks/chunk-HNWJ4B7S.js";
+import {
+  genePins
+} from "./chunks/chunk-77EGQQJU.js";
 import {
   version
-} from "./chunks/chunk-6OP4HPXG.js";
+} from "./chunks/chunk-Y3FDMDNT.js";
 import {
   axisScaleOf,
   contains,
@@ -205,7 +208,7 @@ import {
   viewportOf,
   zoomAbout
 } from "./chunks/chunk-AI5PTOSV.js";
-import "./chunks/chunk-CZT33FZG.js";
+import "./chunks/chunk-IVOK5V3H.js";
 import {
   layoutGeometryInputs
 } from "./chunks/chunk-LOCJN3BZ.js";
@@ -213,7 +216,7 @@ import {
   facetLifts,
   walkHighlight,
   walkLift
-} from "./chunks/chunk-C3NT37C3.js";
+} from "./chunks/chunk-DR24UTRS.js";
 import {
   WALK_FIELDS,
   WALK_SCHEMES,
@@ -221,7 +224,7 @@ import {
   encodingSwatchCss,
   resolveEncoding,
   schemeCss
-} from "./chunks/chunk-DO62DG26.js";
+} from "./chunks/chunk-TABI4JEU.js";
 import {
   rangeText,
   walkKey,
@@ -243,11 +246,11 @@ import "./chunks/chunk-WA5WNP6V.js";
 import {
   walkRowLabels,
   walkRowsExtent
-} from "./chunks/chunk-OLKXMZ6J.js";
+} from "./chunks/chunk-YHJ5JLBI.js";
 import {
   filterSamples,
   walkRows
-} from "./chunks/chunk-CIDSF47D.js";
+} from "./chunks/chunk-DEDD7TFJ.js";
 import {
   pathColorsLegible,
   pathLegend,
@@ -416,6 +419,7 @@ export {
   assemblyWalk,
   axisScaleOf,
   backboneAssembly,
+  backboneGenes,
   bubbleHalos,
   bubbleSegmentIds,
   bubbleSubgraph,

package/dist/layout/tubeMapLayout.js

@@ -5,10 +5,10 @@ import {
   tubeMapLayout,
   tubeMapReferenceLayout,
   tubeMapTracks
-} from "../chunks/chunk-PK5QQOMN.js";
+} from "../chunks/chunk-LMH5KVJZ.js";
 import "../chunks/chunk-A7H753BA.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-CIDSF47D.js";
+import "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-3GP3KT5L.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-EIY2SKD3.js";

package/dist/layout/walkRowLayout.js

@@ -4,8 +4,8 @@ import {
   walkRowLabels,
   walkRowLayout,
   walkRowsExtent
-} from "../chunks/chunk-OLKXMZ6J.js";
-import "../chunks/chunk-CIDSF47D.js";
+} from "../chunks/chunk-YHJ5JLBI.js";
+import "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";

package/dist/layout/walkRows.js

@@ -2,7 +2,7 @@ import {
   filterSamples,
   referenceWalkName,
   walkRows
-} from "../chunks/chunk-CIDSF47D.js";
+} from "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";

package/dist/layout/walkStrip.js

@@ -9,7 +9,7 @@ import {
   walkStripApplies,
   walkStripFrame,
   walkStripLabelsTree
-} from "../chunks/chunk-TEF3NBG3.js";
+} from "../chunks/chunk-IZ6Y5D23.js";
 import {
   LABELLED_ROW_PX
 } from "../chunks/chunk-XZ6PQBU6.js";
@@ -18,8 +18,8 @@ import "../chunks/chunk-SWCULW6S.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-GQZVR5DW.js";
 import "../chunks/chunk-WA5WNP6V.js";
-import "../chunks/chunk-OLKXMZ6J.js";
-import "../chunks/chunk-CIDSF47D.js";
+import "../chunks/chunk-YHJ5JLBI.js";
+import "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-3GP3KT5L.js";
 import "../chunks/chunk-CRCD3ODN.js";
 import "../chunks/chunk-B5X2RLJG.js";

package/dist/layoutModes.js

@@ -4,8 +4,8 @@ import {
   LAYOUT_MODE_VALUES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-EDWU7OM4.js";
-import "./chunks/chunk-PK5QQOMN.js";
+} from "./chunks/chunk-NGUM77EP.js";
+import "./chunks/chunk-LMH5KVJZ.js";
 import "./chunks/chunk-A7H753BA.js";
 import "./chunks/chunk-GJU6BJJA.js";
 import "./chunks/chunk-GJLZ2MKE.js";
@@ -13,8 +13,8 @@ import "./chunks/chunk-MYLAJDKB.js";
 import "./chunks/chunk-C44YRP5F.js";
 import "./chunks/chunk-UAFATXYA.js";
 import "./chunks/chunk-3GLG3ZLE.js";
-import "./chunks/chunk-OLKXMZ6J.js";
-import "./chunks/chunk-CIDSF47D.js";
+import "./chunks/chunk-YHJ5JLBI.js";
+import "./chunks/chunk-DEDD7TFJ.js";
 import "./chunks/chunk-3GP3KT5L.js";
 import "./chunks/chunk-B5X2RLJG.js";
 import "./chunks/chunk-VX656OAZ.js";

package/dist/tubeMap/bundle.js

@@ -1,10 +1,10 @@
 import {
   bundleRoutes
-} from "../chunks/chunk-BIOKXS3M.js";
-import "../chunks/chunk-PK5QQOMN.js";
+} from "../chunks/chunk-RETNT73O.js";
+import "../chunks/chunk-LMH5KVJZ.js";
 import "../chunks/chunk-A7H753BA.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-CIDSF47D.js";
+import "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-3GP3KT5L.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-EIY2SKD3.js";

package/dist/tubeMap/coarsen.js

@@ -1,11 +1,11 @@
 import {
   coarsenTubeMap,
   lastAtMost
-} from "../chunks/chunk-EY2ZGSCP.js";
-import "../chunks/chunk-PK5QQOMN.js";
+} from "../chunks/chunk-V5MAL7LU.js";
+import "../chunks/chunk-LMH5KVJZ.js";
 import "../chunks/chunk-A7H753BA.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-CIDSF47D.js";
+import "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-3GP3KT5L.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-EIY2SKD3.js";

package/dist/tubeMap/deviations.js

@@ -1,14 +1,14 @@
 import {
   lastAtMost
-} from "../chunks/chunk-EY2ZGSCP.js";
+} from "../chunks/chunk-V5MAL7LU.js";
 import {
   boxX,
   referenceBoxes
 } from "../chunks/chunk-HSVFCA2J.js";
-import "../chunks/chunk-PK5QQOMN.js";
+import "../chunks/chunk-LMH5KVJZ.js";
 import "../chunks/chunk-A7H753BA.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-CIDSF47D.js";
+import "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-3GP3KT5L.js";
 import {
   pathOrigin

package/dist/tubeMap/draw.js

@@ -8,12 +8,12 @@ import {
   tubeMapMismatchAt,
   tubeMapPicture,
   tubeMapTrackAt
-} from "../chunks/chunk-L5IETLWP.js";
+} from "../chunks/chunk-ZUL52ZX2.js";
 import "../chunks/chunk-MYDHU2UV.js";
 import "../chunks/chunk-BX4AUMZE.js";
 import "../chunks/chunk-A7H753BA.js";
 import "../chunks/chunk-C44YRP5F.js";
-import "../chunks/chunk-CIDSF47D.js";
+import "../chunks/chunk-DEDD7TFJ.js";
 import "../chunks/chunk-B5X2RLJG.js";
 import "../chunks/chunk-EIY2SKD3.js";
 import "../chunks/chunk-ZPZ7GNBT.js";

package/dist/types/figureData.d.ts

@@ -4,7 +4,7 @@ import type { LayoutEngineKind } from './layoutEngines.js';
 import type { LayoutModeValue } from './layoutModes.js';
 import type { Graph, LayoutResult } from './types.js';
 import type { WalkLayer } from './walkEncoding.js';
-export type FigureDataOptions = Pick<FigureOptions, 'width' | 'height' | 'walks' | 'facet' | 'colorScheme' | 'nodeWidth' | 'showDeletionEdges' | 'linearLayout' | 'contigThickness' | 'connectorThickness' | 'region' | 'referenceName' | 'colorDomain' | 'fitToDrawing'>;
+export type FigureDataOptions = Pick<FigureOptions, 'width' | 'height' | 'walks' | 'facet' | 'colorScheme' | 'nodeWidth' | 'showDeletionEdges' | 'linearLayout' | 'contigThickness' | 'connectorThickness' | 'region' | 'referenceName' | 'colorDomain' | 'fitToDrawing' | 'genes'>;
 type Columns<T> = {
     [K in keyof T]: T[K][];
 };
@@ -35,6 +35,27 @@ interface EdgeRow {
     width: number;
     deletion: boolean;
 }
+interface KeyRow {
+    panel: string;
+    walk: string;
+    note: string;
+    scale: string;
+    stops: string;
+}
+interface PinRow {
+    gene: string;
+    x: number;
+    y: number;
+    covered: number;
+    bp: number;
+}
+interface ExonRow {
+    gene: string;
+    node: string;
+    stretch: number;
+    x: number;
+    y: number;
+}
 interface ArrowRow {
     panel: string;
     edge: number;
@@ -62,6 +83,10 @@ export declare function figureData(graph: Graph, layout: LayoutResult, o?: Figur
         key: string[];
         range: string[];
     };
+    keys: Columns<KeyRow>;
+    pins: Columns<PinRow>;
+    exons: Columns<ExonRow>;
+    walkNames: string[];
     nodes: Columns<NodeRow>;
     edges: Columns<EdgeRow>;
     arrows: Columns<ArrowRow>;
@@ -77,7 +102,7 @@ export declare function figureData(graph: Graph, layout: LayoutResult, o?: Figur
         y: number[];
     };
 };
-export interface GfaFigureSpec extends Omit<FigureDataOptions, 'region' | 'walks'> {
+export interface GfaFigureSpec extends Omit<FigureDataOptions, 'region' | 'walks' | 'genes'> {
     region?: string;
     walks?: (string | WalkLayer)[];
     layout?: LayoutModeValue;
@@ -109,6 +134,10 @@ export declare function gfaFigureData(text: string, name: string, spec?: GfaFigu
         key: string[];
         range: string[];
     };
+    keys: Columns<KeyRow>;
+    pins: Columns<PinRow>;
+    exons: Columns<ExonRow>;
+    walkNames: string[];
     nodes: Columns<NodeRow>;
     edges: Columns<EdgeRow>;
     arrows: Columns<ArrowRow>;

package/dist/types/genes/backboneGenes.d.ts

@@ -0,0 +1,25 @@
+import type { GeneFormat } from './geneFiles.js';
+import type { GeneModel } from './genePins.js';
+import type { Graph } from '../types.js';
+export interface IndexedGeneFile {
+    getReferenceSequenceNames(): Promise<string[]>;
+    getLines(refName: string, start: number, end: number, o: {
+        lineCallback: (line: string) => void;
+    }): Promise<unknown>;
+}
+export type GeneSource = ({
+    text: string;
+} | {
+    indexed: IndexedGeneFile;
+}) & {
+    format?: GeneFormat;
+    refNames?: Record<string, string>;
+};
+export interface BackboneGenes {
+    genes: GeneModel[];
+    unbound?: {
+        names: string[];
+        contigs: string[];
+    };
+}
+export declare function backboneGenes(graph: Graph, source: GeneSource): Promise<BackboneGenes>;

package/dist/types/genes/genePins.d.ts

@@ -16,6 +16,7 @@ export interface GenePin {
     exonsByNode: {
         nodeId: string;
         d: string;
+        stretches: NodeSegment[][];
     }[];
     nodeIds: ReadonlySet<string>;
     at: NodeSegment;

package/dist/types/index.d.ts

@@ -53,6 +53,8 @@ export { figureSvg } from './figure.js';
 export { figureData, gfaFigureData } from './figureData.js';
 export type { FigureDataOptions, GfaFigureSpec } from './figureData.js';
 export { genesFromBed, genesFromGff3Lines, genesFromText, mergeOverlappingByName, } from './genes/geneFiles.js';
+export { backboneGenes } from './genes/backboneGenes.js';
+export type { BackboneGenes, GeneSource, IndexedGeneFile, } from './genes/backboneGenes.js';
 export { HPRC_GBZ, cutGbzRegion, openGbz, parseRegion } from './gbzCut.js';
 export type { GbzSource } from './gbzCut.js';
 export { version } from './version.js';
@@ -72,7 +74,7 @@ export { BUBBLE_KIND_COLORS, BUBBLE_KIND_NAMES, bubbleSegmentIds, classifyBubble
 export { bubbleSubgraph } from './bubbles/popBubble.js';
 export type { MinigraphBubble } from './bubbles/bubbleLine.js';
 export { filterSamples, walkRows } from './layout/walkRows.js';
-export type { WalkAxis, WalkRow, WalkRows, WalkRun, WalkStop, } from './layout/walkRows.js';
+export type { WalkAxis, WalkRow, WalkRows, WalkRun, WalkStop, WalkVisit, } from './layout/walkRows.js';
 export { BAR_PX as WALK_BAR_PX, CALL_TICK as WALK_CALL_TICK, DISAGREES as WALK_DISAGREES, GAP_PX as WALK_GAP_PX, GENE_INK as WALK_GENE_INK, OFF_REFERENCE as WALK_OFF_REFERENCE, ON_REFERENCE as WALK_ON_REFERENCE, OUTSIDE_CUT as WALK_OUTSIDE_CUT, UNBACKED_TICK as WALK_UNBACKED_TICK, alongRow, callTickInk, coalesceRuns, gapStyle, genesOnRow, placeRowGenes, readoutPlacement, rowGeneBoxes, rowPitch, rowSpan, runPaint, unitTicks, walkRowReadout, walkRowsKey, walkRowsKeyTree, walkRowsTree, } from './layout/walkRowDraw.js';
 export type { GeneBox, GeneGaps, KeyEntry, KeySwatch, ReadoutCall, RowGene, RowPitch, WalkRowsFrame, WalkRowsWithCalls, } from './layout/walkRowDraw.js';
 export { LABELLED_ROW_PX, WALK_STRIP_CEILING_PX, segmentAt, stripGeneGaps, stripMarks, stripRowAt, walkMarksTree, walkStripFrame, walkStripLabelsTree, } from './layout/walkStrip.js';

package/dist/types/layout/walkRows.d.ts

@@ -19,6 +19,11 @@ export interface WalkStop {
     contigEnds: boolean;
     shortBp: number;
 }
+export interface WalkVisit {
+    node: string;
+    start: number;
+    onReference: boolean;
+}
 export interface WalkRow {
     name: string;
     label: string;
@@ -30,6 +35,7 @@ export interface WalkRow {
     complete: boolean;
     stop?: WalkStop;
     runs: WalkRun[];
+    visits: WalkVisit[];
     axis?: WalkAxis;
 }
 export interface WalkRows {

package/dist/types/version.d.ts

@@ -1 +1 @@
-export declare const version = "11.0.0";
+export declare const version = "11.1.0";

package/dist/types/walkEncoding.d.ts

@@ -51,5 +51,6 @@ export declare const NO_VALUE_COLOR: number;
 export declare function encodingStops({ field, scheme }: WalkEncoding): {
     offset: number;
     color: string;
+    abgr: number;
 }[];
 export declare function encodingSwatchCss(encoding: WalkEncoding): string;

package/dist/version.js

@@ -1,6 +1,6 @@
 import {
   version
-} from "./chunks/chunk-6OP4HPXG.js";
+} from "./chunks/chunk-Y3FDMDNT.js";
 export {
   version
 };

package/dist/walkEncoding.js

@@ -9,7 +9,7 @@ import {
   schemeColor,
   schemeCss,
   schemeRgb
-} from "./chunks/chunk-DO62DG26.js";
+} from "./chunks/chunk-TABI4JEU.js";
 import "./chunks/chunk-SWCULW6S.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-GQZVR5DW.js";

package/dist/walkHighlight.js

@@ -2,8 +2,8 @@ import {
   facetLifts,
   walkHighlight,
   walkLift
-} from "./chunks/chunk-C3NT37C3.js";
-import "./chunks/chunk-DO62DG26.js";
+} from "./chunks/chunk-DR24UTRS.js";
+import "./chunks/chunk-TABI4JEU.js";
 import "./chunks/chunk-SWCULW6S.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-GQZVR5DW.js";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/bandage-core",
-  "version": "11.0.0",
+  "version": "11.1.0",
   "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
   "license": "GPL-3.0-or-later",
   "repository": {