@jbrowse/bandage-core 10.2.5 → 10.2.7

package/dist/chunks/{chunk-D5D36ZF6.js → chunk-23YFB5BB.js}

@@ -11,17 +11,17 @@ import {
 } from "./chunk-A4PFFC4Q.js";
 import {
   walkRowsExtent
-} from "./chunk-54POIBVC.js";
+} from "./chunk-L2HDM2R3.js";
 import {
   pathLegend,
   walkLabelsOf
 } from "./chunk-3XSM4OZU.js";
 import {
   FIGURE_DEFAULTS
-} from "./chunk-HNCXR2VS.js";
+} from "./chunk-AUFAPUO4.js";
 import {
   drawingBounds
-} from "./chunk-2QLLQJ72.js";
+} from "./chunk-QXUEF3AJ.js";
 import {
   referenceLabel
 } from "./chunk-RAKOB6IV.js";

package/dist/chunks/{chunk-BS4UZ44I.js → chunk-A7CFWFQS.js}

@@ -1,6 +1,6 @@
 import {
   clampZoom
-} from "./chunk-2QLLQJ72.js";
+} from "./chunk-QXUEF3AJ.js";
 
 // src/viewport.ts
 function axisScaleOf(scale, pixelRows) {

package/dist/chunks/{chunk-HNCXR2VS.js → chunk-AUFAPUO4.js}

@@ -1,6 +1,6 @@
 import {
   ENGINE_DEFAULTS
-} from "./chunk-2QLLQJ72.js";
+} from "./chunk-QXUEF3AJ.js";
 
 // src/figureSettings.ts
 var FIGURE_DEFAULTS = {

package/dist/chunks/{chunk-P3A6PAJV.js → chunk-CG35S2S2.js}

@@ -1,5 +1,5 @@
 // src/version.ts
-var version = "10.2.5";
+var version = "10.2.7";
 
 export {
   version

package/dist/chunks/{chunk-WZNPX7Q6.js → chunk-EQ2NIFRH.js}

@@ -1,7 +1,7 @@
 import {
   engineKey,
   forceLayout
-} from "./chunk-2QLLQJ72.js";
+} from "./chunk-QXUEF3AJ.js";
 
 // src/layout/forceCache.ts
 var DEFAULT_SIZE = 4;

package/dist/chunks/{chunk-54POIBVC.js → chunk-L2HDM2R3.js}

@@ -1,6 +1,6 @@
 import {
   walkRows
-} from "./chunk-RIPAA7OK.js";
+} from "./chunk-LKW2TP4N.js";
 import {
   ROW_HEIGHT_PX
 } from "./chunk-CPMHA4W5.js";

package/dist/chunks/{chunk-RIPAA7OK.js → chunk-LKW2TP4N.js}

@@ -152,8 +152,13 @@ function filterSamples(rows, samples) {
 }
 function walkRows(graph, region, unit) {
   const paths = graph.paths ?? [];
-  const isReference = (p) => pathOrigin(p.name).name === graph.referencePath;
-  const referencePieces = paths.some(isReference) ? paths.filter(isReference).sort((a, b) => (a.start ?? 0) - (b.start ?? 0)) : paths.slice(0, 1);
+  const nameOf = (p) => pathOrigin(p.name).name;
+  const rankZero = new Set(
+    graph.nodes.flatMap((n) => n.stable?.rank === 0 ? [n.stable.refName] : [])
+  );
+  const names = paths.map(nameOf);
+  const referenceName = graph.referencePath !== void 0 && names.includes(graph.referencePath) ? graph.referencePath : names.find((n) => rankZero.has(n)) ?? names[0];
+  const referencePieces = paths.filter((p) => nameOf(p) === referenceName).sort((a, b) => (a.start ?? 0) - (b.start ?? 0));
   const first = referencePieces[0];
   const others = paths.filter((p) => !referencePieces.includes(p));
   if (!first || others.length === 0) {

package/dist/chunks/{chunk-PSMKPSO4.js → chunk-OIV2GBAJ.js}

@@ -8,7 +8,7 @@ import {
 // src/gfa/graphTables.ts
 function walkFields(panSN) {
   const [sample = "", haplotype = "", ...contig] = panSN.split("#");
-  return { sample, haplotype, contig: contig.join("#") };
+  return contig.length > 0 ? { sample, haplotype: +haplotype, contig: contig.join("#") } : void 0;
 }
 function namesByList(lists, names, listCount, pathNames) {
   const starts = new Int32Array(listCount + 1);
@@ -161,8 +161,8 @@ function graphFromTables({ nodes: n, links: l, walks: w }, name = "Imported GFA"
   const blocks = [0];
   const pathSamples = [];
   for (const p of drawnWalks) {
-    const { sample, haplotype, contig } = walkFields(w.names[p]);
-    const pathName = `${sample}#${+haplotype}#${contig}`;
+    const fields = walkFields(w.names[p]);
+    const pathName = fields ? `${fields.sample}#${fields.haplotype}#${fields.contig}` : w.names[p];
     let named = nameIndex.get(pathName);
     if (named === void 0) {
       named = pathNames.length;
@@ -199,14 +199,7 @@ function graphFromTables({ nodes: n, links: l, walks: w }, name = "Imported GFA"
       }
       prev = node;
     }
-    paths.push({
-      name: pathName,
-      nodeIds,
-      start,
-      sample,
-      haplotype: +haplotype,
-      contig
-    });
+    paths.push({ name: pathName, nodeIds, start, ...fields });
     anchorPaths.push({
       name: pathName,
       sample: visitSample,
@@ -260,13 +253,16 @@ function graphTablesGFA({ nodes, links, walks }) {
     );
   }
   for (let p = 0; p < walks.names.length; p++) {
-    const { sample, haplotype, contig } = walkFields(walks.names[p]);
-    let body = "";
+    const name = walks.names[p];
+    const fields = walkFields(name);
+    const start = walks.starts[p];
+    const end = walks.ends[p];
+    const steps = [];
     for (let s = walks.offsets[p]; s < walks.offsets[p + 1]; s++) {
-      body += (walks.reversed[s] ? "<" : ">") + names[walks.steps[s]];
+      steps.push([names[walks.steps[s]], walks.reversed[s]]);
     }
     lines.push(
-      `W	${sample}	${haplotype}	${contig}	${walks.starts[p]}	${walks.ends[p]}	${body}`
+      fields ? `W	${fields.sample}	${fields.haplotype}	${fields.contig}	${start}	${end}	${steps.map(([id, rev]) => (rev ? "<" : ">") + id).join("")}` : `P	${start === 0 ? name : `${name}:${start}-${end}`}	${steps.map(([id, rev]) => id + (rev ? "-" : "+")).join(",")}	*`
     );
   }
   return lines.join("\n");

package/dist/chunks/{chunk-YTLRYUYM.js → chunk-QBHPHLAQ.js}

@@ -5,7 +5,7 @@ import {
   stripGeneGaps,
   walkStripFrame,
   walkStripLabelsTree
-} from "./chunk-BAETMD3J.js";
+} from "./chunk-WBSWROE6.js";
 import {
   walkRowsKey,
   walkRowsKeyTree,
@@ -34,30 +34,30 @@ import {
 } from "./chunk-H2H4Y3TV.js";
 import {
   version
-} from "./chunk-P3A6PAJV.js";
+} from "./chunk-CG35S2S2.js";
 import {
   axisScaleOf
-} from "./chunk-BS4UZ44I.js";
+} from "./chunk-A7CFWFQS.js";
 import {
   rangeText,
   walkKey
 } from "./chunk-4ETPXDO6.js";
 import {
   figureScene
-} from "./chunk-D5D36ZF6.js";
+} from "./chunk-23YFB5BB.js";
 import {
   encodingStops
 } from "./chunk-VQC7KELB.js";
 import {
   walkRowLabels
-} from "./chunk-54POIBVC.js";
+} from "./chunk-L2HDM2R3.js";
 import {
   nodeInk
 } from "./chunk-JBCZIBFC.js";
 import {
   FIT_PADDING,
   fitTransform
-} from "./chunk-2QLLQJ72.js";
+} from "./chunk-QXUEF3AJ.js";
 import {
   LABEL_CHAR_PX,
   LABEL_PAD,

package/dist/chunks/{chunk-2QLLQJ72.js → chunk-QXUEF3AJ.js}

@@ -20,7 +20,7 @@ import {
 } from "./chunk-5I3K4R2G.js";
 import {
   graphFromTables
-} from "./chunk-PSMKPSO4.js";
+} from "./chunk-OIV2GBAJ.js";
 import {
   anchorGraph
 } from "./chunk-M6LK4GII.js";

package/dist/chunks/{chunk-Y7AQYMDH.js → chunk-TKIJ5535.js}

@@ -15,7 +15,7 @@ import {
 } from "./chunk-CM6LO6OC.js";
 import {
   walkRowLayout
-} from "./chunk-54POIBVC.js";
+} from "./chunk-L2HDM2R3.js";
 import {
   isBackbone,
   isOffReference

package/dist/chunks/{chunk-HWSBIYY7.js → chunk-VV6KGJ7M.js}

@@ -3,22 +3,22 @@ import {
 } from "./chunk-JMABOQWL.js";
 import {
   layoutModeByValue
-} from "./chunk-Y7AQYMDH.js";
+} from "./chunk-TKIJ5535.js";
 import {
   parseRegion
 } from "./chunk-VQWHMWLF.js";
 import {
   version
-} from "./chunk-P3A6PAJV.js";
+} from "./chunk-CG35S2S2.js";
 import {
   axisScaleOf
-} from "./chunk-BS4UZ44I.js";
+} from "./chunk-A7CFWFQS.js";
 import {
   walkKey
 } from "./chunk-4ETPXDO6.js";
 import {
   figureScene
-} from "./chunk-D5D36ZF6.js";
+} from "./chunk-23YFB5BB.js";
 import {
   abgrAlpha,
   abgrBlue,
@@ -30,7 +30,7 @@ import {
   fitTransform,
   forceLayout,
   loadGraph
-} from "./chunk-2QLLQJ72.js";
+} from "./chunk-QXUEF3AJ.js";
 import {
   isBackbone
 } from "./chunk-FYQWPEEY.js";

package/dist/chunks/{chunk-BAETMD3J.js → chunk-WBSWROE6.js}

@@ -8,7 +8,7 @@ import {
 } from "./chunk-H2H4Y3TV.js";
 import {
   READOUT_ROOM
-} from "./chunk-54POIBVC.js";
+} from "./chunk-L2HDM2R3.js";
 import {
   pathOrigin
 } from "./chunk-M6LK4GII.js";

package/dist/cli/figure.js

@@ -7,9 +7,9 @@ import {
 } from "../chunks/chunk-G6UIYQZR.js";
 import {
   figureSvg
-} from "../chunks/chunk-YTLRYUYM.js";
+} from "../chunks/chunk-QBHPHLAQ.js";
 import "../chunks/chunk-RUCH6ZFL.js";
-import "../chunks/chunk-BAETMD3J.js";
+import "../chunks/chunk-WBSWROE6.js";
 import {
   genesOnRow,
   placeRowGenes
@@ -26,14 +26,14 @@ import "../chunks/chunk-H2H4Y3TV.js";
 import {
   laidOutGraph,
   walkLayers
-} from "../chunks/chunk-HWSBIYY7.js";
+} from "../chunks/chunk-VV6KGJ7M.js";
 import {
   LAYOUT_ENGINE_VALUES,
   isLayoutEngineKind
 } from "../chunks/chunk-JMABOQWL.js";
 import {
   LAYOUT_MODES
-} from "../chunks/chunk-Y7AQYMDH.js";
+} from "../chunks/chunk-TKIJ5535.js";
 import "../chunks/chunk-LOEA5IHZ.js";
 import "../chunks/chunk-XI3ZUTWF.js";
 import "../chunks/chunk-CWFNEKST.js";
@@ -51,25 +51,25 @@ import {
 } from "../chunks/chunk-VQWHMWLF.js";
 import "../chunks/chunk-Q7LYHGGQ.js";
 import "../chunks/chunk-WSIFAZU7.js";
-import "../chunks/chunk-P3A6PAJV.js";
-import "../chunks/chunk-BS4UZ44I.js";
+import "../chunks/chunk-CG35S2S2.js";
+import "../chunks/chunk-A7CFWFQS.js";
 import "../chunks/chunk-4ETPXDO6.js";
-import "../chunks/chunk-D5D36ZF6.js";
+import "../chunks/chunk-23YFB5BB.js";
 import "../chunks/chunk-LOCJN3BZ.js";
 import "../chunks/chunk-CU6P5RUG.js";
 import "../chunks/chunk-VQC7KELB.js";
 import "../chunks/chunk-A4PFFC4Q.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-ZY2AFL4Y.js";
-import "../chunks/chunk-54POIBVC.js";
+import "../chunks/chunk-L2HDM2R3.js";
 import {
   filterSamples,
   walkRows
-} from "../chunks/chunk-RIPAA7OK.js";
+} from "../chunks/chunk-LKW2TP4N.js";
 import "../chunks/chunk-3XSM4OZU.js";
 import "../chunks/chunk-JBCZIBFC.js";
-import "../chunks/chunk-HNCXR2VS.js";
-import "../chunks/chunk-2QLLQJ72.js";
+import "../chunks/chunk-AUFAPUO4.js";
+import "../chunks/chunk-QXUEF3AJ.js";
 import "../chunks/chunk-PUG7LXDF.js";
 import "../chunks/chunk-IGVV37VI.js";
 import "../chunks/chunk-OPPVSPEF.js";
@@ -77,7 +77,7 @@ import "../chunks/chunk-VPE4AYP7.js";
 import "../chunks/chunk-AR4BUBMU.js";
 import "../chunks/chunk-QYBZZI5H.js";
 import "../chunks/chunk-5I3K4R2G.js";
-import "../chunks/chunk-PSMKPSO4.js";
+import "../chunks/chunk-OIV2GBAJ.js";
 import "../chunks/chunk-M6LK4GII.js";
 import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-ES2N6V56.js";

package/dist/cli/fold.js

@@ -10,7 +10,7 @@ import {
 } from "../chunks/chunk-DY3JCAMX.js";
 import {
   loadGraph
-} from "../chunks/chunk-2QLLQJ72.js";
+} from "../chunks/chunk-QXUEF3AJ.js";
 import "../chunks/chunk-PUG7LXDF.js";
 import "../chunks/chunk-IGVV37VI.js";
 import "../chunks/chunk-OPPVSPEF.js";
@@ -18,7 +18,7 @@ import "../chunks/chunk-VPE4AYP7.js";
 import "../chunks/chunk-AR4BUBMU.js";
 import "../chunks/chunk-QYBZZI5H.js";
 import "../chunks/chunk-5I3K4R2G.js";
-import "../chunks/chunk-PSMKPSO4.js";
+import "../chunks/chunk-OIV2GBAJ.js";
 import "../chunks/chunk-M6LK4GII.js";
 import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-ES2N6V56.js";

package/dist/figure.js

@@ -1,8 +1,8 @@
 import {
   figureSvg
-} from "./chunks/chunk-YTLRYUYM.js";
+} from "./chunks/chunk-QBHPHLAQ.js";
 import "./chunks/chunk-RUCH6ZFL.js";
-import "./chunks/chunk-BAETMD3J.js";
+import "./chunks/chunk-WBSWROE6.js";
 import "./chunks/chunk-EFQLEGWM.js";
 import "./chunks/chunk-QLWI2PZ3.js";
 import "./chunks/chunk-RBCE2OQH.js";
@@ -13,22 +13,22 @@ import "./chunks/chunk-KC7T5RWG.js";
 import "./chunks/chunk-4HWM3FNK.js";
 import "./chunks/chunk-KBEP7VYK.js";
 import "./chunks/chunk-H2H4Y3TV.js";
-import "./chunks/chunk-P3A6PAJV.js";
-import "./chunks/chunk-BS4UZ44I.js";
+import "./chunks/chunk-CG35S2S2.js";
+import "./chunks/chunk-A7CFWFQS.js";
 import "./chunks/chunk-4ETPXDO6.js";
-import "./chunks/chunk-D5D36ZF6.js";
+import "./chunks/chunk-23YFB5BB.js";
 import "./chunks/chunk-LOCJN3BZ.js";
 import "./chunks/chunk-CU6P5RUG.js";
 import "./chunks/chunk-VQC7KELB.js";
 import "./chunks/chunk-A4PFFC4Q.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-ZY2AFL4Y.js";
-import "./chunks/chunk-54POIBVC.js";
-import "./chunks/chunk-RIPAA7OK.js";
+import "./chunks/chunk-L2HDM2R3.js";
+import "./chunks/chunk-LKW2TP4N.js";
 import "./chunks/chunk-3XSM4OZU.js";
 import "./chunks/chunk-JBCZIBFC.js";
-import "./chunks/chunk-HNCXR2VS.js";
-import "./chunks/chunk-2QLLQJ72.js";
+import "./chunks/chunk-AUFAPUO4.js";
+import "./chunks/chunk-QXUEF3AJ.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-OPPVSPEF.js";
@@ -36,7 +36,7 @@ import "./chunks/chunk-VPE4AYP7.js";
 import "./chunks/chunk-AR4BUBMU.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-5I3K4R2G.js";
-import "./chunks/chunk-PSMKPSO4.js";
+import "./chunks/chunk-OIV2GBAJ.js";
 import "./chunks/chunk-M6LK4GII.js";
 import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";

package/dist/figureData.js

@@ -3,9 +3,9 @@ import {
   gfaFigureData,
   laidOutGraph,
   walkLayers
-} from "./chunks/chunk-HWSBIYY7.js";
+} from "./chunks/chunk-VV6KGJ7M.js";
 import "./chunks/chunk-JMABOQWL.js";
-import "./chunks/chunk-Y7AQYMDH.js";
+import "./chunks/chunk-TKIJ5535.js";
 import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-XI3ZUTWF.js";
 import "./chunks/chunk-CWFNEKST.js";
@@ -17,22 +17,22 @@ import "./chunks/chunk-RVS2QCOX.js";
 import "./chunks/chunk-VQWHMWLF.js";
 import "./chunks/chunk-Q7LYHGGQ.js";
 import "./chunks/chunk-WSIFAZU7.js";
-import "./chunks/chunk-P3A6PAJV.js";
-import "./chunks/chunk-BS4UZ44I.js";
+import "./chunks/chunk-CG35S2S2.js";
+import "./chunks/chunk-A7CFWFQS.js";
 import "./chunks/chunk-4ETPXDO6.js";
-import "./chunks/chunk-D5D36ZF6.js";
+import "./chunks/chunk-23YFB5BB.js";
 import "./chunks/chunk-LOCJN3BZ.js";
 import "./chunks/chunk-CU6P5RUG.js";
 import "./chunks/chunk-VQC7KELB.js";
 import "./chunks/chunk-A4PFFC4Q.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-ZY2AFL4Y.js";
-import "./chunks/chunk-54POIBVC.js";
-import "./chunks/chunk-RIPAA7OK.js";
+import "./chunks/chunk-L2HDM2R3.js";
+import "./chunks/chunk-LKW2TP4N.js";
 import "./chunks/chunk-3XSM4OZU.js";
 import "./chunks/chunk-JBCZIBFC.js";
-import "./chunks/chunk-HNCXR2VS.js";
-import "./chunks/chunk-2QLLQJ72.js";
+import "./chunks/chunk-AUFAPUO4.js";
+import "./chunks/chunk-QXUEF3AJ.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-OPPVSPEF.js";
@@ -40,7 +40,7 @@ import "./chunks/chunk-VPE4AYP7.js";
 import "./chunks/chunk-AR4BUBMU.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-5I3K4R2G.js";
-import "./chunks/chunk-PSMKPSO4.js";
+import "./chunks/chunk-OIV2GBAJ.js";
 import "./chunks/chunk-M6LK4GII.js";
 import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";

package/dist/figureScene.js

@@ -1,18 +1,18 @@
 import {
   figureScene
-} from "./chunks/chunk-D5D36ZF6.js";
+} from "./chunks/chunk-23YFB5BB.js";
 import "./chunks/chunk-LOCJN3BZ.js";
 import "./chunks/chunk-CU6P5RUG.js";
 import "./chunks/chunk-VQC7KELB.js";
 import "./chunks/chunk-A4PFFC4Q.js";
 import "./chunks/chunk-G2FD7S3C.js";
 import "./chunks/chunk-ZY2AFL4Y.js";
-import "./chunks/chunk-54POIBVC.js";
-import "./chunks/chunk-RIPAA7OK.js";
+import "./chunks/chunk-L2HDM2R3.js";
+import "./chunks/chunk-LKW2TP4N.js";
 import "./chunks/chunk-3XSM4OZU.js";
 import "./chunks/chunk-JBCZIBFC.js";
-import "./chunks/chunk-HNCXR2VS.js";
-import "./chunks/chunk-2QLLQJ72.js";
+import "./chunks/chunk-AUFAPUO4.js";
+import "./chunks/chunk-QXUEF3AJ.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-OPPVSPEF.js";
@@ -20,7 +20,7 @@ import "./chunks/chunk-VPE4AYP7.js";
 import "./chunks/chunk-AR4BUBMU.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-5I3K4R2G.js";
-import "./chunks/chunk-PSMKPSO4.js";
+import "./chunks/chunk-OIV2GBAJ.js";
 import "./chunks/chunk-M6LK4GII.js";
 import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";

package/dist/figureSettings.js

@@ -1,8 +1,8 @@
 import {
   FIGURE_DEFAULTS,
   figureSpecSettings
-} from "./chunks/chunk-HNCXR2VS.js";
-import "./chunks/chunk-2QLLQJ72.js";
+} from "./chunks/chunk-AUFAPUO4.js";
+import "./chunks/chunk-QXUEF3AJ.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-OPPVSPEF.js";
@@ -10,7 +10,7 @@ import "./chunks/chunk-VPE4AYP7.js";
 import "./chunks/chunk-AR4BUBMU.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-5I3K4R2G.js";
-import "./chunks/chunk-PSMKPSO4.js";
+import "./chunks/chunk-OIV2GBAJ.js";
 import "./chunks/chunk-M6LK4GII.js";
 import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";

package/dist/gfa/graphTables.js

@@ -1,7 +1,7 @@
 import {
   graphFromTables,
   graphTablesGFA
-} from "../chunks/chunk-PSMKPSO4.js";
+} from "../chunks/chunk-OIV2GBAJ.js";
 import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-BPLIXMH7.js";
 export {

package/dist/index.js

@@ -41,7 +41,7 @@ import {
 } from "./chunks/chunk-2ZT7ZF7A.js";
 import {
   createForceLayoutCache
-} from "./chunks/chunk-WZNPX7Q6.js";
+} from "./chunks/chunk-EQ2NIFRH.js";
 import {
   graphBubbles,
   superbubblesFromGraph
@@ -83,7 +83,7 @@ import {
 } from "./chunks/chunk-AZFVORTC.js";
 import {
   figureSvg
-} from "./chunks/chunk-YTLRYUYM.js";
+} from "./chunks/chunk-QBHPHLAQ.js";
 import {
   svgCanvas
 } from "./chunks/chunk-RUCH6ZFL.js";
@@ -98,7 +98,7 @@ import {
   walkStripApplies,
   walkStripFrame,
   walkStripLabelsTree
-} from "./chunks/chunk-BAETMD3J.js";
+} from "./chunks/chunk-WBSWROE6.js";
 import {
   BAR_PX,
   CALL_TICK,
@@ -164,7 +164,7 @@ import {
 import {
   figureData,
   gfaFigureData
-} from "./chunks/chunk-HWSBIYY7.js";
+} from "./chunks/chunk-VV6KGJ7M.js";
 import {
   LAYOUT_ENGINES,
   layoutEngine
@@ -174,7 +174,7 @@ import {
   LAYOUT_MODES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-Y7AQYMDH.js";
+} from "./chunks/chunk-TKIJ5535.js";
 import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-XI3ZUTWF.js";
 import "./chunks/chunk-CWFNEKST.js";
@@ -201,7 +201,7 @@ import {
 import "./chunks/chunk-WSIFAZU7.js";
 import {
   version
-} from "./chunks/chunk-P3A6PAJV.js";
+} from "./chunks/chunk-CG35S2S2.js";
 import {
   axisScaleOf,
   contains,
@@ -209,13 +209,13 @@ import {
   screenToLayout,
   viewportOf,
   zoomAbout
-} from "./chunks/chunk-BS4UZ44I.js";
+} from "./chunks/chunk-A7CFWFQS.js";
 import {
   rangeText,
   walkKey,
   walkPosition
 } from "./chunks/chunk-4ETPXDO6.js";
-import "./chunks/chunk-D5D36ZF6.js";
+import "./chunks/chunk-23YFB5BB.js";
 import {
   layoutGeometryInputs
 } from "./chunks/chunk-LOCJN3BZ.js";
@@ -242,11 +242,11 @@ import "./chunks/chunk-ZY2AFL4Y.js";
 import {
   walkRowLabels,
   walkRowsExtent
-} from "./chunks/chunk-54POIBVC.js";
+} from "./chunks/chunk-L2HDM2R3.js";
 import {
   filterSamples,
   walkRows
-} from "./chunks/chunk-RIPAA7OK.js";
+} from "./chunks/chunk-LKW2TP4N.js";
 import {
   pathColorsLegible,
   pathLegend,
@@ -262,7 +262,7 @@ import {
 import {
   FIGURE_DEFAULTS,
   figureSpecSettings
-} from "./chunks/chunk-HNCXR2VS.js";
+} from "./chunks/chunk-AUFAPUO4.js";
 import {
   ENGINE_DEFAULTS,
   FIT_PADDING,
@@ -275,7 +275,7 @@ import {
   forceLayout,
   layoutExtent,
   loadGraph
-} from "./chunks/chunk-2QLLQJ72.js";
+} from "./chunks/chunk-QXUEF3AJ.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-OPPVSPEF.js";
@@ -286,7 +286,7 @@ import "./chunks/chunk-5I3K4R2G.js";
 import {
   graphFromTables,
   graphTablesGFA
-} from "./chunks/chunk-PSMKPSO4.js";
+} from "./chunks/chunk-OIV2GBAJ.js";
 import "./chunks/chunk-M6LK4GII.js";
 import {
   PathVisits,

package/dist/layout/forceCache.js

@@ -1,7 +1,7 @@
 import {
   createForceLayoutCache
-} from "../chunks/chunk-WZNPX7Q6.js";
-import "../chunks/chunk-2QLLQJ72.js";
+} from "../chunks/chunk-EQ2NIFRH.js";
+import "../chunks/chunk-QXUEF3AJ.js";
 import "../chunks/chunk-PUG7LXDF.js";
 import "../chunks/chunk-IGVV37VI.js";
 import "../chunks/chunk-OPPVSPEF.js";
@@ -9,7 +9,7 @@ import "../chunks/chunk-VPE4AYP7.js";
 import "../chunks/chunk-AR4BUBMU.js";
 import "../chunks/chunk-QYBZZI5H.js";
 import "../chunks/chunk-5I3K4R2G.js";
-import "../chunks/chunk-PSMKPSO4.js";
+import "../chunks/chunk-OIV2GBAJ.js";
 import "../chunks/chunk-M6LK4GII.js";
 import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-ES2N6V56.js";

package/dist/layout/walkRowLayout.js

@@ -3,8 +3,8 @@ import {
   walkRowLabels,
   walkRowLayout,
   walkRowsExtent
-} from "../chunks/chunk-54POIBVC.js";
-import "../chunks/chunk-RIPAA7OK.js";
+} from "../chunks/chunk-L2HDM2R3.js";
+import "../chunks/chunk-LKW2TP4N.js";
 import "../chunks/chunk-M6LK4GII.js";
 import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-BPLIXMH7.js";

package/dist/layout/walkRows.js

@@ -1,7 +1,7 @@
 import {
   filterSamples,
   walkRows
-} from "../chunks/chunk-RIPAA7OK.js";
+} from "../chunks/chunk-LKW2TP4N.js";
 import "../chunks/chunk-M6LK4GII.js";
 import "../chunks/chunk-RAEABQNW.js";
 import "../chunks/chunk-BPLIXMH7.js";

package/dist/layout/walkStrip.js

@@ -9,7 +9,7 @@ import {
   walkStripApplies,
   walkStripFrame,
   walkStripLabelsTree
-} from "../chunks/chunk-BAETMD3J.js";
+} from "../chunks/chunk-WBSWROE6.js";
 import {
   LABELLED_ROW_PX
 } from "../chunks/chunk-EFQLEGWM.js";
@@ -18,8 +18,8 @@ import "../chunks/chunk-H2H4Y3TV.js";
 import "../chunks/chunk-A4PFFC4Q.js";
 import "../chunks/chunk-G2FD7S3C.js";
 import "../chunks/chunk-ZY2AFL4Y.js";
-import "../chunks/chunk-54POIBVC.js";
-import "../chunks/chunk-RIPAA7OK.js";
+import "../chunks/chunk-L2HDM2R3.js";
+import "../chunks/chunk-LKW2TP4N.js";
 import "../chunks/chunk-3XSM4OZU.js";
 import "../chunks/chunk-JBCZIBFC.js";
 import "../chunks/chunk-M6LK4GII.js";

package/dist/layoutModes.js

@@ -4,7 +4,7 @@ import {
   LAYOUT_MODE_VALUES,
   layoutModeByValue,
   modeUsesLayoutEngine
-} from "./chunks/chunk-Y7AQYMDH.js";
+} from "./chunks/chunk-TKIJ5535.js";
 import "./chunks/chunk-LOEA5IHZ.js";
 import "./chunks/chunk-XI3ZUTWF.js";
 import "./chunks/chunk-CWFNEKST.js";
@@ -13,8 +13,8 @@ import "./chunks/chunk-TZFWUT2C.js";
 import "./chunks/chunk-C44YRP5F.js";
 import "./chunks/chunk-CM6LO6OC.js";
 import "./chunks/chunk-RVS2QCOX.js";
-import "./chunks/chunk-54POIBVC.js";
-import "./chunks/chunk-RIPAA7OK.js";
+import "./chunks/chunk-L2HDM2R3.js";
+import "./chunks/chunk-LKW2TP4N.js";
 import "./chunks/chunk-3XSM4OZU.js";
 import "./chunks/chunk-M6LK4GII.js";
 import "./chunks/chunk-RAEABQNW.js";

package/dist/pipeline.js

@@ -11,7 +11,7 @@ import {
   forceLayout,
   layoutExtent,
   loadGraph
-} from "./chunks/chunk-2QLLQJ72.js";
+} from "./chunks/chunk-QXUEF3AJ.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-OPPVSPEF.js";
@@ -19,7 +19,7 @@ import "./chunks/chunk-VPE4AYP7.js";
 import "./chunks/chunk-AR4BUBMU.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-5I3K4R2G.js";
-import "./chunks/chunk-PSMKPSO4.js";
+import "./chunks/chunk-OIV2GBAJ.js";
 import "./chunks/chunk-M6LK4GII.js";
 import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";

package/dist/types/gfa/graphTables.d.ts

@@ -36,6 +36,8 @@ export interface GraphTables {
  */
 export declare function graphFromTables({ nodes: n, links: l, walks: w }: GraphTables, name?: string): Graph;
 /**
- * The tables as GFA text: S lines in table order, then L lines, then W lines
+ * The tables as GFA text: S lines in table order, then L lines, then a W
+ * line per walk, or a P line for a walk whose name has fewer than three PanSN
+ * parts
  */
 export declare function graphTablesGFA({ nodes, links, walks }: GraphTables): string;

package/dist/types/version.d.ts

@@ -1 +1 @@
-export declare const version = "10.2.5";
+export declare const version = "10.2.7";

package/dist/version.js

@@ -1,6 +1,6 @@
 import {
   version
-} from "./chunks/chunk-P3A6PAJV.js";
+} from "./chunks/chunk-CG35S2S2.js";
 export {
   version
 };

package/dist/viewport.js

@@ -5,8 +5,8 @@ import {
   screenToLayout,
   viewportOf,
   zoomAbout
-} from "./chunks/chunk-BS4UZ44I.js";
-import "./chunks/chunk-2QLLQJ72.js";
+} from "./chunks/chunk-A7CFWFQS.js";
+import "./chunks/chunk-QXUEF3AJ.js";
 import "./chunks/chunk-PUG7LXDF.js";
 import "./chunks/chunk-IGVV37VI.js";
 import "./chunks/chunk-OPPVSPEF.js";
@@ -14,7 +14,7 @@ import "./chunks/chunk-VPE4AYP7.js";
 import "./chunks/chunk-AR4BUBMU.js";
 import "./chunks/chunk-QYBZZI5H.js";
 import "./chunks/chunk-5I3K4R2G.js";
-import "./chunks/chunk-PSMKPSO4.js";
+import "./chunks/chunk-OIV2GBAJ.js";
 import "./chunks/chunk-M6LK4GII.js";
 import "./chunks/chunk-RAEABQNW.js";
 import "./chunks/chunk-ES2N6V56.js";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/bandage-core",
-  "version": "10.2.5",
+  "version": "10.2.7",
   "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
   "license": "GPL-3.0-or-later",
   "repository": {