@jbrowse/bandage-core 10.2.1 → 10.2.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +6 -7
- package/dist/bubbles/bubbleHalos.js +7 -3
- package/dist/bubbles/bubblesFromGraph.js +4 -2
- package/dist/bubbles/classifyBubble.js +10 -5
- package/dist/bubbles/superbubbles.js +10 -6
- package/dist/chunks/{chunk-N6FECAXP.js → chunk-24WITXQY.js} +17 -8
- package/dist/chunks/{chunk-XTCNEKO5.js → chunk-2QLLQJ72.js} +15 -13
- package/dist/chunks/{chunk-ETXKKEXV.js → chunk-3AOGOCCQ.js} +44 -103
- package/dist/chunks/{chunk-TWRLC3KK.js → chunk-3XSM4OZU.js} +1 -1
- package/dist/chunks/{chunk-WEDZ76AK.js → chunk-4DRQTBBE.js} +1 -1
- package/dist/chunks/{chunk-2LQ5BWT7.js → chunk-4ETPXDO6.js} +1 -1
- package/dist/chunks/{chunk-FP4H7SFT.js → chunk-4HWM3FNK.js} +2 -2
- package/dist/chunks/{chunk-C7MZJSPT.js → chunk-54POIBVC.js} +2 -8
- package/dist/chunks/{chunk-PKFMP65V.js → chunk-5GMFEPWR.js} +1 -1
- package/dist/chunks/{chunk-CDLPYR5O.js → chunk-5I3K4R2G.js} +7 -6
- package/dist/chunks/{chunk-AGK7VZKM.js → chunk-7CC7N3XC.js} +35 -78
- package/dist/chunks/{chunk-2CVHXFK7.js → chunk-7SRWJLSC.js} +19 -22
- package/dist/chunks/{chunk-SBMJNRTV.js → chunk-A4PFFC4Q.js} +37 -27
- package/dist/chunks/{chunk-IW6CYVX2.js → chunk-AR4BUBMU.js} +6 -1
- package/dist/chunks/{chunk-IUDJKOLB.js → chunk-B6IW3IRE.js} +15 -33
- package/dist/chunks/{chunk-RPDXZLCG.js → chunk-BAETMD3J.js} +9 -4
- package/dist/chunks/{chunk-L5WF4ZPS.js → chunk-BS4UZ44I.js} +1 -1
- package/dist/chunks/{chunk-HNQPEMYE.js → chunk-CM6LO6OC.js} +0 -1
- package/dist/chunks/{chunk-CLOP7UVD.js → chunk-CQHUZHET.js} +11 -8
- package/dist/chunks/{chunk-R456ME6J.js → chunk-CU6P5RUG.js} +17 -6
- package/dist/chunks/chunk-D5D36ZF6.js +107 -0
- package/dist/chunks/{chunk-AFP3NWSL.js → chunk-DY3JCAMX.js} +1 -1
- package/dist/chunks/{chunk-XYP6WL2N.js → chunk-EFQLEGWM.js} +4 -4
- package/dist/chunks/{chunk-BXEPA4KS.js → chunk-G6UIYQZR.js} +5 -2
- package/dist/chunks/{chunk-NNODIW4U.js → chunk-H2H4Y3TV.js} +1 -0
- package/dist/chunks/{chunk-MVFDSFV2.js → chunk-HNCXR2VS.js} +1 -1
- package/dist/chunks/{chunk-U2274YU6.js → chunk-J5FWKGOY.js} +1 -1
- package/dist/chunks/{chunk-PBENCR5L.js → chunk-JBCZIBFC.js} +0 -2
- package/dist/chunks/{chunk-EHUBJDDB.js → chunk-JFY5PWQC.js} +5 -3
- package/dist/chunks/{chunk-5BGP5Z64.js → chunk-JLSJMCDJ.js} +1 -1
- package/dist/chunks/{chunk-DT2GGH4D.js → chunk-JMABOQWL.js} +2 -6
- package/dist/chunks/{chunk-3S3YVOJ7.js → chunk-JSUCGZ6K.js} +1 -1
- package/dist/chunks/{chunk-MLSWIMZO.js → chunk-KBEP7VYK.js} +2 -2
- package/dist/chunks/{chunk-TAMCZHLW.js → chunk-N73TI3VG.js} +2 -2
- package/dist/chunks/chunk-O4EGE27I.js +10 -0
- package/dist/chunks/{chunk-3ZZSX5HN.js → chunk-PTABFYQ7.js} +10 -6
- package/dist/chunks/{chunk-WBCOREDZ.js → chunk-QLWI2PZ3.js} +16 -7
- package/dist/chunks/chunk-RBCE2OQH.js +32 -0
- package/dist/chunks/{chunk-BUBZ32IC.js → chunk-RPRHR56C.js} +4 -8
- package/dist/chunks/{chunk-47DYCZOK.js → chunk-RUCH6ZFL.js} +4 -0
- package/dist/chunks/{chunk-GNTTI6LA.js → chunk-T2PCSAFY.js} +1 -1
- package/dist/chunks/{chunk-XKWD2RY3.js → chunk-URZ3CH2R.js} +3 -10
- package/dist/chunks/{chunk-ALDGONEI.js → chunk-VQC7KELB.js} +1 -1
- package/dist/chunks/{chunk-FLFBYSJO.js → chunk-VQWHMWLF.js} +5 -1
- package/dist/chunks/{chunk-4R6QNG23.js → chunk-WL6ZKUVC.js} +3 -3
- package/dist/chunks/{chunk-CRTD2SBP.js → chunk-WZNPX7Q6.js} +6 -2
- package/dist/chunks/{chunk-FNGIQF43.js → chunk-XA5A27CS.js} +6 -14
- package/dist/chunks/{chunk-DK5P2YOL.js → chunk-XI3ZUTWF.js} +2 -2
- package/dist/chunks/{chunk-ZIUKZUPJ.js → chunk-XL472HHD.js} +1 -1
- package/dist/chunks/{chunk-BPRXQ2SS.js → chunk-XMW266WS.js} +1 -1
- package/dist/chunks/{chunk-DRG4236Y.js → chunk-YN6FDIBT.js} +2 -2
- package/dist/chunks/{chunk-WFB5TXRA.js → chunk-ZY2AFL4Y.js} +13 -31
- package/dist/cli/decodeText.js +6 -0
- package/dist/cli/figure.js +59 -60
- package/dist/cli/fold.js +13 -13
- package/dist/deletionEdges.js +6 -4
- package/dist/el.js +3 -1
- package/dist/figure.js +33 -31
- package/dist/figureData.js +32 -27
- package/dist/figureScene.js +43 -0
- package/dist/figureSettings.js +8 -8
- package/dist/foldVariants.js +2 -2
- package/dist/gbzCut.js +1 -1
- package/dist/genes/exonOutline.js +2 -2
- package/dist/genes/geneFiles.js +1 -1
- package/dist/genes/genePins.js +3 -3
- package/dist/gfa/gfaConverter.js +2 -2
- package/dist/gfa-core/gfaParser.js +1 -1
- package/dist/gfa-core/index.js +1 -1
- package/dist/graphLabels.js +4 -4
- package/dist/index.js +72 -73
- package/dist/labelLayout.js +8 -8
- package/dist/layout/forceCache.js +8 -8
- package/dist/layout/mergeRuns.js +2 -2
- package/dist/layout/orderedLayout.js +1 -3
- package/dist/layout/tubeMapLayout.js +6 -6
- package/dist/layout/walkRowDraw.js +11 -11
- package/dist/layout/walkRowLayout.js +3 -1
- package/dist/layout/walkStrip.js +14 -12
- package/dist/layoutEngines.js +1 -2
- package/dist/layoutModes.js +9 -9
- package/dist/nodeWidths.js +1 -3
- package/dist/pathColors.js +5 -5
- package/dist/pipeline.js +7 -7
- package/dist/referenceRampCss.js +9 -9
- package/dist/referenceStrip.js +9 -9
- package/dist/renderer/Canvas2DRenderer.js +2 -2
- package/dist/renderer/GeometryBuilder.js +8 -8
- package/dist/renderer/canvas.js +1 -1
- package/dist/renderer/svgCanvas.js +1 -1
- package/dist/tubeMap/axis.js +5 -5
- package/dist/tubeMap/bundle.js +7 -7
- package/dist/tubeMap/coarsen.js +6 -6
- package/dist/tubeMap/deviations.js +5 -5
- package/dist/tubeMap/draw.js +1 -1
- package/dist/tubeMap/genes.js +6 -6
- package/dist/tubeMap/nodeColors.js +9 -9
- package/dist/types/bubbles/bubblesFromGraph.d.ts +1 -0
- package/dist/types/bubbles/classifyBubble.d.ts +0 -1
- package/dist/types/cli/decodeText.d.ts +1 -0
- package/dist/types/cli/figure.d.ts +4 -15
- package/dist/types/deletionEdges.d.ts +3 -5
- package/dist/types/el.d.ts +1 -0
- package/dist/types/figureData.d.ts +7 -26
- package/dist/types/figureScene.d.ts +31 -0
- package/dist/types/genes/geneFiles.d.ts +2 -1
- package/dist/types/index.d.ts +1 -1
- package/dist/types/layout/deletionRoutes.d.ts +1 -1
- package/dist/types/layout/orderedLayout.d.ts +0 -6
- package/dist/types/layout/walkRowLayout.d.ts +1 -0
- package/dist/types/nodeWidths.d.ts +0 -1
- package/dist/types/renderer/Canvas2DRenderer.d.ts +1 -0
- package/dist/types/renderer/canvas.d.ts +2 -2
- package/dist/types/tubeMap/draw.d.ts +1 -0
- package/dist/types/util/geometry.d.ts +3 -3
- package/dist/types/version.d.ts +1 -1
- package/dist/util/SpatialIndex.js +4 -4
- package/dist/util/edgeCurves.js +3 -3
- package/dist/util/geometry.js +3 -3
- package/dist/util/hitDetection.js +5 -5
- package/dist/version.js +1 -1
- package/dist/viewport.js +8 -8
- package/dist/walkEncoding.js +9 -9
- package/dist/walkHighlight.js +10 -10
- package/dist/walkKey.js +5 -5
- package/package.json +4 -7
- package/dist/chunks/bandage-layout-3AR6BCUD.js +0 -4694
- package/dist/chunks/chunk-4BYTEJGW.js +0 -44
- package/dist/chunks/chunk-7XHHVYG7.js +0 -13
- package/dist/loadBandage.js +0 -6
- package/dist/types/bandage/bandage-layout.d.ts +0 -14
- package/dist/types/loadBandage.d.ts +0 -3
package/dist/foldVariants.js
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import {
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foldVariants
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export {
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package/dist/gbzCut.js
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package/dist/genes/geneFiles.js
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package/dist/genes/genePins.js
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export {
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package/dist/gfa/gfaConverter.js
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import "../chunks/chunk-BPLIXMH7.js";
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package/dist/gfa-core/index.js
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package/dist/graphLabels.js
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export {
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package/dist/index.js
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LABEL_PX
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|
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|
// src/index.ts
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351
|
import { stressLayout } from "@jbrowse/graph-stress-layout";
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|
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|
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|
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|
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|
|
@@ -471,7 +470,7 @@ export {
|
|
|
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470
|
layoutGeometryInputs,
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|
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471
|
layoutLabels,
|
|
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472
|
layoutModeByValue,
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|
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|
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loadBandage,
|
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|
+
loadFmmm as loadBandage,
|
|
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474
|
loadGraph,
|
|
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|
maxNodeWidthPx,
|
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|
meanDepth,
|
package/dist/labelLayout.js
CHANGED
|
@@ -4,15 +4,15 @@ import {
|
|
|
4
4
|
geneCoverageNote,
|
|
5
5
|
geneLabelCandidates,
|
|
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6
|
layoutLabels
|
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|
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|
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|
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|
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|
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|
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|
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import "./chunks/chunk-
|
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|
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} from "./chunks/chunk-YN6FDIBT.js";
|
|
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|
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import "./chunks/chunk-4HWM3FNK.js";
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|
9
|
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|
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|
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|
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|
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|
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|
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|
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|
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import "./chunks/chunk-
|
|
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|
+
import "./chunks/chunk-N73TI3VG.js";
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|
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|
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import "./chunks/chunk-24WITXQY.js";
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|
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import "./chunks/chunk-7SRWJLSC.js";
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|
import "./chunks/chunk-CPMHA4W5.js";
|
|
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17
|
import "./chunks/chunk-FYQWPEEY.js";
|
|
18
18
|
export {
|
|
@@ -1,25 +1,25 @@
|
|
|
1
1
|
import {
|
|
2
2
|
createForceLayoutCache
|
|
3
|
-
} from "../chunks/chunk-
|
|
4
|
-
import "../chunks/chunk-
|
|
3
|
+
} from "../chunks/chunk-WZNPX7Q6.js";
|
|
4
|
+
import "../chunks/chunk-2QLLQJ72.js";
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|
+
import "../chunks/chunk-PUG7LXDF.js";
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|
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|
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|
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|
-
import "../chunks/chunk-
|
|
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|
-
import "../chunks/chunk-IW6CYVX2.js";
|
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|
+
import "../chunks/chunk-AR4BUBMU.js";
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10
|
import "../chunks/chunk-QYBZZI5H.js";
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|
+
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|
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import "../chunks/chunk-CDLPYR5O.js";
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|
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|
+
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|
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|
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import "../chunks/chunk-
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|
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|
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|
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|
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25
|
export {
|
package/dist/layout/mergeRuns.js
CHANGED
|
@@ -3,8 +3,8 @@ import {
|
|
|
3
3
|
polylineMidpoint,
|
|
4
4
|
polylineSlice,
|
|
5
5
|
splitRuns
|
|
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|
-
} from "../chunks/chunk-
|
|
7
|
-
import "../chunks/chunk-
|
|
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|
+
} from "../chunks/chunk-N73TI3VG.js";
|
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|
+
import "../chunks/chunk-7SRWJLSC.js";
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8
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
9
9
|
import "../chunks/chunk-FYQWPEEY.js";
|
|
10
10
|
export {
|
|
@@ -1,12 +1,10 @@
|
|
|
1
1
|
import {
|
|
2
|
-
layerGraph,
|
|
3
2
|
orderedLayout,
|
|
4
3
|
referenceOrder
|
|
5
|
-
} from "../chunks/chunk-
|
|
4
|
+
} from "../chunks/chunk-CM6LO6OC.js";
|
|
6
5
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
7
6
|
import "../chunks/chunk-FYQWPEEY.js";
|
|
8
7
|
export {
|
|
9
|
-
layerGraph,
|
|
10
8
|
orderedLayout,
|
|
11
9
|
referenceOrder
|
|
12
10
|
};
|
|
@@ -8,18 +8,18 @@ import {
|
|
|
8
8
|
tubeMapReferenceLayout,
|
|
9
9
|
tubeMapTracks,
|
|
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10
|
tubeWidth
|
|
11
|
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} from "../chunks/chunk-
|
|
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|
+
} from "../chunks/chunk-XI3ZUTWF.js";
|
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12
|
import "../chunks/chunk-CWFNEKST.js";
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13
|
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|
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