@jbrowse/bandage-core 0.1.1 → 0.1.4

package/README.md

@@ -24,6 +24,6 @@ the worked example.
 Lives in the plugin repo as a pnpm workspace package. The plugin imports its
 source directly, so a change here needs no publish to reach the plugin.
 
-```
-pnpm release:core   # from the repo root: checks, bumps, tags core-v*, pushes
-```
+The core releases with the plugin: `pnpm version patch` at the repo root bumps
+both, and `publish.yml` and `publish-core.yml` each publish one from the `v*`
+tag.

package/dist/index.js

@@ -5063,6 +5063,7 @@ var HALO_FACTOR = 3.4;
 var LEGEND_INSET_PX = 6;
 var ROUTE_STACK = 8;
 var GENE_PIN_DROP_PX = 18;
+var GENE_STACK = 2;
 var GLYPH_ROOM_PX = 60;
 var MAX_GLYPH_LABEL_ROWS = 8;
 var TOPMOST_BASELINE = LABEL_PX + LABEL_PAD;
@@ -5151,7 +5152,8 @@ function layoutLabels(m) {
         item: pin,
         x,
         y: y + m.contigThickness + GENE_PIN_DROP_PX,
-        text: pin.covered < 0.98 ? `${pin.gene.name} \u2026` : pin.gene.name
+        text: pin.covered < 0.98 ? `${pin.gene.name} \u2026` : pin.gene.name,
+        stack: GENE_STACK
       };
     }),
     frame,

package/dist/types/alleleProjection/projectAlleles.d.ts

@@ -1,4 +1,4 @@
-import type { Graph } from '../types';
+import type { Graph } from '../types.js';
 export interface ProjectedAllele {
     start: number;
     refSpan: number;

package/dist/types/anchoredNodes.d.ts

@@ -1,5 +1,5 @@
-import type { StableCoordinate } from './gfa-core/index';
-import type { Graph, GraphNode, NodeSegment } from './types';
+import type { StableCoordinate } from './gfa-core/index.js';
+import type { Graph, GraphNode, NodeSegment } from './types.js';
 export type AnchoredNode = GraphNode & {
     stable: StableCoordinate;
 };

package/dist/types/bandage/bandage-layout.d.ts

@@ -1,5 +1,5 @@
-import type { LayoutNode } from '../layout/referenceSeeds'
-import type { Graph, LayoutResult } from '../types'
+import type { LayoutNode } from '../layout/referenceSeeds.js'
+import type { Graph, LayoutResult } from '../types.js'
 
 export interface BandageModule {
   computeLayout(

package/dist/types/bubbleSpreads.d.ts

@@ -1,21 +1,21 @@
-import type { NodeLengthSpread } from './layout/drawnScale';
+import type { NodeLengthSpread } from './layout/drawnScale.js';
 export declare const BUBBLE_SPREADS: readonly [{
     readonly value: "auto";
     readonly label: "Proportional";
     readonly description: "Bandage's own scale: a node draws proportional to its length, so a 1 bp allele is a speck.";
-    readonly law: import("./layout/drawnScale").DrawnLengthLaw;
+    readonly law: import("./layout/drawnScale.js").DrawnLengthLaw;
     readonly minNodeFactor: 0;
 }, {
     readonly value: "open";
     readonly label: "Open bubbles";
     readonly description: "Give every allele a drawn length, so a bubble reads as two arms rather than a knot.";
-    readonly law: import("./layout/drawnScale").DrawnLengthLaw;
+    readonly law: import("./layout/drawnScale.js").DrawnLengthLaw;
     readonly minNodeFactor: 2.5;
 }, {
     readonly value: "wide";
     readonly label: "Wide bubbles";
     readonly description: "As open, spread further. Best on a window of a dozen bubbles.";
-    readonly law: import("./layout/drawnScale").DrawnLengthLaw;
+    readonly law: import("./layout/drawnScale.js").DrawnLengthLaw;
     readonly minNodeFactor: 10;
 }, {
     readonly value: "compress";

package/dist/types/bubbles/bubbleHalos.d.ts

@@ -1,6 +1,6 @@
-import type { BubbleRoute, MinigraphBubble } from './bubbleLine';
-import type { BubbleKind, RepeatSpan } from './classifyBubble';
-import type { Graph, NodeSegment } from '../types';
+import type { BubbleRoute, MinigraphBubble } from './bubbleLine.js';
+import type { BubbleKind, RepeatSpan } from './classifyBubble.js';
+import type { Graph, NodeSegment } from '../types.js';
 export interface BubbleHalo {
     bubble: MinigraphBubble;
     kind: BubbleKind;

package/dist/types/bubbles/bubblesFromGraph.d.ts

@@ -1,3 +1,3 @@
-import type { MinigraphBubble } from './bubbleLine';
-import type { Graph } from '../types';
+import type { MinigraphBubble } from './bubbleLine.js';
+import type { Graph } from '../types.js';
 export declare function bubblesFromGraph(graph: Graph): MinigraphBubble[];

package/dist/types/bubbles/classifyBubble.d.ts

@@ -1,4 +1,4 @@
-import type { MinigraphBubble } from './bubbleLine';
+import type { MinigraphBubble } from './bubbleLine.js';
 export type BubbleKind = 'snp' | 'substitution' | 'insertion' | 'deletion' | 'inversion' | 'repeat' | 'superbubble' | 'complex';
 export interface BubbleClass {
     kind: BubbleKind;

package/dist/types/bubbles/popBubble.d.ts

@@ -1,2 +1,2 @@
-import type { Graph } from '../types';
+import type { Graph } from '../types.js';
 export declare function bubbleSubgraph(graph: Graph, segmentIds: string[]): Graph;

package/dist/types/colorSchemes.d.ts

@@ -1,4 +1,4 @@
-import type { Graph } from './types';
+import type { Graph } from './types.js';
 export declare const COLOR_SCHEMES: readonly [{
     readonly value: "auto";
     readonly label: "Auto";

package/dist/types/deletionEdges.d.ts

@@ -1,5 +1,5 @@
-import type { Graph } from './types';
-import type { AxisScale } from './util/geometry';
+import type { Graph } from './types.js';
+import type { AxisScale } from './util/geometry.js';
 export interface DeletionEdge {
     edgeIndex: number;
     from: string;
@@ -20,5 +20,5 @@ export declare function bypassedPoints(nodePositions: Record<string, {
 export declare function deletionArcCurves(nodePositions: Record<string, {
     x: number;
     y: number;
-}[]>, deletion: DeletionEdge, axis: AxisScale): import("./util/geometry").BezierCurve[] | undefined;
+}[]>, deletion: DeletionEdge, axis: AxisScale): import("./util/geometry.js").BezierCurve[] | undefined;
 export declare function deletionEdges(graph: Graph): DeletionEdge[];

package/dist/types/genes/genePins.d.ts

@@ -1,4 +1,4 @@
-import type { Graph, NodeSegment } from '../types';
+import type { Graph, NodeSegment } from '../types.js';
 export interface GeneModel {
     name: string;
     refName: string;

package/dist/types/gfa/gfaConverter.d.ts

@@ -1,11 +1,11 @@
-import type { GFAGraph } from '../gfa-core/index';
-import type { GraphEdge, GraphNode, GraphPath } from '../types';
+import type { GFAGraph } from '../gfa-core/index.js';
+import type { GraphEdge, GraphNode, GraphPath } from '../types.js';
 export declare function convertGFAToGraph(gfaGraph: GFAGraph, name?: string): {
     name: string;
     nodes: GraphNode[];
     edges: GraphEdge[];
     paths: GraphPath[] | undefined;
-    anchorPaths: import("../types").PathOrigin[] | undefined;
-    pathVisits: Map<string, import("../types").PathVisit[]> | undefined;
+    anchorPaths: import("../types.js").PathOrigin[] | undefined;
+    pathVisits: Map<string, import("../types.js").PathVisit[]> | undefined;
     anchoredBy: "tags" | undefined;
 };

package/dist/types/gfa-core/index.d.ts

@@ -1,2 +1,2 @@
-export { parseGFA, stableCoordinate } from './gfaParser';
-export type { GFAGraph, GFALink, GFANode, GFAPath, GFAWalk, GFAWalkSegment, StableCoordinate, } from './gfaParser';
+export { parseGFA, stableCoordinate } from './gfaParser.js';
+export type { GFAGraph, GFALink, GFANode, GFAPath, GFAWalk, GFAWalkSegment, StableCoordinate, } from './gfaParser.js';

package/dist/types/graphLabels.d.ts

@@ -1,7 +1,7 @@
-import type { DeletionEdge } from './deletionEdges';
-import type { Box, TakeBox } from './overlayLabels';
-import type { AlleleDeletion, NodeSegment } from './types';
-import type { AxisScale } from './util/geometry';
+import type { DeletionEdge } from './deletionEdges.js';
+import type { Box, TakeBox } from './overlayLabels.js';
+import type { AlleleDeletion, NodeSegment } from './types.js';
+import type { AxisScale } from './util/geometry.js';
 export declare function rowLabelBox(text: string, screenY: number): Box;
 export interface Leader {
     arcX: number;

package/dist/types/index.d.ts

@@ -1,50 +1,50 @@
-export { FIT_PADDING, clampZoom, drawingBounds, engineRequest, fitTransform, forceLayout, layoutExtent, loadGraph, } from './pipeline';
-export type { Bounds, EngineRequest, EngineSettings, LayoutEngine, } from './pipeline';
-export { FORCE_LAYOUT_LABEL, LAYOUT_MODES, layoutModeByValue, modeUsesLayoutEngine, } from './layoutModes';
-export type { LayoutModeValue } from './layoutModes';
-export { COLOR_SCHEMES, resolveColorScheme } from './colorSchemes';
-export type { ColorScheme, ResolvedColorScheme } from './colorSchemes';
-export { NODE_WIDTHS, maxNodeWidthPx, meanDepth, nodeInk, nodeWidthPx, } from './nodeWidths';
-export type { NodeWidth } from './nodeWidths';
-export { BUBBLE_SPREADS } from './bubbleSpreads';
-export type { BubbleSpread } from './bubbleSpreads';
-export { REFERENCE_RAMP_MAX_HUE, buildGeometry, computeReferenceRamp, } from './renderer/GeometryBuilder';
-export { Canvas2DRenderer } from './renderer/Canvas2DRenderer';
+export { FIT_PADDING, clampZoom, drawingBounds, engineRequest, fitTransform, forceLayout, layoutExtent, loadGraph, } from './pipeline.js';
+export type { Bounds, EngineRequest, EngineSettings, LayoutEngine, } from './pipeline.js';
+export { FORCE_LAYOUT_LABEL, LAYOUT_MODES, layoutModeByValue, modeUsesLayoutEngine, } from './layoutModes.js';
+export type { LayoutModeValue } from './layoutModes.js';
+export { COLOR_SCHEMES, resolveColorScheme } from './colorSchemes.js';
+export type { ColorScheme, ResolvedColorScheme } from './colorSchemes.js';
+export { NODE_WIDTHS, maxNodeWidthPx, meanDepth, nodeInk, nodeWidthPx, } from './nodeWidths.js';
+export type { NodeWidth } from './nodeWidths.js';
+export { BUBBLE_SPREADS } from './bubbleSpreads.js';
+export type { BubbleSpread } from './bubbleSpreads.js';
+export { REFERENCE_RAMP_MAX_HUE, buildGeometry, computeReferenceRamp, } from './renderer/GeometryBuilder.js';
+export { Canvas2DRenderer } from './renderer/Canvas2DRenderer.js';
 export { getDpr } from '@jbrowse/render-core/canvas2dUtils';
-export type { Renderer } from './renderer/types';
-export { findHoveredEdge, findHoveredNode } from './util/hitDetection';
-export type { NodeInk } from './util/hitDetection';
-export type { AxisScale } from './util/geometry';
-export { wheelZoomFactor } from './util/wheelZoom';
-export { drawTubeMap, tubeMapPicture } from './tubeMap/draw';
-export type { TubeMapFrame, TubeMapPicture } from './tubeMap/draw';
-export { referenceKnots, warpX } from './tubeMap/warp';
-export { tubeMapFrame, tubeMapNodeAt } from './tubeMap/frame';
-export type { TubeMapTransform, TubeMapView } from './tubeMap/frame';
-export type { TubeMapColumn, TubeMapDrawing } from './layout/tubeMapLayout';
-export { deletionEdges } from './deletionEdges';
-export type { DeletionEdge } from './deletionEdges';
-export { walkHighlight } from './walkHighlight';
-export { pathColorsLegible, pathLegend } from './pathColors';
-export { bubblesFromGraph } from './bubbles/bubblesFromGraph';
-export { bubbleHalos } from './bubbles/bubbleHalos';
-export type { BubbleHalo } from './bubbles/bubbleHalos';
-export { BUBBLE_KIND_COLORS, BUBBLE_KIND_NAMES, bubbleSegmentIds, classifyBubble, } from './bubbles/classifyBubble';
-export { bubbleSubgraph } from './bubbles/popBubble';
-export type { MinigraphBubble } from './bubbles/bubbleLine';
-export { walkRows } from './layout/walkRows';
-export type { WalkRows } from './layout/walkRows';
-export { walkRowsExtent } from './layout/walkRowLayout';
-export { ROW_HEIGHT_PX } from './layout/rowSpacing';
-export { HALO_FACTOR, LEGEND_INSET_PX, layoutLabels } from './labelLayout';
-export type { BubbleGlyph, LabelLayout, LabelLayoutSource } from './labelLayout';
-export { formatBp } from './graphLabels';
-export { LABEL_CHAR_PX, LABEL_PAD, LABEL_PX } from './overlayLabels';
-export type { Graph, GraphEdge, GraphNode, LayoutResult, NodeSegment, } from './types';
-export { cutWindowGFA, haplotypeWanted, referencePathQuery, referenceSamplesOf, resolveReferenceSample, } from './gbzWindow';
-export type { GbzWindowOptions } from './gbzWindow';
-export { engineKey } from './pipeline';
-export { axisScaleOf, contains, padded, screenToLayout, viewportOf, zoomAbout, } from './viewport';
-export type { PaneTransform } from './viewport';
-export { default as loadBandage } from './loadBandage';
-export { panSNContig, panSNHaplotype, panSNSample } from './pansn';
+export type { Renderer } from './renderer/types.js';
+export { findHoveredEdge, findHoveredNode } from './util/hitDetection.js';
+export type { NodeInk } from './util/hitDetection.js';
+export type { AxisScale } from './util/geometry.js';
+export { wheelZoomFactor } from './util/wheelZoom.js';
+export { drawTubeMap, tubeMapPicture } from './tubeMap/draw.js';
+export type { TubeMapFrame, TubeMapPicture } from './tubeMap/draw.js';
+export { referenceKnots, warpX } from './tubeMap/warp.js';
+export { tubeMapFrame, tubeMapNodeAt } from './tubeMap/frame.js';
+export type { TubeMapTransform, TubeMapView } from './tubeMap/frame.js';
+export type { TubeMapColumn, TubeMapDrawing } from './layout/tubeMapLayout.js';
+export { deletionEdges } from './deletionEdges.js';
+export type { DeletionEdge } from './deletionEdges.js';
+export { walkHighlight } from './walkHighlight.js';
+export { pathColorsLegible, pathLegend } from './pathColors.js';
+export { bubblesFromGraph } from './bubbles/bubblesFromGraph.js';
+export { bubbleHalos } from './bubbles/bubbleHalos.js';
+export type { BubbleHalo } from './bubbles/bubbleHalos.js';
+export { BUBBLE_KIND_COLORS, BUBBLE_KIND_NAMES, bubbleSegmentIds, classifyBubble, } from './bubbles/classifyBubble.js';
+export { bubbleSubgraph } from './bubbles/popBubble.js';
+export type { MinigraphBubble } from './bubbles/bubbleLine.js';
+export { walkRows } from './layout/walkRows.js';
+export type { WalkRows } from './layout/walkRows.js';
+export { walkRowsExtent } from './layout/walkRowLayout.js';
+export { ROW_HEIGHT_PX } from './layout/rowSpacing.js';
+export { HALO_FACTOR, LEGEND_INSET_PX, layoutLabels } from './labelLayout.js';
+export type { BubbleGlyph, LabelLayout, LabelLayoutSource } from './labelLayout.js';
+export { formatBp } from './graphLabels.js';
+export { LABEL_CHAR_PX, LABEL_PAD, LABEL_PX } from './overlayLabels.js';
+export type { Graph, GraphEdge, GraphNode, LayoutResult, NodeSegment, } from './types.js';
+export { cutWindowGFA, haplotypeWanted, referencePathQuery, referenceSamplesOf, resolveReferenceSample, } from './gbzWindow.js';
+export type { GbzWindowOptions } from './gbzWindow.js';
+export { engineKey } from './pipeline.js';
+export { axisScaleOf, contains, padded, screenToLayout, viewportOf, zoomAbout, } from './viewport.js';
+export type { PaneTransform } from './viewport.js';
+export { default as loadBandage } from './loadBandage.js';
+export { panSNContig, panSNHaplotype, panSNSample } from './pansn.js';

package/dist/types/labelLayout.d.ts

@@ -1,12 +1,12 @@
-import type { BubbleHalo, RouteLabel } from './bubbles/bubbleHalos';
-import type { MinigraphBubble } from './bubbles/bubbleLine';
-import type { BubbleKind } from './bubbles/classifyBubble';
-import type { DeletionEdge } from './deletionEdges';
-import type { GenePin } from './genes/genePins';
-import type { GraphLabel } from './graphLabels';
-import type { PlacedLabel } from './overlayLabels';
-import type { AlleleDeletion, NodeSegment } from './types';
-import type { AxisScale } from './util/geometry';
+import type { BubbleHalo, RouteLabel } from './bubbles/bubbleHalos.js';
+import type { MinigraphBubble } from './bubbles/bubbleLine.js';
+import type { BubbleKind } from './bubbles/classifyBubble.js';
+import type { DeletionEdge } from './deletionEdges.js';
+import type { GenePin } from './genes/genePins.js';
+import type { GraphLabel } from './graphLabels.js';
+import type { PlacedLabel } from './overlayLabels.js';
+import type { AlleleDeletion, NodeSegment } from './types.js';
+import type { AxisScale } from './util/geometry.js';
 export declare const HALO_FACTOR = 3.4;
 export declare const LEGEND_INSET_PX = 6;
 export interface BubbleGlyph {

package/dist/types/layout/anchoredLayout.d.ts

@@ -1,4 +1,4 @@
-import type { Graph, LayoutResult } from '../types';
+import type { Graph, LayoutResult } from '../types.js';
 export declare function anchoredLayout(graph: Graph, region?: {
     start: number;
     end: number;

package/dist/types/layout/drawnScale.d.ts

@@ -1,4 +1,4 @@
-import type { Graph, GraphNode } from '../types';
+import type { Graph, GraphNode } from '../types.js';
 export interface BandageScaleOpts {
     nodeLengthPerMegabase: number;
     minimumNodeLength: number;

package/dist/types/layout/mergeRuns.d.ts

@@ -1,4 +1,4 @@
-import type { Graph, NodeSegment } from '../types';
+import type { Graph, NodeSegment } from '../types.js';
 export interface MergedRuns {
     graph: Graph;
     runs: Map<string, string[]>;

package/dist/types/layout/orderedLayout.d.ts

@@ -1,4 +1,4 @@
-import type { Graph, LayoutResult } from '../types';
+import type { Graph, LayoutResult } from '../types.js';
 export declare function referenceOrder(graph: Graph): string[];
 export interface LayeredGraph {
     layers: string[][];

package/dist/types/layout/orientToReference.d.ts

@@ -1,4 +1,4 @@
-import type { Graph, NodeSegment } from '../types';
+import type { Graph, NodeSegment } from '../types.js';
 type Positions = Record<string, NodeSegment[]>;
 export declare function orientToReference(graph: Graph, positions: Positions): Positions;
 export {};

package/dist/types/layout/placeOffReference.d.ts

@@ -1,4 +1,4 @@
-import type { AlleleDeletion, Graph, NodeSegment } from '../types';
+import type { AlleleDeletion, Graph, NodeSegment } from '../types.js';
 interface PlaceArgs {
     graph: Graph;
     span: number;

package/dist/types/layout/referenceSeeds.d.ts

@@ -1,5 +1,5 @@
-import type { LayoutScaling } from './drawnScale';
-import type { Graph, GraphNode } from '../types';
+import type { LayoutScaling } from './drawnScale.js';
+import type { Graph, GraphNode } from '../types.js';
 export type LayoutNode = GraphNode & {
     x?: number;
     y?: number;

package/dist/types/layout/sampleRowLayout.d.ts

@@ -1,4 +1,4 @@
-import type { Graph, LayoutResult } from '../types';
+import type { Graph, LayoutResult } from '../types.js';
 export declare function sampleRowLayout(graph: Graph, region?: {
     start: number;
     end: number;

package/dist/types/layout/tubeMapLayout.d.ts

@@ -1,4 +1,4 @@
-import type { Graph, LayoutResult } from '../types';
+import type { Graph, LayoutResult } from '../types.js';
 import type { InputTrack, TubeMapLayout } from '@gmod/tubemap-core';
 export interface TubeMapColumn {
     order: number;

package/dist/types/layout/variantMapLayout.d.ts

@@ -1,2 +1,2 @@
-import type { Graph, LayoutResult } from '../types';
+import type { Graph, LayoutResult } from '../types.js';
 export declare function variantMapLayout(graph: Graph): LayoutResult | undefined;

package/dist/types/layout/walkRowLayout.d.ts

@@ -1,5 +1,5 @@
-import type { WalkRows } from './walkRows';
-import type { Graph, LayoutResult } from '../types';
+import type { WalkRows } from './walkRows.js';
+import type { Graph, LayoutResult } from '../types.js';
 export declare function walkRowsExtent(walks: WalkRows): {
     maxX: number;
     maxY: number;

package/dist/types/layout/walkRows.d.ts

@@ -1,4 +1,4 @@
-import type { Graph } from '../types';
+import type { Graph } from '../types.js';
 export interface WalkRun {
     start: number;
     bp: number;

package/dist/types/layoutModes.d.ts

@@ -1,10 +1,10 @@
-import { anchoredLayout } from './layout/anchoredLayout';
-import { orderedLayout } from './layout/orderedLayout';
-import { sampleRowLayout } from './layout/sampleRowLayout';
-import { hasTubeMapPaths, tubeMapLayout, tubeMapReferenceLayout } from './layout/tubeMapLayout';
-import { variantMapLayout } from './layout/variantMapLayout';
-import { walkRowLayout } from './layout/walkRowLayout';
-import type { Graph, LayoutResult } from './types';
+import { anchoredLayout } from './layout/anchoredLayout.js';
+import { orderedLayout } from './layout/orderedLayout.js';
+import { sampleRowLayout } from './layout/sampleRowLayout.js';
+import { hasTubeMapPaths, tubeMapLayout, tubeMapReferenceLayout } from './layout/tubeMapLayout.js';
+import { variantMapLayout } from './layout/variantMapLayout.js';
+import { walkRowLayout } from './layout/walkRowLayout.js';
+import type { Graph, LayoutResult } from './types.js';
 export declare const FORCE_LAYOUT_LABEL = "Force-directed layout";
 export interface LayoutMode {
     value: string;

package/dist/types/nodeWidths.d.ts

@@ -1,5 +1,5 @@
-import type { Graph, GraphNode } from './types';
-import type { NodeInk } from './util/hitDetection';
+import type { Graph, GraphNode } from './types.js';
+import type { NodeInk } from './util/hitDetection.js';
 export declare const NODE_WIDTHS: readonly [{
     readonly value: "depth";
     readonly label: "By depth";

package/dist/types/pathAnchoring.d.ts

@@ -1,4 +1,4 @@
-import type { Graph, PathOrigin, PathVisit } from './types';
+import type { Graph, PathOrigin, PathVisit } from './types.js';
 export declare function pathOrigin(pathName: string): {
     name: string;
     start: number;

package/dist/types/pathColors.d.ts

@@ -1,4 +1,4 @@
-import type { GraphPath } from './types';
+import type { GraphPath } from './types.js';
 export declare function nameHue(name: string): number;
 export declare function pathHueAt(index: number, count: number): number;
 export declare const PATH_SATURATION = 0.7;

package/dist/types/pipeline.d.ts

@@ -1,7 +1,7 @@
-import type { BubbleSpread } from './bubbleSpreads';
-import type { LayoutScaling } from './layout/drawnScale';
-import type { LayoutNode } from './layout/referenceSeeds';
-import type { Graph, LayoutResult, NodeSegment } from './types';
+import type { BubbleSpread } from './bubbleSpreads.js';
+import type { LayoutScaling } from './layout/drawnScale.js';
+import type { LayoutNode } from './layout/referenceSeeds.js';
+import type { Graph, LayoutResult, NodeSegment } from './types.js';
 export interface Bounds {
     minX: number;
     minY: number;
@@ -33,9 +33,9 @@ export declare function engineKey(graph: Graph, settings: EngineSettings): strin
 export declare function forceLayout(graph: Graph, settings: EngineSettings, engine: LayoutEngine): Promise<{
     result: {
         nodePositions: Record<string, NodeSegment[]>;
-        rowLabels?: import("./types").RowLabel[];
+        rowLabels?: import("./types.js").RowLabel[];
         sampleRows?: string[];
-        alleleDeletions?: import("./types").AlleleDeletion[];
+        alleleDeletions?: import("./types.js").AlleleDeletion[];
         referenceAxis?: boolean;
         pixelRows?: boolean;
         extent?: {
@@ -44,7 +44,7 @@ export declare function forceLayout(graph: Graph, settings: EngineSettings, engi
             maxX?: number;
             maxY?: number;
         };
-        tubeMap?: import(".").TubeMapDrawing;
+        tubeMap?: import("./index.js").TubeMapDrawing;
     };
     duration: number;
 }>;

package/dist/types/referenceSpan.d.ts

@@ -1,4 +1,4 @@
-import type { Graph, GraphNode } from './types';
+import type { Graph, GraphNode } from './types.js';
 export interface ReferenceSpan {
     start: number;
     end: number;

package/dist/types/renderer/Canvas2DRenderer.d.ts

@@ -1,5 +1,5 @@
 import { Canvas2DRenderingBackendBase } from '@jbrowse/render-core/renderingBackendBase';
-import type { Arrowhead, RenderBatch, Renderer, TransformUniform } from './types';
+import type { Arrowhead, RenderBatch, Renderer, TransformUniform } from './types.js';
 export declare class Canvas2DRenderer extends Canvas2DRenderingBackendBase implements Renderer {
     private transform;
     private batch;

package/dist/types/renderer/GeometryBuilder.d.ts

@@ -1,9 +1,9 @@
-import type { ResolvedColorScheme } from '../colorSchemes';
-import type { NodeWidth } from '../nodeWidths';
-import type { Graph, GraphNode, NodeSegment } from '../types';
-import type { WalkHighlight } from '../walkHighlight';
-import type { RenderBatch } from './types';
-import type { AxisScale, BezierCurve } from '../util/geometry';
+import type { ResolvedColorScheme } from '../colorSchemes.js';
+import type { NodeWidth } from '../nodeWidths.js';
+import type { Graph, GraphNode, NodeSegment } from '../types.js';
+import type { WalkHighlight } from '../walkHighlight.js';
+import type { RenderBatch } from './types.js';
+import type { AxisScale, BezierCurve } from '../util/geometry.js';
 export interface BuildOptions {
     nodePositions: Record<string, NodeSegment[]>;
     graph: Graph;

package/dist/types/renderer/types.d.ts

@@ -1,4 +1,4 @@
-import type { BezierCurve } from '../util/geometry';
+import type { BezierCurve } from '../util/geometry.js';
 export interface EdgeCurveBatch {
     curves: BezierCurve[];
     thickness: number;

package/dist/types/tubeMap/draw.d.ts

@@ -1,5 +1,5 @@
-import type { TubeMapTransform } from './frame';
-import type { TubeMapMismatch } from './mismatches';
+import type { TubeMapTransform } from './frame.js';
+import type { TubeMapMismatch } from './mismatches.js';
 import type { TubeMapLayout } from '@gmod/tubemap-core';
 type Command = {
     op: 'M' | 'L';

package/dist/types/tubeMap/frame.d.ts

@@ -1,4 +1,4 @@
-import type { TubeMapDrawing } from '../layout/tubeMapLayout';
+import type { TubeMapDrawing } from '../layout/tubeMapLayout.js';
 export interface TubeMapView {
     scaleX: number;
     translateX: number;

package/dist/types/tubeMap/reads.d.ts

@@ -1,5 +1,5 @@
-import type { GafRecord } from '../gaf/parseGaf';
-import type { Graph, GraphNode } from '../types';
+import type { GafRecord } from '../gaf/parseGaf.js';
+import type { Graph, GraphNode } from '../types.js';
 import type { InputTrack } from '@gmod/tubemap-core';
 export declare function canonicalStrand(node: GraphNode): "+" | "-";
 export declare function stepName(node: GraphNode, strand: '+' | '-'): string;

package/dist/types/tubeMap/warp.d.ts

@@ -1,4 +1,4 @@
-import type { TubeMapColumn } from '../layout/tubeMapLayout';
+import type { TubeMapColumn } from '../layout/tubeMapLayout.js';
 export interface Knot {
     tx: number;
     sx: number;

package/dist/types/types.d.ts

@@ -1,6 +1,6 @@
-import type { GafRecord } from './gaf/parseGaf';
-import type { StableCoordinate } from './gfa-core/index';
-import type { TubeMapDrawing } from './layout/tubeMapLayout';
+import type { GafRecord } from './gaf/parseGaf.js';
+import type { StableCoordinate } from './gfa-core/index.js';
+import type { TubeMapDrawing } from './layout/tubeMapLayout.js';
 export interface GraphNode {
     id: string;
     name: string;

package/dist/types/util/SpatialIndex.d.ts

@@ -1,5 +1,5 @@
-import type { Graph, NodeSegment } from '../types';
-import type { AxisScale } from './geometry';
+import type { Graph, NodeSegment } from '../types.js';
+import type { AxisScale } from './geometry.js';
 interface CellEntry {
     nodeId: string;
     segmentIdx: number;
@@ -19,7 +19,7 @@ export declare class EdgeSpatialIndex {
     private cells;
     private edgeCurves;
     constructor(nodePositions: Record<string, NodeSegment[]>, graph: Graph, drawPaths: boolean, axis: AxisScale, cellSize?: number | CellSize, deletions?: Map<number, string[]>, version?: number);
-    getCurves(ei: number): import("./geometry").BezierCurve[] | undefined;
+    getCurves(ei: number): import("./geometry.js").BezierCurve[] | undefined;
     query(x: number, y: number, radiusX: number, radiusY?: number): number[];
 }
 export {};

package/dist/types/util/edgeCurves.d.ts

@@ -1,4 +1,4 @@
-import type { Graph, NodeSegment } from '../types';
-import type { AxisScale, BezierCurve } from './geometry';
+import type { Graph, NodeSegment } from '../types.js';
+import type { AxisScale, BezierCurve } from './geometry.js';
 export type EdgeCurves = Map<number, BezierCurve[]>;
 export declare function baseEdgeCurves(nodePositions: Record<string, NodeSegment[]>, graph: Graph, axis: AxisScale, deletions: Map<number, string[]> | undefined, version: number): EdgeCurves;

package/dist/types/util/geometry.d.ts

@@ -1,4 +1,4 @@
-import type { GraphEdge, NodeSegment } from '../types';
+import type { GraphEdge, NodeSegment } from '../types.js';
 export declare function svgPath(points: NodeSegment[]): string;
 export declare function projectLine(x1: number, y1: number, x2: number, y2: number, distance: number): [number, number];
 export interface BezierCurve {

package/dist/types/util/hitDetection.d.ts

@@ -1,5 +1,5 @@
-import type { Graph, NodeSegment } from '../types';
-import type { AxisScale } from './geometry';
+import type { Graph, NodeSegment } from '../types.js';
+import type { AxisScale } from './geometry.js';
 export declare function distanceToSegment(px: number, py: number, x1: number, y1: number, x2: number, y2: number): number;
 export declare function distanceToCubicBezier(px: number, py: number, x1: number, y1: number, cx1: number, cy1: number, cx2: number, cy2: number, x2: number, y2: number): number;
 export interface NodeInk {

package/dist/types/viewport.d.ts

@@ -1,5 +1,5 @@
-import type { Bounds } from './pipeline';
-import type { AxisScale } from './util/geometry';
+import type { Bounds } from './pipeline.js';
+import type { AxisScale } from './util/geometry.js';
 export interface PaneTransform {
     scale: number;
     translateX: number;

package/dist/types/walkHighlight.d.ts

@@ -1,4 +1,4 @@
-import type { Graph } from './types';
+import type { Graph } from './types.js';
 export interface WalkHighlight {
     name: string;
     nodeIds: Set<string>;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/bandage-core",
-  "version": "0.1.1",
+  "version": "0.1.4",
   "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
   "license": "GPL-3.0-or-later",
   "repository": {
@@ -28,7 +28,7 @@
     "dist"
   ],
   "dependencies": {
-    "@gmod/gbz-base": "^2.8.0",
+    "@gmod/gbz-base": "^3.0.0",
     "@gmod/tubemap-core": "^0.1.0",
     "@jbrowse/core": "5.0.0-beta.9",
     "@jbrowse/render-core": "5.0.0-beta.9"