@jbrowse/app-core 4.1.3 → 4.1.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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@@ -2,7 +2,7 @@ import type PluginManager from '@jbrowse/core/PluginManager';
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import type { BaseAssemblyConfigSchema } from '@jbrowse/core/assemblyManager';
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import type { AnyConfiguration } from '@jbrowse/core/configuration';
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export declare function SessionAssembliesMixin(pluginManager: PluginManager, assemblyConfigSchemasType: BaseAssemblyConfigSchema): import("@jbrowse/mobx-state-tree").IModelType<{
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sessionAssemblies: import("@jbrowse/mobx-state-tree").IArrayType<import("
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sessionAssemblies: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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aliases: {
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type: string;
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defaultValue: never[];
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@@ -14,18 +14,18 @@ export declare function SessionAssembliesMixin(pluginManager: PluginManager, ass
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defaultValue: never[];
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description: string;
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};
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refNameAliases: import("
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refNameAliases: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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adapter: import("@jbrowse/mobx-state-tree").IAnyModelType;
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}, import("
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cytobands: import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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cytobands: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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adapter: import("@jbrowse/mobx-state-tree").IAnyModelType;
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}, import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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displayName: {
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type: string;
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defaultValue: string;
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description: string;
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};
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}, import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>>;
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}, {
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addSessionAssembly(conf: AnyConfiguration): ({
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[x: string]: any;
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@@ -37,7 +37,7 @@ export declare function SessionAssembliesMixin(pluginManager: PluginManager, ass
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[x: string]: any;
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} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("
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} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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aliases: {
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type: string;
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defaultValue: never[];
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@@ -49,23 +49,23 @@ export declare function SessionAssembliesMixin(pluginManager: PluginManager, ass
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defaultValue: never[];
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description: string;
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};
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refNameAliases: import("
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refNameAliases: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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adapter: import("@jbrowse/mobx-state-tree").IAnyModelType;
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}, import("
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cytobands: import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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cytobands: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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adapter: import("@jbrowse/mobx-state-tree").IAnyModelType;
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}, import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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displayName: {
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type: string;
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defaultValue: string;
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description: string;
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};
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}, import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>>) | undefined;
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addAssembly(conf: AnyConfiguration): void;
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removeAssembly(name: string): void;
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removeSessionAssembly(assemblyName: string): void;
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}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
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sessionAssemblies: import("@jbrowse/mobx-state-tree").IArrayType<import("
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sessionAssemblies: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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aliases: {
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type: string;
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defaultValue: never[];
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@@ -77,16 +77,16 @@ export declare function SessionAssembliesMixin(pluginManager: PluginManager, ass
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defaultValue: never[];
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description: string;
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};
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refNameAliases: import("
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refNameAliases: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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adapter: import("@jbrowse/mobx-state-tree").IAnyModelType;
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}, import("
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cytobands: import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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cytobands: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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adapter: import("@jbrowse/mobx-state-tree").IAnyModelType;
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}, import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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displayName: {
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type: string;
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defaultValue: string;
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description: string;
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};
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}, import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>>;
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}>>;
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@@ -1,20 +1,20 @@
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import type PluginManager from '@jbrowse/core/PluginManager';
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export default function RootConfiguration({ pluginManager, }: {
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pluginManager: PluginManager;
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}): import("
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rpc: import("
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}): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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rpc: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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defaultDriver: {
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type: string;
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description: string;
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defaultValue: string;
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};
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drivers: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("@jbrowse/mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
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}, import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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highResolutionScaling: {
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type: string;
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defaultValue: number;
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};
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formatDetails: import("
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formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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feature: {
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type: string;
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description: string;
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@@ -37,8 +37,8 @@ export default function RootConfiguration({ pluginManager, }: {
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defaultValue: number;
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description: string;
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};
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}, import("
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formatAbout: import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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config: {
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type: string;
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description: string;
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@@ -49,7 +49,7 @@ export default function RootConfiguration({ pluginManager, }: {
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type: string;
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defaultValue: boolean;
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};
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}, import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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shareURL: {
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type: string;
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defaultValue: string;
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@@ -58,8 +58,8 @@ export default function RootConfiguration({ pluginManager, }: {
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type: string;
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defaultValue: boolean;
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};
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hierarchical: import("
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sort: import("
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hierarchical: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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sort: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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trackNames: {
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type: string;
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defaultValue: boolean;
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@@ -68,8 +68,8 @@ export default function RootConfiguration({ pluginManager, }: {
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type: string;
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defaultValue: boolean;
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};
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}, import("
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defaultCollapsed: import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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defaultCollapsed: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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categoryNames: {
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type: string;
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defaultValue: never[];
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type: string;
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defaultValue: boolean;
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};
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}, import("
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}, import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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theme: {
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type: string;
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defaultValue: {};
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@@ -99,4 +99,4 @@ export default function RootConfiguration({ pluginManager, }: {
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locationType: string;
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};
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};
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}, import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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@@ -6,20 +6,20 @@ export declare function JBrowseConfigF({ pluginManager, assemblyConfigSchema, }:
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assemblyConfigSchema: AnyConfigurationSchemaType;
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adminMode?: boolean;
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}): import("@jbrowse/mobx-state-tree").IModelType<{
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configuration: import("
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rpc: import("
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configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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rpc: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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defaultDriver: {
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type: string;
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description: string;
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defaultValue: string;
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};
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drivers: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("@jbrowse/mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
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}, import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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highResolutionScaling: {
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type: string;
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defaultValue: number;
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};
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formatDetails: import("
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formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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feature: {
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type: string;
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description: string;
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@@ -42,8 +42,8 @@ export declare function JBrowseConfigF({ pluginManager, assemblyConfigSchema, }:
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defaultValue: number;
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description: string;
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};
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}, import("
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formatAbout: import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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config: {
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type: string;
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description: string;
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type: string;
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defaultValue: boolean;
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};
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}, import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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shareURL: {
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defaultValue: string;
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defaultValue: boolean;
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};
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hierarchical: import("
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sort: import("
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hierarchical: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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sort: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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trackNames: {
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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defaultCollapsed: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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categoryNames: {
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type: string;
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defaultValue: never[];
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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theme: {
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type: string;
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defaultValue: {};
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locationType: string;
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};
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};
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}, import("
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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plugins: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<PluginDefinition, PluginDefinition, PluginDefinition>>;
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assemblies: import("@jbrowse/mobx-state-tree").IArrayType<AnyConfigurationSchemaType>;
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tracks: import("@jbrowse/mobx-state-tree").IType<{
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pluginManager: PluginManager;
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assemblyConfigSchema: BaseAssemblyConfigSchema;
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}): import("@jbrowse/mobx-state-tree").IModelType<{
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configuration: import("
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rpc: import("
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configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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rpc: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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defaultDriver: {
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type: string;
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description: string;
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defaultValue: string;
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};
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drivers: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("@jbrowse/mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
|
|
19
|
-
}, import("
|
|
19
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
20
20
|
highResolutionScaling: {
|
|
21
21
|
type: string;
|
|
22
22
|
defaultValue: number;
|
|
23
23
|
};
|
|
24
|
-
formatDetails: import("
|
|
24
|
+
formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
25
25
|
feature: {
|
|
26
26
|
type: string;
|
|
27
27
|
description: string;
|
|
@@ -44,8 +44,8 @@ export declare function JBrowseModelF({ pluginManager, assemblyConfigSchema, }:
|
|
|
44
44
|
defaultValue: number;
|
|
45
45
|
description: string;
|
|
46
46
|
};
|
|
47
|
-
}, import("
|
|
48
|
-
formatAbout: import("
|
|
47
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
48
|
+
formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
49
49
|
config: {
|
|
50
50
|
type: string;
|
|
51
51
|
description: string;
|
|
@@ -56,7 +56,7 @@ export declare function JBrowseModelF({ pluginManager, assemblyConfigSchema, }:
|
|
|
56
56
|
type: string;
|
|
57
57
|
defaultValue: boolean;
|
|
58
58
|
};
|
|
59
|
-
}, import("
|
|
59
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
60
60
|
shareURL: {
|
|
61
61
|
type: string;
|
|
62
62
|
defaultValue: string;
|
|
@@ -65,8 +65,8 @@ export declare function JBrowseModelF({ pluginManager, assemblyConfigSchema, }:
|
|
|
65
65
|
type: string;
|
|
66
66
|
defaultValue: boolean;
|
|
67
67
|
};
|
|
68
|
-
hierarchical: import("
|
|
69
|
-
sort: import("
|
|
68
|
+
hierarchical: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
69
|
+
sort: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
70
70
|
trackNames: {
|
|
71
71
|
type: string;
|
|
72
72
|
defaultValue: boolean;
|
|
@@ -75,8 +75,8 @@ export declare function JBrowseModelF({ pluginManager, assemblyConfigSchema, }:
|
|
|
75
75
|
type: string;
|
|
76
76
|
defaultValue: boolean;
|
|
77
77
|
};
|
|
78
|
-
}, import("
|
|
79
|
-
defaultCollapsed: import("
|
|
78
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
79
|
+
defaultCollapsed: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
80
80
|
categoryNames: {
|
|
81
81
|
type: string;
|
|
82
82
|
defaultValue: never[];
|
|
@@ -89,8 +89,8 @@ export declare function JBrowseModelF({ pluginManager, assemblyConfigSchema, }:
|
|
|
89
89
|
type: string;
|
|
90
90
|
defaultValue: boolean;
|
|
91
91
|
};
|
|
92
|
-
}, import("
|
|
93
|
-
}, import("
|
|
92
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
93
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
94
94
|
theme: {
|
|
95
95
|
type: string;
|
|
96
96
|
defaultValue: {};
|
|
@@ -106,7 +106,7 @@ export declare function JBrowseModelF({ pluginManager, assemblyConfigSchema, }:
|
|
|
106
106
|
locationType: string;
|
|
107
107
|
};
|
|
108
108
|
};
|
|
109
|
-
}, import("
|
|
109
|
+
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
110
110
|
plugins: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IType<PluginDefinition, PluginDefinition, PluginDefinition>>;
|
|
111
111
|
assemblies: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
|
|
112
112
|
tracks: import("@jbrowse/mobx-state-tree").IType<{
|
package/esm/ui/App/ViewHeader.js
CHANGED
|
@@ -37,7 +37,7 @@ const ViewHeader = observer(function ViewHeader({ view, onClose, onMinimize, cla
|
|
|
37
37
|
({ stickyViewHeaders } = session);
|
|
38
38
|
}
|
|
39
39
|
useEffect(() => {
|
|
40
|
-
if (typeof jest === 'undefined') {
|
|
40
|
+
if (typeof jest === 'undefined' && window.self === window.top) {
|
|
41
41
|
scrollRef.current?.scrollIntoView({ block: 'center' });
|
|
42
42
|
}
|
|
43
43
|
}, []);
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/app-core",
|
|
3
|
-
"version": "4.1.
|
|
3
|
+
"version": "4.1.5",
|
|
4
4
|
"type": "module",
|
|
5
5
|
"description": "JBrowse 2 code shared between the 'full featured' apps e.g. jbrowse-web and jbrowse-desktop",
|
|
6
6
|
"keywords": [
|
|
@@ -25,14 +25,14 @@
|
|
|
25
25
|
],
|
|
26
26
|
"dependencies": {
|
|
27
27
|
"@jbrowse/mobx-state-tree": "^5.5.0",
|
|
28
|
-
"@mui/icons-material": "^7.3.
|
|
29
|
-
"@mui/material": "^7.3.
|
|
28
|
+
"@mui/icons-material": "^7.3.8",
|
|
29
|
+
"@mui/material": "^7.3.8",
|
|
30
30
|
"dockview-core": "^4.13.1",
|
|
31
31
|
"dockview-react": "^4.13.1",
|
|
32
32
|
"mobx": "^6.15.0",
|
|
33
33
|
"mobx-react": "^9.2.1",
|
|
34
|
-
"@jbrowse/core": "^4.1.
|
|
35
|
-
"@jbrowse/product-core": "^4.1.
|
|
34
|
+
"@jbrowse/core": "^4.1.5",
|
|
35
|
+
"@jbrowse/product-core": "^4.1.5"
|
|
36
36
|
},
|
|
37
37
|
"peerDependencies": {
|
|
38
38
|
"react": ">=18.0.0",
|