@jbrowse/add-track-core 5.0.0-beta.2 → 5.0.0-beta.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/formats.js +2 -2
- package/esm/trackTypes.generated.js +3 -2
- package/package.json +1 -1
package/esm/formats.js
CHANGED
|
@@ -345,7 +345,7 @@ export const formats = [
|
|
|
345
345
|
// mapping come from its add-track form
|
|
346
346
|
spec: {
|
|
347
347
|
kind: 'single',
|
|
348
|
-
adapterType: '
|
|
348
|
+
adapterType: 'MultiGenomePAFAdapter',
|
|
349
349
|
locField: 'pafLocation',
|
|
350
350
|
},
|
|
351
351
|
},
|
|
@@ -353,7 +353,7 @@ export const formats = [
|
|
|
353
353
|
// likewise an all-vs-all PIF against a pairwise one
|
|
354
354
|
spec: {
|
|
355
355
|
kind: 'indexed',
|
|
356
|
-
adapterType: '
|
|
356
|
+
adapterType: 'MultiGenomeIndexedPAFAdapter',
|
|
357
357
|
locField: 'pifGzLocation',
|
|
358
358
|
suffix: '.tbi',
|
|
359
359
|
indexType: 'TBI',
|
|
@@ -6,8 +6,6 @@
|
|
|
6
6
|
* fall back to `FeatureTrack`.
|
|
7
7
|
*/
|
|
8
8
|
export const adapterTypesToTrackTypeMap = {
|
|
9
|
-
AllVsAllIndexedPAFAdapter: 'SyntenyTrack',
|
|
10
|
-
AllVsAllPAFAdapter: 'SyntenyTrack',
|
|
11
9
|
BamAdapter: 'AlignmentsTrack',
|
|
12
10
|
BedAdapter: 'FeatureTrack',
|
|
13
11
|
BedGraphAdapter: 'QuantitativeTrack',
|
|
@@ -43,6 +41,9 @@ export const adapterTypesToTrackTypeMap = {
|
|
|
43
41
|
MCScanAnchorsAdapter: 'SyntenyTrack',
|
|
44
42
|
MCScanBlocksAdapter: 'SyntenyTrack',
|
|
45
43
|
MCScanSimpleAnchorsAdapter: 'SyntenyTrack',
|
|
44
|
+
MultiGenomeIndexedPAFAdapter: 'SyntenyTrack',
|
|
45
|
+
MultiGenomePAFAdapter: 'SyntenyTrack',
|
|
46
|
+
MultiPairwiseSyntenyAdapter: 'SyntenyTrack',
|
|
46
47
|
MultiWiggleAdapter: 'MultiQuantitativeTrack',
|
|
47
48
|
NCListAdapter: 'FeatureTrack',
|
|
48
49
|
PAFAdapter: 'SyntenyTrack',
|
package/package.json
CHANGED