@jbrowse/add-track-core 5.0.0-beta.17 → 5.0.0-beta.18

package/esm/index.d.ts

@@ -1,4 +1,4 @@
 export { type AdapterSpec, type FormatEntry, type Sidecar, fileNameOf, formats, matchFormat, trackTypeForAdapter, } from './formats.ts';
-export { indexCandidateNames, indexSpellings, resolveIndexType, sidecarCandidateNames, } from './indexCandidates.ts';
+export { indexCandidateNames, indexSpellings, pairIndexFiles, resolveIndexType, sidecarCandidateNames, } from './indexCandidates.ts';
 export { type LooseTrackInput, isLooseTrackConfig } from './looseTrackConfig.ts';
 export { adapterTypesToTrackTypeMap } from './trackTypes.generated.ts';

package/esm/index.js

@@ -1,4 +1,4 @@
 export { fileNameOf, formats, matchFormat, trackTypeForAdapter, } from './formats.js';
-export { indexCandidateNames, indexSpellings, resolveIndexType, sidecarCandidateNames, } from './indexCandidates.js';
+export { indexCandidateNames, indexSpellings, pairIndexFiles, resolveIndexType, sidecarCandidateNames, } from './indexCandidates.js';
 export { isLooseTrackConfig } from './looseTrackConfig.js';
 export { adapterTypesToTrackTypeMap } from './trackTypes.generated.js';

package/esm/indexCandidates.d.ts

@@ -25,6 +25,17 @@ export declare function sidecarCandidateNames(location: string, suffix: string):
  * hic), which is how a caller knows not to go looking.
  */
 export declare function indexCandidateNames(fileName: string): string[];
+/**
+ * A selection of files as its data files, each beside the index among them
+ * that names it — `reads.bam` with `reads.bam.bai` or `reads.bai` — so a file
+ * picker's selection opens one track per data file.
+ */
+export declare function pairIndexFiles<T extends {
+    name: string;
+}>(files: readonly T[]): {
+    data: T;
+    index?: T;
+}[];
 /**
  * The index spelling a location implies: htslib writes `.csi` in place of a
  * `.bai` or a `.tbi` for a reference over 512 Mb, and on request at any size.

package/esm/indexCandidates.js

@@ -62,6 +62,18 @@ export function indexCandidateNames(fileName) {
     const suffix = INDEX_SUFFIXES.find(([re]) => re.test(fileName))?.[1];
     return suffix ? sidecarCandidateNames(fileName, suffix) : [];
 }
+/**
+ * A selection of files as its data files, each beside the index among them
+ * that names it — `reads.bam` with `reads.bam.bai` or `reads.bai` — so a file
+ * picker's selection opens one track per data file.
+ */
+export function pairIndexFiles(files) {
+    const indexOf = (data) => files.find(f => indexCandidateNames(data.name).includes(f.name));
+    const indexes = new Set(files.map(indexOf));
+    return files
+        .filter(f => !indexes.has(f))
+        .map(data => ({ data, index: indexOf(data) }));
+}
 /**
  * The index spelling a location implies: htslib writes `.csi` in place of a
  * `.bai` or a `.tbi` for a reference over 512 Mb, and on request at any size.

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/add-track-core",
-  "version": "5.0.0-beta.17",
+  "version": "5.0.0-beta.18",
   "type": "module",
   "description": "The file-format table the add-track guessers and the CLI both read — no framework deps",
   "keywords": [