@jbrowse/add-track-core 5.0.0-beta.1 → 5.0.0-beta.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/formats.js +22 -2
- package/esm/trackTypes.generated.js +3 -2
- package/package.json +1 -1
package/esm/formats.js
CHANGED
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@@ -153,6 +153,26 @@ export const formats = [
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153
153
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indexType: 'TBI',
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154
154
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},
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155
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},
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156
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+
{
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157
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+
// `.bedGraph` is UCSC's own spelling and what bedGraphToBigWig is pointed
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158
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// at, so it turns up far more often than the `.bg` short form below
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159
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+
regex: /\.bedgraph\.b?gz$/i,
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160
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spec: {
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161
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kind: 'indexed',
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162
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adapterType: 'BedGraphTabixAdapter',
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163
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locField: 'bedGraphGzLocation',
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164
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+
suffix: '.tbi',
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165
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indexType: 'TBI',
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166
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},
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167
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},
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168
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{
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169
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regex: /\.bedgraph$/i,
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170
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spec: {
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171
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kind: 'single',
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172
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adapterType: 'BedGraphAdapter',
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173
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locField: 'bedGraphLocation',
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174
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+
},
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175
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+
},
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156
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{
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157
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regex: /\.bg\.b?gz$/i,
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158
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spec: {
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@@ -325,7 +345,7 @@ export const formats = [
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// mapping come from its add-track form
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spec: {
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kind: 'single',
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328
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-
adapterType: '
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348
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+
adapterType: 'MultiGenomePAFAdapter',
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329
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locField: 'pafLocation',
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330
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},
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331
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},
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@@ -333,7 +353,7 @@ export const formats = [
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// likewise an all-vs-all PIF against a pairwise one
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spec: {
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kind: 'indexed',
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336
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-
adapterType: '
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356
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+
adapterType: 'MultiGenomeIndexedPAFAdapter',
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locField: 'pifGzLocation',
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suffix: '.tbi',
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indexType: 'TBI',
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@@ -6,8 +6,6 @@
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6
6
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* fall back to `FeatureTrack`.
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7
7
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*/
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8
8
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export const adapterTypesToTrackTypeMap = {
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9
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-
AllVsAllIndexedPAFAdapter: 'SyntenyTrack',
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10
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AllVsAllPAFAdapter: 'SyntenyTrack',
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11
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BamAdapter: 'AlignmentsTrack',
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BedAdapter: 'FeatureTrack',
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13
11
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BedGraphAdapter: 'QuantitativeTrack',
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@@ -43,6 +41,9 @@ export const adapterTypesToTrackTypeMap = {
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43
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MCScanAnchorsAdapter: 'SyntenyTrack',
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MCScanBlocksAdapter: 'SyntenyTrack',
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MCScanSimpleAnchorsAdapter: 'SyntenyTrack',
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44
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MultiGenomeIndexedPAFAdapter: 'SyntenyTrack',
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45
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MultiGenomePAFAdapter: 'SyntenyTrack',
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MultiPairwiseSyntenyAdapter: 'SyntenyTrack',
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MultiWiggleAdapter: 'MultiQuantitativeTrack',
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47
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NCListAdapter: 'FeatureTrack',
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48
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PAFAdapter: 'SyntenyTrack',
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package/package.json
CHANGED