npm - @jayjiang/byoao - Versions diffs - 0.8.4 → 0.9.1 - Mend

@jayjiang/byoao 0.8.4 → 0.9.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (25) hide show

package/dist/cli/installer.js +15 -4
package/dist/cli/installer.js.map +1 -1
package/dist/hooks/__tests__/system-transform.test.js +37 -0
package/dist/hooks/__tests__/system-transform.test.js.map +1 -0
package/dist/hooks/system-transform.js +11 -3
package/dist/hooks/system-transform.js.map +1 -1
package/dist/vault/__tests__/manifest.test.js +4 -4
package/dist/vault/__tests__/manifest.test.js.map +1 -1
package/dist/vault/__tests__/upgrade.test.js +17 -18
package/dist/vault/__tests__/upgrade.test.js.map +1 -1
package/dist/vault/create.js +5 -2
package/dist/vault/create.js.map +1 -1
package/dist/vault/upgrade.js +21 -3
package/dist/vault/upgrade.js.map +1 -1
package/package.json +1 -1
package/src/assets/obsidian-skills/vault-thinking.md +40 -0
package/src/skills/challenge.md +4 -0
package/src/skills/connect.md +4 -0
package/src/skills/diagnose.md +1 -1
package/src/skills/drift.md +27 -7
package/src/skills/emerge.md +8 -0
package/src/skills/ideas.md +22 -0
package/src/skills/trace.md +8 -0
package/src/skills/weave.md +0 -2
package/src/skills/explain.md +0 -58

package/dist/cli/installer.js CHANGED Viewed

@@ -176,7 +176,10 @@ export async function install(options, interactive = true) {
             let installedCount = 0;
             for (const file of skillFiles) {
                 if (file.endsWith(".md")) {
-                    await fs.copy(path.join(obsidianSkillsSrc, file), path.join(skillsDir, file), { overwrite: true });
+                    const skillName = file.replace(/\.md$/, "");
+                    const destDir = path.join(skillsDir, skillName);
+                    await fs.ensureDir(destDir);
+                    await fs.copy(path.join(obsidianSkillsSrc, file), path.join(destDir, "SKILL.md"), { overwrite: true });
                     installedCount++;
                 }
             }
@@ -270,9 +273,17 @@ export async function uninstall(options, interactive = true) {
                 continue;
             for (const file of skillFiles) {
                 if (file.endsWith(".md")) {
-                    const dest = path.join(skillsDir, file);
-                    if (await fs.pathExists(dest)) {
-                        await fs.remove(dest);
+                    const skillName = file.replace(/\.md$/, "");
+                    // New layout: skills/<name>/SKILL.md
+                    const destDir = path.join(skillsDir, skillName);
+                    if (await fs.pathExists(destDir)) {
+                        await fs.remove(destDir);
+                        removedCount++;
+                    }
+                    // Legacy layout: skills/<name>.md
+                    const legacyDest = path.join(skillsDir, file);
+                    if (await fs.pathExists(legacyDest)) {
+                        await fs.remove(legacyDest);
                         removedCount++;
                     }
                 }

package/dist/cli/installer.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/hooks/__tests__/system-transform.test.js ADDED Viewed

@@ -0,0 +1,37 @@
+import { describe, it, expect, vi, beforeEach, afterEach } from "vitest";
+import { systemTransformHook } from "../system-transform.js";
+import * as vaultDetect from "../../vault/vault-detect.js";
+import * as opencodeConfig from "../../vault/opencode-config.js";
+/** Minimal input matching OpenCode's system.transform hook (model is required). */
+const transformInput = { model: null };
+describe("systemTransformHook", () => {
+    beforeEach(() => {
+        vi.spyOn(vaultDetect, "detectVaultContext").mockReturnValue("/tmp/BYOAO-TestVault");
+        vi.spyOn(opencodeConfig, "readOpencodeConfig").mockResolvedValue({});
+    });
+    afterEach(() => {
+        vi.restoreAllMocks();
+    });
+    it("injects conditional Scope: vault-internal CLI vs outside-vault tools", async () => {
+        const output = { system: [] };
+        await systemTransformHook(transformInput, output);
+        const injected = output.system.join("\n");
+        expect(injected).toContain("### Scope");
+        expect(injected).toContain("Inside the vault");
+        expect(injected).toContain("/tmp/BYOAO-TestVault/");
+        expect(injected).toContain("byoao_search_vault");
+        expect(injected).toContain("byoao_note_read");
+        expect(injected).toContain("byoao_graph_health");
+        expect(injected).toContain("Outside the vault");
+        expect(injected).toContain("freely");
+        expect(injected).not.toContain("Never use grep");
+    });
+    it("skips navigation strategy when no vault is detected", async () => {
+        vi.spyOn(vaultDetect, "detectVaultContext").mockReturnValue(null);
+        const output = { system: [] };
+        await systemTransformHook(transformInput, output);
+        const injected = output.system.join("\n");
+        expect(injected).not.toContain("BYOAO Navigation Strategy");
+    });
+});
+//# sourceMappingURL=system-transform.test.js.map

package/dist/hooks/__tests__/system-transform.test.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"system-transform.test.js","sourceRoot":"","sources":["../../../src/hooks/__tests__/system-transform.test.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,QAAQ,CAAC;AACzE,OAAO,EAAE,mBAAmB,EAAE,MAAM,wBAAwB,CAAC;AAC7D,OAAO,KAAK,WAAW,MAAM,6BAA6B,CAAC;AAC3D,OAAO,KAAK,cAAc,MAAM,gCAAgC,CAAC;AAEjE,mFAAmF;AACnF,MAAM,cAAc,GAAG,EAAE,KAAK,EAAE,IAAe,EAAE,CAAC;AAElD,QAAQ,CAAC,qBAAqB,EAAE,GAAG,EAAE;IACnC,UAAU,CAAC,GAAG,EAAE;QACd,EAAE,CAAC,KAAK,CAAC,WAAW,EAAE,oBAAoB,CAAC,CAAC,eAAe,CACzD,sBAAsB,CACvB,CAAC;QACF,EAAE,CAAC,KAAK,CAAC,cAAc,EAAE,oBAAoB,CAAC,CAAC,iBAAiB,CAAC,EAAE,CAAC,CAAC;IACvE,CAAC,CAAC,CAAC;IAEH,SAAS,CAAC,GAAG,EAAE;QACb,EAAE,CAAC,eAAe,EAAE,CAAC;IACvB,CAAC,CAAC,CAAC;IAEH,EAAE,CAAC,sEAAsE,EAAE,KAAK,IAAI,EAAE;QACpF,MAAM,MAAM,GAAG,EAAE,MAAM,EAAE,EAAc,EAAE,CAAC;QAC1C,MAAM,mBAAmB,CAAC,cAAc,EAAE,MAAM,CAAC,CAAC;QAElD,MAAM,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAE1C,MAAM,CAAC,QAAQ,CAAC,CAAC,SAAS,CAAC,WAAW,CAAC,CAAC;QACxC,MAAM,CAAC,QAAQ,CAAC,CAAC,SAAS,CAAC,kBAAkB,CAAC,CAAC;QAC/C,MAAM,CAAC,QAAQ,CAAC,CAAC,SAAS,CAAC,uBAAuB,CAAC,CAAC;QACpD,MAAM,CAAC,QAAQ,CAAC,CAAC,SAAS,CAAC,oBAAoB,CAAC,CAAC;QACjD,MAAM,CAAC,QAAQ,CAAC,CAAC,SAAS,CAAC,iBAAiB,CAAC,CAAC;QAC9C,MAAM,CAAC,QAAQ,CAAC,CAAC,SAAS,CAAC,oBAAoB,CAAC,CAAC;QACjD,MAAM,CAAC,QAAQ,CAAC,CAAC,SAAS,CAAC,mBAAmB,CAAC,CAAC;QAChD,MAAM,CAAC,QAAQ,CAAC,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC;QACrC,MAAM,CAAC,QAAQ,CAAC,CAAC,GAAG,CAAC,SAAS,CAAC,gBAAgB,CAAC,CAAC;IACnD,CAAC,CAAC,CAAC;IAEH,EAAE,CAAC,qDAAqD,EAAE,KAAK,IAAI,EAAE;QACnE,EAAE,CAAC,KAAK,CAAC,WAAW,EAAE,oBAAoB,CAAC,CAAC,eAAe,CAAC,IAAI,CAAC,CAAC;QAElE,MAAM,MAAM,GAAG,EAAE,MAAM,EAAE,EAAc,EAAE,CAAC;QAC1C,MAAM,mBAAmB,CAAC,cAAc,EAAE,MAAM,CAAC,CAAC;QAElD,MAAM,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAC1C,MAAM,CAAC,QAAQ,CAAC,CAAC,GAAG,CAAC,SAAS,CAAC,2BAA2B,CAAC,CAAC;IAC9D,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC"}

package/dist/hooks/system-transform.js CHANGED Viewed

@@ -37,9 +37,12 @@ function buildNavigationStrategy(vaultPath) {
         "\n---",
         "## BYOAO Navigation Strategy",
         "",
-        `You are in a BYOAO knowledge base at: ${vaultPath}`,
-        "Use the Obsidian CLI (see /obsidian-cli skill) for all vault queries.",
-        "Never use grep/cat/ls for vault content — Obsidian CLI is graph-aware.",
+        "### Scope",
+        "",
+        `This session is connected to a BYOAO knowledge base at: \`${vaultPath}\``,
+        "",
+        `- **Inside the vault** (\`${vaultPath}/\` and its subdirectories): always use Obsidian CLI (see /obsidian-cli skill) or BYOAO tools (\`byoao_search_vault\`, \`byoao_note_read\`, \`byoao_graph_health\`). Obsidian CLI is graph-aware and understands wikilinks, backlinks, and frontmatter — grep/cat/ls do not.`,
+        `- **Outside the vault** (code repositories, config files, system paths, etc.): use any appropriate tool (grep, cat, read, bash, etc.) freely.`,
         "",
         "### Navigation Pattern (Progressive Disclosure)",
         "",
@@ -59,6 +62,11 @@ function buildNavigationStrategy(vaultPath) {
         "| `references`| Related notes — follow for deeper context        |",
         "| `type`      | Note kind (meeting, idea, reference, daily, etc) |",
         "| `tags`      | Flexible categorization                          |",
+        "",
+        "### Vault Health",
+        "",
+        "If you notice broken wikilinks, orphan notes, or missing frontmatter while working,",
+        "suggest that the user run `/diagnose` to get a full vault health report.",
     ].join("\n");
 }
 /**

package/dist/hooks/system-transform.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/vault/__tests__/manifest.test.js CHANGED Viewed

@@ -13,7 +13,7 @@ describe("writeManifest", () => {
     it("creates .byoao/manifest.json with correct structure", async () => {
         const { writeManifest } = await import("../manifest.js");
         const installedFiles = {
-            skills: [".opencode/skills/byoao-conventions.md"],
+            skills: [".opencode/skills/byoao-conventions/SKILL.md"],
             commands: [".opencode/commands/vault-doctor.md"],
             obsidianConfig: [".obsidian/core-plugins.json"],
             templates: ["Knowledge/templates/Daily Note.md"],
@@ -26,7 +26,7 @@ describe("writeManifest", () => {
         expect(manifest.preset).toBe("pm-tpm");
         expect(manifest.createdAt).toBeDefined();
         expect(manifest.updatedAt).toBeDefined();
-        expect(manifest.infrastructure.skills).toEqual([".opencode/skills/byoao-conventions.md"]);
+        expect(manifest.infrastructure.skills).toEqual([".opencode/skills/byoao-conventions/SKILL.md"]);
         expect(manifest.infrastructure.commands).toEqual([".opencode/commands/vault-doctor.md"]);
         expect(manifest.infrastructure.obsidianConfig).toEqual([".obsidian/core-plugins.json"]);
         expect(manifest.infrastructure.templates).toEqual(["Knowledge/templates/Daily Note.md"]);
@@ -43,7 +43,7 @@ describe("readManifest", () => {
     it("returns parsed manifest when valid", async () => {
         const { readManifest, writeManifest } = await import("../manifest.js");
         await writeManifest(tmpDir, "pm-tpm", {
-            skills: [".opencode/skills/test.md"],
+            skills: [".opencode/skills/test/SKILL.md"],
             commands: [],
             obsidianConfig: [],
             templates: [],
@@ -51,7 +51,7 @@ describe("readManifest", () => {
         const result = await readManifest(tmpDir);
         expect(result).not.toBeNull();
         expect(result.preset).toBe("pm-tpm");
-        expect(result.infrastructure.skills).toEqual([".opencode/skills/test.md"]);
+        expect(result.infrastructure.skills).toEqual([".opencode/skills/test/SKILL.md"]);
     });
     it("returns null when manifest does not exist", async () => {
         const { readManifest } = await import("../manifest.js");

package/dist/vault/__tests__/manifest.test.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"manifest.test.js","sourceRoot":"","sources":["../../../src/vault/__tests__/manifest.test.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,EAAE,EAAE,MAAM,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,QAAQ,CAAC;AACrE,OAAO,EAAE,MAAM,UAAU,CAAC;AAC1B,OAAO,IAAI,MAAM,WAAW,CAAC;AAC7B,OAAO,EAAE,MAAM,SAAS,CAAC;AAEzB,IAAI,MAAc,CAAC;AAEnB,UAAU,CAAC,KAAK,IAAI,EAAE;IACpB,MAAM,GAAG,MAAM,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,MAAM,EAAE,EAAE,iBAAiB,CAAC,CAAC,CAAC;AACvE,CAAC,CAAC,CAAC;AAEH,SAAS,CAAC,KAAK,IAAI,EAAE;IACnB,MAAM,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;AAC1B,CAAC,CAAC,CAAC;AAEH,QAAQ,CAAC,eAAe,EAAE,GAAG,EAAE;IAC7B,EAAE,CAAC,qDAAqD,EAAE,KAAK,IAAI,EAAE;QACnE,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,MAAM,CAAC,gBAAgB,CAAC,CAAC;QAEzD,MAAM,cAAc,GAAG;YACrB,MAAM,EAAE,CAAC,6CAA6C,CAAC;YACvD,QAAQ,EAAE,CAAC,oCAAoC,CAAC;YAChD,cAAc,EAAE,CAAC,6BAA6B,CAAC;YAC/C,SAAS,EAAE,CAAC,mCAAmC,CAAC;SACjD,CAAC;QAEF,MAAM,aAAa,CAAC,MAAM,EAAE,QAAQ,EAAE,cAAc,CAAC,CAAC;QAEtD,MAAM,YAAY,GAAG,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,QAAQ,EAAE,eAAe,CAAC,CAAC;QAClE,MAAM,CAAC,MAAM,EAAE,CAAC,UAAU,CAAC,YAAY,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAErD,MAAM,QAAQ,GAAG,MAAM,EAAE,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC;QACjD,MAAM,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,WAAW,EAAE,CAAC;QACvC,MAAM,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;QACvC,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAC,WAAW,EAAE,CAAC;QACzC,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAC,WAAW,EAAE,CAAC;QACzC,MAAM,CAAC,QAAQ,CAAC,cAAc,CAAC,MAAM,CAAC,CAAC,OAAO,CAAC,CAAC,6CAA6C,CAAC,CAAC,CAAC;QAChG,MAAM,CAAC,QAAQ,CAAC,cAAc,CAAC,QAAQ,CAAC,CAAC,OAAO,CAAC,CAAC,oCAAoC,CAAC,CAAC,CAAC;QACzF,MAAM,CAAC,QAAQ,CAAC,cAAc,CAAC,cAAc,CAAC,CAAC,OAAO,CAAC,CAAC,6BAA6B,CAAC,CAAC,CAAC;QACxF,MAAM,CAAC,QAAQ,CAAC,cAAc,CAAC,SAAS,CAAC,CAAC,OAAO,CAAC,CAAC,mCAAmC,CAAC,CAAC,CAAC;IAC3F,CAAC,CAAC,CAAC;IAEH,EAAE,CAAC,gDAAgD,EAAE,KAAK,IAAI,EAAE;QAC9D,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,MAAM,CAAC,gBAAgB,CAAC,CAAC;QAEzD,MAAM,aAAa,CAAC,MAAM,EAAE,QAAQ,EAAE;YACpC,MAAM,EAAE,EAAE,EAAE,QAAQ,EAAE,EAAE,EAAE,cAAc,EAAE,EAAE,EAAE,SAAS,EAAE,EAAE;SAC5D,CAAC,CAAC;QAEH,MAAM,CAAC,MAAM,EAAE,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACtE,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,QAAQ,CAAC,cAAc,EAAE,GAAG,EAAE;IAC5B,EAAE,CAAC,oCAAoC,EAAE,KAAK,IAAI,EAAE;QAClD,MAAM,EAAE,YAAY,EAAE,aAAa,EAAE,GAAG,MAAM,MAAM,CAAC,gBAAgB,CAAC,CAAC;QAEvE,MAAM,aAAa,CAAC,MAAM,EAAE,QAAQ,EAAE;YACpC,MAAM,EAAE,CAAC,gCAAgC,CAAC;YAC1C,QAAQ,EAAE,EAAE;YACZ,cAAc,EAAE,EAAE;YAClB,SAAS,EAAE,EAAE;SACd,CAAC,CAAC;QAEH,MAAM,MAAM,GAAG,MAAM,YAAY,CAAC,MAAM,CAAC,CAAC;QAC1C,MAAM,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC;QAC9B,MAAM,CAAC,MAAO,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;QACtC,MAAM,CAAC,MAAO,CAAC,cAAc,CAAC,MAAM,CAAC,CAAC,OAAO,CAAC,CAAC,gCAAgC,CAAC,CAAC,CAAC;IACpF,CAAC,CAAC,CAAC;IAEH,EAAE,CAAC,2CAA2C,EAAE,KAAK,IAAI,EAAE;QACzD,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,MAAM,CAAC,gBAAgB,CAAC,CAAC;QAExD,MAAM,MAAM,GAAG,MAAM,YAAY,CAAC,MAAM,CAAC,CAAC;QAC1C,MAAM,CAAC,MAAM,CAAC,CAAC,QAAQ,EAAE,CAAC;IAC5B,CAAC,CAAC,CAAC;IAEH,EAAE,CAAC,6CAA6C,EAAE,KAAK,IAAI,EAAE;QAC3D,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,MAAM,CAAC,gBAAgB,CAAC,CAAC;QAExD,MAAM,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAC,CAAC;QAChD,MAAM,EAAE,CAAC,SAAS,CAChB,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,QAAQ,EAAE,eAAe,CAAC,EAC5C,eAAe,CAChB,CAAC;QAEF,MAAM,MAAM,GAAG,MAAM,YAAY,CAAC,MAAM,CAAC,CAAC;QAC1C,MAAM,CAAC,MAAM,CAAC,CAAC,QAAQ,EAAE,CAAC;IAC5B,CAAC,CAAC,CAAC;IAEH,EAAE,CAAC,oDAAoD,EAAE,KAAK,IAAI,EAAE;QAClE,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,MAAM,CAAC,gBAAgB,CAAC,CAAC;QAExD,MAAM,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAC,CAAC;QAChD,MAAM,EAAE,CAAC,SAAS,CAChB,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,QAAQ,EAAE,eAAe,CAAC,EAC5C,EAAE,OAAO,EAAE,GAAG,EAAE,KAAK,EAAE,QAAQ,EAAE,CAClC,CAAC;QAEF,MAAM,MAAM,GAAG,MAAM,YAAY,CAAC,MAAM,CAAC,CAAC;QAC1C,MAAM,CAAC,MAAM,CAAC,CAAC,QAAQ,EAAE,CAAC;IAC5B,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC"}

package/dist/vault/__tests__/upgrade.test.js CHANGED Viewed

@@ -12,9 +12,9 @@ afterEach(async () => {
 describe("scanInstalledAssets", () => {
     it("finds skills, commands, obsidian config, and templates", async () => {
         const { scanInstalledAssets } = await import("../upgrade.js");
-        // Set up vault with infrastructure files
-        await fs.ensureDir(path.join(tmpDir, ".opencode", "skills"));
-        await fs.writeFile(path.join(tmpDir, ".opencode", "skills", "test.md"), "# Skill");
+        // Set up vault with infrastructure files (skills/<name>/SKILL.md layout)
+        await fs.ensureDir(path.join(tmpDir, ".opencode", "skills", "test"));
+        await fs.writeFile(path.join(tmpDir, ".opencode", "skills", "test", "SKILL.md"), "# Skill");
         await fs.ensureDir(path.join(tmpDir, ".opencode", "commands"));
         await fs.writeFile(path.join(tmpDir, ".opencode", "commands", "cmd.md"), "# Cmd");
         await fs.ensureDir(path.join(tmpDir, ".obsidian"));
@@ -22,7 +22,7 @@ describe("scanInstalledAssets", () => {
         await fs.ensureDir(path.join(tmpDir, "Knowledge", "templates"));
         await fs.writeFile(path.join(tmpDir, "Knowledge", "templates", "Daily Note.md"), "# DN");
         const result = await scanInstalledAssets(tmpDir);
-        expect(result.skills).toContain(".opencode/skills/test.md");
+        expect(result.skills).toContain(".opencode/skills/test/SKILL.md");
         expect(result.commands).toContain(".opencode/commands/cmd.md");
         expect(result.obsidianConfig).toContain(".obsidian/core-plugins.json");
         expect(result.templates).toContain("Knowledge/templates/Daily Note.md");
@@ -42,14 +42,14 @@ describe("bootstrapManifest", () => {
         const { readManifest } = await import("../manifest.js");
         await fs.ensureDir(path.join(tmpDir, ".obsidian"));
         await fs.writeFile(path.join(tmpDir, "AGENT.md"), "# Agent");
-        await fs.ensureDir(path.join(tmpDir, ".opencode", "skills"));
-        await fs.writeFile(path.join(tmpDir, ".opencode", "skills", "s.md"), "skill");
+        await fs.ensureDir(path.join(tmpDir, ".opencode", "skills", "s"));
+        await fs.writeFile(path.join(tmpDir, ".opencode", "skills", "s", "SKILL.md"), "skill");
         await bootstrapManifest(tmpDir);
         const manifest = await readManifest(tmpDir);
         expect(manifest).not.toBeNull();
         expect(manifest.version).toBe("0.0.0");
         expect(manifest.preset).toBe("pm-tpm");
-        expect(manifest.infrastructure.skills).toContain(".opencode/skills/s.md");
+        expect(manifest.infrastructure.skills).toContain(".opencode/skills/s/SKILL.md");
     });
     it("accepts preset override", async () => {
         const { bootstrapManifest } = await import("../upgrade.js");
@@ -62,34 +62,33 @@ describe("bootstrapManifest", () => {
 describe("buildUpgradePlan", () => {
     it("marks missing files as add and existing files as update", async () => {
         const { buildUpgradePlan } = await import("../upgrade.js");
-        // Vault has one skill on disk
-        await fs.ensureDir(path.join(tmpDir, ".opencode", "skills"));
-        await fs.writeFile(path.join(tmpDir, ".opencode", "skills", "existing.md"), "old content");
+        // Vault has one skill on disk (new layout)
+        await fs.ensureDir(path.join(tmpDir, ".opencode", "skills", "existing"));
+        await fs.writeFile(path.join(tmpDir, ".opencode", "skills", "existing", "SKILL.md"), "old content");
         const manifest = {
             version: "0.3.0",
             preset: "pm-tpm",
             createdAt: "2026-03-20",
             updatedAt: "2026-03-20",
             infrastructure: {
-                skills: [".opencode/skills/existing.md"],
+                skills: [".opencode/skills/existing/SKILL.md"],
                 commands: [],
                 obsidianConfig: [],
                 templates: [],
             },
         };
-        // Package ships two skills: existing.md and new.md
         const packageAssets = {
             skills: [
-                { relativePath: ".opencode/skills/existing.md", sourcePath: "/fake/existing.md" },
-                { relativePath: ".opencode/skills/new.md", sourcePath: "/fake/new.md" },
+                { relativePath: ".opencode/skills/existing/SKILL.md", sourcePath: "/fake/existing.md" },
+                { relativePath: ".opencode/skills/new/SKILL.md", sourcePath: "/fake/new.md" },
             ],
             commands: [],
             obsidianConfig: [],
             templates: [],
         };
         const plan = buildUpgradePlan(tmpDir, manifest, packageAssets);
-        const addItem = plan.items.find((i) => i.file === ".opencode/skills/new.md");
-        const updateItem = plan.items.find((i) => i.file === ".opencode/skills/existing.md");
+        const addItem = plan.items.find((i) => i.file === ".opencode/skills/new/SKILL.md");
+        const updateItem = plan.items.find((i) => i.file === ".opencode/skills/existing/SKILL.md");
         expect(addItem).toBeDefined();
         expect(addItem.action).toBe("add");
         expect(updateItem).toBeDefined();
@@ -103,7 +102,7 @@ describe("buildUpgradePlan", () => {
             createdAt: "2026-03-20",
             updatedAt: "2026-03-20",
             infrastructure: {
-                skills: [".opencode/skills/removed.md"],
+                skills: [".opencode/skills/removed/SKILL.md"],
                 commands: [],
                 obsidianConfig: [],
                 templates: [],
@@ -116,7 +115,7 @@ describe("buildUpgradePlan", () => {
             templates: [],
         };
         const plan = buildUpgradePlan(tmpDir, manifest, packageAssets);
-        const deprecated = plan.items.find((i) => i.file === ".opencode/skills/removed.md");
+        const deprecated = plan.items.find((i) => i.file === ".opencode/skills/removed/SKILL.md");
         expect(deprecated).toBeDefined();
         expect(deprecated.action).toBe("deprecated");
     });

package/dist/vault/__tests__/upgrade.test.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/vault/create.js CHANGED Viewed

@@ -400,8 +400,11 @@ async function configureOpenCodeProject(vaultPath, installedFiles) {
         const files = await fs.readdir(obsidianSkillsSrc);
         for (const file of files) {
             if (file.endsWith(".md")) {
-                await fs.copy(path.join(obsidianSkillsSrc, file), path.join(skillsDest, file), { overwrite: true });
-                installedFiles.skills.push(`.opencode/skills/${file}`);
+                const skillName = file.replace(/\.md$/, "");
+                const destDir = path.join(skillsDest, skillName);
+                await fs.ensureDir(destDir);
+                await fs.copy(path.join(obsidianSkillsSrc, file), path.join(destDir, "SKILL.md"), { overwrite: true });
+                installedFiles.skills.push(`.opencode/skills/${skillName}/SKILL.md`);
             }
         }
     }

package/dist/vault/create.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/vault/upgrade.js CHANGED Viewed

@@ -12,7 +12,7 @@ const OBSIDIAN_CONFIG_FILES = [
 // ── Scanning ────────────────────────────────────────────────────
 /** Scan vault for installed infrastructure files. Returns relative paths. */
 export async function scanInstalledAssets(vaultPath) {
-    const skills = await scanDir(vaultPath, ".opencode/skills", ".md");
+    const skills = await scanSkillDirs(vaultPath);
     const commands = await scanDir(vaultPath, ".opencode/commands", ".md");
     const templates = await scanDir(vaultPath, "Knowledge/templates", ".md");
     const obsidianConfig = [];
@@ -33,6 +33,23 @@ async function scanDir(vaultPath, relDir, ext) {
         .filter((f) => f.endsWith(ext))
         .map((f) => `${relDir}/${f}`);
 }
+/** Scan skills in the OpenCode skills/<name>/SKILL.md layout. */
+async function scanSkillDirs(vaultPath) {
+    const skillsRoot = path.join(vaultPath, ".opencode", "skills");
+    if (!(await fs.pathExists(skillsRoot)))
+        return [];
+    const results = [];
+    const entries = await fs.readdir(skillsRoot, { withFileTypes: true });
+    for (const entry of entries) {
+        if (entry.isDirectory()) {
+            const skillMd = path.join(skillsRoot, entry.name, "SKILL.md");
+            if (await fs.pathExists(skillMd)) {
+                results.push(`.opencode/skills/${entry.name}/SKILL.md`);
+            }
+        }
+    }
+    return results;
+}
 // ── Bootstrap ───────────────────────────────────────────────────
 const DEFAULT_PRESET = "pm-tpm";
 /** Bootstrap a manifest for vaults created before the manifest existed. */
@@ -109,13 +126,14 @@ function resolvePackageAssets(preset) {
     const commands = [];
     const obsidianConfig = [];
     const templates = [];
-    // 1. Obsidian skills → .opencode/skills/
+    // 1. Obsidian skills → .opencode/skills/<name>/SKILL.md
     const obsidianSkillsDir = path.join(assetsDir, "obsidian-skills");
     if (fs.existsSync(obsidianSkillsDir)) {
         for (const file of fs.readdirSync(obsidianSkillsDir)) {
             if (file.endsWith(".md")) {
+                const skillName = file.replace(/\.md$/, "");
                 skills.push({
-                    relativePath: `.opencode/skills/${file}`,
+                    relativePath: `.opencode/skills/${skillName}/SKILL.md`,
                     sourcePath: path.join(obsidianSkillsDir, file),
                 });
             }

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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@jayjiang/byoao",
-  "version": "0.8.4",
+  "version": "0.9.1",
   "description": "Build Your Own AI OS — Obsidian + AI Agent",
   "type": "module",
   "engines": {

package/src/assets/obsidian-skills/vault-thinking.md ADDED Viewed

@@ -0,0 +1,40 @@
+---
+name: vault-thinking
+description: Guide for recommending BYOAO vault analysis commands to users. Use when the user is reflecting, brainstorming, stuck on an idea, asking about patterns, or could benefit from a vault-powered thinking workflow.
+---
+# Vault Thinking Guide
+This vault has BYOAO thinking commands available. Suggest them when they match the user's intent — don't wait for an exact keyword match.
+## Available Commands
+| Command | What it does | Suggest when |
+|---------|-------------|--------------|
+| `/weave` | Enrich notes with frontmatter, wikilinks, Glossary entries, hub notes | User imports new files, asks to organize, or vault has many unlinked notes |
+| `/trace topic` | Chronological timeline of how an idea evolved | User asks how something developed, wants history, or says "when did I start..." |
+| `/emerge` | Surface hidden patterns, clusters, contradictions across the vault | User asks "what am I missing", wants a big-picture review, or seems stuck |
+| `/connect A B` | Bridge two topics via the vault's link graph | User wonders if two areas are related, or wants cross-domain insight |
+| `/ideas` | Deep scan to generate actionable ideas from vault content | User asks "what should I work on", wants brainstorming, or needs next steps |
+| `/challenge topic` | Pressure-test a belief against the vault's own history | User is making a decision, says "am I wrong", or wants to validate an assumption |
+| `/drift` | Compare stated intentions vs actual behavior over 30-90 days | User asks about follow-through, wonders where time went, or reviews goals |
+| `/diagnose` | Vault health check — orphans, broken links, frontmatter gaps | User notices broken links, asks "what's wrong with my vault", or after heavy editing |
+## When to Proactively Suggest
+- User is **reflecting on a topic** → suggest `/trace` to see how their thinking evolved
+- User is **brainstorming or feels stuck** → suggest `/emerge` or `/ideas`
+- User is **making a decision** → suggest `/challenge` to pressure-test it
+- User is **reviewing goals or progress** → suggest `/drift`
+- User **imported new notes** or mentions disorganization → suggest `/weave`
+- User asks about **connections between topics** → suggest `/connect`
+- User mentions **broken links or vault messiness** → suggest `/diagnose`
+## How to Suggest
+Mention the command naturally in conversation. For example:
+- "You could run `/trace data-mesh` to see how that idea has evolved across your notes."
+- "If you want to pressure-test that assumption, `/challenge` can find counter-evidence in your vault."
+- "After importing those files, `/weave` can add frontmatter and link them to your existing notes."
+Do not run these commands automatically — they read many vault files and can take several minutes. Always let the user decide when to invoke them.

package/src/skills/challenge.md CHANGED Viewed

@@ -15,6 +15,10 @@ obsidian --version
 If this fails, STOP and display the Obsidian CLI availability message (see /weave for the full error text).
+## Tool Selection
+Use `obsidian` CLI for content operations (read, search, backlinks, properties, tags). Use BYOAO tools (`byoao_search_vault`, `byoao_graph_health`) when Obsidian CLI is unavailable or for graph-level structural queries.
 ## Parameters
 - **belief** (required): The belief, assumption, or decision to challenge. Can be a direct statement or a reference to a note.

package/src/skills/connect.md CHANGED Viewed

@@ -15,6 +15,10 @@ obsidian --version
 If this fails, STOP and display the Obsidian CLI availability message (see /weave for the full error text).
+## Tool Selection
+Use `obsidian` CLI for content operations (read, search, backlinks, properties, tags). Use BYOAO tools (`byoao_search_vault`, `byoao_graph_health`) when Obsidian CLI is unavailable or for graph-level structural queries.
 ## Parameters
 - **from** (required): The first topic, concept, domain, or note.

package/src/skills/diagnose.md CHANGED Viewed

@@ -58,7 +58,7 @@ For each issue category, suggest a concrete next action:
 ### Step 5: Update AGENT.md Timestamp
-After fixes are applied (with user consent), append or update a `Last Scanned` line at the bottom of AGENT.md:
+After fixes are applied, **ask the user** before updating AGENT.md. If confirmed, append or update a `Last Scanned` line at the bottom of AGENT.md:
 ```markdown
 ---

package/src/skills/drift.md CHANGED Viewed

@@ -15,6 +15,10 @@ obsidian --version
 If this fails, STOP and display the Obsidian CLI availability message (see /weave for the full error text).
+## Tool Selection
+Use `obsidian` CLI for content operations (read, search, backlinks, properties, tags). Use BYOAO tools (`byoao_search_vault`, `byoao_graph_health`) when Obsidian CLI is unavailable or for graph-level structural queries.
 ## Parameters
 - **period** (optional): Time window to analyze. Default: "30d" (last 30 days). Accepts: "7d", "30d", "60d", "90d".
@@ -23,24 +27,39 @@ If this fails, STOP and display the Obsidian CLI availability message (see /weav
 ## Process
+### Date Range Resolution
+Calculate the cutoff date from the `period` parameter (e.g., "30d" = today minus 30 days). Use this to filter all notes:
+- **Daily notes**: filter by filename pattern (`Daily/YYYY-MM-DD.md`)
+- **Other notes**: filter by frontmatter `date` field
+- Notes without a date: include only if they are in an active project folder or have `status: active`
 ### Step 1: Collect Intentions
-Search for stated intentions, goals, and plans:
+Use a structured, layered approach to find stated intentions:
+**Layer 1 — Structured notes (most reliable):**
+```bash
+obsidian search "type: decision"
+obsidian search "type: plan"
+```
+Read sprint handoffs, project docs, and decision records within the period.
+**Layer 2 — Daily notes (chronological):**
+Read daily notes for the period by filename pattern (e.g., `Daily/2026-03-*.md`). Extract stated priorities, action items, and commitments.
+**Layer 3 — Keyword fallback (for vaults without structured frontmatter):**
+Only if Layers 1-2 produce fewer than 5 intentions:
 ```bash
 obsidian search "goal"
-obsidian search "plan"
-obsidian search "will do"
 obsidian search "next steps"
 obsidian search "TODO"
 obsidian search "priority"
 ```
 Also read:
-- Decision records — what was decided
-- Sprint/project plans — what was committed
-- Daily notes from the start of the period — stated priorities
-- Meeting notes — action items assigned
+- Meeting notes with action items assigned
+- Notes with tags like `#plan`, `#goal`, `#commitment`
 Extract a list of **stated intentions** with dates:
 - "{date}: Planned to {X}" (source: [[Note]])
@@ -88,6 +107,7 @@ Look for systemic patterns, not just individual misses:
 **Energy leaks** — Time going to undocumented work.
 > "Daily notes from weeks 3-5 rarely mention the stated priority. The gap suggests time is going somewhere not reflected in the vault."
+**Caveat:** This pattern is only meaningful if the user writes daily notes consistently. If daily notes are sparse or irregular, the absence of mentions is a documentation gap, not evidence of time spent elsewhere. Note this distinction in the report.
 **Goal abandonment** — Goals that silently disappeared.
 > "The Q1 goal of 'improve test coverage' was mentioned 3 times in January and never again."

package/src/skills/emerge.md CHANGED Viewed

@@ -15,6 +15,10 @@ obsidian --version
 If this fails, STOP and display the Obsidian CLI availability message (see /weave for the full error text).
+## Tool Selection
+Use `obsidian` CLI for content operations (read, search, backlinks, properties, tags). Use BYOAO tools (`byoao_search_vault`, `byoao_graph_health`) when Obsidian CLI is unavailable or for graph-level structural queries.
 ## Parameters
 - **scope** (optional): Limit analysis to a folder, domain, or tag. Default: entire vault.
@@ -23,6 +27,10 @@ If this fails, STOP and display the Obsidian CLI availability message (see /weav
 ## Process
+### Sampling Strategy
+If a domain or search returns more than 30 notes, prioritize: (1) most recent 10, (2) most-linked 10 (highest backlink count), (3) notes with `status: active`. Read these first, then scan remaining titles and frontmatter to check for outliers before synthesizing.
 ### Step 1: Map the Vault
 Build a structural picture:

package/src/skills/ideas.md CHANGED Viewed

@@ -15,6 +15,10 @@ obsidian --version
 If this fails, STOP and display the Obsidian CLI availability message (see /weave for the full error text).
+## Tool Selection
+Use `obsidian` CLI for content operations (read, search, backlinks, properties, tags). Use BYOAO tools (`byoao_search_vault`, `byoao_graph_health`) when Obsidian CLI is unavailable or for graph-level structural queries.
 ## Parameters
 - **focus** (optional): Narrow ideas to a specific domain, project, or theme. Default: scan all domains.
@@ -23,6 +27,10 @@ If this fails, STOP and display the Obsidian CLI availability message (see /weav
 ## Process
+### Sampling Strategy
+If a domain or search returns more than 30 notes, prioritize: (1) most recent 10, (2) most-linked 10 (highest backlink count), (3) notes with `status: active`. Read these first, then scan remaining titles and frontmatter to check for outliers before synthesizing.
 ### Step 1: Map the Vault
 ```bash
@@ -70,6 +78,12 @@ Generate ideas across these categories:
 **Challenge ideas** — Question an assumption the vault takes for granted.
 > "Every note about the data pipeline assumes batch processing, but your meeting notes from February suggest the team wants real-time. Is batch still the right choice?"
+**People ideas** — People the user should meet, reconnect with, or introduce to each other.
+> "[[Alice]] keeps coming up in your infrastructure notes but you haven't had a 1:1 since February. Worth reconnecting."
+**Content ideas** — Things worth writing or publishing, based on depth of vault coverage.
+> "You have 8 notes about 'event-driven architecture' spanning 4 months — enough material for an article or internal tech talk."
 ### Step 5: Validate Each Idea
 For each idea, verify:
@@ -114,6 +128,14 @@ Generated from {N} notes across {M} domains.
 {Brief paragraph on themes across the ideas — are they pointing in the same direction?}
+## Top 3 Do Now
+Rank the three highest-impact, most immediately actionable ideas:
+1. **{Idea title}** — {one-sentence reason this is high-priority}
+2. **{Idea title}** — {reason}
+3. **{Idea title}** — {reason}
 ## Suggested Follow-ups
 - Run `/trace topic="X"` to explore Idea 1 further

package/src/skills/trace.md CHANGED Viewed

@@ -15,6 +15,10 @@ obsidian --version
 If this fails, STOP and display the Obsidian CLI availability message (see /weave for the full error text).
+## Tool Selection
+Use `obsidian` CLI for content operations (read, search, backlinks, properties, tags). Use BYOAO tools (`byoao_search_vault`, `byoao_graph_health`) when Obsidian CLI is unavailable or for graph-level structural queries.
 ## Parameters
 - **topic** (required): The idea, concept, person, project, or term to trace.
@@ -23,6 +27,10 @@ If this fails, STOP and display the Obsidian CLI availability message (see /weav
 ## Process
+### Sampling Strategy
+If a search returns more than 30 notes, prioritize: (1) most recent 10, (2) most-linked 10 (highest backlink count), (3) notes with `status: active`. Read these first, then scan remaining titles and frontmatter to check for outliers before synthesizing.
 ### Step 1: Find All Mentions
 Search for the topic across the vault using multiple strategies:

package/src/skills/weave.md CHANGED Viewed

@@ -47,8 +47,6 @@ When scanning files, skip:
 | `AGENT.md` | BYOAO-managed file |
 | `Knowledge/templates/` | Template files — not user content |
-Also respect `.byoaoignore` if present (same format as `.gitignore`).
 Report skipped non-markdown files at the end: "Skipped N non-markdown files".
 ## Process

package/src/skills/explain.md DELETED Viewed

@@ -1,58 +0,0 @@
----
-name: explain
-description: Explain codebase systems and workflows in clear, non-jargon language, cached in the Obsidian vault. Use when the user asks "how does this system work", "explain the architecture", "what does this service do", or needs a plain-language explanation of any codebase or technical system.
----
-# /explain — System Explainer
-You are a codebase knowledge assistant for knowledge workers. Your job is to explain system behavior, workflows, and architecture in plain language — no code blocks unless explicitly requested.
-## Three-Layer Knowledge Strategy
-System knowledge comes from three sources, in priority order:
-```
-Layer 1: Baseline Overview    — Codebase overview per repo (high-level architecture)
-Layer 2: Live Code Access     — Local repo clone + file read/grep (detailed tracing)
-Layer 3: Knowledge Cache      — Obsidian Vault Systems/ (accumulated explanations)
-```
-### Layer 1: Baseline Overviews
-Engineers generate a codebase overview for each repo (e.g. via `opencode /init` or similar), containing architecture, key paths, conventions, and dependencies. These overviews are stored at:
-```
-.opencode/context/repos/
-  _index.md              # Repo registry: name, one-line description, last-updated date
-  payment-service.md     # Overview of payment-service repo
-  auth-service.md        # Overview of auth-service repo
-  api-gateway.md         # Overview of api-gateway repo
-```
-**Always load the relevant baseline overview first** before reading raw code.
-### Layer 2: Local Repo Clones
-For detailed questions, read the actual code from local clones at `~/repos/`. Use file read + grep + git log to trace specific workflows.
-### Layer 3: Obsidian Knowledge Cache
-Previously generated explanations are cached in `Systems/`. Reuse them when the question matches and the doc is still current.
-## Behavior
-1. **Parse the question** — identify the target system, service, or feature.
-2. **Load baseline overview** — read `.opencode/context/repos/{service}.md`.
-3. **Check Obsidian vault** — search `Systems/` for existing knowledge docs.
-4. **If more detail needed** — read the local repo clone using baseline as guide.
-5. **Staleness detection** — flag discrepancies between baseline and actual code.
-6. **Synthesize a clear explanation** with Mermaid diagrams where helpful.
-7. **Save to Obsidian vault** — create or update a doc in `Systems/`.
-## Output Style
-- Lead with **what the system does** (behavior), not how it's coded
-- Use workflow descriptions: "When X happens, the system does Y, then Z"
-- Include Mermaid diagrams for multi-step flows
-- No code blocks unless explicitly requested
-- Use `[[wikilinks]]` to connect related vault docs