@jaybeeuu/agent-cortex 1.20.0 → 1.37.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (32) hide show
  1. package/.agents/skills/style-versioning/SKILL.md +101 -0
  2. package/.changeset/README.md +8 -0
  3. package/.changeset/config.json +11 -0
  4. package/.github/workflows/ci.yml +39 -0
  5. package/.github/workflows/release.yml +58 -0
  6. package/AGENTS.md +4 -18
  7. package/CHANGELOG.md +77 -5
  8. package/extensions/session-start.ts +1 -1
  9. package/extensions/skill-stats/context-loader.test.ts +1 -1
  10. package/extensions/skill-stats/node_modules/.bin/pi +21 -0
  11. package/extensions/skill-stats/node_modules/.bin/tsc +21 -0
  12. package/extensions/skill-stats/node_modules/.bin/tsserver +21 -0
  13. package/extensions/skill-stats/node_modules/.bin/tsx +21 -0
  14. package/package.json +6 -5
  15. package/plugin.json +1 -1
  16. package/pnpm-workspace.yaml +1 -0
  17. package/scripts/publish-release.sh +32 -0
  18. package/scripts/sync-plugin-version.sh +17 -0
  19. package/.beads/README.md +0 -81
  20. package/.beads/config.yaml +0 -1
  21. package/.beads/issues.jsonl +0 -236
  22. package/.beads/metadata.json +0 -7
  23. package/.github/workflows/publish.yml +0 -36
  24. package/docs/ideas/auto-model-selection.md +0 -75
  25. package/docs/ideas/improve-pi-system-prompt.md +0 -34
  26. package/docs/ideas/model-selector.md +0 -40
  27. package/docs/ideas/pi-task-memory.md +0 -34
  28. package/docs/ideas/qa-extension.md +0 -43
  29. package/skills/workflow/using-agent-skills/SKILL.md +0 -109
  30. package/skills/workflow/using-agent-skills/scripts/validate-skill-structure.test.ts +0 -73
  31. /package/extensions/{context-loader.md → lib/context-loader.md} +0 -0
  32. /package/extensions/{context-loader.ts → lib/context-loader.ts} +0 -0
package/.beads/issues.jsonl DELETED
@@ -1,236 +0,0 @@
1
- {"_type":"issue","id":"agnt-ctx-b7ik.5","title":"[agnt-ctx-b7ik] PR Review and Merge","description":"Human review gate: review and merge the agent PR into the feature branch before closing this feature.","status":"in_progress","priority":0,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-11T07:13:28Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-12T05:29:06Z","started_at":"2026-07-12T05:29:06Z","labels":["implementation-type:afk","implementation-type:hitl","lifecycle:feature-pr","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-b7ik.5","depends_on_id":"agnt-ctx-b7ik","type":"parent-child","created_at":"2026-07-11T08:13:27Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-b7ik.5","depends_on_id":"agnt-ctx-b7ik.4","type":"blocks","created_at":"2026-07-11T08:13:30Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
2
- {"_type":"issue","id":"agnt-ctx-0mxh.5","title":"[agnt-ctx-0mxh] PR Review and Merge","description":"Human review gate: review and merge the agent PR into the feature branch before closing this feature.","status":"in_progress","priority":0,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-11T07:12:56Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-12T05:29:12Z","started_at":"2026-07-12T05:29:12Z","labels":["implementation-type:afk","implementation-type:hitl","lifecycle:feature-pr","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-0mxh.5","depends_on_id":"agnt-ctx-0mxh","type":"parent-child","created_at":"2026-07-11T08:12:55Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-0mxh.5","depends_on_id":"agnt-ctx-0mxh.4","type":"blocks","created_at":"2026-07-11T08:12:57Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
3
- {"_type":"issue","id":"agnt-ctx-ohle","title":"Split ralph.agent.md into composable format","description":"Take the current agents/ralph.agent.md and split it into:\\n- agents/ralph/agent.md (shared body: intro, branching model, initialization, dispatch logic, stage rules, constraints)\\n- agents/ralph/pi/frontmatter.json (PI tool names, description)\\n- agents/ralph/pi/polling.md (PI active polling loop using read_agent)\\n- agents/ralph/copilot/frontmatter.json (same as PI for now)\\n- agents/ralph/copilot/polling.md (same as PI)\\n- agents/ralph/claude/frontmatter.json (Claude tool names)\\n- agents/ralph/claude/polling.md (Claude event-driven — Task returns inline, no polling)\\n\\nVerify the split produces equivalent output when composed.","status":"open","priority":0,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-11T06:59:33Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-11T06:59:33Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-ohle","depends_on_id":"agnt-ctx-0mxh","type":"blocks","created_at":"2026-07-11T07:59:41Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":3,"comment_count":0}
4
- {"_type":"issue","id":"agnt-ctx-0mxh","title":"Define agent directory format (file layout, frontmatter schema, composition rules)","description":"Design the canonical format for the new composable agent directories.\\n\\nDecisions to make:\\n- agent.md: what goes in the shared body? (everything that's harness-agnostic: branching model, stage pipeline, bead lifecycle)\\n- frontmatter.json: schema (name, description, tools array, any harness-specific metadata)\\n- Section files: how are harness-specific sections included? (polling.md for ralph, but other agents might need different overrides)\\n- Token format: exact syntax for {{TOOL:name}} and {{PATH:name}}\\n- How to handle agents that have no per-harness differences (plan, ralph-plan, strategy — just different frontmatter)\\n\\nProduce a short ADR or doc in agents/README.md recording the decisions.","status":"in_progress","priority":0,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-11T06:59:31Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-11T07:15:14Z","started_at":"2026-07-11T07:01:52Z","labels":["implementation-type:afk","workflow:ralph"],"dependency_count":0,"dependent_count":3,"comment_count":0}
5
- {"_type":"issue","id":"agnt-ctx-b7ik","title":"Create agent-cortex CLI entrypoint (bin/agent-cortex.mjs)","description":"Create the CLI entrypoint that dispatches to harness-specific installers.\\n\\nInterface:\\n agent-cortex install \u003cpi|claude|copilot\u003e [--dry-run] [--output \u003cdir\u003e]\\n agent-cortex update \u003charness\u003e (re-generate after source changes)\\n agent-cortex list (show available agents and their harnesses)\\n\\nUse TypeScript compiled to .mjs, or plain .mjs if simple enough.","status":"in_progress","priority":0,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-10T22:27:48Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-11T07:15:15Z","started_at":"2026-07-11T07:15:15Z","labels":["implementation-type:afk","workflow:ralph"],"dependency_count":0,"dependent_count":4,"comment_count":0}
6
- {"_type":"issue","id":"agnt-ctx-9s4m","title":"Create pi installer (agent-cortex install pi)","description":"Build the PI harness installer in bin/installers/pi.mjs.\\n\\nResponsibilities:\\n- Read token-map.json and agent source files\\n- Compose each agent from shared body + pi/ frontmatter + pi/ sections\\n- Substitute {{TOOL:...}} and {{PATH:...}} tokens\\n- Output to ~/.pi/agent/agents/\u003cname\u003e.agent.md\\n- Handle skill token substitution\\n\\nIntegrates with bin/agent-cortex.mjs entrypoint.","status":"open","priority":0,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-10T22:27:33Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-10T22:27:33Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-9s4m","depends_on_id":"agnt-ctx-0o9p","type":"blocks","created_at":"2026-07-10T23:27:56Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-9s4m","depends_on_id":"agnt-ctx-1odb","type":"blocks","created_at":"2026-07-10T23:27:55Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-9s4m","depends_on_id":"agnt-ctx-b7ik","type":"blocks","created_at":"2026-07-10T23:27:57Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":3,"dependent_count":4,"comment_count":0}
7
- {"_type":"issue","id":"agnt-ctx-0o9p","title":"Restructure ralph agent into composable directory format","description":"Move agents/ralph.agent.md into agents/ralph/agent.md (shared body) with per-harness subdirectories pi/, claude/, copilot/ each containing frontmatter.json and any harness-specific sections (like polling.md).\\n\\nThis is the first agent to migrate — proves the pattern.\\n\\nAcceptance:\\n- agents/ralph.agent.md split into agents/ralph/agent.md + harness files\\n- ralph plan/ralph-plan/strategy agents also migrated\\n- Original .agent.md files removed (replaced by generated output)","status":"open","priority":0,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-10T22:27:32Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-10T22:27:32Z","dependencies":[{"issue_id":"agnt-ctx-0o9p","depends_on_id":"agnt-ctx-0mxh","type":"blocks","created_at":"2026-07-11T07:59:47Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-0o9p","depends_on_id":"agnt-ctx-1odb","type":"blocks","created_at":"2026-07-10T23:27:54Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-0o9p","depends_on_id":"agnt-ctx-hnb9","type":"blocks","created_at":"2026-07-11T07:59:51Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-0o9p","depends_on_id":"agnt-ctx-ohle","type":"blocks","created_at":"2026-07-11T07:59:48Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-0o9p","depends_on_id":"agnt-ctx-tqlv","type":"blocks","created_at":"2026-07-11T07:59:50Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":5,"dependent_count":3,"comment_count":0}
8
- {"_type":"issue","id":"agnt-ctx-ltt4","title":"Make PI subagent system event-driven (wait_for_agents tool)","description":"Replace the polling-based detection model (read_agent + sleep 30) with a blocking wait_for_agents tool, mirroring Claude's event-driven Task tool.\\n\\nProblem: The current task tool is fire-and-forget — it returns an agentId immediately and requires the LLM to poll with read_agent + sleep 30 to detect completion. This wastes tokens and is fragile.\\n\\nProposed solution: Add a wait_for_agents tool that:\\n- Takes an array of agentIds and an optional timeout\\n- Blocks until at least one agent completes (or timeout)\\n- Returns the result(s) of completed agent(s)\\n- Preserves parallelism — dispatch 5 tasks, then wait_for_agents blocks until any of them finishes\\n\\nralph flow becomes:\\n 1. task(promptA) → agentId-a\\n 2. task(promptB) → agentId-b\\n 3. wait_for_agents([a, b]) → blocks until one completes → returns result\\n 4. Process result, dispatch next chore\\n 5. wait_for_agents([remaining]) → repeat until all done\\n\\nNo polling loop, no sleep, no wasted tokens. The LLM just calls a blocking tool and gets results when ready.\\n\\nImplementation considerations:\\n- The existing backgroundRuns Map in subagent/index.ts already tracks completion\\n- wait_for_agents would poll this map internally with short sleeps\\n- Must handle timeout (return STILL RUNNING for timed-out agents)\\n- Must handle abortion via signal\\n- Once this exists, the ralph polling loop section can be replaced with a simple wait_for_agents call","status":"open","priority":1,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-12T04:59:02Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-12T04:59:02Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-ltt4","depends_on_id":"agnt-ctx-9s4m","type":"blocks","created_at":"2026-07-12T05:59:09Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-ltt4","depends_on_id":"agnt-ctx-ohle","type":"blocks","created_at":"2026-07-12T05:59:10Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":2,"dependent_count":0,"comment_count":0}
9
- {"_type":"issue","id":"agnt-ctx-rxje.5","title":"[agnt-ctx-rxje] PR Review and Merge","description":"Human review gate: review and merge the agent PR into the feature branch before closing this feature.","status":"in_progress","priority":1,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-11T07:13:27Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-12T05:29:10Z","started_at":"2026-07-12T05:29:10Z","labels":["implementation-type:afk","implementation-type:hitl","lifecycle:feature-pr","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-rxje.5","depends_on_id":"agnt-ctx-rxje","type":"parent-child","created_at":"2026-07-11T08:13:26Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-rxje.5","depends_on_id":"agnt-ctx-rxje.4","type":"blocks","created_at":"2026-07-11T08:13:30Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
10
- {"_type":"issue","id":"agnt-ctx-hnb9","title":"Update agent-modes extension for new agent source layout","description":"The agent-modes extension currently discovers agents from agents/*.agent.md. After the restructure, agents live in agents/\u003cname\u003e/ directories.\\n\\nUpdate the extension to:\\n- Read from the composable source format (agent.md + harness frontmatter)\\n- Or read from the generated output location (pi/agents/) \\n\\nDecide which and implement.","status":"open","priority":1,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-11T06:59:36Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-11T06:59:36Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-hnb9","depends_on_id":"agnt-ctx-tqlv","type":"blocks","created_at":"2026-07-11T07:59:45Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":1,"comment_count":0}
11
- {"_type":"issue","id":"agnt-ctx-eo3v","title":"Migrate skill files to use {{TOOL:...}} tokens for tool name references","description":"Scan all skills/ SKILL.md files for hardcoded tool names that differ between harnesses (task vs Task, read_agent vs none, etc.) and replace them with {{TOOL:name}} tokens.\\n\\nThis is a prerequisite for the installers to do token substitution on skills.\\n\\nKey files to check:\\n- skills/workflow/ralph/SKILL.md (references task tool)\\n- skills/workflow/ralph/REFERENCE.md\\n- skills/workflow/run-pipeline-stage/SKILL.md\\n- Any other skill that mentions tool names","status":"open","priority":1,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-11T06:59:35Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-11T06:59:35Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-eo3v","depends_on_id":"agnt-ctx-1odb","type":"blocks","created_at":"2026-07-11T07:59:46Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
12
- {"_type":"issue","id":"agnt-ctx-tqlv","title":"Migrate plan, ralph-plan, and strategy agents to composable format","description":"These agents are simpler than ralph — no polling section needed (they don't spawn subagents). They just need:\\n- agents/\u003cname\u003e/agent.md (shared body)\\n- agents/\u003cname\u003e/pi/frontmatter.json\\n- agents/\u003cname\u003e/claude/frontmatter.json\\n- agents/\u003cname\u003e/copilot/frontmatter.json (if keeping Copilot)\\n\\nVerify each produces equivalent output to the current .agent.md when composed with installer.","status":"open","priority":1,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-11T06:59:34Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-11T06:59:34Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-tqlv","depends_on_id":"agnt-ctx-0mxh","type":"blocks","created_at":"2026-07-11T07:59:43Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-tqlv","depends_on_id":"agnt-ctx-ohle","type":"blocks","created_at":"2026-07-11T07:59:44Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":2,"dependent_count":2,"comment_count":0}
13
- {"_type":"issue","id":"agnt-ctx-j33s","title":"Make PI subagents and ralph event-driven (replace polling)","description":"Currently ralph uses active polling (read_agent + sleep 30 loop) to detect subagent completion. This is wasteful and fragile — the LLM burns tokens on repeated checks.\n\nInstead, make the subagent system event-driven.\n\nOption A: PI-side push — The subagent extension fires a callback/event when a background task completes. The LLM gets notified immediately instead of polling. Requires a PI API for push notifications to the LLM.\n\nOption B: Promise-based task tool — The task tool returns a promise that resolves when the subagent completes. The LLM awaits it (synchronous within a tool call). The ralph agent becomes sequential per-agent, or uses a 'wait for any' pattern.\n\nOption C: File-based signalling — Subagent writes completion marker to a file. Ralph uses inotifywait/fswatch instead of polling. Wrapped in a bash tool call that blocks until the marker appears.\n\nExplore which approach fits PI's extension model best. Claude's Task tool is already event-driven (returns inline). The goal is parity: both harnesses should be push-based, not poll-based.","status":"open","priority":1,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-10T22:29:23Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-10T22:29:36Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-j33s","depends_on_id":"agnt-ctx-9s4m","type":"blocks","created_at":"2026-07-10T23:29:26Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
14
- {"_type":"issue","id":"agnt-ctx-nzdz","title":"[epic] Multi-harness agent architecture","description":"Epic tracking the migration from single-source (Copilot CLI only) to multi-harness (PI + Claude + Copilot) agent architecture.\\n\\nKey decisions made:\\n- Agents as composable directories with shared body + per-harness sections\\n- Install-time generation (not build-time)\\n- token-map.json for centralized tool/path mappings\\n- No committed generated output\\n- skills stay single-source with optional token substitution\\n- extensions remain PI-specific; Claude reimplementations go in hooks/","status":"open","priority":1,"issue_type":"feature","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-10T22:27:49Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-10T22:27:49Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-nzdz","depends_on_id":"agnt-ctx-0o9p","type":"blocks","created_at":"2026-07-10T23:28:11Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-nzdz","depends_on_id":"agnt-ctx-1cgb","type":"blocks","created_at":"2026-07-10T23:28:15Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-nzdz","depends_on_id":"agnt-ctx-b7ik","type":"blocks","created_at":"2026-07-10T23:28:12Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-nzdz","depends_on_id":"agnt-ctx-rxje","type":"blocks","created_at":"2026-07-10T23:28:14Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":4,"dependent_count":0,"comment_count":0}
15
- {"_type":"issue","id":"agnt-ctx-rxje","title":"Set up CI and publishing (actions, versioning, npm publish)","description":"Set up GitHub Actions for:\\n- CI: lint, typecheck, test on PR\\n- Publish: npm publish on tag/tag push\\n- Versioning: conventional commits or changesets for automatic version bumps\\n- Install verification: test that 'agent-cortex install pi' produces valid output\\n\\nAlso update package.json with proper bin entrypoint, and document the release process.","status":"in_progress","priority":1,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-10T22:27:46Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-11T07:15:16Z","started_at":"2026-07-11T07:15:16Z","labels":["implementation-type:afk","workflow:ralph"],"dependency_count":0,"dependent_count":1,"comment_count":0}
16
- {"_type":"issue","id":"agnt-ctx-1cgb","title":"Migrate from build-time to install-time generation","description":"Phase out scripts/build-claude-agents.mjs in favor of the agent-cortex CLI installer.\n\nPR #57 established a build-time approach (committed claude/ subtree, build script, agents-native/). This bead tracks replacing that with install-time generation:\n\n1. The build script's logic serves as the reference implementation for what the claude installer needs to generate (agent files, skill symlinks, plugin.json, hooks.json)\n2. The claude/ subtree becomes generated output (gitignored, not committed)\n3. agents-native/ becomes redundant (installer generates from composable source)\n4. CI check switches from 'git diff claude/' to 'installer produces valid output'\n5. Only do this once the pi installer (9s4m) and claude installer (wxep) are working","status":"open","priority":1,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-10T22:27:45Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-12T06:23:44Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-1cgb","depends_on_id":"agnt-ctx-9s4m","type":"blocks","created_at":"2026-07-10T23:28:06Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-1cgb","depends_on_id":"agnt-ctx-wxep","type":"blocks","created_at":"2026-07-10T23:28:08Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":2,"dependent_count":1,"comment_count":0}
17
- {"_type":"issue","id":"agnt-ctx-iyz4","title":"Add token-substitution support in skills","description":"Update the installers to scan skills/ for {{TOOL:...}} tokens and substitute them per harness. This allows skill SKILL.md files to reference tool names in a harness-agnostic way.\\n\\nAcceptance:\\n- Installer handles token substitution in .md files\\n- Token references in existing skills are identified and migrated","status":"open","priority":1,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-10T22:27:36Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-10T22:27:36Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-iyz4","depends_on_id":"agnt-ctx-1odb","type":"blocks","created_at":"2026-07-10T23:28:04Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-iyz4","depends_on_id":"agnt-ctx-9s4m","type":"blocks","created_at":"2026-07-10T23:28:05Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":2,"dependent_count":0,"comment_count":0}
18
- {"_type":"issue","id":"agnt-ctx-wxep","title":"Create claude installer (agent-cortex install claude)","description":"Build the Claude Code harness installer in bin/installers/claude.mjs.\\n\\nResponsibilities:\\n- Same as pi installer but generates Claude-format agents\\n- Output to claude/agents/\u003cname\u003e.md\\n- Symlink skills into claude/skills/\\n- Generate claude/.claude-plugin/plugin.json\\n- Generate claude/hooks.json from hooks/claude/","status":"open","priority":1,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-10T22:27:34Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-10T22:27:34Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-wxep","depends_on_id":"agnt-ctx-0o9p","type":"blocks","created_at":"2026-07-10T23:28:00Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-wxep","depends_on_id":"agnt-ctx-1odb","type":"blocks","created_at":"2026-07-10T23:27:58Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-wxep","depends_on_id":"agnt-ctx-b7ik","type":"blocks","created_at":"2026-07-10T23:28:01Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":3,"dependent_count":2,"comment_count":0}
19
- {"_type":"issue","id":"agnt-ctx-1odb","title":"Design and create token-map.json for multi-harness tool/path mappings","description":"Create a central token-map.json that maps tool names (task, read_agent, bash, etc.) and paths (plugin_root) across pi, claude, and copilot harnesses. This is the foundation for the install-time generation system.\\n\\nKey decisions to make:\\n- Token naming convention ({{TOOL:task}} vs {{tool.task}})\\n- What needs mapping (tools, paths, agent names?)\\n- How to handle null mappings (e.g. read_agent has no Claude equivalent)\\n\\nAlso define the token substitution contract that installers will use.","status":"in_progress","priority":1,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-10T22:27:23Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-11T07:01:53Z","started_at":"2026-07-11T07:01:53Z","labels":["implementation-type:afk","workflow:ralph"],"dependency_count":0,"dependent_count":6,"comment_count":0}
20
- {"_type":"issue","id":"agnt-ctx-bh8a","title":"Remove stale nexus references from skills and README","description":"## Problem\n\nSeveral files still reference \"nexus\" (the old project name \"agent-nexus\" and the \"agent-cortex:nexus\" agent) after the rename to \"agent-cortex\". These references are stale and cause breakage.\n\n## Actionable items\n\n### P0 — Broken skill\n- `skills/improve-codebase-architecture/SKILL.md` lines 16 and 51: spawns `agent-cortex:nexus` sub-agents, which do not exist. The skill cannot work as written. Needs to be rewritten to dispatch exploration using available tools (bash, rg, view, glob) or a real agent.\n\n### P1 — Stale docs\n- `README.md` line 11: structure diagram shows `nexus.agent.md` which no longer exists.\n\n### Nice-to-haves (low impact)\n- `.beads/metadata.json` — `\"dolt_database\": \"agent_nexus\"` (internal db name, no functional impact)\n- `.beads/embeddeddolt/agent_nexus/` — directory name from old repo name\n- `docs/research/skill-improvements-analysis.md` — references `agent-nexus-*` feature IDs\n- `docs/research/gas-city-research.md` — one-off mention \"agent-nexus\"\n- `docs/inspirations.md` — references `agent-nexus-*` feature IDs\n\n## Approach\n\n1. Rewrite `improve-codebase-architecture` to dispatch exploration sub-agents using agents that exist (e.g. `agent-cortex:ralph-plan` or direct tool-based exploration) rather than the non-existent `agent-cortex:nexus`.\n2. Update `README.md` structure diagram.\n3. Optionally clean up the low-impact items if time permits.\n\n## Priority\n\nP1 — the broken skill blocks any use of improve-codebase-architecture, but the user says not to fix in this session.","status":"closed","priority":1,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-06-07T19:59:01Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-09T20:29:38Z","closed_at":"2026-06-09T20:29:38Z","close_reason":"Nexus references removed from content files. improve-codebase-architecture rewritten to use direct tools instead of dead agent-cortex:nexus sub-agent. README.md structure diagram updated. Docs cleaned up.","dependency_count":0,"dependent_count":0,"comment_count":0}
21
- {"_type":"issue","id":"agnt-ctx-3dd4b876","title":"Bump plugin.json minor version","description":"Bump the minor version in plugin.json — new behaviour added (generate-progress.ts script, changed ralph + run-beads workflows).","status":"closed","priority":1,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-04-14T07:21:25Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:39Z","closed_at":"2026-04-14T09:55:58Z","close_reason":"plugin.json minor version bump already satisfied by concurrent bead agent-nexus-79f (0.14.1 → 0.15.0). No file changes required.","labels":["implementation-type:afk","stage:coding","stage:documenting","stage:reviewing","stage:verifying"],"dependencies":[{"issue_id":"agnt-ctx-3dd4b876","depends_on_id":"agnt-ctx-0cfe0fbe","type":"blocks","created_at":"2026-04-14T08:21:28Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-3dd4b876","depends_on_id":"agnt-ctx-87a91ddb","type":"blocks","created_at":"2026-04-14T08:21:27Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":2,"dependent_count":0,"comment_count":0}
22
- {"_type":"issue","id":"agnt-ctx-0cfe0fbe","title":"Update run-beads skill for stage tagging and progress regen","description":"Modify skills/run-beads/SKILL.md:\n\n1. Add `bd tag \u003cid\u003e stage:\u003cstage\u003e` to each stage transition step so the bead tag stays current (beads are source of truth for stage progress).\n\n2. After each stage transition, regenerate the progress file:\n npx tsx skills/run-beads/scripts/generate-progress.ts \u003e .ralph-progress.md\n This ensures inline pairing sessions (not using ralph) also update the progress doc.","status":"closed","priority":1,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-04-14T07:21:19Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:49Z","closed_at":"2026-04-14T07:50:27Z","close_reason":"Added Stage Transitions section to SKILL.md: bd tag stage:\u003cstage\u003e + progress regen before each subagent dispatch. Bumped plugin.json to 0.15.0.","labels":["implementation-type:afk"],"dependencies":[{"issue_id":"agnt-ctx-0cfe0fbe","depends_on_id":"agnt-ctx-a61c3309","type":"blocks","created_at":"2026-04-14T08:21:29Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":1,"comment_count":0}
23
- {"_type":"issue","id":"agnt-ctx-87a91ddb","title":"Update ralph.agent.md for new progress format","description":"Modify agents/ralph.agent.md:\n\n1. Move internal orchestration state out of .ralph-progress.md into .ralph-state.json:\n - Timer shell ID\n - In-flight agent IDs, revision numbers, log line offsets\n Ensure .ralph-state.json is added to .gitignore at startup.\n\n2. Add `bd tag \u003cid\u003e stage:\u003cstage\u003e` call on each stage transition so the bead is the source of truth for stage.\n\n3. Replace the State Document section's markdown template with: call `npx tsx skills/run-beads/scripts/generate-progress.ts \u003e .ralph-progress.md` to regenerate the progress file. Call this on startup and after every agent completion / poll.\n\n4. Update the In-flight table (now in .ralph-state.json) to remove Stage column (read from bead tag instead).","status":"closed","priority":1,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-04-14T07:21:09Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:29Z","closed_at":"2026-04-14T07:52:15Z","close_reason":"ralph.agent.md updated: internal state moved to .ralph-state.json, progress file is now script-generated only, bd tag stage:\u003cstage\u003e added on each dispatch. Bumped plugin.json to 0.16.0.","labels":["implementation-type:afk"],"dependencies":[{"issue_id":"agnt-ctx-87a91ddb","depends_on_id":"agnt-ctx-a61c3309","type":"blocks","created_at":"2026-04-14T08:21:29Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":1,"comment_count":0}
24
- {"_type":"issue","id":"agnt-ctx-a61c3309","title":"Write generate-progress.ts script","description":"Create skills/run-beads/scripts/generate-progress.ts in TypeScript (run with npx tsx). Outputs to stdout.\n\nData layer: fetch all beads via `bd list` and `bd show` — reads status, labels (implementation-type:afk/hitl), stage tag (stage:X), epic membership, and dependency edges.\n\nGraph model:\n- Status badge = {top-level}{classification}{sub-status} e.g. ▶️🤖🔨\n - top-level: ▶️ in-progress · ⏳ waiting · 🔒 blocked · ✅ done · ❌ failed\n - classification: 🤖 AFK · 🙋 HITL\n - sub-status (in-progress only): 🔨 coding · 👁 reviewing · 🔧 fixing · 📝 documenting\n- Mermaid graph TD with epic subgraph wrappers\n- Dynamic depth cutoff: \u003e5 nodes at a level → summary node \"+N more (X 🤖, Y 🙋)\"\n- Orphaned blocked beads (blocked with no unresolved blocking deps) → separate callout section\n- All incomplete beads in scope, rooted at unblocked ones\n\nSections to render:\n1. Mermaid dependency graph\n2. Unified active work table: Code | Title | Status | Blocked by (code + badge per blocker)\n3. Completed section: Code | Title | one-line summary\n\nSeparate data-fetch layer from renderer so format can be swapped later.\nCLI arg: --workspace \u003cpath\u003e (default: cwd)","status":"closed","priority":1,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-04-14T07:20:44Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:29Z","closed_at":"2026-04-14T07:45:13Z","close_reason":"generate-progress.ts implemented with 56 passing tests. Mermaid graph + active work table + completed section + orphaned blocked callout. Epic subgraphs, BFS depth cutoff, status badges all working.","labels":["implementation-type:afk"],"dependency_count":0,"dependent_count":2,"comment_count":0}
25
- {"_type":"issue","id":"agnt-ctx-24381f84.6","title":"[agnt-ctx-24381f84] PR Review and Merge","description":"Human review gate: review and merge the agent PR into the feature branch before closing this feature.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-11T07:14:42Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-11T07:14:42Z","labels":["implementation-type:afk","implementation-type:hitl","lifecycle:feature-pr","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-24381f84.6","depends_on_id":"agnt-ctx-24381f84","type":"parent-child","created_at":"2026-07-11T08:14:42Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-24381f84.6","depends_on_id":"agnt-ctx-24381f84.5","type":"blocks","created_at":"2026-07-11T08:14:43Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
26
- {"_type":"issue","id":"agnt-ctx-b1e8a6cb.6","title":"[agnt-ctx-b1e8a6cb] PR Review and Merge","description":"Human review gate: review and merge the agent PR into the feature branch before closing this feature.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-11T07:14:31Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-11T07:14:31Z","labels":["implementation-type:afk","implementation-type:hitl","lifecycle:feature-pr","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-b1e8a6cb.6","depends_on_id":"agnt-ctx-b1e8a6cb","type":"parent-child","created_at":"2026-07-11T08:14:30Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-b1e8a6cb.6","depends_on_id":"agnt-ctx-b1e8a6cb.5","type":"blocks","created_at":"2026-07-11T08:14:34Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
27
- {"_type":"issue","id":"agnt-ctx-d879541b.6","title":"[agnt-ctx-d879541b] PR Review and Merge","description":"Human review gate: review and merge the agent PR into the feature branch before closing this feature.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-11T07:14:26Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-11T07:14:26Z","labels":["implementation-type:afk","implementation-type:hitl","lifecycle:feature-pr","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-d879541b.6","depends_on_id":"agnt-ctx-d879541b","type":"parent-child","created_at":"2026-07-11T08:14:26Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-d879541b.6","depends_on_id":"agnt-ctx-d879541b.5","type":"blocks","created_at":"2026-07-11T08:14:30Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
28
- {"_type":"issue","id":"agnt-ctx-e02b63ec.6","title":"[agnt-ctx-e02b63ec] PR Review and Merge","description":"Human review gate: review and merge the agent PR into the feature branch before closing this feature.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-11T07:14:22Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-11T07:14:22Z","labels":["implementation-type:afk","implementation-type:hitl","lifecycle:feature-pr","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-e02b63ec.6","depends_on_id":"agnt-ctx-e02b63ec","type":"parent-child","created_at":"2026-07-11T08:14:21Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-e02b63ec.6","depends_on_id":"agnt-ctx-e02b63ec.5","type":"blocks","created_at":"2026-07-11T08:14:28Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
29
- {"_type":"issue","id":"agnt-ctx-udq3","title":"Port relevant extensions to Claude hooks","description":"Audit existing extensions/ and identify which have Claude equivalents:\\n- agent-modes → Claude agent mode switching (maybe via CLAUDE.md)\\n- session-start → Claude SessionStart hooks\\n- agent-cortex/auto-name.ts, notify, skill-stats → evaluate\\n\\nImplement Claude hooks in hooks/claude/ where appropriate.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-10T22:27:47Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-10T22:27:47Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-udq3","depends_on_id":"agnt-ctx-wxep","type":"blocks","created_at":"2026-07-10T23:28:09Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
30
- {"_type":"issue","id":"agnt-ctx-7bxi.2","title":"PI package scaffold + extension skeleton","description":"Create package.json with PI manifest, extensions/subagent/ directory structure, minimal index.ts registering the subagent tool skeleton (agent + stage modes), and agents.ts with agent discovery. Wire it up so 'pi install .' discovers the extension and skills. See .agent-cortex/working-docs/ralph-pi-subagent-plan.md for details.","status":"closed","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-06-01T21:55:25Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-01T22:04:21Z","started_at":"2026-06-01T22:01:12Z","closed_at":"2026-06-01T22:04:21Z","close_reason":"Closed","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-7bxi.2","depends_on_id":"agnt-ctx-7bxi","type":"parent-child","created_at":"2026-06-01T22:55:25Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":1,"comment_count":0}
31
- {"_type":"issue","id":"agnt-ctx-7bxi.3","title":"Copilot compatibility + documentation","description":"Verify backwards compatibility with Copilot CLI. Bump plugin.json version, add CHANGELOG entry, update README.md with PI install instructions alongside existing Copilot CLI setup docs. See .agent-cortex/working-docs/ralph-pi-subagent-plan.md for details.","status":"closed","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-06-01T21:55:25Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-04T21:58:11Z","started_at":"2026-06-04T21:52:47Z","closed_at":"2026-06-04T21:58:11Z","close_reason":"Commit 9470852: docs/Copilot compatibility + documentation — README updated, version bumped, CHANGELOG added","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-7bxi.3","depends_on_id":"agnt-ctx-7bxi","type":"parent-child","created_at":"2026-06-01T22:55:24Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-7bxi.3","depends_on_id":"agnt-ctx-7bxi.4","type":"blocks","created_at":"2026-06-01T22:55:36Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
32
- {"_type":"issue","id":"agnt-ctx-7bxi.4","title":"Ralph skill rewrite (subagent dispatch)","description":"Rewrite skills/ralph/SKILL.md so pipeline stages are dispatched via the subagent tool instead of executed inline. Sequencing logic, branching model, PR gates, worktree management, and bead lifecycle stay the same — only per-stage execution changes. See .agent-cortex/working-docs/ralph-pi-subagent-plan.md for details.","status":"closed","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-06-01T21:55:25Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-04T21:52:23Z","started_at":"2026-06-04T21:42:27Z","closed_at":"2026-06-04T21:52:23Z","close_reason":"PR #27 merged into feature/pi-ralph-scaffold","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-7bxi.4","depends_on_id":"agnt-ctx-7bxi","type":"parent-child","created_at":"2026-06-01T22:55:25Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-7bxi.4","depends_on_id":"agnt-ctx-7bxi.1","type":"blocks","created_at":"2026-06-01T22:55:35Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":1,"comment_count":0}
33
- {"_type":"issue","id":"agnt-ctx-7bxi.1","title":"Stage config + prompt composition","description":"Create skills/run-beads/stages.json with entries for all seven pipeline stages (model-pi, tools, description). Implement prompt-composition logic in the extension: when subagent is called with stage, look up config, read promptPaths files, concatenate playbook + task, write to temp file, spawn pi subprocess with correct model and tools. See .agent-cortex/working-docs/ralph-pi-subagent-plan.md for details.","status":"closed","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-06-01T21:55:24Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-04T21:15:37Z","started_at":"2026-06-04T21:13:48Z","closed_at":"2026-06-04T21:15:37Z","close_reason":"Created skills/run-beads/stages.json with all 7 pipeline stages, added promptPaths parameter support to subagent extension, fixed findPackageRoot to find outer PI package manifest, all 30 tests passing","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-7bxi.1","depends_on_id":"agnt-ctx-7bxi","type":"parent-child","created_at":"2026-06-01T22:55:23Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-7bxi.1","depends_on_id":"agnt-ctx-7bxi.2","type":"blocks","created_at":"2026-06-01T22:55:34Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":1,"comment_count":0}
34
- {"_type":"issue","id":"agnt-ctx-7bxi","title":"Ralph PI subagent pipeline","description":"Make agent-cortex compatible with both PI Agent and Copilot CLI from a single source of truth. Ralph becomes a PI skill that dispatches pipeline stages to isolated subagents via the subagent extension, keeping the orchestrator's context lean. See .agent-cortex/working-docs/ralph-pi-subagent-plan.md for the full plan.","design":"# PRD/Plan: Ralph PI Subagent Pipeline\n\n## Goal\n\nMake agent-cortex compatible with both PI Agent and Copilot CLI from a single source of truth.\nThe ralph loop — currently a Copilot CLI agent — becomes a PI skill that dispatches pipeline stages\nto isolated subagents, while the existing Copilot CLI usage continues to work unchanged.\n\n## Scope\n\n1. **PI package structure** — agent-cortex becomes installable as a `pi install` package\n2. **Subagent extension** — registers a `subagent` tool that composes playbook + task context\n into a self-contained prompt, then spawns isolated `pi` subprocesses with stage-appropriate\n model and tools\n3. **Stage config** — a JSON file mapping pipeline stages to model, tools, and description\n4. **Ralph skill rewrite** — the ralph skill dispatches stages via the `subagent` tool instead of\n executing inline, keeping the orchestrator's context lean\n5. **Copilot CLI compatibility** — plugin.json, existing agents, and existing skills continue to work\n\n## Design Decisions\n\n### Stage config (not per-stage agent files)\n\nCopilot CLI ralph does not use per-stage agent files. It composes each subagent prompt from the\nstage-runner template (`skills/run-beads/prompts/stage-runner.md`) + the playbook content and\ndispatches to a generic background task. Per-stage agent definition files would be a new\nabstraction that only PI uses — not worth adding.\n\nInstead, a **stage config file** maps stage keys to the metadata needed by the extension:\n\n```json\n{\n \"coding\": {\n \"description\": \"Implement features via TDD vertical slices\",\n \"model-pi\": \"claude-sonnet-4-5\",\n \"tools\": [\"read\", \"bash\", \"edit\", \"write\", \"grep\", \"find\", \"ls\"]\n },\n \"verifying\": {\n \"description\": \"Run test/lint/check commands and report results\",\n \"model-pi\": \"claude-haiku-4-5\",\n \"tools\": [\"read\", \"bash\", \"grep\", \"find\", \"ls\"]\n },\n ...\n}\n```\n\nThis file lives at `skills/run-beads/stages.json` — alongside the playbooks and stage-runner\nprompt that define the actual stage behaviour. The extension reads it at invocation time to\ndetermine model and tool restrictions.\n\nFuture refinement: if Copilot CLI ever gains per-stage agent files, these could be generated\nfrom the JSON config so the same data powers both harnesses.\n\n### Prompt composition (extension-owned)\n\nThe `subagent` tool receives:\n- `stage`: stage key (e.g. `\"coding\"`) — extension looks up model/tools in `stages.json`\n- `promptPaths`: playbook paths to prepend — extension reads them\n- `task`: bead-specific context string\n\nThe extension:\n1. Looks up the stage key in `stages.json` for model and tools\n2. Reads the playbook(s) from `promptPaths`\n3. Concatenates: playbook content + task text\n4. Writes to a temp file via `withFileMutationQueue`\n5. Spawns `pi -p --no-session --model \u003cmodel\u003e --tools \u003ctools\u003e --append-system-prompt \u003ctmpfile\u003e`\n\nThe orchestrator (ralph skill) never sees the playbook content in its context window — only\npath strings and the bead-specific task.\n\n### Model selection\n\n- `model-pi` in `stages.json` → used by extension when spawning the subprocess\n- If absent, the parent session model is used (no fallback chain needed since there's no `model`\n field — that's a Copilot CLI agent concept)\n\n### Subagent tool schema\n\nThe `subagent` tool accepts either `agent` (for user-facing agents like ralph or strategy that\nhave `.agent.md` files) or `stage` (for pipeline stages that use the JSON config). This lets it\nserve both use cases:\n\n```typescript\n// Stage mode (pipeline stages):\nsubagent({\n stage: \"coding\",\n promptPaths: [\"skills/run-beads/playbooks/coding.md\"],\n task: \"\u003cbead-specific context\u003e\"\n})\n\n// Agent mode (user-facing agents, Copilot compat):\nsubagent({\n agent: \"strategy\",\n task: \"Research the auth landscape\"\n})\n```\n\nAgent mode discovers and loads `.agent.md` files (existing PI example behaviour). Stage mode\nreads `stages.json` for model/tools and composes the prompt from playbooks + task.\n\n### Agent discovery (user-facing agents only)\n\nThe existing agent-discovery mechanism in the PI subagent example scans `~/.pi/agent/agents/`\nand `.pi/agents/` for `.agent.md` files. This is unchanged. The repo-root `agents/` dir\n(ralph.agent.md, ralph-plan.agent.md, strategy.agent.md) remains the single source for both\nharnesses — accessible to Copilot CLI via `plugin.json` and to PI via the extension scanning\nthose standard agent directories.\n\nBroader automatic agent discovery from any installed PI package is deferred — recorded as a low-pri\nidea in `docs/ideas/autodiscover-agents-from-pi-packages/`.\n\n### PR #21 relationship\n\nSet aside entirely. The sequential inline ralph skill on that branch is not used for inspiration\nor foundation. This is a fresh design.\n\n### Subagent vs inline execution in the ralph skill\n\nThe ralph skill retains its existing sequential bead-processing loop (classify, branch, dispatch\nstages, await completion, advance bead). The change is at the stage-dispatch level:\n\n- **Before**: ralph executes each stage inline using its own tools (read, bash, edit, etc.)\n- **After**: ralph calls the `subagent` tool with the stage key, the bead task context,\n and the playbook path. The extension handles isolation and composition.\n\nThe ralph skill's branching model, PR gates, worktree management, and bead lifecycle all stay\nthe same.\n\n## Files to Create / Change\n\n### NEW\n\n| File | Purpose |\n|---|---|\n| `package.json` | PI package manifest with `pi` key pointing to `extensions/` and `skills/` |\n| `extensions/subagent/index.ts` | Subagent tool extension (based on PI example) |\n| `extensions/subagent/agents.ts` | Agent discovery (user-facing agents only) |\n| `skills/run-beads/stages.json` | Stage config: model, tools, description per stage |\n\n### UPDATE\n\n| File | Change |\n|---|---|\n| `skills/ralph/SKILL.md` | Rewrite stage dispatch to use `subagent` tool |\n| `skills/ralph/REFERENCE.md` | Reflect subagent-based dispatch |\n| `plugin.json` | Version bump |\n| `CHANGELOG.md` | Entry for the change |\n| `README.md` | PI install instructions |\n\n### UNCHANGED (but notable)\n\n| File | Why |\n|---|---|\n| `skills/run-beads/playbooks/*.md` | Already exist, already correct — extension reads them at invocation time |\n| `skills/run-beads/prompts/stage-runner.md` | Still used by Copilot CLI ralph. PI ralph composes prompts via extension instead |\n| `agents/ralph.agent.md` | Copilot CLI ralph agent — unaffected |\n| `agents/ralph-plan.agent.md` | Copilot CLI planning agent — unaffected |\n| `agents/strategy.agent.md` | Copilot CLI strategy agent — unaffected |\n| `plugin.json` agents/skills paths | Unchanged — still points to `agents/` and `skills/` |\n\n## Implementation Plan (Vertical Slices)\n\nThe epic splits into vertically-integrated tasks. Each task delivers a complete, testable slice\nend-to-end.\n\n### Task 1: PI package scaffold + extension skeleton\n\n**What**: Create `package.json` with PI manifest, the `extensions/subagent/` directory structure,\na minimal `index.ts` that registers the `subagent` tool skeleton (both `agent` and `stage` modes),\nand `agents.ts` with agent discovery (user-facing agents from standard locations). Wire it up so\n`pi install .` discovers the extension and skills.\n\n**Files**: `package.json`, `extensions/subagent/index.ts`, `extensions/subagent/agents.ts`\n\n**Acceptance**:\n- `pi install .` from repo root discovers `extensions/` and `skills/`\n- `subagent` tool appears in PI's tool list\n- Calling `subagent({ agent: \"strategy\", task: \"...\" })` loads the strategy agent from\n `~/.pi/agent/agents/strategy.agent.md` (or `.pi/agents/`) and spawns a subprocess\n- Calling `subagent({ stage: \"coding\", task: \"...\" })` returns an appropriate error\n (stages.json doesn't exist yet)\n\n**Blocked by**: Nothing\n\n### Task 2: Stage config + prompt composition\n\n**What**: Create `skills/run-beads/stages.json` with entries for all seven pipeline stages.\nImplement the prompt-composition logic in the extension: when `subagent` is called with `stage`,\nlook up the stage key in `stages.json`, read `promptPaths` files, concatenate playbook + task,\nwrite to temp file, and spawn `pi -p --no-session --model \u003cmodel\u003e --tools \u003ctools\u003e`.\n\n**Files**: `skills/run-beads/stages.json`, `extensions/subagent/index.ts`, `extensions/subagent/agents.ts`\n\n**Acceptance**:\n- `stages.json` has entries for all seven stages with appropriate model and tool choices\n- `subagent({ stage: \"coding\", promptPaths: [\"skills/run-beads/playbooks/coding.md\"], task: \"...\" })`\n spawns a subprocess with the correct model and tools\n- Playbook content is prepended to the task text in the subprocess\n- Neither playbook content nor stage config appear in the calling session's messages\n- Temp files are cleaned up after subprocess exits\n\n**Blocked by**: Task 1\n\n### Task 3: Ralph skill rewrite (subagent dispatch)\n\n**What**: Rewrite `skills/ralph/SKILL.md` so pipeline stages are dispatched via `subagent`\ninstead of executed inline. The ralph skill's sequencing logic (process one bead at a time,\niterate stages, manage branches/PRs) stays the same — only the per-stage execution changes.\n\n**Files**: `skills/ralph/SKILL.md`, `skills/ralph/REFERENCE.md`\n\n**Acceptance**:\n- Ralph processes a bead through its pipeline stages\n- Each stage dispatch is a single `subagent` call with the stage key, `promptPaths` pointing to\n `skills/run-beads/playbooks/\u003cstage\u003e.md`, and the bead-specific task context\n- Ralph's context window contains only the bead context and the subagent call results — not\n playbook content or stage config\n- Branching, PR gates, worktree management, and bead lifecycle unchanged\n\n**Blocked by**: Task 2\n\n### Task 4: Copilot compatibility + documentation\n\n**What**: Verify that all changes are backwards-compatible with Copilot CLI. Update plugin.json\nversion, CHANGELOG, and README with PI install instructions.\n\n**Files**: `plugin.json` (version bump), `README.md`, `CHANGELOG.md`\n\n**Acceptance**:\n- Copilot CLI `gh copilot` shows ralph, ralph-plan, strategy as agents (unchanged)\n- Copilot CLI skills load without error\n- Existing playbooks and stage-runner prompt are still readable by Copilot CLI ralph\n- `README.md` documents both `pi install .` and `gh extension install /path` setup paths\n\n**Blocked by**: Task 3 (needs ralph changes to be in place for final smoke test)\n\n## Non-goals (explicitly out of scope)\n\n- Background subagent parallelism — stages run sequentially for now\n- Poll timers, event loops, or log polling — PI doesn't support background agents\n- Per-stage agent `.agent.md` files — not used by Copilot CLI today; not adding a new abstraction\n- Automatic agent discovery from third-party PI packages — recorded as idea\n- PR #21 content — not used for inspiration or foundation\n\n## Risks\n\n| Risk | Mitigation |\n|---|---|\n| Prompt composition creates temp files that leak | Use `withFileMutationQueue` (already in example) and clean up in `finally` block |\n| Subagent process can't find playbook paths from worktree | Extension resolves paths relative to package root, not process cwd |\n| Stage config gets out of sync with playbooks | stages.json and playbooks live in the same directory (`skills/run-beads/`) — co-located by design |\n","status":"closed","priority":2,"issue_type":"epic","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-06-01T21:55:09Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-04T21:58:21Z","closed_at":"2026-06-04T21:58:21Z","close_reason":"All four sub-tasks complete: PI scaffold, stage config, ralph rewrite, and Copilot compatibility/docs","labels":["implementation-type:afk","workflow:ralph"],"dependency_count":0,"dependent_count":0,"comment_count":0}
35
- {"_type":"issue","id":"agnt-ctx-jht6","title":"Add GitHub MCP server to plugin","description":"Expose a GitHub MCP server through plugin.json so agents can use GitHub tools without relying on built-in OOTB MCP support. Update the changelog and bump the plugin version per repo policy.","status":"closed","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-29T21:07:16Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-29T21:08:26Z","closed_at":"2026-05-29T21:08:26Z","close_reason":"Added GitHub MCP server entry to plugin.json and bumped version/changelog.","dependency_count":0,"dependent_count":0,"comment_count":0}
36
- {"_type":"issue","id":"agnt-ctx-xvyv","title":"[agnt-ctx-24a020f0] Verifying","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-28T18:45:47Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-31T22:12:07Z","closed_at":"2026-05-31T22:12:07Z","close_reason":"Closed","labels":["stage:verifying","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-xvyv","depends_on_id":"agnt-ctx-24a020f0","type":"parent-child","created_at":"2026-05-28T19:46:04Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
37
- {"_type":"issue","id":"agnt-ctx-d2da","title":"[agnt-ctx-24a020f0] Test reviewing","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-28T18:37:13Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:45:38Z","closed_at":"2026-05-28T18:45:38Z","close_reason":"Closed","labels":["stage:test-reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-d2da","depends_on_id":"agnt-ctx-24a020f0","type":"parent-child","created_at":"2026-05-28T19:37:33Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
38
- {"_type":"issue","id":"agnt-ctx-bh8j","title":"[agnt-ctx-24a020f0] Coding","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-28T18:26:55Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:37:06Z","closed_at":"2026-05-28T18:37:06Z","close_reason":"Closed","labels":["implementation-type:afk","stage:coding","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-bh8j","depends_on_id":"agnt-ctx-24a020f0","type":"parent-child","created_at":"2026-05-28T19:27:11Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
39
- {"_type":"issue","id":"agnt-ctx-b5f0da81","title":"[agnt-ctx-24a020f0] Test writing","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-28T18:09:13Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:26:48Z","closed_at":"2026-05-28T18:26:48Z","close_reason":"Closed","labels":["implementation-type:afk","stage:test-writing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-b5f0da81","depends_on_id":"agnt-ctx-24a020f0","type":"parent-child","created_at":"2026-05-28T19:09:31Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
40
- {"_type":"issue","id":"agnt-ctx-24a020f0","title":"Apply PR18 feedback: remove low-value ralph-plan content test","description":"Address PR #18 feedback: remove low-value tests that only read files and assert prompt/document wording.\n\nContext\n- PR #18 adds `skills/run-beads/scripts/ralph-plan-planning-gate.test.ts`.\n- Current test reads `agents/ralph-plan.agent.md` and asserts regex matches on text content.\n- This does not validate executable logic and should not live in this repo per test policy.\n\nScope\n1. Remove `skills/run-beads/scripts/ralph-plan-planning-gate.test.ts`.\n2. Keep tests focused on executable behavior (code paths, data transformations, orchestration behavior).\n3. Ensure no replacement introduces new markdown/prompt phrase-matching tests.\n\nAcceptance criteria\n- `skills/run-beads/scripts/ralph-plan-planning-gate.test.ts` is removed.\n- PR #18 no longer includes file-content assertion tests for agent markdown.\n- Remaining tests in this area validate executable behavior only.","status":"closed","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-28T17:57:23Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-31T22:12:08Z","closed_at":"2026-05-31T22:12:08Z","close_reason":"Closed","labels":["implementation-type:afk","workflow:ralph"],"dependency_count":0,"dependent_count":0,"comment_count":0}
41
- {"_type":"issue","id":"agnt-ctx-329d9424","title":"[agnt-ctx-4f748f30] Remove low-value ralph-plan content assertion test","description":"Address PR feedback that `skills/run-beads/scripts/ralph-plan-planning-gate.test.ts` is low-value text matching and does not test executable logic.\n\nScope\n- Remove or replace file-content assertion tests that only read agent/markdown files and assert wording.\n- Keep focus on executable behavior tests.\n- Ensure this change aligns with the test policy from agnt-ctx-4f748f30 (keep behavior tests, remove prose-only tests).\n\nAcceptance criteria\n- `skills/run-beads/scripts/ralph-plan-planning-gate.test.ts` no longer contains pure file-content phrase assertions.\n- Any replacement tests (if added) validate executable behavior, not prompt/doc wording.\n- PR #19 addresses this reviewer comment explicitly.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T22:02:33Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:47Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-329d9424","depends_on_id":"agnt-ctx-4f748f30","type":"parent-child","created_at":"2026-05-27T23:02:33Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":1,"comment_count":0}
42
- {"_type":"issue","id":"agnt-ctx-6601358a","title":"Fix PR17 failing generate-progress test","description":"Why: PR #17 has failing CI in generate-progress.test.ts around research doc move-vs-copy assertion. What: apply minimal fix on chore/agnt-ctx-f9206f78 so test expectations align with repo behavior and CI passes.","status":"closed","priority":2,"issue_type":"bug","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T22:01:38Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:40Z","closed_at":"2026-05-27T22:03:27Z","close_reason":"Closed","dependency_count":0,"dependent_count":0,"comment_count":0}
43
- {"_type":"issue","id":"agnt-ctx-f098c4bf","title":"[agnt-ctx-4f748f30] Fixing (PR19 rejection feedback)","status":"in_progress","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T21:37:19Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:40Z","labels":["stage:fixing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-f098c4bf","depends_on_id":"agnt-ctx-4f748f30","type":"parent-child","created_at":"2026-05-27T22:37:35Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
44
- {"_type":"issue","id":"agnt-ctx-e555a738","title":"[agnt-ctx-4f748f30] Feature PR gate","notes":"Review and merge feature PR, then close this gate bead. PR: https://github.com/jaybeeuu/agent-cortex/pull/19","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T20:55:22Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:28Z","closed_at":"2026-05-27T21:37:08Z","close_reason":"PR #19 rejected; reopening feature for rework","labels":["implementation-type:hitl","lifecycle:feature-pr","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-e555a738","depends_on_id":"agnt-ctx-4f748f30","type":"parent-child","created_at":"2026-05-27T21:55:33Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
45
- {"_type":"issue","id":"agnt-ctx-7e6dc022","title":"[agnt-ctx-4f748f30] Documenting","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T20:51:46Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:28Z","closed_at":"2026-05-27T20:55:12Z","close_reason":"Closed","labels":["stage:documenting","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-7e6dc022","depends_on_id":"agnt-ctx-4f748f30","type":"parent-child","created_at":"2026-05-27T21:51:54Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
46
- {"_type":"issue","id":"agnt-ctx-4a2a7a26","title":"[agnt-ctx-4f748f30] Reviewing","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T20:48:38Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:28Z","closed_at":"2026-05-27T20:51:43Z","close_reason":"Closed","labels":["stage:reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-4a2a7a26","depends_on_id":"agnt-ctx-4f748f30","type":"parent-child","created_at":"2026-05-27T21:48:46Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
47
- {"_type":"issue","id":"agnt-ctx-80979f3c","title":"[agnt-ctx-4f748f30] Verifying","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T20:46:32Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:29Z","closed_at":"2026-05-27T20:48:34Z","close_reason":"Closed","labels":["stage:verifying","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-80979f3c","depends_on_id":"agnt-ctx-4f748f30","type":"parent-child","created_at":"2026-05-27T21:46:44Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
48
- {"_type":"issue","id":"agnt-ctx-e421289e","title":"[agnt-ctx-4f748f30] Test reviewing","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T20:43:38Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:29Z","closed_at":"2026-05-27T20:46:29Z","close_reason":"Closed","labels":["stage:test-reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-e421289e","depends_on_id":"agnt-ctx-4f748f30","type":"parent-child","created_at":"2026-05-27T21:44:13Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
49
- {"_type":"issue","id":"agnt-ctx-af307bee","title":"[agnt-ctx-4f748f30] Coding","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T20:40:08Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:29Z","closed_at":"2026-05-27T20:43:34Z","close_reason":"Closed","labels":["stage:coding","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-af307bee","depends_on_id":"agnt-ctx-4f748f30","type":"parent-child","created_at":"2026-05-27T21:40:56Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
50
- {"_type":"issue","id":"agnt-ctx-6e95187b","title":"[agnt-ctx-4f748f30] Test writing","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T20:35:13Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:29Z","closed_at":"2026-05-27T20:40:05Z","close_reason":"Closed","labels":["stage:test-writing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-6e95187b","depends_on_id":"agnt-ctx-4f748f30","type":"parent-child","created_at":"2026-05-27T21:35:45Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
51
- {"_type":"issue","id":"agnt-ctx-4f748f30","title":"Apply PR17 feedback: prune low-value tests and enforce .agent-cortex ignore","description":"Apply PR #17 feedback by removing low-value tests and tightening ignore rules.\n\nContext\n- Reviewer note on PR #17: remove unnecessary assertions at https://github.com/jaybeeuu/agent-cortex/pull/17/changes#diff-8d5d1d6183d119362e73081af1e19450a73ce2725571e792616a79f6cd09051dR18-R27\n- Direction: remove tests in this repo unless they validate executable behavior needed for the ralph workflow, or a new workflow for skill/documentation-edit operations.\n- Additional requirement: keep `.agent-cortex/` fully ignored in `.gitignore` (no accidental un-ignore of `.agent-cortex` files).\n\nScope\n1. Audit current tests and classify each as:\n - Keep: validates executable code/workflow behavior (e.g., run-beads/ralph orchestration logic)\n - Remove: text-only or prompt-wording checks that do not validate executable behavior\n2. Remove low-value tests and adjust remaining coverage to focus on behavior.\n3. If we need a dedicated workflow for skill/doc-edit tasks, define/implement it and keep tests focused on that workflow behavior (not markdown phrase matching).\n4. Ensure `.gitignore` keeps all `.agent-cortex/` files ignored.\n\nOut of scope\n- Broad non-related refactors outside test policy/workflow scope.\n\nAcceptance criteria\n- PR #17 feedback item about unnecessary test lines is resolved.\n- Remaining tests are behavior-focused and tied to executable code paths.\n- Any docs/skill-edit workflow tests validate workflow behavior, not static prose text.\n- `.agent-cortex/` remains fully ignored by `.gitignore`.","notes":"Refinement from PR #19 review:\n- `skills/run-beads/scripts/generate-progress.test.ts` is executable-behavior coverage for parser/render/fetch logic and should be retained (or minimally refactored), not blanket-removed.\n- Avoid replacing broad behavioral unit coverage with only a few high-level smoke tests.\n- Remove only low-value text/prose assertion tests (e.g., markdown wording checks against agent prompt files) that do not validate executable behavior.\n- For this bead, classify tests by target:\n 1) executable TS/JS code behavior → keep/improve\n 2) static prompt/doc phrase matching only → remove","status":"open","priority":2,"issue_type":"feature","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T20:29:09Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:47Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-4f748f30","depends_on_id":"agnt-ctx-329d9424","type":"blocks","created_at":"2026-05-27T23:02:57Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
52
- {"_type":"issue","id":"agnt-ctx-127ae08c","title":"[agnt-ctx-f9206f78] Finalize documentation","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T18:30:55Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:28Z","closed_at":"2026-05-27T18:33:59Z","close_reason":"Closed","labels":["stage:documenting","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-127ae08c","depends_on_id":"agnt-ctx-f9206f78","type":"parent-child","created_at":"2026-05-27T19:30:57Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
53
- {"_type":"issue","id":"agnt-ctx-a79f3ef2","title":"[agnt-ctx-f9206f78] Review move-not-copy implementation","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T18:24:57Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:30Z","closed_at":"2026-05-27T18:30:54Z","close_reason":"Closed","labels":["implementation-type:afk","stage:reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-a79f3ef2","depends_on_id":"agnt-ctx-f9206f78","type":"parent-child","created_at":"2026-05-27T19:24:58Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
54
- {"_type":"issue","id":"agnt-ctx-1c7c9b1c","title":"[agnt-ctx-f9206f78] Verify move-not-copy slice","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T18:22:12Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:30Z","closed_at":"2026-05-27T18:24:56Z","close_reason":"Closed","labels":["implementation-type:afk","stage:verifying","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-1c7c9b1c","depends_on_id":"agnt-ctx-f9206f78","type":"parent-child","created_at":"2026-05-27T19:22:13Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
55
- {"_type":"issue","id":"agnt-ctx-f8c9dc78","title":"[agnt-ctx-f9206f78] Validate move-not-copy coverage","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T18:19:09Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:30Z","closed_at":"2026-05-27T18:22:11Z","close_reason":"Closed","labels":["implementation-type:afk","stage:test-reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-f8c9dc78","depends_on_id":"agnt-ctx-f9206f78","type":"parent-child","created_at":"2026-05-27T19:19:11Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
56
- {"_type":"issue","id":"agnt-ctx-1d512257","title":"[agnt-ctx-f9206f78] Implement move-not-copy regression fix","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T18:15:41Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:47Z","closed_at":"2026-05-27T18:19:08Z","close_reason":"Closed","labels":["stage:coding","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-1d512257","depends_on_id":"agnt-ctx-f9206f78","type":"parent-child","created_at":"2026-05-27T19:15:42Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
57
- {"_type":"issue","id":"agnt-ctx-3932ad85","title":"[agnt-ctx-f9206f78] Test: move-vs-copy regression","description":"BLOCKING_ISSUES from test-reviewing:\\n- No test currently asserts that promoted research docs are removed from .agent-cortex/working-docs (true move), so the prior move-vs-copy blocker is not covered.","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T18:08:40Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:30Z","closed_at":"2026-05-27T18:15:39Z","close_reason":"Closed","labels":["implementation-type:afk","stage:test-writing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-3932ad85","depends_on_id":"agnt-ctx-f9206f78","type":"parent-child","created_at":"2026-05-27T19:08:55Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
58
- {"_type":"issue","id":"agnt-ctx-5a91eb38","title":"[agnt-ctx-f9206f78] Validate post-fix coverage","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T12:26:38Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:30Z","closed_at":"2026-05-27T18:08:29Z","close_reason":"Closed","labels":["implementation-type:afk","stage:test-reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-5a91eb38","depends_on_id":"agnt-ctx-f9206f78","type":"parent-child","created_at":"2026-05-27T13:27:03Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
59
- {"_type":"issue","id":"agnt-ctx-14b9f37d","title":"[agnt-ctx-f9206f78] Fix: reviewer feedback","description":"BLOCKING_ISSUES from reviewing:\n- Remove `.agent-cortex/working-docs/skill-design-research.md` and `.agent-cortex/working-docs/skill-improvements-analysis.md` (or otherwise complete a true move) so the “move … → docs/research/” acceptance criterion is satisfied.","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T12:23:52Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:30Z","closed_at":"2026-05-27T12:26:30Z","close_reason":"Closed","labels":["stage:fixing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-14b9f37d","depends_on_id":"agnt-ctx-f9206f78","type":"parent-child","created_at":"2026-05-27T13:24:20Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
60
- {"_type":"issue","id":"agnt-ctx-b8e58c7f","title":"[agnt-ctx-f9206f78] Review implementation quality","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T12:14:00Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:50Z","closed_at":"2026-05-27T12:23:38Z","close_reason":"Closed","labels":["implementation-type:afk","stage:reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-b8e58c7f","depends_on_id":"agnt-ctx-f9206f78","type":"parent-child","created_at":"2026-05-27T13:16:04Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
61
- {"_type":"issue","id":"agnt-ctx-794494af","title":"[agnt-ctx-f9206f78] Verify implementation","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T12:09:36Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:51Z","closed_at":"2026-05-27T12:13:11Z","close_reason":"Closed","labels":["stage:verifying","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-794494af","depends_on_id":"agnt-ctx-f9206f78","type":"parent-child","created_at":"2026-05-27T13:11:00Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
62
- {"_type":"issue","id":"agnt-ctx-b783a0b7","title":"[agnt-ctx-f9206f78] Validate requirement coverage","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T12:04:35Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:55Z","closed_at":"2026-05-27T12:09:24Z","close_reason":"Closed","labels":["stage:test-reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-b783a0b7","depends_on_id":"agnt-ctx-f9206f78","type":"parent-child","created_at":"2026-05-27T13:07:12Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
63
- {"_type":"issue","id":"agnt-ctx-46f5e224","title":"[agnt-ctx-f9206f78] Implement requirement tests slice","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T11:55:44Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:31Z","closed_at":"2026-05-27T12:03:55Z","close_reason":"Closed","labels":["implementation-type:afk","stage:coding","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-46f5e224","depends_on_id":"agnt-ctx-f9206f78","type":"parent-child","created_at":"2026-05-27T12:57:08Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
64
- {"_type":"issue","id":"agnt-ctx-656f2877","title":"[agnt-ctx-f9206f78] Test: uncovered requirements","description":"BLOCKING_ISSUES from test-reviewing:\n- No test asserts each optional section in `docs/skills/skill-anatomy.md` includes all required facets (what it is, example snippet, when to include, when to omit).\n- No test verifies optional-section ordering/placement requirements (e.g., “When NOT to use” adjacent to “When to use”).\n- No test verifies the full annotated SKILL.md template is at the end of `docs/skills/skill-anatomy.md`.\n- No test verifies `skills/write-a-skill/SKILL.md` guidance deltas (line-limit target, voice/tone rules, new front-matter fields, anatomy-doc reference, checklist alignment).\n- No test verifies research-doc promotion/linking contracts (`docs/research/*` and `docs/inspirations.md`).","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T11:48:52Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:31Z","closed_at":"2026-05-27T11:55:28Z","close_reason":"Closed","labels":["stage:test-writing","workflow:ralph"],"dependency_count":0,"dependent_count":0,"comment_count":0}
65
- {"_type":"issue","id":"agnt-ctx-47365959","title":"[agnt-ctx-f9206f78] Validate requirement coverage","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T11:42:54Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:31Z","closed_at":"2026-05-27T11:48:04Z","close_reason":"Closed","labels":["stage:test-reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-47365959","depends_on_id":"agnt-ctx-f9206f78","type":"parent-child","created_at":"2026-05-27T12:44:10Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
66
- {"_type":"issue","id":"agnt-ctx-f5873127","title":"[agnt-ctx-f9206f78] Implement next requirement slice","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T11:35:41Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:31Z","closed_at":"2026-05-27T11:41:52Z","close_reason":"Closed","labels":["stage:coding","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-f5873127","depends_on_id":"agnt-ctx-f9206f78","type":"parent-child","created_at":"2026-05-27T12:36:07Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
67
- {"_type":"issue","id":"agnt-ctx-815c7871","title":"[agnt-ctx-f9206f78] Test: uncovered requirements","description":"BLOCKING_ISSUES from test-reviewing:\n- `docs/skills/skill-anatomy.md` is missing, so the canonical anatomy spec and annotated template acceptance criteria are uncovered.\n- `docs/research/skill-design-research.md` and `docs/research/skill-improvements-analysis.md` are missing, so research promotion criteria are uncovered.\n- `docs/inspirations.md` does not include links to the two required promoted research docs, so linkage coverage is incomplete.\n- `skills/write-a-skill/SKILL.md` still uses the older structure (100-line cap guidance and inline template), and does not clearly reflect the required updated guidance tied to `docs/skills/skill-anatomy.md`.","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T11:30:06Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:31Z","closed_at":"2026-05-27T11:35:31Z","close_reason":"Closed","labels":["stage:test-writing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-815c7871","depends_on_id":"agnt-ctx-f9206f78","type":"parent-child","created_at":"2026-05-27T12:30:30Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
68
- {"_type":"issue","id":"agnt-ctx-0dacd8c8","title":"[agnt-ctx-f9206f78] Review requirement coverage","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T11:25:30Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:51Z","closed_at":"2026-05-27T11:29:56Z","close_reason":"Closed","labels":["implementation-type:afk","stage:test-reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-0dacd8c8","depends_on_id":"agnt-ctx-f9206f78","type":"parent-child","created_at":"2026-05-27T12:25:58Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
69
- {"_type":"issue","id":"agnt-ctx-7f9e62e8","title":"[agnt-ctx-f9206f78] Review requirement coverage","status":"closed","priority":2,"issue_type":"chore","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T11:25:03Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:31Z","closed_at":"2026-05-27T11:32:13Z","close_reason":"superseded by agent-nexus-9qj result and feedback bead agent-nexus-ehu","dependency_count":0,"dependent_count":0,"comment_count":0}
70
- {"_type":"issue","id":"agnt-ctx-f44012d5","title":"Plan: refactor-skill interactive skill","description":"HITL planning gate for agnt-ctx-8b5373e5 (Write refactor-skill interactive skill).\n\n## What 09n intends to build\n\nA new skills/refactor-skill/SKILL.md — an interactive skill that:\n- Reads an existing skill's SKILL.md\n- Interviews the user to decide which anatomy sections apply (examples, when-not-to-use, red flags, verification checklist, common rationalisations)\n- Produces a complete rewrite in one pass to the anatomy template standard\n- Validates against template constraints (length, front-matter, description format)\n\nThis skill gates 15+ individual skill-refactor beads (ubiquitous-language, review-security, tdd, etc.).\n\n## What to discuss in planning\n\n- What is the exact user-facing invocation? Does the user name a skill, or does the skill pick the next one automatically?\n- Is the 'interview' a fixed list of questions (section-by-section) or adaptive (ask only what's uncertain)?\n- How does it handle skills that already partially match the template?\n- Should it write the output directly, or produce a diff/preview for human review first?\n- Does it need a REFERENCE.md or EXAMPLES.md showing before/after examples?\n- Is it worth building a 'dry-run' mode that reports gaps without rewriting?\n- Dependency: agnt-ctx-f9206f78 must be complete first (anatomy template doc is the spec this skill uses).\n\n## Priority\n\nP2 — important but blocked on dal. Plan once dal is done so the anatomy template is available as reference.\n\nClose once approach is agreed and agnt-ctx-8b5373e5 description is updated with the implementation plan.\n","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T11:20:54Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:32Z","closed_at":"2026-05-27T18:10:04Z","close_reason":"Closed","dependency_count":0,"dependent_count":1,"comment_count":0}
71
- {"_type":"issue","id":"agnt-ctx-0384b7af","title":"Plan: refactor-skill interactive skill","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T11:20:39Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:52Z","closed_at":"2026-05-27T20:24:02Z","close_reason":"Duplicate of completed planning gate agent-nexus-a93","labels":["implementation-type:afk"],"dependencies":[{"issue_id":"agnt-ctx-0384b7af","depends_on_id":"agnt-ctx-8b5373e5","type":"parent-child","created_at":"2026-05-27T12:20:39Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
72
- {"_type":"issue","id":"agnt-ctx-39da4c9b","title":"[agnt-ctx-f9206f78] Define skill anatomy doc","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T23:04:30Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:32Z","closed_at":"2026-05-26T23:09:54Z","close_reason":"Closed","labels":["stage:coding","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-39da4c9b","depends_on_id":"agnt-ctx-f9206f78","type":"parent-child","created_at":"2026-05-27T00:04:51Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
73
- {"_type":"issue","id":"agnt-ctx-9403d1cc","title":"[agnt-ctx-7aa65b0a] Remove markdown tests","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T23:03:57Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:32Z","closed_at":"2026-05-26T23:12:31Z","close_reason":"Closed","labels":["stage:coding","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-9403d1cc","depends_on_id":"agnt-ctx-7aa65b0a","type":"parent-child","created_at":"2026-05-27T00:04:12Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
74
- {"_type":"issue","id":"agnt-ctx-47967436","title":"[agnt-ctx-7aa65b0a] Remove markdown tests","status":"closed","priority":2,"issue_type":"chore","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T23:03:46Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:28Z","closed_at":"2026-05-27T06:38:17Z","close_reason":"Closed","dependency_count":0,"dependent_count":0,"comment_count":0}
75
- {"_type":"issue","id":"agnt-ctx-d674bf90","title":"[agnt-ctx-7aa65b0a] Remove markdown tests","status":"closed","priority":2,"issue_type":"chore","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T23:03:38Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:50Z","closed_at":"2026-05-27T06:38:18Z","close_reason":"Closed","dependency_count":0,"dependent_count":0,"comment_count":0}
76
- {"_type":"issue","id":"agnt-ctx-2cb1f4a6","title":"[agnt-ctx-7aa65b0a] Remove markdown tests","status":"closed","priority":2,"issue_type":"chore","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T23:03:27Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:32Z","closed_at":"2026-05-27T06:38:18Z","close_reason":"Closed","dependency_count":0,"dependent_count":0,"comment_count":0}
77
- {"_type":"issue","id":"agnt-ctx-7c837ee1","title":"Refactor obsidian-vault to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/obsidian-vault/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/obsidian-vault/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:12:52Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-09T20:57:39Z","closed_at":"2026-06-09T20:57:39Z","close_reason":"Skill was removed (never used) — nothing to refactor","dependencies":[{"issue_id":"agnt-ctx-7c837ee1","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:12:56Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
78
- {"_type":"issue","id":"agnt-ctx-e588697d","title":"Refactor ralph to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/ralph/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/ralph/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:12:43Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:51Z","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-e588697d","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:12:47Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
79
- {"_type":"issue","id":"agnt-ctx-60ac69de","title":"Refactor run-beads to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/run-beads/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/run-beads/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:12:35Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:32Z","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-60ac69de","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:12:38Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
80
- {"_type":"issue","id":"agnt-ctx-e25318a2","title":"Refactor init-beads to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/init-beads/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/init-beads/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:12:23Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:33Z","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-e25318a2","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:12:27Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
81
- {"_type":"issue","id":"agnt-ctx-8436259c","title":"Refactor create-task to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/create-task/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/create-task/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:12:15Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:48Z","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-8436259c","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:12:19Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
82
- {"_type":"issue","id":"agnt-ctx-94b624cb","title":"Refactor classify-bead to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/classify-bead/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/classify-bead/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:12:07Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:48Z","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-94b624cb","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:12:10Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
83
- {"_type":"issue","id":"agnt-ctx-b2935208","title":"Refactor beads to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/beads/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/beads/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:11:58Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-08T21:33:02Z","closed_at":"2026-06-08T21:33:02Z","close_reason":"Merged in PR #41 — beads refactored to anatomy template (bd-tool + run-pipeline-stage)","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-b2935208","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:12:02Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
84
- {"_type":"issue","id":"agnt-ctx-99541444","title":"Refactor style-tests to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/style-tests/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/style-tests/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:11:46Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-07T11:24:25Z","closed_at":"2026-06-07T11:24:25Z","close_reason":"Merged in PR #35: style-tests refactored to anatomy template","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-99541444","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:11:50Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
85
- {"_type":"issue","id":"agnt-ctx-1f3ce9a9","title":"Refactor style-documentation to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/style-documentation/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/style-documentation/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:11:37Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-06T22:20:09Z","closed_at":"2026-06-06T22:20:09Z","close_reason":"Merged in PR #34: style-documentation refactored to anatomy template","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-1f3ce9a9","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:11:41Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
86
- {"_type":"issue","id":"agnt-ctx-20f432f3","title":"Refactor style-comms to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/style-comms/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/style-comms/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","notes":"PR submitted: https://github.com/jaybeeuu/agent-cortex/pull/31","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:11:29Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-06T21:23:13Z","closed_at":"2026-06-06T21:23:13Z","close_reason":"Merged in PR #31: style-comms refactored to anatomy template","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-20f432f3","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:11:33Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
87
- {"_type":"issue","id":"agnt-ctx-d75c6748","title":"Refactor style-code to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/style-code/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/style-code/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:11:17Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-06T22:08:13Z","closed_at":"2026-06-06T22:08:13Z","close_reason":"Merged in PR #33: style-code refactored to anatomy template","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-d75c6748","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:11:24Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
88
- {"_type":"issue","id":"agnt-ctx-14da8a22","title":"Refactor review-security to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/review-security/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/review-security/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:11:09Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-07T19:52:34Z","closed_at":"2026-06-07T19:52:34Z","close_reason":"Merged in PR #37: review-security refactored to anatomy template","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-14da8a22","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:11:12Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
89
- {"_type":"issue","id":"agnt-ctx-6f40665e","title":"Refactor tdd to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/tdd/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/tdd/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:11:00Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-07T14:57:46Z","closed_at":"2026-06-07T14:57:46Z","close_reason":"Merged in PR #36: tdd refactored to anatomy template","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-6f40665e","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:11:04Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
90
- {"_type":"issue","id":"agnt-ctx-1ed3c2c8","title":"Refactor maintain-agent-docs to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/maintain-agent-docs/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/maintain-agent-docs/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:10:49Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:34Z","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-1ed3c2c8","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:10:53Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
91
- {"_type":"issue","id":"agnt-ctx-c12e75b0","title":"Refactor improve-codebase-architecture to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/improve-codebase-architecture/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/improve-codebase-architecture/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:10:38Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:34Z","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-c12e75b0","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:10:42Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
92
- {"_type":"issue","id":"agnt-ctx-a7b83c56","title":"Refactor plan-to-epics to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/plan-to-epics/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/plan-to-epics/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:10:28Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-07T20:37:58Z","closed_at":"2026-06-07T20:37:58Z","close_reason":"Skill removed — plan-to-epics superseded by new prd-to-tasks skill (v1.16.0)","dependencies":[{"issue_id":"agnt-ctx-a7b83c56","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:10:32Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
93
- {"_type":"issue","id":"agnt-ctx-0a93e2d2","title":"Refactor qa to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/qa/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/qa/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:10:09Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-07T19:53:31Z","closed_at":"2026-06-07T19:53:31Z","close_reason":"QA skill removed entirely — decided to remove rather than refactor. This bead is superseded by the removal.","dependencies":[{"issue_id":"agnt-ctx-0a93e2d2","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:10:20Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
94
- {"_type":"issue","id":"agnt-ctx-fa867693","title":"Refactor hitl-collab to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/hitl-collab/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/hitl-collab/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:09:53Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:50Z","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-fa867693","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:09:57Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
95
- {"_type":"issue","id":"agnt-ctx-803abc2f","title":"Refactor record-idea to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/record-idea/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/record-idea/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:09:44Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:34Z","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-803abc2f","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:09:48Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
96
- {"_type":"issue","id":"agnt-ctx-4465d02f","title":"Refactor write-a-ticket to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/write-a-ticket/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/write-a-ticket/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:09:32Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:49Z","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-4465d02f","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:09:39Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
97
- {"_type":"issue","id":"agnt-ctx-6a5c9c3d","title":"Refactor design-an-interface to anatomy template","description":"Why:\nAll skills are being systematically reviewed and uplifted to the anatomy template standard. The refactor-skill interactive skill will determine which sections apply and what the content should be.\n\nWhat:\nUse the refactor-skill interactive skill to review and rewrite skills/design-an-interface/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags/rationalisations should be. May conclude minimal changes are needed.\n\nAcceptance:\nskills/design-an-interface/SKILL.md has been reviewed against the anatomy template.\nAny applicable sections have been added with skill-specific content.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:09:21Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:35Z","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-6a5c9c3d","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:09:26Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
98
- {"_type":"issue","id":"agnt-ctx-b4a2f515","title":"Refactor request-refactor-plan to anatomy template","description":"Why:\nrequest-refactor-plan is a high-value skill that will significantly benefit from the full anatomy template uplift — adding relevant sections (examples, when-not-to-use, red flags, verification checklist, common rationalisations) in one coherent pass.\n\nWhat:\nUse the refactor-skill interactive skill to rewrite skills/request-refactor-plan/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags should be.\n\nAcceptance:\nskills/request-refactor-plan/SKILL.md conforms to anatomy template.\nAll sections are relevant and specific to this skill — nothing generic.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:06:09Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:47Z","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-b4a2f515","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:07:12Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
99
- {"_type":"issue","id":"agnt-ctx-f41cd887","title":"Refactor prd-to-epics to anatomy template","description":"Why:\nprd-to-epics is a high-value skill that will significantly benefit from the full anatomy template uplift — adding relevant sections (examples, when-not-to-use, red flags, verification checklist, common rationalisations) in one coherent pass.\n\nWhat:\nUse the refactor-skill interactive skill to rewrite skills/prd-to-epics/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags should be.\n\nAcceptance:\nskills/prd-to-epics/SKILL.md conforms to anatomy template.\nAll sections are relevant and specific to this skill — nothing generic.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:06:03Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:49Z","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-f41cd887","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:07:07Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
100
- {"_type":"issue","id":"agnt-ctx-510f4d86","title":"Refactor triage-issue to anatomy template","description":"Why:\ntriage-issue is a high-value skill that will significantly benefit from the full anatomy template uplift — adding relevant sections (examples, when-not-to-use, red flags, verification checklist, common rationalisations) in one coherent pass.\n\nWhat:\nUse the refactor-skill interactive skill to rewrite skills/triage-issue/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags should be.\n\nAcceptance:\nskills/triage-issue/SKILL.md conforms to anatomy template.\nAll sections are relevant and specific to this skill — nothing generic.","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:05:59Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-07T19:53:32Z","closed_at":"2026-06-07T19:53:32Z","close_reason":"Completed in v1.13.0 — triage-issue rewritten to anatomy template with deepened investigation workflow, diagnose.sh script, and ralph-plan integration.","dependencies":[{"issue_id":"agnt-ctx-510f4d86","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:07:03Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
101
- {"_type":"issue","id":"agnt-ctx-9a1a7a32","title":"Refactor ubiquitous-language to anatomy template","description":"Why:\nubiquitous-language is a high-value skill that will significantly benefit from the full anatomy template uplift — adding relevant sections (examples, when-not-to-use, red flags, verification checklist, common rationalisations) in one coherent pass.\n\nWhat:\nUse the refactor-skill interactive skill to rewrite skills/ubiquitous-language/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags should be.\n\nAcceptance:\nskills/ubiquitous-language/SKILL.md conforms to anatomy template.\nAll sections are relevant and specific to this skill — nothing generic.","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:05:55Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-09T20:57:29Z","closed_at":"2026-06-09T20:57:29Z","close_reason":"Skill was removed (superseded by grill-with-docs) — nothing to refactor","dependencies":[{"issue_id":"agnt-ctx-9a1a7a32","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:06:59Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
102
- {"_type":"issue","id":"agnt-ctx-dfd089cb","title":"Refactor epic-to-tasks to anatomy template","description":"Why:\nepic-to-tasks is a high-value skill that will significantly benefit from the full anatomy template uplift — adding relevant sections (examples, when-not-to-use, red flags, verification checklist, common rationalisations) in one coherent pass.\n\nWhat:\nUse the refactor-skill interactive skill to rewrite skills/epic-to-tasks/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags should be.\n\nAcceptance:\nskills/epic-to-tasks/SKILL.md conforms to anatomy template.\nAll sections are relevant and specific to this skill — nothing generic.","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:05:51Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-07T20:37:58Z","closed_at":"2026-06-07T20:37:58Z","close_reason":"Skill removed — epic-to-tasks superseded by new prd-to-tasks skill (v1.16.0)","dependencies":[{"issue_id":"agnt-ctx-dfd089cb","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:06:55Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
103
- {"_type":"issue","id":"agnt-ctx-89df07ca","title":"Refactor technical-direction to anatomy template","description":"Why:\ntechnical-direction is a high-value skill that will significantly benefit from the full anatomy template uplift — adding relevant sections (examples, when-not-to-use, red flags, verification checklist, common rationalisations) in one coherent pass.\n\nWhat:\nUse the refactor-skill interactive skill to rewrite skills/technical-direction/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags should be.\n\nAcceptance:\nskills/technical-direction/SKILL.md conforms to anatomy template.\nAll sections are relevant and specific to this skill — nothing generic.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:05:46Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:36Z","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-89df07ca","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:06:51Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
104
- {"_type":"issue","id":"agnt-ctx-e0091925","title":"Refactor grill-with-docs to anatomy template","description":"Why:\ngrill-with-docs is a high-value skill that will significantly benefit from the full anatomy template uplift — adding relevant sections (examples, when-not-to-use, red flags, verification checklist, common rationalisations) in one coherent pass.\n\nWhat:\nUse the refactor-skill interactive skill to rewrite skills/grill-with-docs/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags should be.\n\nAcceptance:\nskills/grill-with-docs/SKILL.md conforms to anatomy template.\nAll sections are relevant and specific to this skill — nothing generic.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:05:42Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:36Z","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-e0091925","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:06:46Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
105
- {"_type":"issue","id":"agnt-ctx-3f622f1a","title":"Refactor prd-to-plan to anatomy template","description":"Why:\nprd-to-plan is a high-value skill that will significantly benefit from the full anatomy template uplift — adding relevant sections (examples, when-not-to-use, red flags, verification checklist, common rationalisations) in one coherent pass.\n\nWhat:\nUse the refactor-skill interactive skill to rewrite skills/prd-to-plan/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags should be.\n\nAcceptance:\nskills/prd-to-plan/SKILL.md conforms to anatomy template.\nAll sections are relevant and specific to this skill — nothing generic.","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:05:38Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-07T20:37:59Z","closed_at":"2026-06-07T20:37:59Z","close_reason":"Skill removed — prd-to-plan superseded by new prd-to-tasks skill (v1.16.0)","dependencies":[{"issue_id":"agnt-ctx-3f622f1a","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:06:40Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
106
- {"_type":"issue","id":"agnt-ctx-e63e65fc","title":"Refactor write-a-prd to anatomy template","description":"Why:\nwrite-a-prd is a high-value skill that will significantly benefit from the full anatomy template uplift — adding relevant sections (examples, when-not-to-use, red flags, verification checklist, common rationalisations) in one coherent pass.\n\nWhat:\nUse the refactor-skill interactive skill to rewrite skills/write-a-prd/SKILL.md to the anatomy template standard. Decide with the user which sections apply and what the examples/red-flags should be.\n\nAcceptance:\nskills/write-a-prd/SKILL.md conforms to anatomy template.\nAll sections are relevant and specific to this skill — nothing generic.","status":"open","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:05:30Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:36Z","labels":["implementation-type:hitl"],"dependencies":[{"issue_id":"agnt-ctx-e63e65fc","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:06:35Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
107
- {"_type":"issue","id":"agnt-ctx-235db158","title":"Refactor write-a-skill using refactor-skill","description":"Why:\nwrite-a-skill is the canonical entry point for creating new skills. Once the anatomy template and refactor-skill exist, write-a-skill should be the first skill upgraded so all future skills are authored to the new standard.\n\nWhat:\nUse the refactor-skill interactive skill to rewrite skills/write-a-skill/SKILL.md to the anatomy template standard. Ensure the skill embeds or references the template so agents writing new skills follow it.\n\nAcceptance:\nwrite-a-skill/SKILL.md conforms to anatomy template.\nwrite-a-skill instructs agents to follow the anatomy template when creating new skills.","status":"closed","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:05:19Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-05T21:48:50Z","started_at":"2026-06-05T21:44:58Z","closed_at":"2026-06-05T21:48:50Z","close_reason":"PR #30: rewrote write-a-skill to anatomy template using refactor-skill","labels":["implementation-type:afk"],"dependencies":[{"issue_id":"agnt-ctx-235db158","depends_on_id":"agnt-ctx-8b5373e5","type":"blocks","created_at":"2026-05-26T23:06:31Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
108
- {"_type":"issue","id":"agnt-ctx-8b5373e5","title":"Write refactor-skill interactive skill","description":"Why:\nRefactoring existing skills to the new anatomy template requires judgment on which sections apply and what examples/red-flags/rationalisations are relevant — nothing is rote. An interactive skill guides the agent through this decision-making skill-by-skill.\n\nWhat:\nCreate skills/refactor-skill/SKILL.md as an interactive skill that:\n- Reads the existing SKILL.md for a named skill\n- Interviews the user to decide which anatomy sections are relevant (examples, when-not-to-use, red flags, verification checklist, common rationalisations)\n- Produces a complete rewrite of the SKILL.md in one pass to the anatomy template standard\n- Validates the result against the template constraints (length, front-matter, description format)\n\nAcceptance:\nskills/refactor-skill/SKILL.md exists and follows the anatomy template.\nRunning the skill on an existing skill produces a complete upgraded SKILL.md in one pass.","design":"Goal\nBuild `skills/refactor-skill/SKILL.md` as an interactive planning skill that helps refactor existing skills to the anatomy template by comparing the current file to the template, surfacing concrete recommendations, and handing the work off for ralph to implement.\n\nKey decisions\n- The skill always takes a specific target skill name.\n- It judges the target skill primarily by reading the file and comparing it to the template, not by relying on user answers alone.\n- It recommends changes first, then asks the user to review those proposals.\n- It does not edit the target skill itself; it prepares the plan and handoff for ralph.\n- The planning output must be cold-start ready: enough context, references, and decisions for a later session to continue without the original conversation.\n\nOrdered workstreams\n1. Read the anatomy template and the target skill, then classify what is missing or inconsistent.\n2. Turn that analysis into a short set of recommendations grouped by section or concern.\n3. Present the recommendations to the user, capture the approved plan, and create the HITL planning bead structure that hands the work off cleanly.\n4. Validate the workflow against one or two representative skills so the interaction stays practical for the larger refactor wave.\n\nRisks / out-of-scope\n- No automatic rewriting of target skills during the planning phase.\n- No queue-based auto-selection of the next skill; the user names the target.\n- No attempt to refactor the whole skill library in one pass without review.\n\nReferences\n- `.agent-cortex/working-docs/skill-design-research.md`\n- `.agent-cortex/working-docs/skill-improvements-analysis.md`\n","status":"closed","priority":2,"issue_type":"feature","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T22:05:07Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-06-05T21:17:44Z","started_at":"2026-06-05T21:16:50Z","closed_at":"2026-06-05T21:17:44Z","close_reason":"Created skills/refactor-skill/SKILL.md following canonical anatomy template. Interactive skill with gap analysis, user interview for optional sections, one-pass rewrite, and validation. 122 lines, under 150 hard cap. Bumped to 1.7.0.","labels":["implementation-type:afk"],"dependencies":[{"issue_id":"agnt-ctx-8b5373e5","depends_on_id":"agnt-ctx-f44012d5","type":"blocks","created_at":"2026-05-27T12:21:22Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-8b5373e5","depends_on_id":"agnt-ctx-f9206f78","type":"blocks","created_at":"2026-05-26T23:06:27Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":2,"dependent_count":31,"comment_count":0}
109
- {"_type":"issue","id":"agnt-ctx-63081d56","title":"Add concrete examples to skills","description":"Add realistic before/after or input/output examples to skills that currently explain by prose alone. Inspired by addyosmani/agent-skills pattern. Skills in scope: write-a-prd (show a filled PRD template), prd-to-plan (show a good vs bad phase breakdown), grill-with-docs (show a sample grilling exchange). Research basis: few-shot example prompting (Brown et al., GPT-3 2020) consistently outperforms abstract description.","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T21:42:23Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:51Z","closed_at":"2026-05-26T22:07:27Z","dependencies":[{"issue_id":"agnt-ctx-63081d56","depends_on_id":"agnt-ctx-f9206f78","type":"supersedes","created_at":"2026-05-26T23:07:26Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
110
- {"_type":"issue","id":"agnt-ctx-9491f99a","title":"Add Verification checklists to skills","description":"Add a terminal 'Verification' checklist (checkboxes) to skills that currently lack one. Inspired by addyosmani/agent-skills pattern. Skills in scope: write-a-prd, prd-to-plan, style-code. Research basis: structured step decomposition reduces omission errors (Wei et al., chain-of-thought 2022).","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T21:42:16Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:51Z","closed_at":"2026-05-26T22:07:31Z","dependencies":[{"issue_id":"agnt-ctx-9491f99a","depends_on_id":"agnt-ctx-f9206f78","type":"supersedes","created_at":"2026-05-26T23:07:30Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
111
- {"_type":"issue","id":"agnt-ctx-ccadd154","title":"Add 'Red Flags' sections to skills","description":"Add a 'Red Flags' list to skills that enforce practices — concretely naming detectable anti-patterns. Inspired by addyosmani/agent-skills pattern. Skills in scope: tdd, review-security, write-a-prd. Research basis: contrastive examples (positive + negative) improve instruction following; naming failure modes alongside correct behaviour helps models self-correct.","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T21:42:11Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:50Z","closed_at":"2026-05-26T22:07:35Z","dependencies":[{"issue_id":"agnt-ctx-ccadd154","depends_on_id":"agnt-ctx-f9206f78","type":"supersedes","created_at":"2026-05-26T23:07:35Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
112
- {"_type":"issue","id":"agnt-ctx-3f48d154","title":"Add 'When NOT to use' sections to skills","description":"Add explicit 'When NOT to use' scope boundaries to process skills that currently lack them. Inspired by addyosmani/agent-skills pattern. Skills in scope: tdd, write-a-prd, prd-to-plan, review-security, grill-with-docs, technical-direction. Research basis: explicit out-of-scope conditions improve invocation precision (Wang et al., SuperNaturalInstructions 2022).","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T21:42:05Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:37Z","closed_at":"2026-05-26T22:07:39Z","dependencies":[{"issue_id":"agnt-ctx-3f48d154","depends_on_id":"agnt-ctx-f9206f78","type":"supersedes","created_at":"2026-05-26T23:07:39Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
113
- {"_type":"issue","id":"agnt-ctx-fbc11887","title":"Add 'Common Rationalizations' tables to skills","description":"Add a 'Common Rationalizations' table to each skill where agents are likely to rationalise away following the instructions. Inspired by addyosmani/agent-skills pattern. Skills in scope: tdd, write-a-prd, prd-to-plan, style-code, review-security, write-a-skill. Each table debunks the most common excuses for not following the skill, inline in the SKILL.md. Research basis: LLM sycophancy literature — naming rationalisations in the prompt reduces the behaviour.","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T21:42:01Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:54Z","closed_at":"2026-05-26T22:07:43Z","dependencies":[{"issue_id":"agnt-ctx-fbc11887","depends_on_id":"agnt-ctx-f9206f78","type":"supersedes","created_at":"2026-05-26T23:07:43Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
114
- {"_type":"issue","id":"agnt-ctx-f9206f78","title":"Define skill anatomy template doc","description":"Create the canonical skill anatomy document and update write-a-skill to match.\n\n## Background\n\nTwo external skill repos were analysed (addyosmani/agent-skills, mattpocock/skills) and cross-referenced with prompt-engineering research (Anthropic, 26 Principles paper, CoT, LIMA, FLAN, etc.). This bead encodes the distilled, actionable output of that research.\n\nResearch docs:\n- .agent-cortex/working-docs/skill-design-research.md (mattpocock + literature synthesis)\n- .agent-cortex/working-docs/skill-improvements-analysis.md (addyosmani analysis)\n\nThese should be promoted to docs/research/ and linked from docs/inspirations.md as part of this bead.\n\n## What to build\n\n### 1. docs/skills/skill-anatomy.md\n\nThe canonical reference for skill structure. Consumed by write-a-skill and the planned refactor-skill. Contains:\n\n**Front-matter spec**\n- Required: name, description\n- Optional: argument-hint (surfaces input prompt to user at invocation), disable-model-invocation (for pure prompt-injection skills that should not be summarised/interpreted)\n\n**Description format rules**\n- Max 1024 chars; target ≤200 chars\n- Third-person declarative (not imperative)\n- First sentence: capability in plain terms\n- Second sentence: 'Use when [natural user-vocabulary triggers]'\n- Include 2-4 quoted user phrases or scenario patterns e.g. 'use when user says \"diagnose this\" or \"something is broken\"'\n- Use vocabulary a user would actually speak, not internal system jargon\n\n**Voice and tone rules (for the skill body)**\n- Imperative, 2nd-person: 'Run X', 'Check Y', 'Report Z' — not 'The skill runs X'\n- Positive framing: rephrase 'don't do X' as 'do Y instead'; reserve 'do not' only for hard correctness/safety stops\n- Rationale pattern: one sentence per non-obvious rule inline — e.g. 'Use absolute paths — agents may change CWD mid-session.' This enables generalisation to cases not predicted.\n- No ALL-CAPS emphasis (CRITICAL, MUST) — plain imperative is sufficient with modern models\n\n**Required sections** (every skill must have these)\n- When to use — what triggers invocation; natural user phrases\n- Workflow — numbered steps (not bullets) for sequential tasks\n- Verification checklist — [ ] items the agent checks before considering done\n\n**Optional sections** (include guidance on: what it is, example content, when useful, when to omit)\n- When NOT to use — immediately after 'When to use'; useful when skill has similar neighbours; omit if skill is unique\n- Red Flags — detectable anti-patterns the agent should self-correct mid-task; useful for discipline-enforcement skills (TDD, security); omit for simple utility skills\n- Common Rationalizations — table of excuses agents make to skip the skill + rebuttals; backed by LLM sycophancy research; useful for process-critical skills; omit for simple orchestration skills\n- Philosophy / rationale — the 'why' behind the approach; useful for opinionated skills where the agent needs to handle novel cases; omit for mechanical utility skills\n- Phase-gate checklists — [ ] checkboxes mid-workflow that must be satisfied before proceeding to next phase; use for multi-phase skills (3+ distinct phases); omit for linear single-phase workflows\n- Cross-skill references — explicit inline invocations of other skills e.g. 'Run the review-security skill before committing'; use when another skill genuinely handles a sub-task rather than re-explaining; omit if the skill is self-contained\n- Examples — 1 complete worked example of the output/outcome; extract to EXAMPLES.md if \u003e30 lines; omit only if the skill is trivially self-evident\n\n**File layout and progressive disclosure**\n- Target ~150 lines for SKILL.md; split when it exceeds this\n- Prefer purpose-named support files over a catch-all REFERENCE.md: EXAMPLES.md (worked examples), FORMAT.md (output schemas/templates), REFERENCE.md (rarely-needed edge cases)\n- skills can reference each other by slash-command inline for composability\n\n**Full annotated template** — a complete SKILL.md template at the end of the doc with every section shown, each annotated with required/optional and guidance notes.\n\n### 2. Update skills/write-a-skill/SKILL.md\n- Raise the line limit from 100 to ~150\n- Add the voice/tone rules (imperative body, positive framing, rationale sentences, no ALL-CAPS)\n- Add argument-hint and disable-model-invocation to the front-matter template\n- Replace the inline template with a reference to docs/skills/skill-anatomy.md\n- Update the Review Checklist to match required sections\n\n### 3. Promote research docs\n- Move .agent-cortex/working-docs/skill-design-research.md → docs/research/skill-design-research.md\n- Move .agent-cortex/working-docs/skill-improvements-analysis.md → docs/research/skill-improvements-analysis.md\n- Add entries to docs/inspirations.md linking to both","acceptance_criteria":"- docs/skills/skill-anatomy.md exists with all required/optional sections documented\n- Each optional section has: what it is, example content snippet, when to include, when to omit\n- Optional sections are positioned logically (When NOT to use next to When to use, etc.)\n- Full annotated SKILL.md template is at the end of the doc\n- skills/write-a-skill/SKILL.md references skill-anatomy.md and reflects updated guidance (150-line limit, voice rules, new front-matter fields)\n- Research docs live in docs/research/ and are linked from docs/inspirations.md","notes":"Include optional ASCII workflow diagrams in the anatomy template so process skills can render flows inline; refactor-skill will propagate the section skill by skill.","status":"closed","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T22:00:04Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:37Z","closed_at":"2026-05-27T18:34:00Z","close_reason":"Closed","labels":["implementation-type:afk","workflow:ralph"],"dependency_count":0,"dependent_count":1,"comment_count":0}
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- {"_type":"issue","id":"agnt-ctx-7aa65b0a","title":"Remove markdown string-match tests","description":"Remove tests that only assert markdown output text matches — they test structure not behaviour and provide no value.\n\n## Exact changes per branch\n\n### feature/agnt-ctx-e1bd7ac9.1\nFile: skills/write-a-skill/scripts/skill-anatomy.test.mjs\nAction: Delete the entire file. Every test in it asserts that SKILL.md contains specific heading strings — pure markdown text-matching with no behavioural value.\n\n### feature/agnt-ctx-e1bd7ac9.2\nFile: skills/run-beads/scripts/references-baseline.test.ts\nAction: Remove only the assertion in 'updates skills to link to shared references' that reads style-code/SKILL.md content and asserts it contains/excludes specific strings. Keep the file-existence assertions in the same test — those test filesystem structure, not markdown content.\n\n### feature/agnt-ctx-e1bd7ac9.5, dp4.6, dp4.7, dp4.8\nFile: skills/run-beads/scripts/generate-progress.test.ts (same change on all four branches)\nAction: Remove these two tests from the 'renderMarkdown' describe block:\n - 'contains section headings for graph and tasks' (asserts output includes '## Dependency Graph', '## Tasks' etc.)\n - 'includes mermaid code block' (asserts output includes '```mermaid')\nKeep the orphaned callout tests — they test conditional rendering logic (callout only appears when orphaned beads exist), not just text structure.\n\n## Do not touch\n- plugin.manifest.test.mjs on dp4.3 — tests JSON structure, not markdown text\n- Any renderMermaidGraph or renderTaskTable tests — they test which bead data appears in output, not heading/fence structure\n- parseBdList, parseBdShow, buildStatusBadge, detectOrphanedBlocked tests — all behavioural","acceptance_criteria":"- skill-anatomy.test.mjs is deleted from feature/agnt-ctx-e1bd7ac9.1\n- The style-code SKILL.md content assertions are removed from references-baseline.test.ts on feature/agnt-ctx-e1bd7ac9.2\n- The 'contains section headings' and 'includes mermaid code block' renderMarkdown tests are removed from generate-progress.test.ts on feature/agnt-ctx-e1bd7ac9.5, dp4.6, dp4.7, dp4.8\n- Test suites pass on all affected branches after the removals\n- No other tests are modified","status":"closed","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T21:53:38Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:37Z","closed_at":"2026-05-27T06:28:18Z","close_reason":"Closed","labels":["implementation-type:afk","workflow:ralph"],"dependency_count":0,"dependent_count":0,"comment_count":0}
116
- {"_type":"issue","id":"agnt-ctx-dbfb670d","title":"[agnt-ctx-e1bd7ac9.7] HITL: Review feature PR","notes":"PR: https://github.com/jaybeeuu/agent-cortex/pull/14","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T11:02:39Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:37Z","closed_at":"2026-05-27T06:49:18Z","close_reason":"Closed","labels":["implementation-type:hitl","lifecycle:feature-pr","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-dbfb670d","depends_on_id":"agnt-ctx-d879541b","type":"parent-child","created_at":"2026-05-25T12:02:51Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
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- {"_type":"issue","id":"agnt-ctx-29044e90","title":"[agnt-ctx-e1bd7ac9.7] Documenting","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T10:59:44Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:37Z","closed_at":"2026-05-25T11:02:16Z","close_reason":"Closed","labels":["stage:documenting","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-29044e90","depends_on_id":"agnt-ctx-d879541b","type":"parent-child","created_at":"2026-05-25T11:59:53Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
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- {"_type":"issue","id":"agnt-ctx-d6623e0b","title":"[agnt-ctx-e1bd7ac9.7] Reviewing","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T10:55:46Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:48Z","closed_at":"2026-05-25T10:59:33Z","close_reason":"Closed","labels":["implementation-type:afk","stage:reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-d6623e0b","depends_on_id":"agnt-ctx-d879541b","type":"parent-child","created_at":"2026-05-25T11:55:55Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
119
- {"_type":"issue","id":"agnt-ctx-b28fda73","title":"[agnt-ctx-e1bd7ac9.7] Verifying","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T10:51:01Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:38Z","closed_at":"2026-05-25T10:55:35Z","close_reason":"Closed","labels":["implementation-type:afk","stage:verifying","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-b28fda73","depends_on_id":"agnt-ctx-d879541b","type":"parent-child","created_at":"2026-05-25T11:51:09Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
120
- {"_type":"issue","id":"agnt-ctx-934d38c6","title":"[agnt-ctx-e1bd7ac9.7] Fixing","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T10:44:34Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:53Z","closed_at":"2026-05-25T10:50:50Z","close_reason":"Closed","labels":["implementation-type:afk","stage:fixing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-934d38c6","depends_on_id":"agnt-ctx-d879541b","type":"parent-child","created_at":"2026-05-25T11:44:42Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
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- {"_type":"issue","id":"agnt-ctx-feb0b16f","title":"[agnt-ctx-e1bd7ac9.7] Reviewing","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T10:33:48Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:38Z","closed_at":"2026-05-25T11:03:16Z","close_reason":"Closed","labels":["stage:reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-feb0b16f","depends_on_id":"agnt-ctx-d879541b","type":"parent-child","created_at":"2026-05-25T11:33:57Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
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- {"_type":"issue","id":"agnt-ctx-67730179","title":"[agnt-ctx-e1bd7ac9.7] Verifying","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T10:22:47Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:38Z","closed_at":"2026-05-25T10:33:37Z","close_reason":"Closed","labels":["implementation-type:afk","stage:verifying","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-67730179","depends_on_id":"agnt-ctx-d879541b","type":"parent-child","created_at":"2026-05-25T11:22:56Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
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- {"_type":"issue","id":"agnt-ctx-84050425","title":"[agnt-ctx-e1bd7ac9.7] Coding","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T10:19:51Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:38Z","closed_at":"2026-05-25T10:22:37Z","close_reason":"Closed","labels":["implementation-type:afk","stage:coding","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-84050425","depends_on_id":"agnt-ctx-d879541b","type":"parent-child","created_at":"2026-05-25T11:20:00Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
124
- {"_type":"issue","id":"agnt-ctx-898186b9","title":"[agnt-ctx-e1bd7ac9.6] HITL: Review feature PR","notes":"PR: https://github.com/jaybeeuu/agent-cortex/pull/13","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T10:19:24Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:47Z","closed_at":"2026-05-27T06:49:36Z","close_reason":"Closed","labels":["implementation-type:hitl","lifecycle:feature-pr","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-898186b9","depends_on_id":"agnt-ctx-8eeafaf9","type":"parent-child","created_at":"2026-05-25T11:19:36Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
125
- {"_type":"issue","id":"agnt-ctx-505e1dd6","title":"[agnt-ctx-e1bd7ac9.8] HITL: Review feature PR","notes":"PR: https://github.com/jaybeeuu/agent-cortex/pull/15","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T10:08:20Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:38Z","closed_at":"2026-05-27T06:49:50Z","close_reason":"Closed","labels":["implementation-type:hitl","lifecycle:feature-pr","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-505e1dd6","depends_on_id":"agnt-ctx-74a536af","type":"parent-child","created_at":"2026-05-25T11:08:33Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
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- {"_type":"issue","id":"agnt-ctx-78999a32","title":"[agnt-ctx-e1bd7ac9.6] Documenting","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T10:05:23Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:38Z","closed_at":"2026-05-25T10:19:04Z","close_reason":"Closed","labels":["implementation-type:afk","stage:documenting","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-78999a32","depends_on_id":"agnt-ctx-8eeafaf9","type":"parent-child","created_at":"2026-05-25T11:05:32Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
127
- {"_type":"issue","id":"agnt-ctx-8ade4adf","title":"[agnt-ctx-e1bd7ac9.8] Documenting","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T10:03:10Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:38Z","closed_at":"2026-05-25T10:07:58Z","close_reason":"Closed","labels":["stage:documenting","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-8ade4adf","depends_on_id":"agnt-ctx-74a536af","type":"parent-child","created_at":"2026-05-25T11:03:19Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
128
- {"_type":"issue","id":"agnt-ctx-cf7dd364","title":"[agnt-ctx-e1bd7ac9.6] Reviewing","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T10:02:21Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:39Z","closed_at":"2026-05-25T10:05:13Z","close_reason":"Closed","labels":["stage:reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-cf7dd364","depends_on_id":"agnt-ctx-8eeafaf9","type":"parent-child","created_at":"2026-05-25T11:02:30Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
129
- {"_type":"issue","id":"agnt-ctx-395b8014","title":"[agnt-ctx-e1bd7ac9.8] Reviewing","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T09:59:53Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:39Z","closed_at":"2026-05-25T10:03:00Z","close_reason":"Closed","labels":["stage:reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-395b8014","depends_on_id":"agnt-ctx-74a536af","type":"parent-child","created_at":"2026-05-25T11:00:04Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
130
- {"_type":"issue","id":"agnt-ctx-52f995c3","title":"[agnt-ctx-e1bd7ac9.6] Verifying","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T09:58:02Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:50Z","closed_at":"2026-05-25T10:02:11Z","close_reason":"Closed","labels":["implementation-type:afk","stage:verifying","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-52f995c3","depends_on_id":"agnt-ctx-8eeafaf9","type":"parent-child","created_at":"2026-05-25T10:58:15Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
131
- {"_type":"issue","id":"agnt-ctx-d13ed705","title":"[agnt-ctx-e1bd7ac9.8] Verifying","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T09:55:59Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:53Z","closed_at":"2026-05-25T09:59:43Z","close_reason":"Closed","labels":["implementation-type:afk","stage:verifying","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-d13ed705","depends_on_id":"agnt-ctx-74a536af","type":"parent-child","created_at":"2026-05-25T10:56:07Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
132
- {"_type":"issue","id":"agnt-ctx-177f0e72","title":"[agnt-ctx-e1bd7ac9.8] Coding","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T09:53:24Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:39Z","closed_at":"2026-05-25T09:55:49Z","close_reason":"Closed","labels":["stage:coding","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-177f0e72","depends_on_id":"agnt-ctx-74a536af","type":"parent-child","created_at":"2026-05-25T10:53:33Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
133
- {"_type":"issue","id":"agnt-ctx-feada56e","title":"[agnt-ctx-e1bd7ac9.5] HITL PR gate","notes":"PR: https://github.com/jaybeeuu/agent-cortex/pull/12","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T09:52:37Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:49Z","closed_at":"2026-05-27T06:50:08Z","close_reason":"Closed","labels":["implementation-type:hitl","lifecycle:feature-pr","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-feada56e","depends_on_id":"agnt-ctx-24381f84","type":"parent-child","created_at":"2026-05-25T10:52:50Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
134
- {"_type":"issue","id":"agnt-ctx-db679c99","title":"[agnt-ctx-e1bd7ac9.6] Coding","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-25T09:52:08Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:28Z","closed_at":"2026-05-25T09:57:52Z","close_reason":"Closed","labels":["implementation-type:afk","stage:coding","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-db679c99","depends_on_id":"agnt-ctx-8eeafaf9","type":"parent-child","created_at":"2026-05-25T10:52:17Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
135
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136
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170
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171
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173
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174
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175
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176
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177
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178
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179
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180
- {"_type":"issue","id":"agnt-ctx-af3699fb","title":"[agnt-ctx-e1bd7ac9.4] Test: uncovered requirements","description":"Feedback from test-reviewing (agnt-ctx-c455995d):\\n- Tests do not explicitly verify core agent behavior enforcement requirements.\\n- Tests do not verify concrete routing coverage for required skill mappings (run-beads, classify-bead, tdd, review-security).\\n- Tests do not assert upstream-alignment expectations beyond broad phrase matching.","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-24T23:32:37Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:44Z","closed_at":"2026-05-24T23:41:12Z","close_reason":"Closed","labels":["implementation-type:afk","stage:test-writing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-af3699fb","depends_on_id":"agnt-ctx-b1e8a6cb","type":"parent-child","created_at":"2026-05-25T00:32:48Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
181
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182
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183
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184
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185
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186
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187
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188
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189
- {"_type":"issue","id":"agnt-ctx-24381f84","title":"Add session-start hook","description":"Add a session-start hook (plus wiring) similar to agent-skills to inject baseline context/meta skill at the start of sessions. Include minimal tests or validation like upstream if applicable.","status":"open","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-24T23:23:23Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:39Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-24381f84","depends_on_id":"agnt-ctx-3af0d9d4","type":"blocks","created_at":"2026-05-27T08:27:20Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-24381f84","depends_on_id":"agnt-ctx-e1bd7ac9","type":"parent-child","created_at":"2026-05-25T00:23:23Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
190
- {"_type":"issue","id":"agnt-ctx-0f40dcc1","title":"[agnt-ctx-e1bd7ac9.4] Coding","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-24T23:22:19Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:38Z","closed_at":"2026-05-24T23:27:09Z","close_reason":"Closed","labels":["implementation-type:afk","stage:coding","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-0f40dcc1","depends_on_id":"agnt-ctx-b1e8a6cb","type":"parent-child","created_at":"2026-05-25T00:22:33Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
191
- {"_type":"issue","id":"agnt-ctx-11b46d10","title":"[agnt-ctx-e1bd7ac9.1] Coding","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-24T23:21:58Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:38Z","closed_at":"2026-05-24T23:26:49Z","close_reason":"Closed","labels":["stage:coding","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-11b46d10","depends_on_id":"agnt-ctx-36bba69d","type":"parent-child","created_at":"2026-05-25T00:22:10Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
192
- {"_type":"issue","id":"agnt-ctx-ac6132d8","title":"[agnt-ctx-e1bd7ac9.2] Coding","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-24T23:20:59Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:37Z","closed_at":"2026-05-24T23:26:55Z","close_reason":"Closed","labels":["stage:coding","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-ac6132d8","depends_on_id":"agnt-ctx-27f901c5","type":"parent-child","created_at":"2026-05-25T00:21:15Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
193
- {"_type":"issue","id":"agnt-ctx-994d65fc","title":"[agnt-ctx-e1bd7ac9.3] Coding","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-24T23:20:34Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:37Z","closed_at":"2026-05-24T23:27:02Z","close_reason":"Closed","labels":["stage:coding","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-994d65fc","depends_on_id":"agnt-ctx-e02b63ec","type":"parent-child","created_at":"2026-05-25T00:20:50Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
194
- {"_type":"issue","id":"agnt-ctx-d3634c69","title":"[agnt-ctx-e1bd7ac9.4] Test writing","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-24T23:15:32Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:37Z","closed_at":"2026-05-24T23:21:50Z","close_reason":"Closed","labels":["stage:test-writing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-d3634c69","depends_on_id":"agnt-ctx-b1e8a6cb","type":"parent-child","created_at":"2026-05-25T00:16:56Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
195
- {"_type":"issue","id":"agnt-ctx-c8448499","title":"[agnt-ctx-e1bd7ac9.3] Test writing","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-24T23:15:17Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:55Z","closed_at":"2026-05-24T23:19:21Z","close_reason":"Closed","labels":["stage:test-writing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-c8448499","depends_on_id":"agnt-ctx-e02b63ec","type":"parent-child","created_at":"2026-05-25T00:16:40Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
196
- {"_type":"issue","id":"agnt-ctx-05780a8b","title":"[agnt-ctx-e1bd7ac9.2] Test writing","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-24T23:15:04Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:55Z","closed_at":"2026-05-24T23:33:36Z","close_reason":"Closed","labels":["stage:test-writing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-05780a8b","depends_on_id":"agnt-ctx-27f901c5","type":"parent-child","created_at":"2026-05-25T00:16:20Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
197
- {"_type":"issue","id":"agnt-ctx-9ed04642","title":"[agnt-ctx-e1bd7ac9.1] Test writing","status":"closed","priority":2,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-24T23:14:50Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:54Z","closed_at":"2026-05-24T23:21:45Z","close_reason":"Closed","labels":["stage:test-writing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-9ed04642","depends_on_id":"agnt-ctx-36bba69d","type":"parent-child","created_at":"2026-05-25T00:15:59Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
198
- {"_type":"issue","id":"agnt-ctx-b1e8a6cb","title":"Add meta/bootstrapping skill","description":"Add a routing/meta skill that helps select the right skill for a task and enforces core agent behaviors. Base it on upstream using-agent-skills and ensure it can be injected at session start in future hooks. Use upstream as the starting content; user will review during code review.","status":"open","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-24T23:06:11Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:37Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-b1e8a6cb","depends_on_id":"agnt-ctx-82b592de","type":"blocks","created_at":"2026-05-27T08:26:58Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-b1e8a6cb","depends_on_id":"agnt-ctx-e1bd7ac9","type":"parent-child","created_at":"2026-05-25T00:06:11Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
199
- {"_type":"issue","id":"agnt-ctx-e02b63ec","title":"Plugin manifest: list agents explicitly","description":"Update plugin.json to list agents as explicit file paths (array) instead of a directory string, aligning with upstream agent-skills patterns and improving compatibility.","status":"open","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-24T23:06:07Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:36Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-e02b63ec","depends_on_id":"agnt-ctx-280e1e04","type":"blocks","created_at":"2026-05-27T08:26:40Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-e02b63ec","depends_on_id":"agnt-ctx-e1bd7ac9","type":"parent-child","created_at":"2026-05-25T00:06:06Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
200
- {"_type":"issue","id":"agnt-ctx-27f901c5","title":"Move cross-skill docs into references/","description":"Create/standardize a references/ directory for shared guidance and move any cross-skill documentation there; update skills to link to references instead of embedding large shared content. Pull in the upstream agent-skills skill-anatomy doc plus reference checklists (testing-patterns, security-checklist, performance-checklist, accessibility-checklist) into references/ as baselines.","status":"closed","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-24T23:05:59Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:36Z","closed_at":"2026-05-25T07:47:54Z","close_reason":"Closed","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-27f901c5","depends_on_id":"agnt-ctx-e1bd7ac9","type":"parent-child","created_at":"2026-05-25T00:05:59Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
201
- {"_type":"issue","id":"agnt-ctx-36bba69d","title":"[write-a-skill] align to agent-skills anatomy","description":"Update write-a-skill to reflect the upstream skill anatomy (overview, when to use/not, common rationalizations, red flags, verification) and evidence-based checks, while preserving local conventions.","status":"closed","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-24T23:05:55Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:35Z","closed_at":"2026-05-25T07:46:46Z","close_reason":"Closed","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-36bba69d","depends_on_id":"agnt-ctx-e1bd7ac9","type":"parent-child","created_at":"2026-05-25T00:05:54Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
202
- {"_type":"issue","id":"agnt-ctx-e1bd7ac9","title":"Integrate agent-skills learnings","description":"Incorporate selected patterns from addyosmani/agent-skills into agent-cortex skills and conventions.","status":"open","priority":2,"issue_type":"epic","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-24T23:05:20Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:35Z","labels":["implementation-type:afk","workflow:ralph"],"dependency_count":0,"dependent_count":0,"comment_count":0}
203
- {"_type":"issue","id":"agnt-ctx-c8e0b96c","title":"Add strategy design agent","description":"Add a new pre-planning design agent that operates at strategy, PRD, and technical-direction levels, confirms inferred level, and produces top-level docs to set up ralph-plan for success.","status":"closed","priority":2,"issue_type":"feature","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-13T08:19:30Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:35Z","closed_at":"2026-05-13T08:26:54Z","close_reason":"Closed","dependency_count":0,"dependent_count":0,"comment_count":0}
204
- {"_type":"issue","id":"agnt-ctx-e64dfe14","title":"Refine technical-direction references","description":"Update technical-direction skill so technical direction memos include references for web research and code evidence (including line-level links) when those sources inform decisions.","status":"closed","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-13T06:44:41Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:35Z","closed_at":"2026-05-13T06:45:14Z","close_reason":"Closed","dependency_count":0,"dependent_count":0,"comment_count":0}
205
- {"_type":"issue","id":"agnt-ctx-ecde74a2","title":"Add technical-direction skill","description":"Create a new technical-direction skill for collaborative technical design that challenges assumptions, surfaces constraints/tradeoffs, explores alternatives from codebase/web, and produces a markdown technical direction memo.","status":"closed","priority":2,"issue_type":"feature","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-13T06:39:05Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:34Z","closed_at":"2026-05-13T06:41:41Z","close_reason":"Closed","dependency_count":0,"dependent_count":0,"comment_count":0}
206
- {"_type":"issue","id":"agnt-ctx-f9fb2846","title":"TDD pipeline: update ralph.agent.md for new pipeline","description":"Update agents/ralph.agent.md to orchestrate the TDD pipeline.\n\nChanges needed:\n\n1. Inflight state format — replace 'revision' with two counters:\n - tddLoops: number (incremented each time test-writing is dispatched; max 5)\n - reviewRounds: number (incremented each time coding is dispatched after a reviewer CHANGES_REQUESTED; max 2)\n\n2. Initialization — initial stage for a new bead is now test-writing (not coding). Tag: bd tag \u003cid\u003e stage:test-writing\n\n3. Dispatch rules — update to match new pipeline (see SKILL.md bead for full table):\n - test-writing done → coding\n - coding done → test-reviewing\n - test-reviewing DONE → verifying\n - test-reviewing NEEDS_MORE → test-writing (increment tddLoops); if tddLoops \u003e= 5 → mark blocked\n - verifying PASS → reviewing\n - verifying FAIL → coding\n - reviewing APPROVED → documenting\n - reviewing CHANGES_REQUESTED → coding (increment reviewRounds); if reviewRounds \u003e= 2 → mark blocked\n - documenting → close\n\n4. Blocked-on-cap handling — when either cap is hit: bd update \u003cid\u003e --status blocked with a note explaining which cap was hit. Add to a 'Needs Human Intervention' shutdown summary (separate from HITL and NEEDS-REFINEMENT lists).\n\n5. Shutdown — add a third summary table for beads blocked due to cap exhaustion.","status":"closed","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-03T11:04:11Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:47Z","closed_at":"2026-05-03T11:14:42Z","close_reason":"Closed","labels":["implementation-type:afk"],"dependencies":[{"issue_id":"agnt-ctx-f9fb2846","depends_on_id":"agnt-ctx-892b8ba7","type":"blocks","created_at":"2026-05-03T12:04:23Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-f9fb2846","depends_on_id":"agnt-ctx-8c59c3f2","type":"blocks","created_at":"2026-05-03T12:04:23Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":2,"dependent_count":0,"comment_count":0}
207
- {"_type":"issue","id":"agnt-ctx-8c59c3f2","title":"TDD pipeline: add test-writing and test-reviewing prompt templates to REFERENCE.md","description":"Add two new prompt templates to skills/run-beads/REFERENCE.md:\n\n## Test-Writing Prompt\n- Include bd prime output, bd show output, existing tests (if any — for loop iterations 2+), dependency context\n- Instructions: write a minimal set of fully failing tests for the NEXT uncovered requirement slice. Do not write all tests at once. Tests must be runnable (imports can reference not-yet-existing paths).\n- REPORT fields: BEAD_ID, STAGE_COMPLETED: test-writing, SUMMARY, FILES_CHANGED, TEST_FILES_WRITTEN\n\n## Test-Reviewing Prompt\n- Include bd prime output, bd show \u003cid\u003e, list of test files, bead requirements/acceptance criteria\n- Instructions: compare the tests against the bead's acceptance criteria and requirements. Determine if all requirements are adequately covered by at least one test. Do NOT look at the implementation — only tests vs requirements.\n- REPORT fields: BEAD_ID, STAGE_COMPLETED: test-reviewing, SUMMARY, FILES_CHANGED: none, TEST_REVIEW_OUTCOME: DONE|NEEDS_MORE, GAPS (only if NEEDS_MORE): list of uncovered requirements\n\nAlso update the Coding Prompt: remove the inline TDD instructions (the coder no longer does red-green-refactor themselves — tests are provided). Coder receives test files and must make them pass with minimal implementation.\n\nUpdate the Fixing Prompt: after applying fixes, note that the agent hands off to test-reviewing (not directly to verifying).","status":"closed","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-03T11:03:58Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:34Z","closed_at":"2026-05-03T11:10:19Z","close_reason":"Closed","labels":["implementation-type:afk"],"dependency_count":0,"dependent_count":1,"comment_count":0}
208
- {"_type":"issue","id":"agnt-ctx-892b8ba7","title":"TDD pipeline: update SKILL.md pipeline table and dispatch rules","description":"Replace the existing pipeline table and dispatch rules in skills/run-beads/SKILL.md with the TDD pipeline.\n\nNew pipeline order: test-writing → coding → test-reviewing → verifying → reviewing → fixing → documenting → closed\n\nNew dispatch rules:\n- test-writing completes → coding\n- coding completes → test-reviewing\n- test-reviewing: NEEDS_MORE → test-writing (increment tddLoops); DONE → verifying\n- verifying: PASS → reviewing; FAIL → coding\n- reviewing: APPROVED → documenting; CHANGES_REQUESTED (reviewRounds \u003c 2) → coding; CHANGES_REQUESTED (reviewRounds \u003e= 2) → mark bead blocked\n- tddLoops hits 5 → mark bead blocked\n- documenting → close\n\nAlso update the classification section header (already says AFK/HITL/NEEDS-REFINEMENT) and the stage list in the Stage Transitions section.","status":"closed","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-03T11:03:57Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:34Z","closed_at":"2026-05-03T11:10:19Z","close_reason":"Closed","labels":["implementation-type:afk"],"dependency_count":0,"dependent_count":1,"comment_count":0}
209
- {"_type":"issue","id":"agnt-ctx-13c7f444","title":"TDD pipeline: add test-writing and test-reviewing stages to generate-progress.ts","description":"Add `test-writing` and `test-reviewing` to the Stage type and stage-parsing logic in skills/run-beads/scripts/generate-progress.ts.\n\nCurrent Stage type: 'coding' | 'reviewing' | 'fixing' | 'documenting' | null\nUpdate to: 'test-writing' | 'coding' | 'test-reviewing' | 'verifying' | 'reviewing' | 'fixing' | 'documenting' | null\n\nAlso update the stage label parsing guard (around line 122) that maps stage: labels to Stage values — add test-writing and test-reviewing to the allowed list. Run existing tests (generate-progress.test.ts) to confirm nothing broken.","status":"closed","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-03T11:03:31Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:54Z","closed_at":"2026-05-03T11:10:18Z","close_reason":"Closed","labels":["implementation-type:afk"],"dependency_count":0,"dependent_count":0,"comment_count":0}
210
- {"_type":"issue","id":"agnt-ctx-2a9d0523","title":"Add verifying stage to run-beads pipeline","description":"The run-beads pipeline (and by extension the ralph loop) has no step that runs tests or linting. As a result beads can be declared complete with failing tests or lint errors.\n\n## Type\n\nAFK\n\n## Design\n\nAdd a `verifying` stage between coding/fixing and reviewing. The verifying subagent runs the project's test suite and linter (discovering commands from package.json scripts, Makefile, etc.) and reports PASS or FAIL.\n\nNew dispatch table:\n| Stage completed | Condition | Next action |\n|-----------------|-----------|-------------|\n| `coding` | — | Run **verifying** stage |\n| `fixing` | — | Run **verifying** stage |\n| `verifying` | PASS | Run **reviewing** stage |\n| `verifying` | FAIL | Run **fixing** stage, increment revision # (counts toward max 4) |\n| `reviewing` | APPROVED | Run **documenting** stage |\n| `reviewing` | CHANGES_REQUESTED, revision \u003c 4 | Run **fixing** stage, increment revision # |\n| `reviewing` | CHANGES_REQUESTED, revision ≥ 4 | `bd close` — failed |\n| `documenting` | — | `bd close` — done |\n\nThe REPORT block for verifying:\n```\n---REPORT---\nBEAD_ID: \u003cid\u003e\nSTAGE_COMPLETED: verifying\nSUMMARY: \u003cwhat was run and outcome\u003e\nFILES_CHANGED: none\nVERIFY_OUTCOME: \u003cPASS|FAIL\u003e\nVERIFY_FAILURES: ← only if VERIFY_OUTCOME is FAIL\n- \u003ctest/lint failure summary\u003e\n---\n```\n\n## Changes required\n\n1. **`skills/run-beads/SKILL.md`** — add `verifying` row to the Pipeline table and update the Dispatch Rules table.\n2. **`skills/run-beads/REFERENCE.md`** — add a Verifying Prompt template. It should: discover test/lint commands, run them, capture output, and report PASS/FAIL with failure details.\n3. **`skills/run-beads/SKILL.md`** — update progress logging guidance to include `verifying` stage transitions and test/lint result lines.\n4. **`agents/ralph.agent.md`** — update the In-flight stage column comment to include `verifying`, and update the log-polling stage-transition example.\n5. **`plugin.json`** — bump minor version (new behaviour added).\n\n## Acceptance criteria\n\n- The pipeline table in SKILL.md lists verifying between fixing/coding and reviewing.\n- The dispatch rules in SKILL.md correctly route PASS → reviewing and FAIL → fixing.\n- REFERENCE.md contains a Verifying Prompt template that instructs the subagent to discover and run tests and linting.\n- The report block format for verifying is documented in SKILL.md.\n- ralph.agent.md references the verifying stage in its state document example and log polling section.\n- plugin.json version is bumped (minor).\n- No existing pipeline behaviour is broken for beads that have no test/lint commands (verifier should PASS if no commands are found).","status":"closed","priority":2,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-04-14T07:39:04Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:54Z","closed_at":"2026-04-14T09:59:25Z","close_reason":"Added verifying stage to run-beads pipeline: pipeline table, dispatch rules, Verifying Prompt template in REFERENCE.md, progress logging updated, ralph.agent.md updated, plugin.json bumped to 0.15.0.","labels":["implementation-type:afk","stage:documenting","stage:fixing","stage:reviewing","stage:verifying"],"dependency_count":0,"dependent_count":0,"comment_count":0}
211
- {"_type":"issue","id":"agnt-ctx-dbd22ecc","title":"Swarm: Test Epic","description":"Swarm molecule orchestrating epic agnt-ctx-91b1f701.\n\nEpic: agnt-ctx-91b1f701\nCoordinator: ","status":"closed","priority":2,"issue_type":"molecule","created_at":"2026-04-14T07:34:19Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:53Z","closed_at":"2026-04-14T07:34:51Z","close_reason":"test cleanup","dependencies":[{"issue_id":"agnt-ctx-dbd22ecc","depends_on_id":"agnt-ctx-91b1f701","type":"relates-to","created_at":"2026-04-14T08:34:18Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"mol_type":"swarm","dependency_count":0,"dependent_count":0,"comment_count":0}
212
- {"_type":"issue","id":"agnt-ctx-1ad8f3de","title":"Test child task","status":"closed","priority":2,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-04-14T07:33:46Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:34Z","closed_at":"2026-04-14T07:34:50Z","close_reason":"test cleanup","labels":["epic:agent-nexus-9vx"],"dependency_count":0,"dependent_count":0,"comment_count":0}
213
- {"_type":"issue","id":"agnt-ctx-91b1f701","title":"Test Epic","status":"closed","priority":2,"issue_type":"epic","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-04-14T07:33:40Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:51Z","closed_at":"2026-04-14T07:34:50Z","close_reason":"test cleanup","dependency_count":0,"dependent_count":0,"comment_count":0}
214
- {"_type":"issue","id":"agnt-ctx-42zy","title":"Create copilot installer (agent-cortex install copilot)","description":"Build the Copilot CLI harness installer in bin/installers/copilot.mjs.\\n\\nLower priority — only if Copilot CLI support is maintained.\\nOutputs agents to copilot/agents/\u003cname\u003e.agent.md.","status":"open","priority":3,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-07-10T22:27:35Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-07-10T22:27:35Z","labels":["implementation-type:afk","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-42zy","depends_on_id":"agnt-ctx-1odb","type":"blocks","created_at":"2026-07-10T23:28:02Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-42zy","depends_on_id":"agnt-ctx-b7ik","type":"blocks","created_at":"2026-07-10T23:28:03Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":2,"dependent_count":0,"comment_count":0}
215
- {"_type":"issue","id":"agnt-ctx-n4s9","title":"[agnt-ctx-67191ed9] Coding","status":"in_progress","priority":3,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-28T18:46:21Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:46:44Z","labels":["stage:coding","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-n4s9","depends_on_id":"agnt-ctx-67191ed9","type":"parent-child","created_at":"2026-05-28T19:46:37Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
216
- {"_type":"issue","id":"agnt-ctx-vkk4","title":"[agnt-ctx-67191ed9] Test writing","status":"closed","priority":3,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-28T18:33:00Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:46:15Z","closed_at":"2026-05-28T18:46:15Z","close_reason":"Closed","labels":["implementation-type:afk","stage:test-writing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-vkk4","depends_on_id":"agnt-ctx-67191ed9","type":"parent-child","created_at":"2026-05-28T19:33:22Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
217
- {"_type":"issue","id":"agnt-ctx-c75227e5","title":"[agnt-ctx-7081bcb8] Finalize documentation","status":"closed","priority":3,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T18:47:23Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:33Z","closed_at":"2026-05-27T18:49:17Z","close_reason":"Closed","labels":["stage:documenting","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-c75227e5","depends_on_id":"agnt-ctx-7081bcb8","type":"parent-child","created_at":"2026-05-27T19:47:23Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
218
- {"_type":"issue","id":"agnt-ctx-2fbba7c6","title":"[agnt-ctx-7081bcb8] Review post-fix implementation","status":"closed","priority":3,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T18:44:30Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:33Z","closed_at":"2026-05-27T18:47:22Z","close_reason":"Closed","labels":["implementation-type:afk","stage:reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-2fbba7c6","depends_on_id":"agnt-ctx-7081bcb8","type":"parent-child","created_at":"2026-05-27T19:44:31Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
219
- {"_type":"issue","id":"agnt-ctx-73e15dc4","title":"[agnt-ctx-7081bcb8] Verify post-fix implementation","status":"closed","priority":3,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T18:41:03Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:54Z","closed_at":"2026-05-27T18:44:29Z","close_reason":"Closed","labels":["implementation-type:afk","stage:verifying","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-73e15dc4","depends_on_id":"agnt-ctx-7081bcb8","type":"parent-child","created_at":"2026-05-27T19:41:03Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
220
- {"_type":"issue","id":"agnt-ctx-f3a47db4","title":"[agnt-ctx-7081bcb8] Validate post-fix planning-gate coverage","status":"closed","priority":3,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T18:37:57Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:28Z","closed_at":"2026-05-27T18:41:02Z","close_reason":"Closed","labels":["implementation-type:afk","stage:test-reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-f3a47db4","depends_on_id":"agnt-ctx-7081bcb8","type":"parent-child","created_at":"2026-05-27T19:37:58Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
221
- {"_type":"issue","id":"agnt-ctx-77bfd7a9","title":"[agnt-ctx-7081bcb8] Fix: reviewer feedback","description":"BLOCKING_ISSUES from reviewing:\\n- Step 6 must require per-feature user confirmation before closing each planning gate.\\n- Step 6 must require cold-start-ready feature/task descriptions (decisions, open questions, references).\\n- Step 7 must report gate status (✅/⏳) and explicit remaining-open warning.","status":"closed","priority":3,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T18:33:43Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:33Z","closed_at":"2026-05-27T18:37:57Z","close_reason":"Closed","labels":["stage:fixing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-77bfd7a9","depends_on_id":"agnt-ctx-7081bcb8","type":"parent-child","created_at":"2026-05-27T19:33:45Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
222
- {"_type":"issue","id":"agnt-ctx-f00c897f","title":"[agnt-ctx-7081bcb8] Review planning-gate implementation","status":"closed","priority":3,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T18:27:31Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:33Z","closed_at":"2026-05-27T18:32:30Z","close_reason":"Closed","labels":["implementation-type:afk","stage:reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-f00c897f","depends_on_id":"agnt-ctx-7081bcb8","type":"parent-child","created_at":"2026-05-27T19:27:32Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
223
- {"_type":"issue","id":"agnt-ctx-f2dd06fb","title":"[agnt-ctx-7081bcb8] Verify planning-gate implementation","status":"closed","priority":3,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T18:25:50Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:32Z","closed_at":"2026-05-27T18:27:30Z","close_reason":"Closed","labels":["stage:verifying","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-f2dd06fb","depends_on_id":"agnt-ctx-7081bcb8","type":"parent-child","created_at":"2026-05-27T19:25:51Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
224
- {"_type":"issue","id":"agnt-ctx-d4a0e068","title":"[agnt-ctx-7081bcb8] Validate planning-gate requirement coverage","status":"closed","priority":3,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T18:21:08Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:48Z","closed_at":"2026-05-27T18:25:49Z","close_reason":"Closed","labels":["implementation-type:afk","stage:test-reviewing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-d4a0e068","depends_on_id":"agnt-ctx-7081bcb8","type":"parent-child","created_at":"2026-05-27T19:21:10Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
225
- {"_type":"issue","id":"agnt-ctx-5b87dc12","title":"[agnt-ctx-7081bcb8] Implement planning-gate behavior","status":"closed","priority":3,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T18:15:44Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:32Z","closed_at":"2026-05-27T18:21:07Z","close_reason":"Closed","labels":["implementation-type:afk","stage:coding","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-5b87dc12","depends_on_id":"agnt-ctx-7081bcb8","type":"parent-child","created_at":"2026-05-27T19:15:46Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
226
- {"_type":"issue","id":"agnt-ctx-212ad9b5","title":"[agnt-ctx-7081bcb8] Write failing tests for planning gate behavior","status":"closed","priority":3,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T18:09:11Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:32Z","closed_at":"2026-05-27T18:15:40Z","close_reason":"Closed","labels":["implementation-type:afk","stage:test-writing","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-212ad9b5","depends_on_id":"agnt-ctx-7081bcb8","type":"parent-child","created_at":"2026-05-27T19:09:26Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
227
- {"_type":"issue","id":"agnt-ctx-c3091eb5","title":"Plan: ASCII workflow diagrams","description":"HITL planning gate for agnt-ctx-67191ed9 (Add ASCII workflow diagrams to process skills).\n\n## What vc3 intends to build\n\nAdd ASCII art workflow diagrams to process skills that currently describe flows in prose or tables:\n- tdd — red-green-refactor loop, TDD cycle diagram\n- prd-to-plan — phase breakdown flow\n- write-a-prd — interview → sketch → PRD pipeline\n- run-beads — pipeline stages\n\nBased on addyosmani/agent-skills pattern. Research basis: spatial/sequential representations in text improve model comprehension of multi-step flows.\n\n## What to discuss in planning\n\n- Which exact diagram goes in which skill file? Is inline ASCII or a link to FORMAT.md better?\n- What diagramming style? Box/arrow ASCII, flowchart style, or simple indented tree?\n- Are there additional skills beyond the 4 listed that would benefit (e.g. ralph, epic-to-tasks)?\n- Should the diagram be placed at the top of the Workflow section or before it?\n- Is this dependent on agnt-ctx-f9206f78 (anatomy template) given diagrams may become a standard optional section?\n- How do we validate the diagrams actually render usefully in the CLI context?\n\n## Priority\n\nP3 — low priority polish item. Consider whether this should wait until after the anatomy template (dal) is done, since 'workflow diagrams' may become a formal optional section in the template.\n\nClose once approach is agreed and agnt-ctx-67191ed9 description is updated with the plan.\n","status":"closed","priority":3,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T11:21:04Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:53Z","closed_at":"2026-05-27T18:11:47Z","close_reason":"Subsumed by agent-nexus-dal template work","dependency_count":0,"dependent_count":1,"comment_count":0}
228
- {"_type":"issue","id":"agnt-ctx-7081bcb8","title":"Update ralph-plan agent: create HITL planning gate for each new bead","description":"Update the ralph-plan agent so that every new feature bead it creates gets a HITL planning gate, blocking implementation until the user confirms the approach is ready.\n\n## Why this matters\n\nralph ran the agnt-ctx-e1bd7ac9 epic and created 8 feature branches, opened 8 PRs, and committed significant work — all without any per-feature planning conversation. None merged. All had to be cleaned up. Root cause: ralph-plan creates AFK beads and ralph immediately picks them up with no mandatory gate between \"bead created\" and \"implementation started\".\n\n## Key decisions\n\n1. **Gate per feature**: every new feature/task bead gets a companion HITL planning gate — no exceptions\n2. **User confirms closure**: ralph-plan presents each feature's plan and asks the user \"is this sufficiently planned to hand to ralph, or do we need a dedicated planning session?\" The agent does not close gates autonomously\n3. **Cold-start-ready descriptions**: every feature bead ralph-plan creates must contain enough context for a future session to plan it without the original conversation — include: what was discussed, decisions made, open questions, references to working-docs files or research, relevant background\n4. **Explicit step 7 flagging**: the bead list summary shows each gate's status (✅ closed / ⏳ open) and explicitly states \"N gate(s) remain open — ralph cannot start these until a planning session closes them\"\n5. **Not chore beads**: pipeline stage chores (coding/reviewing/documenting) created by `create-task` do not get planning gates — only parent feature/task beads\n\n## What to change\n\nSingle file: `agents/ralph-plan.agent.md`\n\n**Step 6 addition** — after creating each feature/task bead:\n- Create a HITL planning bead titled \"Plan: [feature title]\"\n- `bd dep add \u003cfeature\u003e \u003cgate\u003e` to block the feature\n- Label the gate `implementation-type:hitl`\n- Write into the gate's description: what was discussed, any decisions, open questions, references to working-docs or research files — enough for a cold start\n- Present the feature to the user: \"Is [feature] sufficiently planned to hand to ralph? (If yes I'll close the gate; if no, leave it open for a dedicated planning session.)\"\n- Close the gate only if the user confirms yes\n\n**Step 6 addition — bead descriptions**:\n- Before creating each feature bead, write its description to include: goal, what was decided in this session, open questions, and references to any relevant `.agent-cortex/working-docs/` files or research\n- A future session reading only `bd show \u003cid\u003e` and the referenced files must have enough context to plan and implement it\n\n**Step 7 addition** — in the bead list:\n- Show gate status (✅ closed / ⏳ needs planning session) for each feature\n- If any gates remain open: \"N planning gate(s) remain open — ralph cannot start these features until each is closed in a dedicated planning session\"\n\n## Out of scope\n\n- `create-task` skill — only creates chore sub-tasks; no change needed\n- `ralph/SKILL.md` — already correctly skips HITL beads; no change needed\n\n## Acceptance\n\n- ralph-plan creates a planning gate for every feature bead it files\n- Gate closure requires explicit user confirmation\n- Every feature bead description is self-contained enough to plan cold in a new session\n- Step 7 summary explicitly reports open gates\n","status":"closed","priority":3,"issue_type":"feature","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T07:28:48Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:32Z","closed_at":"2026-05-27T18:49:18Z","close_reason":"Closed","labels":["implementation-type:afk","workflow:ralph"],"dependency_count":0,"dependent_count":0,"comment_count":0}
229
- {"_type":"issue","id":"agnt-ctx-18907c9d","title":"Plan: prd-to-plan SDD spec-cache hook","description":"HITL planning gate for agnt-ctx-e1bd7ac9.7.\n\n## Session context (2026-05-27)\n\nThis bead arose from a cleanup session after ralph ran the agnt-ctx-e1bd7ac9 epic without planning gates. In branch feature/agnt-ctx-e1bd7ac9.7 (now deleted), ralph added a new pre-hook step to skills/prd-to-plan/SKILL.md. PR #14 was opened but never merged.\n\n## What ralph attempted\n\nRalph added a step to prd-to-plan/SKILL.md: 'Before planning, load cached SDD spec context from .agent-cortex/ralph/cache/sdd-spec-context.md. Treat cached decisions as required input — only replace when the current PRD explicitly supersedes them.' The step included a bash block to read the cache file.\n\n## What to discuss in planning\n\n- Does this solve a real problem? Do we actually lose architectural decisions between prd-to-plan sessions?\n- 'SDD' (Spec-Driven Development) — do we want this terminology? What does it mean in our context?\n- Who writes the cache? Options: (a) prd-to-plan extracts decisions when writing a plan, (b) a separate skill/hook, (c) user maintains it manually\n- What happens when the cache is stale or wrong? Should the agent flag conflicts?\n- Is this a prd-to-plan concern or should it live in ralph.agent.md as a pre-planning step?\n- Simpler alternative: does 'bd prime' or the plan file from the previous session already serve this purpose?\n\n## Relevant research\n\n- LIMA (arXiv:2305.11206, NeurIPS 2023): small curated context beats large dumps\n- .agent-cortex/working-docs/skill-design-research.md — context-setting evidence\n\n## Priority\n\nP3 — lower than agnt-ctx-f9206f78. Can be planned independently of dp4.4/dp4.5.\n\nClose once approach is agreed and agnt-ctx-e1bd7ac9.7 description is updated with the plan.\n","status":"open","priority":3,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T07:28:32Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:32Z","labels":["implementation-type:hitl","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-18907c9d","depends_on_id":"agnt-ctx-d879541b","type":"parent-child","created_at":"2026-05-27T08:28:31Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":1,"comment_count":0}
230
- {"_type":"issue","id":"agnt-ctx-3af0d9d4","title":"Plan: session-start hook","description":"HITL planning gate for agnt-ctx-e1bd7ac9.5.\n\n## Session context (2026-05-27)\n\nThis bead arose from a cleanup session after ralph ran the agnt-ctx-e1bd7ac9 epic without planning gates. In branch feature/agnt-ctx-e1bd7ac9.5 (now deleted), ralph created a hooks.json (10 lines) wiring a session-start hook and updated plugin.json. PR #12 was opened but never merged.\n\n## What ralph attempted\n\n- hooks.json: new file defining a session-start hook\n- plugin.json: updated to reference hooks.json\n\n## What to discuss in planning\n\n- What should the session-start hook actually do? Options: (a) run 'bd prime' and inject output, (b) load the meta/bootstrapping skill (dp4.4), (c) inject AGENTS.md or a context file, (d) something else\n- Does our plugin infrastructure actually support hooks.json? Check plugin.json schema and Copilot CLI docs.\n- Evidence: does injecting context at session start measurably improve agent behaviour? (Anthropic Building Effective Agents discusses context injection.)\n- Risk: a hook on every session start could bloat context window or slow startup.\n- Strongly related to dp4.4 (meta/bootstrapping skill) — consider whether these are one bead.\n\n## Relevant research\n\n- .agent-cortex/working-docs/skill-design-research.md — context-setting evidence\n- https://www.anthropic.com/research/building-effective-agents — context injection patterns\n\n## Priority\n\nP3 — lower than agnt-ctx-f9206f78. Plan together with dp4.4.\n\nClose once approach is agreed and agnt-ctx-e1bd7ac9.5 description is updated with the plan.\n","status":"open","priority":3,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T07:27:15Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:31Z","labels":["implementation-type:hitl","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-3af0d9d4","depends_on_id":"agnt-ctx-24381f84","type":"parent-child","created_at":"2026-05-27T08:27:15Z","created_by":"Josh Bickley-Wallace","metadata":"{}"},{"issue_id":"agnt-ctx-3af0d9d4","depends_on_id":"agnt-ctx-82b592de","type":"blocks","created_at":"2026-05-28T19:48:34Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":1,"comment_count":0}
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- {"_type":"issue","id":"agnt-ctx-82b592de","title":"Plan: meta/bootstrapping skill","description":"HITL planning gate for agnt-ctx-e1bd7ac9.4.\n\n## Session context (2026-05-27)\n\nThis bead arose from a cleanup session after ralph ran the agnt-ctx-e1bd7ac9 epic without planning gates. Ralph started a branch (feature/agnt-ctx-e1bd7ac9.4, now deleted) but committed nothing — the concept was never implemented.\n\n## What was intended\n\n'Add a routing/meta skill that helps select the right skill for a task and enforces core agent behaviors. Base it on upstream using-agent-skills and ensure it can be injected at session start in future hooks.'\n\nThe upstream reference is addyosmani/agent-skills which has a 'using-agent-skills' meta skill describing how to select and sequence other skills and what core agent behaviours to enforce.\n\n## What to discuss in planning\n\n- What is the concrete job of this skill? Options: (a) routing: help pick the right skill, (b) enforcement: inject core behaviours, (c) bootstrapping: load session context, (d) all of the above\n- Is this a skill (user-invoked), an agent (always active), or a hook (auto-runs)?\n- How does this relate to dp4.5 (session-start hook)? Are they the same thing? Consider planning both together.\n- What does the addyosmani 'using-agent-skills' skill contain — worth adopting or adapting?\n- Minimum viable version: a single SKILL.md an agent loads when uncertain which skill to use.\n\n## Relevant research\n\n- .agent-cortex/working-docs/skill-improvements-analysis.md\n- arXiv:2401.12954 (meta-prompting, Suzgun 2024): high-level orchestration +17.1% vs per-task prompting\n- Strongly recommend planning dp4.4 and dp4.5 in the same session\n\n## Priority\n\nP3 — lower than agnt-ctx-f9206f78. Plan together with dp4.5.\n\nClose once approach is agreed and agnt-ctx-e1bd7ac9.4 description is updated with the plan.\n","status":"open","priority":3,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T07:26:54Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:31Z","labels":["implementation-type:hitl","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-82b592de","depends_on_id":"agnt-ctx-b1e8a6cb","type":"parent-child","created_at":"2026-05-27T08:26:54Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":2,"comment_count":0}
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- {"_type":"issue","id":"agnt-ctx-280e1e04","title":"Plan: list agents explicitly in plugin.json","description":"HITL planning gate for agnt-ctx-e1bd7ac9.3.\n\n## Session context (2026-05-27)\n\nThis bead arose from a cleanup session after ralph ran the agnt-ctx-e1bd7ac9 epic (integrate agent-skills learnings) without proper planning gates. All branches were created, PRs opened but never merged, then cleaned up. This feature was preserved because the change looks valid and discrete.\n\n## What ralph attempted\n\nIn branch feature/agnt-ctx-e1bd7ac9.3 (now deleted), ralph made:\n- plugin.json: changed 'agents': 'agents/' (directory string) → 'agents': ['agents/ralph.agent.md'] (explicit array)\n- .github/workflows/ci.yml: added agents validation step\n- plugin.manifest.test.mjs: added test asserting agents is an explicit array with the expected paths\n\nThe PR (#11) was opened but never merged or reviewed.\n\n## What to discuss in the planning session\n\n- Is an explicit array better than a directory string? The upstream repos (addyosmani/agent-skills, mattpocock/skills) both use explicit skill path arrays in their manifests — this follows that pattern.\n- Risk: every time a new agent file is added, plugin.json must also be updated. Is that acceptable overhead?\n- Should the CI check validate that every file listed in agents[] actually exists?\n- Is the manifest test checking the right things? (Structure vs content)\n- Is this worth the maintenance overhead given we currently only have one agent (ralph.agent.md)?\n\n## Relevant research\n\n- docs/inspirations.md — references the upstream repos whose manifest pattern this follows\n- The addyosmani and mattpocock repos both use explicit path arrays\n\n## Priority\n\nLower priority than agnt-ctx-f9206f78 (skill anatomy template). Pick this up once dal is done.\n\nClose this bead once approach is agreed and agnt-ctx-e1bd7ac9.3 description is updated with the plan.","status":"open","priority":3,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-27T07:26:35Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:31Z","labels":["implementation-type:hitl","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-280e1e04","depends_on_id":"agnt-ctx-e02b63ec","type":"parent-child","created_at":"2026-05-27T08:26:35Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":1,"comment_count":0}
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- {"_type":"issue","id":"agnt-ctx-de529699","title":"[agnt-ctx-7e1cd49a] Add cross-skill references","status":"in_progress","priority":3,"issue_type":"chore","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T23:04:33Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:52Z","labels":["stage:coding","workflow:ralph"],"dependencies":[{"issue_id":"agnt-ctx-de529699","depends_on_id":"agnt-ctx-7e1cd49a","type":"parent-child","created_at":"2026-05-27T00:05:15Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":0,"dependent_count":0,"comment_count":0}
234
- {"_type":"issue","id":"agnt-ctx-7e1cd49a","title":"Add cross-references between related skills","description":"addyosmani/agent-skills skills consistently reference related skills by path (e.g. 'see skills/security-and-hardening/SKILL.md') to enable progressive disclosure and avoid duplicating content. Our skills are largely self-contained silos. Add 'See Also' sections or inline references where skills share concerns or hand off to each other. Example pairs: review-security ↔ style-code (security checklist), tdd ↔ run-beads (test-writing stage), write-a-prd ↔ prd-to-plan (handoff), prd-to-plan ↔ epic-to-tasks (handoff). Reduces duplication and helps agents chain skills correctly.","status":"in_progress","priority":3,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T21:43:55Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:30Z","dependency_count":0,"dependent_count":0,"comment_count":0}
235
- {"_type":"issue","id":"agnt-ctx-67191ed9","title":"Add ASCII workflow diagrams to process skills","description":"Refocus this bead to update the **skill anatomy template** (not bulk-edit individual skills).\n\n## Goal\nAdd ASCII workflow diagram guidance to the canonical template so diagrams are applied consistently during later skill-by-skill refactors.\n\n## Scope\nTemplate-level edits only:\n1. `docs/skills/skill-anatomy.md`\n - Add an optional section definition for inline ASCII workflow diagrams.\n - Define when to include vs omit.\n - Provide one concise diagram style guide (simple, CLI-safe, monospace-friendly).\n - Add a short example snippet in the annotated template.\n2. `skills/write-a-skill/SKILL.md`\n - Reference the diagram guidance so newly written skills follow the same pattern.\n\n## Out of scope\n- Do **not** add diagrams to every existing skill in this bead.\n- Do **not** run cross-repo mass refactors here.\n\n## Why\nWe will refactor skills one-by-one using the refactor workflow. The template must define the standard first; skill updates can follow.\n\n## Acceptance\n- Anatomy template includes an optional ASCII workflow-diagram section with inclusion/omission guidance.\n- Annotated template shows one inline ASCII diagram example.\n- write-a-skill references this guidance.\n- No broad multi-skill edits in this bead.\n","design":"Goal\nDefine a reusable standard for ASCII workflow diagrams in the canonical skill template so future skill-by-skill refactors apply diagrams consistently without inventing style per skill.\n\nKey decisions\n- Diagrams are ASCII-only (no Mermaid) for reliable CLI rendering.\n- Diagram content lives inside `## Workflow` as the first item, not in a separate section.\n- Include diagrams only for multi-step or branching workflows; omit for simple linear flows.\n- This bead updates template guidance only; it does not mass-edit existing skills.\n\nOrdered workstreams\n1. Update `docs/skills/skill-anatomy.md` optional-section guidance to define an inline ASCII workflow diagram pattern under `## Workflow`.\n2. Add inclusion/omission criteria and a compact style guide (monospace-safe, low-width, clear arrows/branch labels).\n3. Extend the annotated template with one short inline ASCII workflow example placed at the top of `## Workflow`.\n4. Update `skills/write-a-skill/SKILL.md` so new skills follow the same diagram rules and inclusion criteria.\n\nRisks / out-of-scope\n- Out of scope: adding diagrams across all existing skills in this bead.\n- Risk: overusing diagrams for simple skills; mitigated by explicit omit criteria.\n- Risk: style drift across future edits; mitigated by a single template source of truth.\n\nReferences\n- `docs/skills/skill-anatomy.md`\n- `skills/write-a-skill/SKILL.md`\n","status":"in_progress","priority":3,"issue_type":"task","assignee":"Josh Bickley-Wallace","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T21:43:51Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:32:53Z","labels":["implementation-type:afk"],"dependencies":[{"issue_id":"agnt-ctx-67191ed9","depends_on_id":"agnt-ctx-c3091eb5","type":"blocks","created_at":"2026-05-27T12:21:31Z","created_by":"Josh Bickley-Wallace","metadata":"{}"}],"dependency_count":1,"dependent_count":0,"comment_count":0}
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- {"_type":"issue","id":"agnt-ctx-76f08f46","title":"Reconsider SKILL.md 100-line limit in write-a-skill","description":"The current write-a-skill guidance hard-caps SKILL.md at 100 lines and splits to REFERENCE.md above that. addyosmani/agent-skills skills are 200-350 lines and their richness (Common Rationalizations, Red Flags, concrete examples, verification checklists) is part of what makes them effective. Consider changing the guidance to: 'prefer under 150 lines; overflow rarely-needed detail into REFERENCE.md'. This bead covers updating the write-a-skill SKILL.md guidance and the AGENTS.md convention.","status":"closed","priority":3,"issue_type":"task","owner":"2077433+jaybeeuu@users.noreply.github.com","created_at":"2026-05-26T21:42:27Z","created_by":"Josh Bickley-Wallace","updated_at":"2026-05-28T18:15:28Z","closed_at":"2026-05-27T06:36:46Z","close_reason":"Superseded by agent-nexus-dal — the 150-line guidance will be encoded in the skill anatomy template and write-a-skill update.","dependency_count":0,"dependent_count":0,"comment_count":0}