@jax-data-science/sci-image-visualizer 0.9.0 → 0.11.0

package/fesm2022/{jax-data-science-sci-image-visualizer-onnx-sam-session-Bkujqg7m.mjs → jax-data-science-sci-image-visualizer-onnx-sam-session-DEDSm_NL.mjs}

@@ -1,10 +1,11 @@
 import { LruCache } from 'napari-js';
 import * as ort from 'onnxruntime-web';
-import { g as getOrtWasmBase, f as fetchModel, r as runEncoder, a as runDecoder } from './jax-data-science-sci-image-visualizer-jax-data-science-sci-image-visualizer-Csxlnq7I.mjs';
+import { g as getOrtWasmBase, f as fetchModel, r as runEncoder, a as runDecoder } from './jax-data-science-sci-image-visualizer-jax-data-science-sci-image-visualizer-BELcx0jv.mjs';
 import '@angular/core';
 import '@angular/common/http';
 import 'rxjs';
 import 'rxjs/operators';
+import 'napari-js/geometry';
 import '@angular/core/rxjs-interop';
 import '@angular/common';
 import '@angular/forms';
@@ -19,9 +20,9 @@ import 'primeng/progressbar';
 import 'primeng/slider';
 import 'primeng/toast';
 import 'primeng/tooltip';
-import 'napari-js/geometry';
 import 'napari-js/colormaps';
 import 'file-saver';
+import 'napari-js/overlays';
 import 'primeng/ripple';
 import 'primeng/toolbar';
 import 'primeng/menu';
@@ -38,7 +39,6 @@ import 'primeng/multiselect';
 import 'image-js';
 import 'buffer';
 import 'openseadragon';
-import 'napari-js/overlays';
 
 /**
  * Request/response bookkeeping for a worker RPC: each call gets an id and a
@@ -235,4 +235,4 @@ class OnnxSamSession {
 }
 
 export { OnnxSamSession };
-//# sourceMappingURL=jax-data-science-sci-image-visualizer-onnx-sam-session-Bkujqg7m.mjs.map
+//# sourceMappingURL=jax-data-science-sci-image-visualizer-onnx-sam-session-DEDSm_NL.mjs.map

package/fesm2022/{jax-data-science-sci-image-visualizer-onnx-sam-session-Bkujqg7m.mjs.map → jax-data-science-sci-image-visualizer-onnx-sam-session-DEDSm_NL.mjs.map}

@@ -1 +1 @@
-{"version":3,"file":"jax-data-science-sci-image-visualizer-onnx-sam-session-Bkujqg7m.mjs","sources":["../../src/lib/toolbar/segmentation/pending-calls.ts","../../src/lib/toolbar/segmentation/onnx-sam-session.ts"],"sourcesContent":["/** A reply from the SAM worker: progress for, or the result of, call `id`. */\nexport interface WorkerReply {\n  id: number;\n  type: string;\n  /** Present on `type: 'progress'` replies. */\n  fraction?: number;\n  /** Present on `type: 'error'` replies. */\n  error?: string;\n  [key: string]: unknown;\n}\n\ninterface Pending {\n  resolve: (reply: WorkerReply) => void;\n  reject: (err: Error) => void;\n  onProgress?: (fraction: number) => void;\n}\n\n/**\n * Request/response bookkeeping for a worker RPC: each call gets an id and a\n * promise that its reply settles. Every exit path (dispose, a worker crash)\n * must {@link rejectAll}, or awaiting callers never reach their `finally` and a\n * tool's busy flag sticks forever (RT-8).\n */\nexport class PendingCalls {\n  private seq = 0;\n  private readonly pending = new Map<number, Pending>();\n\n  /** Calls still awaiting a reply. */\n  get size(): number {\n    return this.pending.size;\n  }\n\n  /** Register a new call; post the message with the returned id. */\n  open(onProgress?: (fraction: number) => void): { id: number; promise: Promise<WorkerReply> } {\n    const id = ++this.seq;\n    const promise = new Promise<WorkerReply>((resolve, reject) => {\n      this.pending.set(id, { resolve, reject, onProgress });\n    });\n    return { id, promise };\n  }\n\n  /** Route a worker reply to its call: progress, error or result. */\n  handle(reply: WorkerReply): void {\n    const p = this.pending.get(reply.id);\n    if (!p) return;\n    if (reply.type === 'progress') {\n      p.onProgress?.(reply.fraction ?? 0);\n      return;\n    }\n    this.pending.delete(reply.id);\n    if (reply.type === 'error') p.reject(new Error(reply.error ?? 'SAM worker error.'));\n    else p.resolve(reply);\n  }\n\n  /** Reject every pending call with `err` and forget them. */\n  rejectAll(err: Error): void {\n    const calls = Array.from(this.pending.values());\n    this.pending.clear();\n    for (const p of calls) p.reject(err);\n  }\n}\n","import { LruCache } from 'napari-js';\nimport * as ort from 'onnxruntime-web';\n\nimport { ISamSession, SamEmbedding, SamMaskResult, SamModelDef, SamPrompt } from '../../contracts/sam.contract';\nimport { fetchModel, runEncoder, runDecoder, type CoreEmbedding } from './sam-onnx-core';\nimport { getOrtWasmBase } from './ort-runtime-config';\nimport { PendingCalls, WorkerReply } from './pending-calls';\n\n/**\n * onnxruntime-web implementation of {@link ISamSession} (jit-ui#90), with two\n * execution modes chosen per model:\n *\n *  - **in-process** (main thread) — for small WASM models flagged `inProcess`\n *    (e.g. micro-sam ViT-T). Fast load + inference with no Web Worker spawn /\n *    second ORT runtime / message round-trips; the brief encode runs on the main\n *    thread (fine for a tiny model).\n *  - **worker** — for WebGPU models (e.g. ViT-B, patho-sam fp16) whose heavy\n *    encode would otherwise freeze the tab. Runs in {@link ./onnx-sam.worker} so\n *    the UI stays responsive (the spinner animates).\n *\n * Both modes share their inference math via {@link ./sam-onnx-core}. Lazy-imported\n * by the SAM tools so onnxruntime-web / the worker never load in unit tests or\n * the initial bundle.\n */\nexport class OnnxSamSession implements ISamSession {\n  private mode: 'inproc' | 'worker' | null = null;\n  private loaded = false;\n  private inputSize = 1024;\n\n  // ── worker mode ──\n  private worker: Worker | null = null;\n  private readonly calls = new PendingCalls();\n\n  // ── in-process mode ──\n  private encoder: ort.InferenceSession | null = null;\n  private decoder: ort.InferenceSession | null = null;\n  private nextToken = 1;\n  /** The few most recently used embeddings, by token (one per recently viewed image). */\n  private readonly embeddings = new LruCache<CoreEmbedding, number>(3);\n\n  async loadModel(model: SamModelDef, onProgress?: (fraction: number) => void): Promise<void> {\n    if (!model.encoderUrl || !model.decoderUrl) {\n      throw new Error(`SAM model \"${model.id}\" has no ONNX URLs configured.`);\n    }\n    this.inputSize = model.inputSize;\n    const hasGpu = typeof navigator !== 'undefined' && 'gpu' in navigator;\n    const eps: string[] = model.encoderProviders ?? (hasGpu ? ['webgpu', 'wasm'] : ['wasm']);\n    const usesWebGpu = eps.includes('webgpu');\n    // WebGPU must run in the worker (else it freezes the main thread); small\n    // WASM models opt into the faster in-process path via `inProcess`.\n    this.mode = !usesWebGpu && model.inProcess ? 'inproc' : 'worker';\n\n    if (this.mode === 'inproc') {\n      ort.env.wasm.wasmPaths = getOrtWasmBase();\n      const encBuf = await fetchModel(model.encoderUrl, onProgress, model.revision);\n      const decBuf = await fetchModel(model.decoderUrl, undefined, model.revision);\n      this.encoder = await ort.InferenceSession.create(encBuf, { executionProviders: eps });\n      this.decoder = await ort.InferenceSession.create(decBuf, { executionProviders: ['wasm'] });\n    } else {\n      await this.call(\n        {\n          type: 'load',\n          encoderUrl: model.encoderUrl,\n          decoderUrl: model.decoderUrl,\n          revision: model.revision,\n          wasmPaths: getOrtWasmBase(),\n          inputSize: model.inputSize,\n          encoderProviders: model.encoderProviders,\n        },\n        [],\n        onProgress,\n      );\n    }\n    this.loaded = true;\n  }\n\n  isLoaded(): boolean {\n    return this.loaded;\n  }\n\n  async embed(image: { data: Uint8ClampedArray; width: number; height: number }): Promise<SamEmbedding> {\n    if (this.mode === 'inproc') {\n      const e = await runEncoder(this.encoder!, image.data, image.width, image.height, this.inputSize);\n      const token = this.nextToken++;\n      this.embeddings.set(token, e);\n      return {\n        data: new Float32Array(0),\n        dims: e.dims,\n        scale: e.scale,\n        imageWidth: e.imageWidth,\n        imageHeight: e.imageHeight,\n        token,\n      };\n    }\n    // worker: transfer the RGBA buffer (callers pass a fresh frame buffer).\n    const buffer = image.data.buffer;\n    const res = await this.call({ type: 'embed', width: image.width, height: image.height, buffer }, [buffer]);\n    return {\n      data: new Float32Array(0),\n      dims: res['dims'] as number[],\n      scale: res['scale'] as number,\n      imageWidth: res['imageWidth'] as number,\n      imageHeight: res['imageHeight'] as number,\n      token: res['token'] as number,\n    };\n  }\n\n  async decode(embedding: SamEmbedding, prompt: SamPrompt): Promise<SamMaskResult> {\n    if (this.mode === 'inproc') {\n      const e = this.embeddings.get(embedding.token as number);\n      if (!e) throw new Error('SAM embedding expired; re-encode the image.');\n      return runDecoder(this.decoder!, e, prompt);\n    }\n    const res = await this.call({ type: 'decode', token: embedding.token, prompt });\n    return {\n      mask: new Uint8Array(res['buffer'] as ArrayBuffer),\n      width: res['width'] as number,\n      height: res['height'] as number,\n      iou: res['iou'] as number,\n    };\n  }\n\n  /** Release the worker / ORT sessions. Calls still in flight reject (RT-8), so\n   *  their callers' `finally` blocks run (e.g. a tool's busy flag clears). */\n  dispose(): void {\n    this.dropWorker(new Error('SAM session disposed'));\n    this.encoder?.release?.();\n    this.decoder?.release?.();\n    this.encoder = this.decoder = null;\n    this.embeddings.clear();\n    this.loaded = false;\n    this.mode = null;\n  }\n\n  // ── worker plumbing ──────────────────────────────────────────────────────\n  private ensureWorker(): Worker {\n    if (this.worker) return this.worker;\n    const worker = new Worker(new URL('./onnx-sam.worker', import.meta.url), { type: 'module' });\n    worker.onmessage = (ev: MessageEvent<WorkerReply>) => this.calls.handle(ev.data);\n    worker.onerror = (ev: ErrorEvent) => {\n      // A crashed worker can't serve the loaded model any more: drop it, so the\n      // next run reloads instead of posting to a dead worker.\n      this.dropWorker(new Error(ev.message || 'SAM worker crashed.'));\n      this.loaded = false;\n      this.mode = null;\n    };\n    this.worker = worker;\n    return worker;\n  }\n\n  /** Terminate the worker (if any) and reject every call still waiting on it. */\n  private dropWorker(err: Error): void {\n    this.worker?.terminate();\n    this.worker = null;\n    this.calls.rejectAll(err);\n  }\n\n  private call(\n    msg: Record<string, unknown>,\n    transfer: Transferable[] = [],\n    onProgress?: (f: number) => void,\n  ): Promise<WorkerReply> {\n    const worker = this.ensureWorker();\n    const { id, promise } = this.calls.open(onProgress);\n    worker.postMessage({ ...msg, id }, transfer);\n    return promise;\n  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Every exit path (dispose, a worker crash)\n * must {@link rejectAll}, or awaiting callers never reach their `finally` and a\n * tool's busy flag sticks forever (RT-8).\n */\nexport class PendingCalls {\n  private seq = 0;\n  private readonly pending = new Map<number, Pending>();\n\n  /** Calls still awaiting a reply. */\n  get size(): number {\n    return this.pending.size;\n  }\n\n  /** Register a new call; post the message with the returned id. */\n  open(onProgress?: (fraction: number) => void): { id: number; promise: Promise<WorkerReply> } {\n    const id = ++this.seq;\n    const promise = new Promise<WorkerReply>((resolve, reject) => {\n      this.pending.set(id, { resolve, reject, onProgress });\n    });\n    return { id, promise };\n  }\n\n  /** Route a worker reply to its call: progress, error or result. */\n  handle(reply: WorkerReply): void {\n    const p = this.pending.get(reply.id);\n    if (!p) return;\n    if (reply.type === 'progress') {\n      p.onProgress?.(reply.fraction ?? 0);\n      return;\n    }\n    this.pending.delete(reply.id);\n    if (reply.type === 'error') p.reject(new Error(reply.error ?? 'SAM worker error.'));\n    else p.resolve(reply);\n  }\n\n  /** Reject every pending call with `err` and forget them. */\n  rejectAll(err: Error): void {\n    const calls = Array.from(this.pending.values());\n    this.pending.clear();\n    for (const p of calls) p.reject(err);\n  }\n}\n","import { LruCache } from 'napari-js';\nimport * as ort from 'onnxruntime-web';\n\nimport { ISamSession, SamEmbedding, SamMaskResult, SamModelDef, SamPrompt } from '../../contracts/sam.contract';\nimport { fetchModel, runEncoder, runDecoder, type CoreEmbedding } from './sam-onnx-core';\nimport { getOrtWasmBase } from './ort-runtime-config';\nimport { PendingCalls, WorkerReply } from './pending-calls';\n\n/**\n * onnxruntime-web implementation of {@link ISamSession} (jit-ui#90), with two\n * execution modes chosen per model:\n *\n *  - **in-process** (main thread) — for small WASM models flagged `inProcess`\n *    (e.g. micro-sam ViT-T). Fast load + inference with no Web Worker spawn /\n *    second ORT runtime / message round-trips; the brief encode runs on the main\n *    thread (fine for a tiny model).\n *  - **worker** — for WebGPU models (e.g. ViT-B, patho-sam fp16) whose heavy\n *    encode would otherwise freeze the tab. Runs in {@link ./onnx-sam.worker} so\n *    the UI stays responsive (the spinner animates).\n *\n * Both modes share their inference math via {@link ./sam-onnx-core}. Lazy-imported\n * by the SAM tools so onnxruntime-web / the worker never load in unit tests or\n * the initial bundle.\n */\nexport class OnnxSamSession implements ISamSession {\n  private mode: 'inproc' | 'worker' | null = null;\n  private loaded = false;\n  private inputSize = 1024;\n\n  // ── worker mode ──\n  private worker: Worker | null = null;\n  private readonly calls = new PendingCalls();\n\n  // ── in-process mode ──\n  private encoder: ort.InferenceSession | null = null;\n  private decoder: ort.InferenceSession | null = null;\n  private nextToken = 1;\n  /** The few most recently used embeddings, by token (one per recently viewed image). */\n  private readonly embeddings = new LruCache<CoreEmbedding, number>(3);\n\n  async loadModel(model: SamModelDef, onProgress?: (fraction: number) => void): Promise<void> {\n    if (!model.encoderUrl || !model.decoderUrl) {\n      throw new Error(`SAM model \"${model.id}\" has no ONNX URLs configured.`);\n    }\n    this.inputSize = model.inputSize;\n    const hasGpu = typeof navigator !== 'undefined' && 'gpu' in navigator;\n    const eps: string[] = model.encoderProviders ?? (hasGpu ? ['webgpu', 'wasm'] : ['wasm']);\n    const usesWebGpu = eps.includes('webgpu');\n    // WebGPU must run in the worker (else it freezes the main thread); small\n    // WASM models opt into the faster in-process path via `inProcess`.\n    this.mode = !usesWebGpu && model.inProcess ? 'inproc' : 'worker';\n\n    if (this.mode === 'inproc') {\n      ort.env.wasm.wasmPaths = getOrtWasmBase();\n      const encBuf = await fetchModel(model.encoderUrl, onProgress, model.revision);\n      const decBuf = await fetchModel(model.decoderUrl, undefined, model.revision);\n      this.encoder = await ort.InferenceSession.create(encBuf, { executionProviders: eps });\n      this.decoder = await ort.InferenceSession.create(decBuf, { executionProviders: ['wasm'] });\n    } else {\n      await this.call(\n        {\n          type: 'load',\n          encoderUrl: model.encoderUrl,\n          decoderUrl: model.decoderUrl,\n          revision: model.revision,\n          wasmPaths: getOrtWasmBase(),\n          inputSize: model.inputSize,\n          encoderProviders: model.encoderProviders,\n        },\n        [],\n        onProgress,\n      );\n    }\n    this.loaded = true;\n  }\n\n  isLoaded(): boolean {\n    return this.loaded;\n  }\n\n  async embed(image: { data: Uint8ClampedArray; width: number; height: number }): Promise<SamEmbedding> {\n    if (this.mode === 'inproc') {\n      const e = await runEncoder(this.encoder!, image.data, image.width, image.height, this.inputSize);\n      const token = this.nextToken++;\n      this.embeddings.set(token, e);\n      return {\n        data: new Float32Array(0),\n        dims: e.dims,\n        scale: e.scale,\n        imageWidth: e.imageWidth,\n        imageHeight: e.imageHeight,\n        token,\n      };\n    }\n    // worker: transfer the RGBA buffer (callers pass a fresh frame buffer).\n    const buffer = image.data.buffer;\n    const res = await this.call({ type: 'embed', width: image.width, height: image.height, buffer }, [buffer]);\n    return {\n      data: new Float32Array(0),\n      dims: res['dims'] as number[],\n      scale: res['scale'] as number,\n      imageWidth: res['imageWidth'] as number,\n      imageHeight: res['imageHeight'] as number,\n      token: res['token'] as number,\n    };\n  }\n\n  async decode(embedding: SamEmbedding, prompt: SamPrompt): Promise<SamMaskResult> {\n    if (this.mode === 'inproc') {\n      const e = this.embeddings.get(embedding.token as number);\n      if (!e) throw new Error('SAM embedding expired; re-encode the image.');\n      return runDecoder(this.decoder!, e, prompt);\n    }\n    const res = await this.call({ type: 'decode', token: embedding.token, prompt });\n    return {\n      mask: new Uint8Array(res['buffer'] as ArrayBuffer),\n      width: res['width'] as number,\n      height: res['height'] as number,\n      iou: res['iou'] as number,\n    };\n  }\n\n  /** Release the worker / ORT sessions. Calls still in flight reject (RT-8), so\n   *  their callers' `finally` blocks run (e.g. a tool's busy flag clears). */\n  dispose(): void {\n    this.dropWorker(new Error('SAM session disposed'));\n    this.encoder?.release?.();\n    this.decoder?.release?.();\n    this.encoder = this.decoder = null;\n    this.embeddings.clear();\n    this.loaded = false;\n    this.mode = null;\n  }\n\n  // ── worker plumbing ──────────────────────────────────────────────────────\n  private ensureWorker(): Worker {\n    if (this.worker) return this.worker;\n    const worker = new Worker(new URL('./onnx-sam.worker', import.meta.url), { type: 'module' });\n    worker.onmessage = (ev: MessageEvent<WorkerReply>) => this.calls.handle(ev.data);\n    worker.onerror = (ev: ErrorEvent) => {\n      // A crashed worker can't serve the loaded model any more: drop it, so the\n      // next run reloads instead of posting to a dead worker.\n      this.dropWorker(new Error(ev.message || 'SAM worker crashed.'));\n      this.loaded = false;\n      this.mode = null;\n    };\n    this.worker = worker;\n    return worker;\n  }\n\n  /** Terminate the worker (if any) and reject every call still waiting on it. */\n  private dropWorker(err: Error): void {\n    this.worker?.terminate();\n    this.worker = null;\n    this.calls.rejectAll(err);\n  }\n\n  private call(\n    msg: Record<string, unknown>,\n    transfer: Transferable[] = [],\n    onProgress?: (f: number) => void,\n  ): Promise<WorkerReply> {\n    const worker = this.ensureWorker();\n    const { id, promise } = this.calls.open(onProgress);\n    worker.postMessage({ ...msg, id }, transfer);\n    return promise;\n  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package/fesm2022/jax-data-science-sci-image-visualizer-region-source-worker-CAqBjM5L.mjs

@@ -0,0 +1,12 @@
+/**
+ * Factory for the region-source Web Worker, isolated in its own module so the `import.meta.url`
+ * reference — which the bundler needs in order to locate the worker — is never pulled into the
+ * ts-jest CommonJS compile of anything that uses it. Same arrangement as
+ * `workers/spatial-math-worker.ts`.
+ */
+function createRegionSourceWorker() {
+    return new Worker(new URL('./region-source.worker', import.meta.url), { type: 'module' });
+}
+
+export { createRegionSourceWorker };
+//# sourceMappingURL=jax-data-science-sci-image-visualizer-region-source-worker-CAqBjM5L.mjs.map

package/fesm2022/jax-data-science-sci-image-visualizer-region-source-worker-CAqBjM5L.mjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"jax-data-science-sci-image-visualizer-region-source-worker-CAqBjM5L.mjs","sources":["../../src/lib/region-source/region-source-worker.ts"],"sourcesContent":["/**\n * Factory for the region-source Web Worker, isolated in its own module so the `import.meta.url`\n * reference — which the bundler needs in order to locate the worker — is never pulled into the\n * ts-jest CommonJS compile of anything that uses it. Same arrangement as\n * `workers/spatial-math-worker.ts`.\n */\nexport function createRegionSourceWorker(): Worker {\n  return new Worker(new URL('./region-source.worker', import.meta.url), { type: 'module' });\n}\n"],"names":[],"mappings":"AAAA;;;;;AAKG;SACa,wBAAwB,GAAA;IACtC,OAAO,IAAI,MAAM,CAAC,IAAI,GAAG,CAAC,wBAAwB,EAAE,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,IAAI,EAAE,QAAQ,EAAE,CAAC;AAC3F;;;;"}

package/fesm2022/jax-data-science-sci-image-visualizer.mjs

@@ -1,10 +1,11 @@
-export { A as ALL_GENES, b as ALL_TOOLBAR_TOOLS, C as CANVAS_TOOL_IDS, c as CELL_SEGMENTER, d as CHANNEL_HISTOGRAM_API, e as CellposeSegmenterService, h as ChannelHistogramComponent, D as DEFAULT_CATEGORICAL_PALETTE, i as DEFAULT_FALLBACK_PALETTE, j as DEFAULT_MUTED_OPACITY, k as DEFAULT_SAM_MODEL_ID, l as DEFAULT_SPATIAL_VIEW, H as HexColorPickerComponent, I as IMAGE_STATE_PORT, m as INSTANCE_SEGMENTER, n as ImageConverterService, L as LUT_COLORS, M as MISSING_COLOR, o as MultiPolygon, N as NAPARI_DECIMATE_OPTIONS, p as NAPARI_DEFAULT_DECIMATE, q as NO_CATEGORY, s as NO_OBSERVATION, P as PLOT_MODE_CONTEXT, t as PLOT_MODE_SESSION, u as PLOT_TYPE_CONTRIBUTIONS, v as PLOT_TYPE_DESCRIPTORS, w as PREFERENCES_PORT, x as PlotType, y as Polygon, z as ProcessingImage, R as REGION_EDITOR_API, B as REGION_IO_PORT, E as Rectangle, F as Region, G as RegionEditorComponent, J as RoutingVisualizerService, S as SAM_MODELS, K as SEMANTIC_SEGMENTER, O as SPATIAL_DATA_PORT, Q as SPATIAL_WIRE_VERSION, T as ShapeSelection, U as SpatialChartsComponent, V as SpatialControlsComponent, W as SpatialDataHttpService, X as SpatialSelectionStore, Y as SupersededError, Z as TILE_ACCESS_PORT, _ as TOOLBAR_TOOLS, $ as VISUALIZER, a0 as VIZ_ALERT_TOAST_KEY, a1 as VIZ_CONFIG, a2 as VIZ_TOAST_KEY, a3 as ViewerFeature, a4 as VisualizationModule, a5 as VisualizerComponent, a6 as assertManifestVersion, a7 as benefitsFromGrouping, a8 as buildOmicsTraces, a9 as capabilitiesOf, aa as clearSamModelCache, ab as contrastWindow, ac as contributedPlotTypeOption, ad as countMask, ae as cropImage, af as datasetFromManifest, ag as decodeColumn, ah as decodeCoords, ai as decodeFeatureVector, aj as decodePolygons, ak as decodeRadius, al as defaultPresetSet, am as dialogToolContributions, an as emptySelection, ao as encodeCategorical, ap as encodeContinuous, aq as findColumnMeta, ar as getDefaultSamModelId, g as getOrtWasmBase, as as getPlotTypeDescriptor, at as getSamModel, au as hydrateBounds, av as isBuiltinPlotType, aw as isCanvasToolId, ax as isCategoricalColumn, ay as isContinuousColumn, az as isDialogToolContribution, aA as isEmptyPresetSet, aB as isLittleEndian, aC as isNapari3d, aD as isNapariIsosurface, aE as isNapariScatter, aF as isNapariScatter3d, aG as isNapariSurface, aH as isNapariVolume, aI as isSamModelReady, aJ as isSpatialOmics, aK as isSpatialOmics3d, aL as isThreeDimensional, aM as lutFor, aN as markerDiameters, aO as maskToIndices, aP as mutedFromSelection, aQ as omicsLayout, aR as parsePresetSet, aS as pointInRing, aT as provideVisualization, aU as rendererOwnsWheel, aV as resolveCategoryColors, aW as selectByCategory, aX as selectInRegions, aY as setDefaultSamModel, aZ as setOrtWasmBase, a_ as setSamModelUrls, a$ as sortToolContributions, b0 as visibleToolContributions } from './jax-data-science-sci-image-visualizer-jax-data-science-sci-image-visualizer-Csxlnq7I.mjs';
+export { A as ALL_GENES, b as ALL_TOOLBAR_TOOLS, C as CANVAS_TOOL_IDS, c as CELL_SEGMENTER, d as CHANNEL_HISTOGRAM_API, e as CellposeSegmenterService, h as ChannelHistogramComponent, D as DEFAULT_CATEGORICAL_PALETTE, i as DEFAULT_FALLBACK_PALETTE, j as DEFAULT_MUTED_OPACITY, k as DEFAULT_SAM_MODEL_ID, l as DEFAULT_SPATIAL_VIEW, H as HexColorPickerComponent, I as IMAGE_STATE_PORT, m as INSTANCE_SEGMENTER, n as ImageConverterService, L as LUT_COLORS, M as MISSING_COLOR, o as MultiPolygon, N as NAPARI_DECIMATE_OPTIONS, p as NAPARI_DEFAULT_DECIMATE, q as NO_CATEGORY, s as NO_OBSERVATION, P as PLOT_MODE_CONTEXT, t as PLOT_MODE_SESSION, u as PLOT_TYPE_CONTRIBUTIONS, v as PLOT_TYPE_DESCRIPTORS, w as PREFERENCES_PORT, x as PlotType, y as Polygon, z as ProcessingImage, R as REGION_EDITOR_API, B as REGION_IO_PORT, E as REGION_SOURCE_MIN_CHARS, F as Rectangle, G as Region, J as RegionEditorComponent, K as RoutingVisualizerService, S as SAM_MODELS, O as SEMANTIC_SEGMENTER, Q as SPATIAL_DATA_PORT, T as SPATIAL_WIRE_VERSION, U as ShapeSelection, V as SpatialChartsComponent, W as SpatialControlsComponent, X as SpatialDataHttpService, Y as SpatialSelectionStore, Z as SupersededError, _ as TILE_ACCESS_PORT, $ as TOOLBAR_TOOLS, a0 as VISUALIZER, a1 as VIZ_ALERT_TOAST_KEY, a2 as VIZ_CONFIG, a3 as VIZ_TOAST_KEY, a4 as ViewerFeature, a5 as VisualizationModule, a6 as VisualizerComponent, a7 as assertManifestVersion, a8 as benefitsFromGrouping, a9 as buildOmicsTraces, aa as capabilitiesOf, ab as clearSamModelCache, ac as contrastWindow, ad as contributedPlotTypeOption, ae as countMask, af as cropImage, ag as datasetFromManifest, ah as decodeColumn, ai as decodeCoords, aj as decodeFeatureVector, ak as decodePolygons, al as decodeRadius, am as defaultPresetSet, an as dialogToolContributions, ao as emptySelection, ap as encodeCategorical, aq as encodeContinuous, ar as findColumnMeta, as as getDefaultSamModelId, g as getOrtWasmBase, at as getPlotTypeDescriptor, au as getSamModel, av as hydrateBounds, aw as importFile, ax as isBuiltinPlotType, ay as isCanvasToolId, az as isCategoricalColumn, aA as isContinuousColumn, aB as isDialogToolContribution, aC as isEmptyPresetSet, aD as isLabelVolumeName, aE as isLittleEndian, aF as isNapari3d, aG as isNapariIsosurface, aH as isNapariScatter, aI as isNapariScatter3d, aJ as isNapariSurface, aK as isNapariVolume, aL as isSamModelReady, aM as isSpatialOmics, aN as isSpatialOmics3d, aO as isThreeDimensional, aP as labelClasses, aQ as labelSliceGeoJson, aR as lutFor, aS as markerDiameters, aT as maskToIndices, aU as mutedFromSelection, aV as omicsLayout, aW as openGeoJsonRegionSource, aX as openHttpRegionSource, aY as parsePresetSet, aZ as planRegionImport, a_ as pointInRing, a$ as provideVisualization, b0 as readLabelVolume, b1 as rendererOwnsWheel, b2 as resolveCategoryColors, b3 as selectByCategory, b4 as selectInRegions, b5 as setDefaultSamModel, b6 as setOrtWasmBase, b7 as setSamModelUrls, b8 as sortToolContributions, b9 as visibleToolContributions } from './jax-data-science-sci-image-visualizer-jax-data-science-sci-image-visualizer-BELcx0jv.mjs';
 import '@angular/core';
 import '@angular/common/http';
 import 'napari-js';
 import 'rxjs';
 import 'rxjs/operators';
 import 'onnxruntime-web';
+import 'napari-js/geometry';
 import '@angular/core/rxjs-interop';
 import '@angular/common';
 import '@angular/forms';
@@ -19,9 +20,9 @@ import 'primeng/progressbar';
 import 'primeng/slider';
 import 'primeng/toast';
 import 'primeng/tooltip';
-import 'napari-js/geometry';
 import 'napari-js/colormaps';
 import 'file-saver';
+import 'napari-js/overlays';
 import 'primeng/ripple';
 import 'primeng/toolbar';
 import 'primeng/menu';
@@ -38,5 +39,4 @@ import 'primeng/multiselect';
 import 'image-js';
 import 'buffer';
 import 'openseadragon';
-import 'napari-js/overlays';
 //# sourceMappingURL=jax-data-science-sci-image-visualizer.mjs.map