@jax-data-science/sci-image-visualizer 0.8.3 → 0.9.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +201 -460
- package/esm2022/index.mjs +28 -15
- package/esm2022/lib/channel-histogram/channel-histogram.component.mjs +163 -91
- package/esm2022/lib/contracts/capabilities.contract.mjs +4 -3
- package/esm2022/lib/contracts/cell-segmenter.contract.mjs +1 -1
- package/esm2022/lib/contracts/channel-histogram-api.contract.mjs +5 -1
- package/esm2022/lib/contracts/color.mjs +60 -0
- package/esm2022/lib/contracts/colormap-lut.mjs +213 -57
- package/esm2022/lib/contracts/coordinate-transform.contract.mjs +1 -1
- package/esm2022/lib/contracts/display-types.mjs +11 -1
- package/esm2022/lib/contracts/instance-segmenter.contract.mjs +1 -1
- package/esm2022/lib/contracts/intensity.mjs +48 -5
- package/esm2022/lib/contracts/plot-type-contribution.contract.mjs +1 -1
- package/esm2022/lib/contracts/plot-type.mjs +134 -17
- package/esm2022/lib/contracts/ports/image-state.port.mjs +4 -1
- package/esm2022/lib/contracts/ports/preferences.port.mjs +5 -1
- package/esm2022/lib/contracts/ports/region-io.port.mjs +2 -1
- package/esm2022/lib/contracts/ports/spatial-data.port.mjs +5 -1
- package/esm2022/lib/contracts/ports/tile-access.port.mjs +2 -1
- package/esm2022/lib/contracts/region-editor-api.contract.mjs +1 -1
- package/esm2022/lib/contracts/region-overlay.contract.mjs +1 -1
- package/esm2022/lib/contracts/sam.contract.mjs +1 -1
- package/esm2022/lib/contracts/semantic-segmenter.contract.mjs +1 -1
- package/esm2022/lib/contracts/spatial-dataset.contract.mjs +3 -1
- package/esm2022/lib/contracts/toolbar-tool.contract.mjs +6 -4
- package/esm2022/lib/contracts/visualizer.contract.mjs +1 -1
- package/esm2022/lib/contracts/viz-config.mjs +2 -1
- package/esm2022/lib/geometry/contour.mjs +63 -0
- package/esm2022/lib/geometry/raster.mjs +98 -0
- package/esm2022/lib/geometry/ring.mjs +201 -0
- package/esm2022/lib/hex-color-picker/hex-color-picker.component.mjs +202 -102
- package/esm2022/lib/implementations/base-store-visualizer.mjs +201 -48
- package/esm2022/lib/implementations/napari-js/napari-axes-gizmo.mjs +65 -0
- package/esm2022/lib/implementations/napari-js/napari-display-state.mjs +136 -0
- package/esm2022/lib/implementations/napari-js/napari-helpers.mjs +199 -0
- package/esm2022/lib/implementations/napari-js/napari-image-2d-scene.mjs +602 -0
- package/esm2022/lib/implementations/napari-js/napari-loading-badge.mjs +3 -4
- package/esm2022/lib/implementations/napari-js/napari-loading-state.mjs +66 -0
- package/esm2022/lib/implementations/napari-js/napari-region-overlay.mjs +157 -591
- package/esm2022/lib/implementations/napari-js/napari-scene.mjs +2 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-2d-scene.mjs +614 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-3d-scene.mjs +769 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-encoding.mjs +199 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-hover.mjs +263 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-scene.mjs +159 -0
- package/esm2022/lib/implementations/napari-js/napari-spatial-tiles.mjs +106 -1408
- package/esm2022/lib/implementations/napari-js/napari-spatial-tooltip.mjs +2 -2
- package/esm2022/lib/implementations/napari-js/napari-surface-scene.mjs +271 -0
- package/esm2022/lib/implementations/napari-js/napari-tile-client.mjs +562 -0
- package/esm2022/lib/implementations/napari-js/napari-tool-bridge.mjs +344 -0
- package/esm2022/lib/implementations/napari-js/napari-visualizer.service.mjs +358 -4218
- package/esm2022/lib/implementations/napari-js/napari-volume-scene.mjs +439 -0
- package/esm2022/lib/implementations/napari-js/napari-volume-z-handle.mjs +6 -6
- package/esm2022/lib/implementations/napari-js/region-overlay/overlay-projection.mjs +96 -0
- package/esm2022/lib/implementations/napari-js/region-overlay/region-edit.mjs +35 -0
- package/esm2022/lib/implementations/napari-js/region-overlay/region-svg-renderer.mjs +182 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/categorical-lookup.mjs +30 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/cell-layers.mjs +274 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/density-layer.mjs +144 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/layer-groups.mjs +165 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/plan-context.mjs +78 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/transcript-hover.mjs +182 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/transcript-jobs.mjs +369 -0
- package/esm2022/lib/implementations/napari-js/spatial-tiles/transcript-layers.mjs +306 -0
- package/esm2022/lib/implementations/osd/display-pipeline.mjs +102 -40
- package/esm2022/lib/implementations/osd/histogram-sampler.mjs +56 -31
- package/esm2022/lib/implementations/osd/openseadragon-viewer-options.mjs +128 -0
- package/esm2022/lib/implementations/osd/openseadragon-visualizer.service.mjs +333 -1685
- package/esm2022/lib/implementations/osd/osd-coordinate-transform.mjs +1 -1
- package/esm2022/lib/implementations/osd/osd-coords.mjs +5 -6
- package/esm2022/lib/implementations/osd/osd-export.mjs +122 -0
- package/esm2022/lib/implementations/osd/osd-lib.mjs +15 -1
- package/esm2022/lib/implementations/osd/osd-navigator-chrome.mjs +205 -0
- package/esm2022/lib/implementations/osd/osd-pixel-readback.mjs +68 -0
- package/esm2022/lib/implementations/osd/osd-region-overlay-draw.mjs +153 -0
- package/esm2022/lib/implementations/osd/osd-region-overlay.mjs +185 -718
- package/esm2022/lib/implementations/osd/osd-scale-bar.mjs +52 -60
- package/esm2022/lib/implementations/osd/osd-tile-source.mjs +105 -0
- package/esm2022/lib/implementations/osd/osd-viewer-like.mjs +2 -0
- package/esm2022/lib/implementations/osd/osd-viewer-mount.mjs +44 -0
- package/esm2022/lib/implementations/osd/osd-viewport.mjs +184 -0
- package/esm2022/lib/implementations/osd/osd-zoom.mjs +7 -1
- package/esm2022/lib/implementations/osd/simple-source.mjs +395 -0
- package/esm2022/lib/implementations/osd/slice-cache.mjs +53 -48
- package/esm2022/lib/implementations/osd/tile-client.mjs +32 -11
- package/esm2022/lib/implementations/osd/tile-recolor.mjs +330 -0
- package/esm2022/lib/implementations/plotly/omics-trace-builders.mjs +161 -73
- package/esm2022/lib/implementations/plotly/plotly-coordinate-transform.mjs +1 -1
- package/esm2022/lib/implementations/plotly/plotly-image-loader.mjs +112 -0
- package/esm2022/lib/implementations/plotly/plotly-image-recolor.mjs +178 -0
- package/esm2022/lib/implementations/plotly/plotly-intensity-inset.mjs +33 -0
- package/esm2022/lib/implementations/plotly/plotly-isosurface-controls.mjs +83 -0
- package/esm2022/lib/implementations/plotly/plotly-layouts.mjs +121 -0
- package/esm2022/lib/implementations/plotly/plotly-readback.mjs +117 -0
- package/esm2022/lib/implementations/plotly/plotly-region-overlay.mjs +19 -10
- package/esm2022/lib/implementations/plotly/plotly-shape-projection.mjs +223 -0
- package/esm2022/lib/implementations/plotly/plotly-trace-builders.mjs +79 -19
- package/esm2022/lib/implementations/plotly/plotly-zoom-controller.mjs +223 -0
- package/esm2022/lib/implementations/plotly/plotly.service.mjs +439 -1655
- package/esm2022/lib/implementations/region-centroids.mjs +47 -0
- package/esm2022/lib/implementations/simple-slice-access.service.mjs +22 -12
- package/esm2022/lib/implementations/spatial-data-http/spatial-data-http.service.mjs +172 -92
- package/esm2022/lib/implementations/spatial-data-http/spatial-wire.mjs +103 -22
- package/esm2022/lib/implementations/tile-server/index.mjs +6 -0
- package/esm2022/lib/implementations/tile-server/native-histogram.mjs +30 -0
- package/esm2022/lib/implementations/tile-server/poll-descriptor.mjs +65 -0
- package/esm2022/lib/implementations/tile-server/tile-protocol.mjs +42 -0
- package/esm2022/lib/implementations/tile-server/transport.mjs +135 -0
- package/esm2022/lib/intensity/intensity-profile.mjs +107 -0
- package/esm2022/lib/intensity/intensity-profile.service.mjs +223 -0
- package/esm2022/lib/intensity-inset/intensity-inset.component.mjs +133 -0
- package/esm2022/lib/models/bezier.mjs +1 -11
- package/esm2022/lib/models/class-preset.mjs +41 -3
- package/esm2022/lib/models/geometry.mjs +27 -164
- package/esm2022/lib/models/polygon-edit.mjs +254 -0
- package/esm2022/lib/models/polygon-factory.mjs +118 -0
- package/esm2022/lib/models/region-clone.mjs +68 -0
- package/esm2022/lib/models/region-geojson.mjs +373 -0
- package/esm2022/lib/models/region.mjs +34 -33
- package/esm2022/lib/models/shape.mjs +18 -16
- package/esm2022/lib/plot-mode/contribution-host.mjs +297 -0
- package/esm2022/lib/plot-mode/plot-mode-controller.mjs +9 -6
- package/esm2022/lib/plot-mode/plot-type-menu.mjs +85 -0
- package/esm2022/lib/plot-mode/tool-params-model.mjs +87 -0
- package/esm2022/lib/plot.utilities.mjs +296 -473
- package/esm2022/lib/processing/image-crop.mjs +1 -1
- package/esm2022/lib/processing/processing-image.mjs +28 -15
- package/esm2022/lib/provide-visualization.mjs +40 -14
- package/esm2022/lib/region-editor/classes-panel/classes-panel.component.mjs +99 -0
- package/esm2022/lib/region-editor/file-stem.mjs +13 -0
- package/esm2022/lib/region-editor/manage-classes-dialog/manage-classes-dialog.component.mjs +118 -0
- package/esm2022/lib/region-editor/mask-export.service.mjs +98 -0
- package/esm2022/lib/region-editor/mask-raster.mjs +11 -5
- package/esm2022/lib/region-editor/region-color-dialog/region-color-dialog.component.mjs +56 -0
- package/esm2022/lib/region-editor/region-editor-help/region-editor-help.component.mjs +28 -0
- package/esm2022/lib/region-editor/region-editor.component.mjs +402 -651
- package/esm2022/lib/region-editor/region-metrics.mjs +68 -0
- package/esm2022/lib/region-editor/region-persistence.service.mjs +134 -0
- package/esm2022/lib/region-editor/region-table/region-table.component.mjs +153 -0
- package/esm2022/lib/region-editor/save-mask-dialog/save-mask-dialog.component.mjs +91 -0
- package/esm2022/lib/region-editor/save-regions-dialog/save-regions-dialog.component.mjs +92 -0
- package/esm2022/lib/region-ops.service.mjs +28 -70
- package/esm2022/lib/region-overlay/region-geometry.mjs +360 -0
- package/esm2022/lib/region-overlay/region-hit-test.mjs +103 -0
- package/esm2022/lib/region-overlay/svg-region-renderer.mjs +228 -0
- package/esm2022/lib/render-orchestrator.mjs +14 -11
- package/esm2022/lib/render-session.mjs +207 -0
- package/esm2022/lib/routing-visualizer.service.mjs +459 -411
- package/esm2022/lib/spatial/density-raster.mjs +14 -0
- package/esm2022/lib/spatial/embedding-compute-coordinator.mjs +239 -0
- package/esm2022/lib/spatial/embedding-compute.mjs +43 -10
- package/esm2022/lib/spatial/gene-search.mjs +1 -1
- package/esm2022/lib/spatial/glyphs.mjs +97 -0
- package/esm2022/lib/spatial/lod.mjs +187 -0
- package/esm2022/lib/spatial/spatial-controls.facade.mjs +200 -0
- package/esm2022/lib/spatial/spatial-density.mjs +25 -16
- package/esm2022/lib/spatial/spatial-encoding.mjs +26 -82
- package/esm2022/lib/spatial/spatial-expression.mjs +43 -42
- package/esm2022/lib/spatial/spatial-framing.mjs +1 -1
- package/esm2022/lib/spatial/spatial-heatmap.mjs +6 -3
- package/esm2022/lib/spatial/spatial-hover.mjs +5 -33
- package/esm2022/lib/spatial/spatial-panel-model.mjs +282 -0
- package/esm2022/lib/spatial/spatial-sections.mjs +1 -1
- package/esm2022/lib/spatial/spatial-selection.mjs +33 -46
- package/esm2022/lib/spatial/spatial-tile-merge.mjs +219 -0
- package/esm2022/lib/spatial/spatial-tiles.mjs +12 -648
- package/esm2022/lib/spatial/spatial-volume-image.mjs +2 -4
- package/esm2022/lib/spatial/stats.mjs +71 -0
- package/esm2022/lib/spatial/transcript-grouping.mjs +307 -0
- package/esm2022/lib/spatial-controls/spatial-cells-panel/spatial-cells-panel.component.mjs +150 -0
- package/esm2022/lib/spatial-controls/spatial-charts/chart-data-model.mjs +309 -0
- package/esm2022/lib/spatial-controls/spatial-charts/chart-help.mjs +145 -0
- package/esm2022/lib/spatial-controls/spatial-charts/plotly-chart-host.mjs +158 -0
- package/esm2022/lib/spatial-controls/spatial-charts/spatial-chart-window/spatial-chart-window.component.mjs +47 -0
- package/esm2022/lib/spatial-controls/spatial-charts/spatial-charts.component.mjs +297 -802
- package/esm2022/lib/spatial-controls/spatial-charts/spatial-embedding-controls/spatial-embedding-controls.component.mjs +89 -0
- package/esm2022/lib/spatial-controls/spatial-charts/spatial-heatmap-controls/spatial-heatmap-controls.component.mjs +52 -0
- package/esm2022/lib/spatial-controls/spatial-controls.component.mjs +143 -1238
- package/esm2022/lib/spatial-controls/spatial-gene-picker.mjs +153 -0
- package/esm2022/lib/spatial-controls/spatial-gene-tree/spatial-gene-tree.component.mjs +241 -0
- package/esm2022/lib/spatial-controls/spatial-groups-panel/spatial-groups-panel.component.mjs +193 -0
- package/esm2022/lib/spatial-controls/spatial-key/spatial-key.component.mjs +132 -0
- package/esm2022/lib/spatial-controls/spatial-key/spatial-key.model.mjs +67 -0
- package/esm2022/lib/spatial-controls/spatial-marker-genes-form/spatial-marker-genes-form.component.mjs +147 -0
- package/esm2022/lib/spatial-controls/spatial-observations-panel/spatial-observations-panel.component.mjs +300 -0
- package/esm2022/lib/spatial-controls/spatial-transcripts-panel/spatial-transcripts-panel.component.mjs +370 -0
- package/esm2022/lib/store/class-color.util.mjs +46 -3
- package/esm2022/lib/store/region-history.mjs +146 -0
- package/esm2022/lib/store/region-scope-cache.mjs +140 -0
- package/esm2022/lib/store/region-selection.mjs +82 -0
- package/esm2022/lib/store/region-store.service.mjs +279 -675
- package/esm2022/lib/store/spatial-selection.service.mjs +2 -2
- package/esm2022/lib/store/visualizer-store.service.mjs +49 -71
- package/esm2022/lib/toast-outlets.mjs +5 -4
- package/esm2022/lib/toolbar/brush/brush-tool.service.mjs +92 -434
- package/esm2022/lib/toolbar/canvas-tools.mjs +20 -0
- package/esm2022/lib/toolbar/crop/slide-crop.mjs +26 -42
- package/esm2022/lib/toolbar/plot-type-selector/plot-type-selector.component.mjs +85 -0
- package/esm2022/lib/toolbar/region-tools/region-tool-buttons.mjs +74 -0
- package/esm2022/lib/toolbar/region-tools/region-tools.component.mjs +114 -0
- package/esm2022/lib/toolbar/segmentation/cell-segment-tool.service.mjs +74 -78
- package/esm2022/lib/toolbar/segmentation/cellpose-segmenter.service.mjs +50 -8
- package/esm2022/lib/toolbar/segmentation/onnx-sam-session.mjs +61 -42
- package/esm2022/lib/toolbar/segmentation/pending-calls.mjs +47 -0
- package/esm2022/lib/toolbar/segmentation/sam-model-registry.mjs +12 -4
- package/esm2022/lib/toolbar/segmentation/sam-onnx-core.mjs +70 -14
- package/esm2022/lib/toolbar/segmentation/sam-point-tool.service.mjs +135 -172
- package/esm2022/lib/toolbar/segmentation/sam-prompt.mjs +9 -90
- package/esm2022/lib/toolbar/segmentation/sam-session.service.mjs +183 -0
- package/esm2022/lib/toolbar/segmentation/sam-tool.service.mjs +95 -150
- package/esm2022/lib/toolbar/segmentation/segmentation-commit.mjs +12 -0
- package/esm2022/lib/toolbar/segmentation/segmentation-runner.mjs +108 -0
- package/esm2022/lib/toolbar/segmentation-tools/segmentation-tools.component.mjs +155 -0
- package/esm2022/lib/toolbar/stack-controls/stack-controls.component.mjs +81 -0
- package/esm2022/lib/toolbar/tool-kit/async-tool-status.mjs +37 -0
- package/esm2022/lib/toolbar/tool-kit/canvas-tool-manager.mjs +63 -0
- package/esm2022/lib/toolbar/tool-kit/canvas-tool.mjs +2 -0
- package/esm2022/lib/toolbar/tool-kit/frame-pixels.mjs +108 -0
- package/esm2022/lib/toolbar/tool-kit/mask-stroke-editor.mjs +306 -0
- package/esm2022/lib/toolbar/tool-kit/matrix-frame.mjs +61 -0
- package/esm2022/lib/toolbar/tool-kit/tool-overlay.mjs +140 -0
- package/esm2022/lib/toolbar/tool-kit/undo-gesture.mjs +24 -0
- package/esm2022/lib/toolbar/tool-slider/tool-slider.component.mjs +63 -0
- package/esm2022/lib/toolbar/toolbar-help-dialog/toolbar-help-dialog.component.mjs +50 -0
- package/esm2022/lib/toolbar/toolbar.component.mjs +68 -117
- package/esm2022/lib/toolbar/vertex-eraser/vertex-eraser-tool.service.mjs +93 -115
- package/esm2022/lib/toolbar/view-controls/view-controls.component.mjs +107 -0
- package/esm2022/lib/toolbar/wand/wand-region-grow.mjs +321 -0
- package/esm2022/lib/toolbar/wand/wand-tool.service.mjs +121 -416
- package/esm2022/lib/toolbar/wand/wand.service.mjs +30 -894
- package/esm2022/lib/toolbar/zoom-to-box/zoom-to-box-tool.service.mjs +48 -90
- package/esm2022/lib/util/mark-for-check.mjs +17 -0
- package/esm2022/lib/util/supersede.mjs +56 -0
- package/esm2022/lib/visualization.module.mjs +39 -141
- package/esm2022/lib/visualizer/floating-drag.directive.mjs +58 -0
- package/esm2022/lib/visualizer/region-actions.mjs +149 -0
- package/esm2022/lib/visualizer/region-load.mjs +60 -0
- package/esm2022/lib/visualizer/spatial-dataset-binder.mjs +163 -0
- package/esm2022/lib/visualizer/tool-modes.mjs +113 -0
- package/esm2022/lib/visualizer/viewer-shortcuts.mjs +167 -0
- package/esm2022/lib/visualizer/visualizer-context-menu.mjs +119 -0
- package/esm2022/lib/visualizer.component.mjs +480 -1902
- package/esm2022/lib/workers/spatial-math-ops.mjs +43 -0
- package/esm2022/lib/workers/spatial-math-worker.mjs +10 -0
- package/esm2022/lib/workers/spatial-math.mjs +190 -0
- package/fesm2022/jax-data-science-sci-image-visualizer-jax-data-science-sci-image-visualizer-Csxlnq7I.mjs +41083 -0
- package/fesm2022/jax-data-science-sci-image-visualizer-jax-data-science-sci-image-visualizer-Csxlnq7I.mjs.map +1 -0
- package/fesm2022/jax-data-science-sci-image-visualizer-onnx-sam-session-Bkujqg7m.mjs +238 -0
- package/fesm2022/jax-data-science-sci-image-visualizer-onnx-sam-session-Bkujqg7m.mjs.map +1 -0
- package/fesm2022/jax-data-science-sci-image-visualizer-spatial-math-worker-BzVFFqGS.mjs +12 -0
- package/fesm2022/jax-data-science-sci-image-visualizer-spatial-math-worker-BzVFFqGS.mjs.map +1 -0
- package/fesm2022/jax-data-science-sci-image-visualizer.mjs +41 -34467
- package/fesm2022/jax-data-science-sci-image-visualizer.mjs.map +1 -1
- package/fesm2022/mask.worker.js +36 -917
- package/fesm2022/onnx-sam.worker.js +52 -16
- package/fesm2022/spatial-math.worker.js +471 -0
- package/fesm2022/tsne.worker.js +32 -15
- package/index.d.ts +13 -10
- package/lib/channel-histogram/channel-histogram.component.d.ts +53 -43
- package/lib/contracts/capabilities.contract.d.ts +4 -2
- package/lib/contracts/cell-segmenter.contract.d.ts +1 -0
- package/lib/contracts/channel-histogram-api.contract.d.ts +4 -0
- package/lib/contracts/color.d.ts +27 -0
- package/lib/contracts/colormap-lut.d.ts +19 -4
- package/lib/contracts/coordinate-transform.contract.d.ts +3 -3
- package/lib/contracts/display-types.d.ts +21 -0
- package/lib/contracts/instance-segmenter.contract.d.ts +5 -0
- package/lib/contracts/intensity.d.ts +13 -2
- package/lib/contracts/plot-type.d.ts +3 -1
- package/lib/contracts/ports/image-state.port.d.ts +6 -2
- package/lib/contracts/ports/preferences.port.d.ts +4 -0
- package/lib/contracts/ports/region-io.port.d.ts +1 -0
- package/lib/contracts/ports/spatial-data.port.d.ts +4 -10
- package/lib/contracts/ports/tile-access.port.d.ts +1 -0
- package/lib/contracts/region-editor-api.contract.d.ts +1 -1
- package/lib/contracts/region-overlay.contract.d.ts +5 -0
- package/lib/contracts/sam.contract.d.ts +7 -0
- package/lib/contracts/semantic-segmenter.contract.d.ts +6 -0
- package/lib/contracts/spatial-dataset.contract.d.ts +19 -6
- package/lib/contracts/toolbar-tool.contract.d.ts +1 -0
- package/lib/contracts/visualizer.contract.d.ts +221 -54
- package/lib/contracts/viz-config.d.ts +1 -0
- package/lib/geometry/contour.d.ts +24 -0
- package/lib/geometry/raster.d.ts +42 -0
- package/lib/geometry/ring.d.ts +67 -0
- package/lib/hex-color-picker/hex-color-picker.component.d.ts +61 -27
- package/lib/implementations/base-store-visualizer.d.ts +61 -15
- package/lib/implementations/napari-js/napari-axes-gizmo.d.ts +36 -0
- package/lib/implementations/napari-js/napari-display-state.d.ts +76 -0
- package/lib/implementations/napari-js/napari-helpers.d.ts +129 -0
- package/lib/implementations/napari-js/napari-image-2d-scene.d.ts +162 -0
- package/lib/implementations/napari-js/napari-loading-badge.d.ts +0 -1
- package/lib/implementations/napari-js/napari-loading-state.d.ts +30 -0
- package/lib/implementations/napari-js/napari-region-overlay.d.ts +62 -70
- package/lib/implementations/napari-js/napari-scene.d.ts +93 -0
- package/lib/implementations/napari-js/napari-spatial-2d-scene.d.ts +163 -0
- package/lib/implementations/napari-js/napari-spatial-3d-scene.d.ts +212 -0
- package/lib/implementations/napari-js/napari-spatial-encoding.d.ts +114 -0
- package/lib/implementations/napari-js/napari-spatial-hover.d.ts +89 -0
- package/lib/implementations/napari-js/napari-spatial-scene.d.ts +118 -0
- package/lib/implementations/napari-js/napari-spatial-tiles.d.ts +56 -263
- package/lib/implementations/napari-js/napari-spatial-tooltip.d.ts +1 -1
- package/lib/implementations/napari-js/napari-surface-scene.d.ts +76 -0
- package/lib/implementations/napari-js/napari-tile-client.d.ts +214 -0
- package/lib/implementations/napari-js/napari-tool-bridge.d.ts +179 -0
- package/lib/implementations/napari-js/napari-visualizer.service.d.ts +121 -883
- package/lib/implementations/napari-js/napari-volume-scene.d.ts +104 -0
- package/lib/implementations/napari-js/napari-volume-z-handle.d.ts +8 -12
- package/lib/implementations/napari-js/region-overlay/overlay-projection.d.ts +59 -0
- package/lib/implementations/napari-js/region-overlay/region-edit.d.ts +15 -0
- package/lib/implementations/napari-js/region-overlay/region-svg-renderer.d.ts +54 -0
- package/lib/implementations/napari-js/spatial-tiles/categorical-lookup.d.ts +26 -0
- package/lib/implementations/napari-js/spatial-tiles/cell-layers.d.ts +70 -0
- package/lib/implementations/napari-js/spatial-tiles/density-layer.d.ts +61 -0
- package/lib/implementations/napari-js/spatial-tiles/layer-groups.d.ts +67 -0
- package/lib/implementations/napari-js/spatial-tiles/plan-context.d.ts +38 -0
- package/lib/implementations/napari-js/spatial-tiles/transcript-hover.d.ts +71 -0
- package/lib/implementations/napari-js/spatial-tiles/transcript-jobs.d.ts +105 -0
- package/lib/implementations/napari-js/spatial-tiles/transcript-layers.d.ts +56 -0
- package/lib/implementations/osd/display-pipeline.d.ts +38 -9
- package/lib/implementations/osd/histogram-sampler.d.ts +22 -12
- package/lib/implementations/osd/openseadragon-viewer-options.d.ts +35 -0
- package/lib/implementations/osd/openseadragon-visualizer.service.d.ts +78 -354
- package/lib/implementations/osd/osd-coordinate-transform.d.ts +2 -1
- package/lib/implementations/osd/osd-coords.d.ts +6 -4
- package/lib/implementations/osd/osd-export.d.ts +36 -0
- package/lib/implementations/osd/osd-lib.d.ts +7 -0
- package/lib/implementations/osd/osd-navigator-chrome.d.ts +69 -0
- package/lib/implementations/osd/osd-pixel-readback.d.ts +22 -0
- package/lib/implementations/osd/osd-region-overlay-draw.d.ts +37 -0
- package/lib/implementations/osd/osd-region-overlay.d.ts +36 -48
- package/lib/implementations/osd/osd-scale-bar.d.ts +8 -6
- package/lib/implementations/osd/osd-tile-source.d.ts +49 -0
- package/lib/implementations/osd/osd-viewer-like.d.ts +100 -0
- package/lib/implementations/osd/osd-viewer-mount.d.ts +14 -0
- package/lib/implementations/osd/osd-viewport.d.ts +77 -0
- package/lib/implementations/osd/osd-zoom.d.ts +6 -0
- package/lib/implementations/osd/simple-source.d.ts +161 -0
- package/lib/implementations/osd/slice-cache.d.ts +12 -3
- package/lib/implementations/osd/tile-client.d.ts +11 -14
- package/lib/implementations/osd/tile-recolor.d.ts +141 -0
- package/lib/implementations/plotly/omics-trace-builders.d.ts +32 -20
- package/lib/implementations/plotly/plotly-image-loader.d.ts +49 -0
- package/lib/implementations/plotly/plotly-image-recolor.d.ts +75 -0
- package/lib/implementations/plotly/plotly-intensity-inset.d.ts +8 -0
- package/lib/implementations/plotly/plotly-isosurface-controls.d.ts +38 -0
- package/lib/implementations/plotly/plotly-layouts.d.ts +188 -0
- package/lib/implementations/plotly/plotly-readback.d.ts +41 -0
- package/lib/implementations/plotly/plotly-region-overlay.d.ts +2 -2
- package/lib/implementations/plotly/plotly-shape-projection.d.ts +92 -0
- package/lib/implementations/plotly/plotly-trace-builders.d.ts +23 -12
- package/lib/implementations/plotly/plotly-zoom-controller.d.ts +86 -0
- package/lib/implementations/plotly/plotly.service.d.ts +136 -401
- package/lib/implementations/region-centroids.d.ts +14 -0
- package/lib/implementations/simple-slice-access.service.d.ts +7 -4
- package/lib/implementations/spatial-data-http/spatial-data-http.service.d.ts +42 -18
- package/lib/implementations/spatial-data-http/spatial-wire.d.ts +34 -9
- package/lib/implementations/tile-server/index.d.ts +5 -0
- package/lib/implementations/tile-server/native-histogram.d.ts +25 -0
- package/lib/implementations/tile-server/poll-descriptor.d.ts +39 -0
- package/lib/implementations/tile-server/tile-protocol.d.ts +80 -0
- package/lib/implementations/tile-server/transport.d.ts +62 -0
- package/lib/intensity/intensity-profile.d.ts +66 -0
- package/lib/intensity/intensity-profile.service.d.ts +108 -0
- package/lib/intensity-inset/intensity-inset.component.d.ts +58 -0
- package/lib/models/bezier.d.ts +0 -5
- package/lib/models/class-preset.d.ts +18 -0
- package/lib/models/geometry.d.ts +14 -48
- package/lib/models/polygon-edit.d.ts +72 -0
- package/lib/models/polygon-factory.d.ts +40 -0
- package/lib/models/region-clone.d.ts +20 -0
- package/lib/models/region-geojson.d.ts +17 -0
- package/lib/models/region.d.ts +40 -4
- package/lib/models/shape.d.ts +8 -0
- package/lib/plot-mode/contribution-host.d.ts +125 -0
- package/lib/plot-mode/plot-type-menu.d.ts +60 -0
- package/lib/plot-mode/tool-params-model.d.ts +49 -0
- package/lib/plot.utilities.d.ts +19 -30
- package/lib/processing/processing-image.d.ts +5 -2
- package/lib/provide-visualization.d.ts +19 -2
- package/lib/region-editor/classes-panel/classes-panel.component.d.ts +56 -0
- package/lib/region-editor/file-stem.d.ts +7 -0
- package/lib/region-editor/manage-classes-dialog/manage-classes-dialog.component.d.ts +45 -0
- package/lib/region-editor/mask-export.service.d.ts +54 -0
- package/lib/region-editor/mask-raster.d.ts +2 -8
- package/lib/region-editor/region-color-dialog/region-color-dialog.component.d.ts +29 -0
- package/lib/region-editor/region-editor-help/region-editor-help.component.d.ts +11 -0
- package/lib/region-editor/region-editor.component.d.ts +166 -199
- package/lib/region-editor/region-metrics.d.ts +26 -0
- package/lib/region-editor/region-persistence.service.d.ts +69 -0
- package/lib/region-editor/region-table/region-table.component.d.ts +83 -0
- package/lib/region-editor/save-mask-dialog/save-mask-dialog.component.d.ts +36 -0
- package/lib/region-editor/save-regions-dialog/save-regions-dialog.component.d.ts +37 -0
- package/lib/region-ops.service.d.ts +1 -7
- package/lib/region-overlay/region-geometry.d.ts +157 -0
- package/lib/region-overlay/region-hit-test.d.ts +38 -0
- package/lib/region-overlay/svg-region-renderer.d.ts +110 -0
- package/lib/render-orchestrator.d.ts +6 -2
- package/lib/render-session.d.ts +75 -0
- package/lib/routing-visualizer.service.d.ts +110 -58
- package/lib/spatial/density-raster.d.ts +6 -0
- package/lib/spatial/embedding-compute-coordinator.d.ts +123 -0
- package/lib/spatial/embedding-compute.d.ts +21 -2
- package/lib/spatial/glyphs.d.ts +16 -0
- package/lib/spatial/lod.d.ts +94 -0
- package/lib/spatial/spatial-controls.facade.d.ts +64 -0
- package/lib/spatial/spatial-density.d.ts +15 -5
- package/lib/spatial/spatial-encoding.d.ts +11 -44
- package/lib/spatial/spatial-expression.d.ts +40 -22
- package/lib/spatial/spatial-framing.d.ts +1 -0
- package/lib/spatial/spatial-heatmap.d.ts +2 -0
- package/lib/spatial/spatial-hover.d.ts +4 -16
- package/lib/spatial/spatial-panel-model.d.ts +135 -0
- package/lib/spatial/spatial-selection.d.ts +21 -26
- package/lib/spatial/spatial-tile-merge.d.ts +41 -0
- package/lib/spatial/spatial-tiles.d.ts +9 -256
- package/lib/spatial/stats.d.ts +38 -0
- package/lib/spatial/transcript-grouping.d.ts +119 -0
- package/lib/spatial-controls/spatial-cells-panel/spatial-cells-panel.component.d.ts +64 -0
- package/lib/spatial-controls/spatial-charts/chart-data-model.d.ts +153 -0
- package/lib/spatial-controls/spatial-charts/chart-help.d.ts +69 -0
- package/lib/spatial-controls/spatial-charts/plotly-chart-host.d.ts +98 -0
- package/lib/spatial-controls/spatial-charts/spatial-chart-window/spatial-chart-window.component.d.ts +26 -0
- package/lib/spatial-controls/spatial-charts/spatial-charts.component.d.ts +101 -260
- package/lib/spatial-controls/spatial-charts/spatial-embedding-controls/spatial-embedding-controls.component.d.ts +43 -0
- package/lib/spatial-controls/spatial-charts/spatial-heatmap-controls/spatial-heatmap-controls.component.d.ts +27 -0
- package/lib/spatial-controls/spatial-controls.component.d.ts +68 -448
- package/lib/spatial-controls/spatial-gene-picker.d.ts +86 -0
- package/lib/spatial-controls/spatial-gene-tree/spatial-gene-tree.component.d.ts +102 -0
- package/lib/spatial-controls/spatial-groups-panel/spatial-groups-panel.component.d.ts +72 -0
- package/lib/spatial-controls/spatial-key/spatial-key.component.d.ts +66 -0
- package/lib/spatial-controls/spatial-key/spatial-key.model.d.ts +33 -0
- package/lib/spatial-controls/spatial-marker-genes-form/spatial-marker-genes-form.component.d.ts +64 -0
- package/lib/spatial-controls/spatial-observations-panel/spatial-observations-panel.component.d.ts +117 -0
- package/lib/spatial-controls/spatial-transcripts-panel/spatial-transcripts-panel.component.d.ts +142 -0
- package/lib/store/class-color.util.d.ts +35 -1
- package/lib/store/region-history.d.ts +66 -0
- package/lib/store/region-scope-cache.d.ts +63 -0
- package/lib/store/region-selection.d.ts +36 -0
- package/lib/store/region-store.service.d.ts +104 -112
- package/lib/store/visualizer-store.service.d.ts +22 -33
- package/lib/toast-outlets.d.ts +4 -3
- package/lib/toolbar/brush/brush-tool.service.d.ts +31 -98
- package/lib/toolbar/canvas-tools.d.ts +20 -0
- package/lib/toolbar/crop/slide-crop.d.ts +10 -4
- package/lib/toolbar/plot-type-selector/plot-type-selector.component.d.ts +38 -0
- package/lib/toolbar/region-tools/region-tool-buttons.d.ts +21 -0
- package/lib/toolbar/region-tools/region-tools.component.d.ts +60 -0
- package/lib/toolbar/segmentation/cell-segment-tool.service.d.ts +10 -14
- package/lib/toolbar/segmentation/cellpose-segmenter.service.d.ts +12 -2
- package/lib/toolbar/segmentation/onnx-sam-session.d.ts +22 -3
- package/lib/toolbar/segmentation/pending-calls.d.ts +31 -0
- package/lib/toolbar/segmentation/sam-model-registry.d.ts +9 -3
- package/lib/toolbar/segmentation/sam-onnx-core.d.ts +18 -5
- package/lib/toolbar/segmentation/sam-point-tool.service.d.ts +46 -32
- package/lib/toolbar/segmentation/sam-prompt.d.ts +7 -31
- package/lib/toolbar/segmentation/sam-session.service.d.ts +74 -0
- package/lib/toolbar/segmentation/sam-tool.service.d.ts +23 -30
- package/lib/toolbar/segmentation/segmentation-commit.d.ts +8 -0
- package/lib/toolbar/segmentation/segmentation-runner.d.ts +52 -0
- package/lib/toolbar/segmentation-tools/segmentation-tools.component.d.ts +87 -0
- package/lib/toolbar/stack-controls/stack-controls.component.d.ts +40 -0
- package/lib/toolbar/tool-kit/async-tool-status.d.ts +21 -0
- package/lib/toolbar/tool-kit/canvas-tool-manager.d.ts +36 -0
- package/lib/toolbar/tool-kit/canvas-tool.d.ts +86 -0
- package/lib/toolbar/tool-kit/frame-pixels.d.ts +45 -0
- package/lib/toolbar/tool-kit/mask-stroke-editor.d.ts +125 -0
- package/lib/toolbar/tool-kit/matrix-frame.d.ts +40 -0
- package/lib/toolbar/tool-kit/tool-overlay.d.ts +60 -0
- package/lib/toolbar/tool-kit/undo-gesture.d.ts +17 -0
- package/lib/toolbar/tool-slider/tool-slider.component.d.ts +33 -0
- package/lib/toolbar/toolbar-help-dialog/toolbar-help-dialog.component.d.ts +24 -0
- package/lib/toolbar/toolbar.component.d.ts +47 -83
- package/lib/toolbar/vertex-eraser/vertex-eraser-tool.service.d.ts +33 -40
- package/lib/toolbar/view-controls/view-controls.component.d.ts +54 -0
- package/lib/toolbar/wand/wand-region-grow.d.ts +49 -0
- package/lib/toolbar/wand/wand-tool.service.d.ts +39 -124
- package/lib/toolbar/wand/wand.service.d.ts +22 -116
- package/lib/toolbar/zoom-to-box/zoom-to-box-tool.service.d.ts +17 -37
- package/lib/util/mark-for-check.d.ts +11 -0
- package/lib/util/supersede.d.ts +53 -0
- package/lib/visualization.module.d.ts +18 -39
- package/lib/visualizer/floating-drag.directive.d.ts +30 -0
- package/lib/visualizer/region-actions.d.ts +54 -0
- package/lib/visualizer/region-load.d.ts +27 -0
- package/lib/visualizer/spatial-dataset-binder.d.ts +74 -0
- package/lib/visualizer/tool-modes.d.ts +49 -0
- package/lib/visualizer/viewer-shortcuts.d.ts +71 -0
- package/lib/visualizer/visualizer-context-menu.d.ts +55 -0
- package/lib/visualizer.component.d.ts +201 -447
- package/lib/workers/spatial-math-ops.d.ts +65 -0
- package/lib/workers/spatial-math-worker.d.ts +7 -0
- package/lib/workers/spatial-math.d.ts +74 -0
- package/package.json +12 -3
- package/src/lib/styles/_viz-icons-rules.scss +73 -0
- package/src/lib/styles/viz-icons.scss +14 -0
- package/esm2022/lib/implementations/napari-js/napari-axes-labels.mjs +0 -97
- package/esm2022/lib/implementations/napari-js/napari-navigator.mjs +0 -195
- package/esm2022/lib/implementations/napari-js/napari-scale-bar.mjs +0 -92
- package/fesm2022/jax-data-science-sci-image-visualizer-onnx-sam-session-BwP-A11m.mjs +0 -329
- package/fesm2022/jax-data-science-sci-image-visualizer-onnx-sam-session-BwP-A11m.mjs.map +0 -1
- package/lib/implementations/napari-js/napari-axes-labels.d.ts +0 -49
- package/lib/implementations/napari-js/napari-navigator.d.ts +0 -72
- package/lib/implementations/napari-js/napari-scale-bar.d.ts +0 -35
- package/src/lib/assets/cell-detection.svg +0 -37
- package/src/lib/assets/click.svg +0 -1
- package/src/lib/assets/colormap-luts.json +0 -1
- package/src/lib/assets/edit-selection-white.svg +0 -47
- package/src/lib/assets/icons/colormap-earth.png +0 -0
- package/src/lib/assets/icons/colormap-placeholder.png +0 -0
- package/src/lib/assets/icons/colormap-pubu.png +0 -0
- package/src/lib/assets/interactive-segmentation-cursor.svg +0 -1
- package/src/lib/assets/picture-segmentation.svg +0 -43
- package/src/lib/assets/test/download-379.svg +0 -1
- package/src/lib/assets/test/download-98.svg +0 -1
- package/src/lib/assets/test/json-1.svg +0 -1
- package/src/lib/assets/test/load-53.svg +0 -1
- package/src/lib/assets/test/mask-44.svg +0 -1
- package/src/lib/assets/test/mask-download-44.svg +0 -15
- package/src/lib/assets/test/mask-save-44.svg +0 -11
- package/src/lib/assets/test/overlay-1.svg +0 -1
- package/src/lib/assets/test/overlay-4.svg +0 -1
- package/src/lib/assets/test/region-26.svg +0 -1
- package/src/lib/assets/test/save-56.svg +0 -1
- package/src/lib/assets/test/upload-43.svg +0 -1
|
@@ -0,0 +1,274 @@
|
|
|
1
|
+
import { colormapFromLut } from 'napari-js';
|
|
2
|
+
import { NO_CATEGORY, isCategoricalColumn, } from '../../../contracts/spatial-dataset.contract';
|
|
3
|
+
import { DEFAULT_CATEGORICAL_PALETTE, MISSING_COLOR, contrastWindow, parseHex, resolveCategoryColors, } from '../../../spatial/spatial-encoding';
|
|
4
|
+
import { POLYGON_LEVEL_MIN_CELL_PX, cellTypeColumnFor, cellsShown, polygonLevelFor, tileId, tilesInRect, typicalCellDiameter, } from '../../../spatial/lod';
|
|
5
|
+
import { filterRings, mergePolygonTiles } from '../../../spatial/spatial-tile-merge';
|
|
6
|
+
import { ContrastWindowCache } from '../napari-spatial-encoding';
|
|
7
|
+
const MAX_CELL_TILES = 48;
|
|
8
|
+
/**
|
|
9
|
+
* The cell outlines of the 2D spatial view, at the polygon level the zoom calls for: a fill,
|
|
10
|
+
* an outline or both (plus nucleus outlines for the "both" cell set), coloured by the view's
|
|
11
|
+
* cell-colour mode, with switched-off groups left out of the geometry.
|
|
12
|
+
*
|
|
13
|
+
* Geometry and style are keyed apart, so a recolour (a new cell-type column, a selection)
|
|
14
|
+
* rewrites the per-shape values of the existing layers and never re-expands the rings.
|
|
15
|
+
*/
|
|
16
|
+
export class CellLayers {
|
|
17
|
+
constructor(port, groups, lookup, host) {
|
|
18
|
+
this.port = port;
|
|
19
|
+
this.groups = groups;
|
|
20
|
+
this.lookup = lookup;
|
|
21
|
+
this.host = host;
|
|
22
|
+
this.polygonsShown = false;
|
|
23
|
+
/** Rings currently drawn and the (dataset, set, tiles) they came from. */
|
|
24
|
+
this.currentRings = null;
|
|
25
|
+
this.cellGeometryKey = null;
|
|
26
|
+
this.currentNuclei = null;
|
|
27
|
+
this.cellStyleKey = null;
|
|
28
|
+
/** Selection identity → revision, so a change key can name a selection cheaply. */
|
|
29
|
+
this.lastSelection = null;
|
|
30
|
+
this.selectionRevision = 0;
|
|
31
|
+
/** Continuous colourings' windows, per (vector, clip, log): `contrastWindow` sorts every
|
|
32
|
+
* value, and a selection or opacity change recolours with the vector unchanged (SPATIAL-12). */
|
|
33
|
+
this.contrastWindows = new ContrastWindowCache();
|
|
34
|
+
}
|
|
35
|
+
/** True while outlines are on screen — the service hides its dots then. */
|
|
36
|
+
get outlinesShown() {
|
|
37
|
+
return this.polygonsShown;
|
|
38
|
+
}
|
|
39
|
+
/** The viewer went away (its layers with it): the outlines are no longer shown. */
|
|
40
|
+
detached() {
|
|
41
|
+
this.setPolygonsShown(false);
|
|
42
|
+
}
|
|
43
|
+
/** Draw the cells covering `rect` at the level `pxPerUnit` calls for, or drop them. */
|
|
44
|
+
async plan(dataset, view, selection, rect, pxPerUnit, ctx) {
|
|
45
|
+
const tiled = dataset.polygonTiles;
|
|
46
|
+
const whole = !tiled && dataset.polygons && this.port.getPolygons;
|
|
47
|
+
if (!cellsShown(dataset, view) || (!tiled && !whole)) {
|
|
48
|
+
this.drop();
|
|
49
|
+
return;
|
|
50
|
+
}
|
|
51
|
+
const diameter = typicalCellDiameter(dataset.observations.radius);
|
|
52
|
+
// Whole-dataset rings have one level and no coarser fallback, so they are drawn as
|
|
53
|
+
// soon as a cell is big enough to read as a shape rather than a dot.
|
|
54
|
+
const level = tiled
|
|
55
|
+
? polygonLevelFor(pxPerUnit, diameter, tiled.levels.length)
|
|
56
|
+
: pxPerUnit * diameter >= POLYGON_LEVEL_MIN_CELL_PX[2]
|
|
57
|
+
? 0
|
|
58
|
+
: -1;
|
|
59
|
+
if (level < 0) {
|
|
60
|
+
this.drop();
|
|
61
|
+
return;
|
|
62
|
+
}
|
|
63
|
+
// Groups switched off in the list: their cells are left out of the geometry.
|
|
64
|
+
const hidden = await this.lookup.hiddenCodes(dataset, view);
|
|
65
|
+
if (ctx.stale())
|
|
66
|
+
return;
|
|
67
|
+
const label = view.cellSet === 'both' ? 'Cells and nuclei' : view.cellSet === 'nucleus' ? 'Nuclei' : 'Cells';
|
|
68
|
+
const geometry = await ctx.track(label, this.cellGeometry(dataset, view, rect, level, hidden, ctx));
|
|
69
|
+
if (!geometry)
|
|
70
|
+
return;
|
|
71
|
+
const { rings, nuclei, geometryKey } = geometry;
|
|
72
|
+
const geometryChanged = geometryKey !== this.cellGeometryKey;
|
|
73
|
+
const styleKey = [
|
|
74
|
+
geometryKey,
|
|
75
|
+
view.cellColorMode,
|
|
76
|
+
view.cellColorGene,
|
|
77
|
+
view.cellSingleColor,
|
|
78
|
+
cellTypeColumnFor(dataset, view),
|
|
79
|
+
this.selectionRev(selection),
|
|
80
|
+
view.logScale,
|
|
81
|
+
view.percentileClip.join(),
|
|
82
|
+
JSON.stringify(view.continuousColormap),
|
|
83
|
+
view.cellDraw,
|
|
84
|
+
view.cellOpacity,
|
|
85
|
+
].join('|');
|
|
86
|
+
const present = ['cellFill', 'cellOutline', 'nucleusOutline'].some((g) => this.groups.shown(g));
|
|
87
|
+
if (!geometryChanged && styleKey === this.cellStyleKey && present) {
|
|
88
|
+
this.setPolygonsShown(true);
|
|
89
|
+
return;
|
|
90
|
+
}
|
|
91
|
+
const colors = await this.cellColors(dataset, view, selection, rings.observation);
|
|
92
|
+
if (ctx.stale())
|
|
93
|
+
return;
|
|
94
|
+
this.currentRings = rings;
|
|
95
|
+
this.currentNuclei = nuclei;
|
|
96
|
+
// A geometry missing a failed tile is drawn but not remembered, so the retry refetches it.
|
|
97
|
+
this.cellGeometryKey = ctx.incomplete ? null : geometryKey;
|
|
98
|
+
this.cellStyleKey = styleKey;
|
|
99
|
+
this.drawCells(dataset, view, geometry, colors, geometryChanged);
|
|
100
|
+
this.setPolygonsShown(true);
|
|
101
|
+
}
|
|
102
|
+
/**
|
|
103
|
+
* The cell layers: the fill and the outline the view's draw mode asks for, and with "both" the
|
|
104
|
+
* nucleus outlines over them. A geometry change builds new layers; a style change restyles them.
|
|
105
|
+
*/
|
|
106
|
+
drawCells(dataset, view, { rings, nuclei }, colors, geometryChanged) {
|
|
107
|
+
const ref = dataset.imageRef;
|
|
108
|
+
const common = { scale: ref?.scale ?? [1, 1], translate: ref?.translate ?? [0, 0] };
|
|
109
|
+
const fill = view.cellDraw !== 'outline';
|
|
110
|
+
const outline = view.cellDraw !== 'fill';
|
|
111
|
+
this.groups.upsertShapes('cellFill', fill, geometryChanged, rings, {
|
|
112
|
+
name: 'cells',
|
|
113
|
+
draw: 'fill',
|
|
114
|
+
opacity: view.cellOpacity,
|
|
115
|
+
...colors,
|
|
116
|
+
...common,
|
|
117
|
+
});
|
|
118
|
+
this.groups.upsertShapes('cellOutline', outline, geometryChanged, rings, fill
|
|
119
|
+
? // Over a fill, a dark outline separates neighbours of the same type.
|
|
120
|
+
{ name: 'cell outlines', draw: 'outline', color: [0.08, 0.08, 0.1, 1], opacity: 0.7, ...common }
|
|
121
|
+
: { name: 'cell outlines', draw: 'outline', opacity: 1, ...colors, ...common });
|
|
122
|
+
// "Both": nuclei outlined over the cells, light so they read against any fill.
|
|
123
|
+
if (nuclei) {
|
|
124
|
+
this.groups.upsertShapes('nucleusOutline', true, geometryChanged, nuclei, {
|
|
125
|
+
name: 'nucleus outlines',
|
|
126
|
+
draw: 'outline',
|
|
127
|
+
color: [0.95, 0.95, 0.98, 1],
|
|
128
|
+
opacity: 0.8,
|
|
129
|
+
...common,
|
|
130
|
+
});
|
|
131
|
+
}
|
|
132
|
+
else {
|
|
133
|
+
this.groups.drop('nucleusOutline');
|
|
134
|
+
}
|
|
135
|
+
}
|
|
136
|
+
selectionRev(selection) {
|
|
137
|
+
if (selection !== this.lastSelection) {
|
|
138
|
+
this.lastSelection = selection;
|
|
139
|
+
this.selectionRevision++;
|
|
140
|
+
}
|
|
141
|
+
return this.selectionRevision;
|
|
142
|
+
}
|
|
143
|
+
/**
|
|
144
|
+
* The rings' colours by their owners, by the view's cell-colour mode (Xenium Explorer's "Cell
|
|
145
|
+
* Color"): one RGBA per shape for a grouping, values + colormap for a measurement, one colour
|
|
146
|
+
* for "single". A selection mutes what it leaves out.
|
|
147
|
+
*/
|
|
148
|
+
async cellColors(dataset, view, selection, owners) {
|
|
149
|
+
const muted = selection.count > 0 ? selection.mask : null;
|
|
150
|
+
const mode = view.cellColorMode;
|
|
151
|
+
if (mode === 'single') {
|
|
152
|
+
const [r, g, b] = parseHex(view.cellSingleColor);
|
|
153
|
+
return { color: [r / 255, g / 255, b / 255, 1] };
|
|
154
|
+
}
|
|
155
|
+
const continuous = async (raw, log) => {
|
|
156
|
+
const values = new Float32Array(owners.length);
|
|
157
|
+
for (let i = 0; i < owners.length; i++) {
|
|
158
|
+
const v = raw[owners[i]] ?? NaN;
|
|
159
|
+
values[i] = log ? Math.log1p(Math.max(0, v)) : v;
|
|
160
|
+
}
|
|
161
|
+
const [clipLo, clipHi] = view.percentileClip;
|
|
162
|
+
// Keyed by the SOURCE vector (the log copy would be new on every call), as the 3D cloud's.
|
|
163
|
+
const [lo, hi] = this.contrastWindows.get(raw, clipLo, clipHi, log, () => contrastWindow(log ? raw.map((v) => Math.log1p(Math.max(0, v))) : raw, clipLo, clipHi));
|
|
164
|
+
return {
|
|
165
|
+
values,
|
|
166
|
+
colormap: colormapFromLut('spatial-continuous', this.host.continuousLut(view)),
|
|
167
|
+
contrastLimits: [lo, hi],
|
|
168
|
+
};
|
|
169
|
+
};
|
|
170
|
+
if (mode === 'gene' && view.cellColorGene) {
|
|
171
|
+
return continuous(await this.port.getFeatureVector(view.cellColorGene), true);
|
|
172
|
+
}
|
|
173
|
+
if (mode === 'transcriptDensity' && dataset.columns.some((c) => c.name === 'transcript_density')) {
|
|
174
|
+
const column = await this.port.getColumn('transcript_density');
|
|
175
|
+
if (!isCategoricalColumn(column))
|
|
176
|
+
return continuous(column.values, false);
|
|
177
|
+
}
|
|
178
|
+
const name = mode === 'segmentation' && dataset.columns.some((c) => c.name === 'segmentation_method')
|
|
179
|
+
? 'segmentation_method'
|
|
180
|
+
: cellTypeColumnFor(dataset, view);
|
|
181
|
+
const codes = name ? await this.lookup.codes(name) : null;
|
|
182
|
+
const palette = categoryRgba(codes?.meta ?? null);
|
|
183
|
+
const missing = rgba01(MISSING_COLOR);
|
|
184
|
+
// One RGBA per shape (napari Shapes' `face_color`): any number of categories keeps its own
|
|
185
|
+
// colour, where a colormap band per category ran out of LUT entries past ~127.
|
|
186
|
+
const faceColor = new Float32Array(owners.length * 4);
|
|
187
|
+
for (let i = 0; i < owners.length; i++) {
|
|
188
|
+
const o = owners[i];
|
|
189
|
+
const code = !codes || (muted && !muted[o]) ? NO_CATEGORY : codes.codes[o];
|
|
190
|
+
faceColor.set(palette[code] ?? missing, i * 4);
|
|
191
|
+
}
|
|
192
|
+
return { faceColor };
|
|
193
|
+
}
|
|
194
|
+
/**
|
|
195
|
+
* The cell rings (and, for "both", the nucleus rings) covering `rect` at `level`, minus
|
|
196
|
+
* the hidden groups — reused when nothing that decides them changed. Null when the
|
|
197
|
+
* view went stale or the dataset has no set to draw.
|
|
198
|
+
*/
|
|
199
|
+
async cellGeometry(dataset, view, rect, level, hidden, ctx) {
|
|
200
|
+
const tiled = dataset.polygonTiles;
|
|
201
|
+
const hiddenKey = view.hiddenGroups.join('\u0001');
|
|
202
|
+
let rings;
|
|
203
|
+
let nuclei = null;
|
|
204
|
+
let geometryKey;
|
|
205
|
+
if (tiled) {
|
|
206
|
+
const both = view.cellSet === 'both';
|
|
207
|
+
const set = !both && view.cellSet && tiled.sets.some((s) => s.name === view.cellSet)
|
|
208
|
+
? view.cellSet
|
|
209
|
+
: (tiled.defaultSet ?? tiled.sets[0]?.name);
|
|
210
|
+
if (!set)
|
|
211
|
+
return null;
|
|
212
|
+
const nucleusSet = both ? tiled.sets.find((s) => s.name !== set)?.name : undefined;
|
|
213
|
+
const keys = tilesInRect(rect, level, tiled.levels, tiled.bounds, MAX_CELL_TILES);
|
|
214
|
+
geometryKey = `${dataset.id}|${set}|${nucleusSet ?? ''}|${hiddenKey}|${keys.map(tileId).join(',')}`;
|
|
215
|
+
if (geometryKey === this.cellGeometryKey && this.currentRings) {
|
|
216
|
+
rings = this.currentRings;
|
|
217
|
+
nuclei = this.currentNuclei;
|
|
218
|
+
}
|
|
219
|
+
else {
|
|
220
|
+
const [tiles, nucleusTiles] = await Promise.all([
|
|
221
|
+
ctx.fetchAll(keys, (k) => this.port.getPolygonTile(set, k.level, k.gx, k.gy)),
|
|
222
|
+
nucleusSet
|
|
223
|
+
? ctx.fetchAll(keys, (k) => this.port.getPolygonTile(nucleusSet, k.level, k.gx, k.gy))
|
|
224
|
+
: Promise.resolve(null),
|
|
225
|
+
]);
|
|
226
|
+
if (ctx.stale())
|
|
227
|
+
return null;
|
|
228
|
+
rings = filterRings(mergePolygonTiles(tiles), hidden);
|
|
229
|
+
nuclei = nucleusTiles ? filterRings(mergePolygonTiles(nucleusTiles), hidden) : null;
|
|
230
|
+
}
|
|
231
|
+
}
|
|
232
|
+
else {
|
|
233
|
+
geometryKey = `${dataset.id}|whole|${hiddenKey}`;
|
|
234
|
+
if (geometryKey === this.cellGeometryKey && this.currentRings) {
|
|
235
|
+
rings = this.currentRings;
|
|
236
|
+
}
|
|
237
|
+
else {
|
|
238
|
+
const polys = await this.port.getPolygons();
|
|
239
|
+
if (ctx.stale())
|
|
240
|
+
return null;
|
|
241
|
+
// Whole-dataset rings are index-aligned with the observations.
|
|
242
|
+
rings = filterRings({ ...polys, observation: Uint32Array.from({ length: polys.count }, (_v, i) => i) }, hidden);
|
|
243
|
+
}
|
|
244
|
+
}
|
|
245
|
+
return { rings, nuclei, geometryKey };
|
|
246
|
+
}
|
|
247
|
+
/** Remove the cell layers and forget what they showed. */
|
|
248
|
+
drop() {
|
|
249
|
+
this.groups.drop('cellFill');
|
|
250
|
+
this.groups.drop('cellOutline');
|
|
251
|
+
this.groups.drop('nucleusOutline');
|
|
252
|
+
this.currentNuclei = null;
|
|
253
|
+
this.cellGeometryKey = null;
|
|
254
|
+
this.cellStyleKey = null;
|
|
255
|
+
this.currentRings = null;
|
|
256
|
+
this.setPolygonsShown(false);
|
|
257
|
+
}
|
|
258
|
+
setPolygonsShown(shown) {
|
|
259
|
+
if (shown === this.polygonsShown)
|
|
260
|
+
return;
|
|
261
|
+
this.polygonsShown = shown;
|
|
262
|
+
this.host.polygonsShownChanged(shown);
|
|
263
|
+
}
|
|
264
|
+
}
|
|
265
|
+
/** An 8-bit RGB as an opaque 0..1 RGBA. */
|
|
266
|
+
function rgba01([r, g, b]) {
|
|
267
|
+
return [r / 255, g / 255, b / 255, 1];
|
|
268
|
+
}
|
|
269
|
+
/** A grouping's category colours, as 0..1 RGBA by category code (one default without a grouping). */
|
|
270
|
+
function categoryRgba(meta) {
|
|
271
|
+
const hex = meta && meta.kind === 'categorical' ? resolveCategoryColors(meta) : [DEFAULT_CATEGORICAL_PALETTE[0]];
|
|
272
|
+
return hex.map((h) => rgba01(parseHex(h)));
|
|
273
|
+
}
|
|
274
|
+
//# sourceMappingURL=data:application/json;base64,{"version":3,"file":"cell-layers.js","sourceRoot":"","sources":["../../../../../../src/lib/implementations/napari-js/spatial-tiles/cell-layers.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,eAAe,EAAE,MAAM,WAAW,CAAC;AAM5C,OAAO,EACL,WAAW,EAKX,mBAAmB,GACpB,MAAM,6CAA6C,CAAC;AACrD,OAAO,EACL,2BAA2B,EAC3B,aAAa,EACb,cAAc,EACd,QAAQ,EACR,qBAAqB,GACtB,MAAM,mCAAmC,CAAC;AAE3C,OAAO,EAEL,yBAAyB,EACzB,iBAAiB,EACjB,UAAU,EACV,eAAe,EACf,MAAM,EACN,WAAW,EACX,mBAAmB,GACpB,MAAM,sBAAsB,CAAC;AAC9B,OAAO,EAAE,WAAW,EAAE,iBAAiB,EAAE,MAAM,qCAAqC,CAAC;AACrF,OAAO,EAAE,mBAAmB,EAAE,MAAM,4BAA4B,CAAC;AAKjE,MAAM,cAAc,GAAG,EAAE,CAAC;AAoB1B;;;;;;;GAOG;AACH,MAAM,OAAO,UAAU;IAcrB,YACmB,IAAqB,EACrB,MAAqC,EACrC,MAAyB,EACzB,IAAoB;QAHpB,SAAI,GAAJ,IAAI,CAAiB;QACrB,WAAM,GAAN,MAAM,CAA+B;QACrC,WAAM,GAAN,MAAM,CAAmB;QACzB,SAAI,GAAJ,IAAI,CAAgB;QAjB/B,kBAAa,GAAG,KAAK,CAAC;QAC9B,0EAA0E;QAClE,iBAAY,GAA8B,IAAI,CAAC;QAC/C,oBAAe,GAAkB,IAAI,CAAC;QACtC,kBAAa,GAA8B,IAAI,CAAC;QAChD,iBAAY,GAAkB,IAAI,CAAC;QAC3C,mFAAmF;QAC3E,kBAAa,GAAgC,IAAI,CAAC;QAClD,sBAAiB,GAAG,CAAC,CAAC;QAC9B;yGACiG;QAChF,oBAAe,GAAG,IAAI,mBAAmB,EAAE,CAAC;IAO1D,CAAC;IAEJ,2EAA2E;IAC3E,IAAI,aAAa;QACf,OAAO,IAAI,CAAC,aAAa,CAAC;IAC5B,CAAC;IAED,mFAAmF;IACnF,QAAQ;QACN,IAAI,CAAC,gBAAgB,CAAC,KAAK,CAAC,CAAC;IAC/B,CAAC;IAED,uFAAuF;IACvF,KAAK,CAAC,IAAI,CACR,OAAuB,EACvB,IAAsB,EACtB,SAA+B,EAC/B,IAAc,EACd,SAAiB,EACjB,GAAgB;QAEhB,MAAM,KAAK,GAAG,OAAO,CAAC,YAAY,CAAC;QACnC,MAAM,KAAK,GAAG,CAAC,KAAK,IAAI,OAAO,CAAC,QAAQ,IAAI,IAAI,CAAC,IAAI,CAAC,WAAW,CAAC;QAClE,IAAI,CAAC,UAAU,CAAC,OAAO,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,KAAK,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC;YACrD,IAAI,CAAC,IAAI,EAAE,CAAC;YACZ,OAAO;QACT,CAAC;QACD,MAAM,QAAQ,GAAG,mBAAmB,CAAC,OAAO,CAAC,YAAY,CAAC,MAAM,CAAC,CAAC;QAClE,mFAAmF;QACnF,qEAAqE;QACrE,MAAM,KAAK,GAAG,KAAK;YACjB,CAAC,CAAC,eAAe,CAAC,SAAS,EAAE,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC,MAAM,CAAC;YAC3D,CAAC,CAAC,SAAS,GAAG,QAAQ,IAAI,yBAAyB,CAAC,CAAC,CAAC;gBACpD,CAAC,CAAC,CAAC;gBACH,CAAC,CAAC,CAAC,CAAC,CAAC;QACT,IAAI,KAAK,GAAG,CAAC,EAAE,CAAC;YACd,IAAI,CAAC,IAAI,EAAE,CAAC;YACZ,OAAO;QACT,CAAC;QAED,6EAA6E;QAC7E,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC;QAC5D,IAAI,GAAG,CAAC,KAAK,EAAE;YAAE,OAAO;QACxB,MAAM,KAAK,GAAG,IAAI,CAAC,OAAO,KAAK,MAAM,CAAC,CAAC,CAAC,kBAAkB,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,KAAK,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,OAAO,CAAC;QAC7G,MAAM,QAAQ,GAAG,MAAM,GAAG,CAAC,KAAK,CAAC,KAAK,EAAE,IAAI,CAAC,YAAY,CAAC,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,KAAK,EAAE,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC;QACpG,IAAI,CAAC,QAAQ;YAAE,OAAO;QACtB,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,WAAW,EAAE,GAAG,QAAQ,CAAC;QAEhD,MAAM,eAAe,GAAG,WAAW,KAAK,IAAI,CAAC,eAAe,CAAC;QAC7D,MAAM,QAAQ,GAAG;YACf,WAAW;YACX,IAAI,CAAC,aAAa;YAClB,IAAI,CAAC,aAAa;YAClB,IAAI,CAAC,eAAe;YACpB,iBAAiB,CAAC,OAAO,EAAE,IAAI,CAAC;YAChC,IAAI,CAAC,YAAY,CAAC,SAAS,CAAC;YAC5B,IAAI,CAAC,QAAQ;YACb,IAAI,CAAC,cAAc,CAAC,IAAI,EAAE;YAC1B,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,kBAAkB,CAAC;YACvC,IAAI,CAAC,QAAQ;YACb,IAAI,CAAC,WAAW;SACjB,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACZ,MAAM,OAAO,GAAI,CAAC,UAAU,EAAE,aAAa,EAAE,gBAAgB,CAAW,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;QAC3G,IAAI,CAAC,eAAe,IAAI,QAAQ,KAAK,IAAI,CAAC,YAAY,IAAI,OAAO,EAAE,CAAC;YAClE,IAAI,CAAC,gBAAgB,CAAC,IAAI,CAAC,CAAC;YAC5B,OAAO;QACT,CAAC;QACD,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,UAAU,CAAC,OAAO,EAAE,IAAI,EAAE,SAAS,EAAE,KAAK,CAAC,WAAW,CAAC,CAAC;QAClF,IAAI,GAAG,CAAC,KAAK,EAAE;YAAE,OAAO;QAExB,IAAI,CAAC,YAAY,GAAG,KAAK,CAAC;QAC1B,IAAI,CAAC,aAAa,GAAG,MAAM,CAAC;QAC5B,2FAA2F;QAC3F,IAAI,CAAC,eAAe,GAAG,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,WAAW,CAAC;QAC3D,IAAI,CAAC,YAAY,GAAG,QAAQ,CAAC;QAC7B,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,EAAE,eAAe,CAAC,CAAC;QACjE,IAAI,CAAC,gBAAgB,CAAC,IAAI,CAAC,CAAC;IAC9B,CAAC;IAED;;;OAGG;IACK,SAAS,CACf,OAAuB,EACvB,IAAsB,EACtB,EAAE,KAAK,EAAE,MAAM,EAAoE,EACnF,MAAkB,EAClB,eAAwB;QAExB,MAAM,GAAG,GAAG,OAAO,CAAC,QAAQ,CAAC;QAC7B,MAAM,MAAM,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,KAAK,IAAI,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,SAAS,EAAE,GAAG,EAAE,SAAS,IAAI,CAAC,CAAC,EAAE,CAAC,CAAC,EAAW,CAAC;QAC7F,MAAM,IAAI,GAAG,IAAI,CAAC,QAAQ,KAAK,SAAS,CAAC;QACzC,MAAM,OAAO,GAAG,IAAI,CAAC,QAAQ,KAAK,MAAM,CAAC;QAEzC,IAAI,CAAC,MAAM,CAAC,YAAY,CAAC,UAAU,EAAE,IAAI,EAAE,eAAe,EAAE,KAAK,EAAE;YACjE,IAAI,EAAE,OAAO;YACb,IAAI,EAAE,MAAM;YACZ,OAAO,EAAE,IAAI,CAAC,WAAW;YACzB,GAAG,MAAM;YACT,GAAG,MAAM;SACV,CAAC,CAAC;QACH,IAAI,CAAC,MAAM,CAAC,YAAY,CACtB,aAAa,EACb,OAAO,EACP,eAAe,EACf,KAAK,EACL,IAAI;YACF,CAAC,CAAC,qEAAqE;gBACrE,EAAE,IAAI,EAAE,eAAe,EAAE,IAAI,EAAE,SAAS,EAAE,KAAK,EAAE,CAAC,IAAI,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC,CAAC,EAAE,OAAO,EAAE,GAAG,EAAE,GAAG,MAAM,EAAE;YAClG,CAAC,CAAC,EAAE,IAAI,EAAE,eAAe,EAAE,IAAI,EAAE,SAAS,EAAE,OAAO,EAAE,CAAC,EAAE,GAAG,MAAM,EAAE,GAAG,MAAM,EAAE,CACjF,CAAC;QACF,+EAA+E;QAC/E,IAAI,MAAM,EAAE,CAAC;YACX,IAAI,CAAC,MAAM,CAAC,YAAY,CAAC,gBAAgB,EAAE,IAAI,EAAE,eAAe,EAAE,MAAM,EAAE;gBACxE,IAAI,EAAE,kBAAkB;gBACxB,IAAI,EAAE,SAAS;gBACf,KAAK,EAAE,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC;gBAC5B,OAAO,EAAE,GAAG;gBACZ,GAAG,MAAM;aACV,CAAC,CAAC;QACL,CAAC;aAAM,CAAC;YACN,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,gBAAgB,CAAC,CAAC;QACrC,CAAC;IACH,CAAC;IAEO,YAAY,CAAC,SAA+B;QAClD,IAAI,SAAS,KAAK,IAAI,CAAC,aAAa,EAAE,CAAC;YACrC,IAAI,CAAC,aAAa,GAAG,SAAS,CAAC;YAC/B,IAAI,CAAC,iBAAiB,EAAE,CAAC;QAC3B,CAAC;QACD,OAAO,IAAI,CAAC,iBAAiB,CAAC;IAChC,CAAC;IAED;;;;OAIG;IACK,KAAK,CAAC,UAAU,CACtB,OAAuB,EACvB,IAAsB,EACtB,SAA+B,EAC/B,MAAmB;QAEnB,MAAM,KAAK,GAAG,SAAS,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC;QAC1D,MAAM,IAAI,GAAG,IAAI,CAAC,aAAa,CAAC;QAEhC,IAAI,IAAI,KAAK,QAAQ,EAAE,CAAC;YACtB,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,eAAe,CAAC,CAAC;YACjD,OAAO,EAAE,KAAK,EAAE,CAAC,CAAC,GAAG,GAAG,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,CAAC,EAAE,CAAC;QACnD,CAAC;QAED,MAAM,UAAU,GAAG,KAAK,EAAE,GAAiB,EAAE,GAAY,EAAE,EAAE;YAC3D,MAAM,MAAM,GAAG,IAAI,YAAY,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;YAC/C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;gBACvC,MAAM,CAAC,GAAG,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC;gBAChC,MAAM,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;YACnD,CAAC;YACD,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,IAAI,CAAC,cAAc,CAAC;YAC7C,2FAA2F;YAC3F,MAAM,CAAC,EAAE,EAAE,EAAE,CAAC,GAAG,IAAI,CAAC,eAAe,CAAC,GAAG,CAAC,GAAG,EAAE,MAAM,EAAE,MAAM,EAAE,GAAG,EAAE,GAAG,EAAE,CACvE,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,MAAM,EAAE,MAAM,CAAC,CACvF,CAAC;YACF,OAAO;gBACL,MAAM;gBACN,QAAQ,EAAE,eAAe,CAAC,oBAAoB,EAAE,IAAI,CAAC,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,CAAC;gBAC9E,cAAc,EAAE,CAAC,EAAE,EAAE,EAAE,CAAqB;aAC7C,CAAC;QACJ,CAAC,CAAC;QACF,IAAI,IAAI,KAAK,MAAM,IAAI,IAAI,CAAC,aAAa,EAAE,CAAC;YAC1C,OAAO,UAAU,CAAC,MAAM,IAAI,CAAC,IAAI,CAAC,gBAAgB,CAAC,IAAI,CAAC,aAAa,CAAC,EAAE,IAAI,CAAC,CAAC;QAChF,CAAC;QACD,IAAI,IAAI,KAAK,mBAAmB,IAAI,OAAO,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,oBAAoB,CAAC,EAAE,CAAC;YACjG,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,oBAAoB,CAAC,CAAC;YAC/D,IAAI,CAAC,mBAAmB,CAAC,MAAM,CAAC;gBAAE,OAAO,UAAU,CAAC,MAAM,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC;QAC5E,CAAC;QAED,MAAM,IAAI,GACR,IAAI,KAAK,cAAc,IAAI,OAAO,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,qBAAqB,CAAC;YACtF,CAAC,CAAC,qBAAqB;YACvB,CAAC,CAAC,iBAAiB,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC;QACvC,MAAM,KAAK,GAAG,IAAI,CAAC,CAAC,CAAC,MAAM,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;QAC1D,MAAM,OAAO,GAAG,YAAY,CAAC,KAAK,EAAE,IAAI,IAAI,IAAI,CAAC,CAAC;QAClD,MAAM,OAAO,GAAG,MAAM,CAAC,aAAa,CAAC,CAAC;QACtC,2FAA2F;QAC3F,+EAA+E;QAC/E,MAAM,SAAS,GAAG,IAAI,YAAY,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QACtD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YACvC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC;YACpB,MAAM,IAAI,GAAG,CAAC,KAAK,IAAI,CAAC,KAAK,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;YAC3E,SAAS,CAAC,GAAG,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,OAAO,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;QACjD,CAAC;QACD,OAAO,EAAE,SAAS,EAAE,CAAC;IACvB,CAAC;IAED;;;;OAIG;IACK,KAAK,CAAC,YAAY,CACxB,OAAuB,EACvB,IAAsB,EACtB,IAAc,EACd,KAAa,EACb,MAA0B,EAC1B,GAAgB;QAEhB,MAAM,KAAK,GAAG,OAAO,CAAC,YAAY,CAAC;QACnC,MAAM,SAAS,GAAG,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;QACnD,IAAI,KAAyB,CAAC;QAC9B,IAAI,MAAM,GAA8B,IAAI,CAAC;QAC7C,IAAI,WAAmB,CAAC;QACxB,IAAI,KAAK,EAAE,CAAC;YACV,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,KAAK,MAAM,CAAC;YACrC,MAAM,GAAG,GACP,CAAC,IAAI,IAAI,IAAI,CAAC,OAAO,IAAI,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,IAAI,CAAC,OAAO,CAAC;gBACtE,CAAC,CAAC,IAAI,CAAC,OAAO;gBACd,CAAC,CAAC,CAAC,KAAK,CAAC,UAAU,IAAI,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;YAChD,IAAI,CAAC,GAAG;gBAAE,OAAO,IAAI,CAAC;YACtB,MAAM,UAAU,GAAG,IAAI,CAAC,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,GAAG,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC,SAAS,CAAC;YACnF,MAAM,IAAI,GAAG,WAAW,CAAC,IAAI,EAAE,KAAK,EAAE,KAAK,CAAC,MAAM,EAAE,KAAK,CAAC,MAAM,EAAE,cAAc,CAAC,CAAC;YAClF,WAAW,GAAG,GAAG,OAAO,CAAC,EAAE,IAAI,GAAG,IAAI,UAAU,IAAI,EAAE,IAAI,SAAS,IAAI,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC;YACpG,IAAI,WAAW,KAAK,IAAI,CAAC,eAAe,IAAI,IAAI,CAAC,YAAY,EAAE,CAAC;gBAC9D,KAAK,GAAG,IAAI,CAAC,YAAY,CAAC;gBAC1B,MAAM,GAAG,IAAI,CAAC,aAAa,CAAC;YAC9B,CAAC;iBAAM,CAAC;gBACN,MAAM,CAAC,KAAK,EAAE,YAAY,CAAC,GAAG,MAAM,OAAO,CAAC,GAAG,CAAC;oBAC9C,GAAG,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,cAAe,CAAC,GAAG,EAAE,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC;oBAC9E,UAAU;wBACR,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,cAAe,CAAC,UAAU,EAAE,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC;wBACvF,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC,IAAI,CAAC;iBAC1B,CAAC,CAAC;gBACH,IAAI,GAAG,CAAC,KAAK,EAAE;oBAAE,OAAO,IAAI,CAAC;gBAC7B,KAAK,GAAG,WAAW,CAAC,iBAAiB,CAAC,KAAK,CAAC,EAAE,MAAM,CAAC,CAAC;gBACtD,MAAM,GAAG,YAAY,CAAC,CAAC,CAAC,WAAW,CAAC,iBAAiB,CAAC,YAAY,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;YACtF,CAAC;QACH,CAAC;aAAM,CAAC;YACN,WAAW,GAAG,GAAG,OAAO,CAAC,EAAE,UAAU,SAAS,EAAE,CAAC;YACjD,IAAI,WAAW,KAAK,IAAI,CAAC,eAAe,IAAI,IAAI,CAAC,YAAY,EAAE,CAAC;gBAC9D,KAAK,GAAG,IAAI,CAAC,YAAY,CAAC;YAC5B,CAAC;iBAAM,CAAC;gBACN,MAAM,KAAK,GAAoB,MAAM,IAAI,CAAC,IAAI,CAAC,WAAY,EAAE,CAAC;gBAC9D,IAAI,GAAG,CAAC,KAAK,EAAE;oBAAE,OAAO,IAAI,CAAC;gBAC7B,+DAA+D;gBAC/D,KAAK,GAAG,WAAW,CACjB,EAAE,GAAG,KAAK,EAAE,WAAW,EAAE,WAAW,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,KAAK,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,EAAE,EAClF,MAAM,CACP,CAAC;YACJ,CAAC;QACH,CAAC;QACD,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,WAAW,EAAE,CAAC;IACxC,CAAC;IAED,0DAA0D;IAC1D,IAAI;QACF,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC;QAC7B,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;QAChC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,gBAAgB,CAAC,CAAC;QACnC,IAAI,CAAC,aAAa,GAAG,IAAI,CAAC;QAC1B,IAAI,CAAC,eAAe,GAAG,IAAI,CAAC;QAC5B,IAAI,CAAC,YAAY,GAAG,IAAI,CAAC;QACzB,IAAI,CAAC,YAAY,GAAG,IAAI,CAAC;QACzB,IAAI,CAAC,gBAAgB,CAAC,KAAK,CAAC,CAAC;IAC/B,CAAC;IAEO,gBAAgB,CAAC,KAAc;QACrC,IAAI,KAAK,KAAK,IAAI,CAAC,aAAa;YAAE,OAAO;QACzC,IAAI,CAAC,aAAa,GAAG,KAAK,CAAC;QAC3B,IAAI,CAAC,IAAI,CAAC,oBAAoB,CAAC,KAAK,CAAC,CAAC;IACxC,CAAC;CACF;AAED,2CAA2C;AAC3C,SAAS,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAoC;IAC1D,OAAO,CAAC,CAAC,GAAG,GAAG,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,CAAC,CAAC;AACxC,CAAC;AAED,qGAAqG;AACrG,SAAS,YAAY,CAAC,IAAkC;IACtD,MAAM,GAAG,GAAG,IAAI,IAAI,IAAI,CAAC,IAAI,KAAK,aAAa,CAAC,CAAC,CAAC,qBAAqB,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,2BAA2B,CAAC,CAAC,CAAC,CAAC,CAAC;IACjH,OAAO,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;AAC7C,CAAC","sourcesContent":["import { colormapFromLut } from 'napari-js';\nimport type { Colormap, RGBA } from 'napari-js';\n\nimport type { Rgb } from '../../../contracts/colormap-lut';\nimport type { SpatialDataPort } from '../../../contracts/ports/spatial-data.port';\nimport type { SpatialViewState } from '../../../contracts/display-types';\nimport {\n  NO_CATEGORY,\n  SpatialColumn,\n  SpatialDataset,\n  SpatialPolygonTile,\n  SpatialPolygons,\n  isCategoricalColumn,\n} from '../../../contracts/spatial-dataset.contract';\nimport {\n  DEFAULT_CATEGORICAL_PALETTE,\n  MISSING_COLOR,\n  contrastWindow,\n  parseHex,\n  resolveCategoryColors,\n} from '../../../spatial/spatial-encoding';\nimport { SpatialSelectionMask } from '../../../spatial/spatial-selection';\nimport {\n  DataRect,\n  POLYGON_LEVEL_MIN_CELL_PX,\n  cellTypeColumnFor,\n  cellsShown,\n  polygonLevelFor,\n  tileId,\n  tilesInRect,\n  typicalCellDiameter,\n} from '../../../spatial/lod';\nimport { filterRings, mergePolygonTiles } from '../../../spatial/spatial-tile-merge';\nimport { ContrastWindowCache } from '../napari-spatial-encoding';\nimport type { CategoricalLookup, HiddenCodes } from './categorical-lookup';\nimport type { OrderedLayerGroups, TileGroup } from './layer-groups';\nimport type { PlanContext } from './plan-context';\n\nconst MAX_CELL_TILES = 48;\n\n/** The cells' colours as a shapes layer takes them: per-shape RGBA, values over a colormap, or\n *  one colour. */\ninterface CellColors {\n  values?: Float32Array;\n  colormap?: Colormap;\n  contrastLimits?: [number, number];\n  color?: RGBA;\n  faceColor?: Float32Array;\n}\n\n/** What the cell layers need from the service. */\nexport interface CellLayersHost {\n  /** The continuous LUT the view is using (so cells coloured by a gene match the markers). */\n  continuousLut(view: SpatialViewState): Rgb[];\n  /** Outlines appeared or disappeared: the markers' visibility follows. */\n  polygonsShownChanged(shown: boolean): void;\n}\n\n/**\n * The cell outlines of the 2D spatial view, at the polygon level the zoom calls for: a fill,\n * an outline or both (plus nucleus outlines for the \"both\" cell set), coloured by the view's\n * cell-colour mode, with switched-off groups left out of the geometry.\n *\n * Geometry and style are keyed apart, so a recolour (a new cell-type column, a selection)\n * rewrites the per-shape values of the existing layers and never re-expands the rings.\n */\nexport class CellLayers {\n  private polygonsShown = false;\n  /** Rings currently drawn and the (dataset, set, tiles) they came from. */\n  private currentRings: SpatialPolygonTile | null = null;\n  private cellGeometryKey: string | null = null;\n  private currentNuclei: SpatialPolygonTile | null = null;\n  private cellStyleKey: string | null = null;\n  /** Selection identity → revision, so a change key can name a selection cheaply. */\n  private lastSelection: SpatialSelectionMask | null = null;\n  private selectionRevision = 0;\n  /** Continuous colourings' windows, per (vector, clip, log): `contrastWindow` sorts every\n   *  value, and a selection or opacity change recolours with the vector unchanged (SPATIAL-12). */\n  private readonly contrastWindows = new ContrastWindowCache();\n\n  constructor(\n    private readonly port: SpatialDataPort,\n    private readonly groups: OrderedLayerGroups<TileGroup>,\n    private readonly lookup: CategoricalLookup,\n    private readonly host: CellLayersHost,\n  ) {}\n\n  /** True while outlines are on screen — the service hides its dots then. */\n  get outlinesShown(): boolean {\n    return this.polygonsShown;\n  }\n\n  /** The viewer went away (its layers with it): the outlines are no longer shown. */\n  detached(): void {\n    this.setPolygonsShown(false);\n  }\n\n  /** Draw the cells covering `rect` at the level `pxPerUnit` calls for, or drop them. */\n  async plan(\n    dataset: SpatialDataset,\n    view: SpatialViewState,\n    selection: SpatialSelectionMask,\n    rect: DataRect,\n    pxPerUnit: number,\n    ctx: PlanContext,\n  ): Promise<void> {\n    const tiled = dataset.polygonTiles;\n    const whole = !tiled && dataset.polygons && this.port.getPolygons;\n    if (!cellsShown(dataset, view) || (!tiled && !whole)) {\n      this.drop();\n      return;\n    }\n    const diameter = typicalCellDiameter(dataset.observations.radius);\n    // Whole-dataset rings have one level and no coarser fallback, so they are drawn as\n    // soon as a cell is big enough to read as a shape rather than a dot.\n    const level = tiled\n      ? polygonLevelFor(pxPerUnit, diameter, tiled.levels.length)\n      : pxPerUnit * diameter >= POLYGON_LEVEL_MIN_CELL_PX[2]\n        ? 0\n        : -1;\n    if (level < 0) {\n      this.drop();\n      return;\n    }\n\n    // Groups switched off in the list: their cells are left out of the geometry.\n    const hidden = await this.lookup.hiddenCodes(dataset, view);\n    if (ctx.stale()) return;\n    const label = view.cellSet === 'both' ? 'Cells and nuclei' : view.cellSet === 'nucleus' ? 'Nuclei' : 'Cells';\n    const geometry = await ctx.track(label, this.cellGeometry(dataset, view, rect, level, hidden, ctx));\n    if (!geometry) return;\n    const { rings, nuclei, geometryKey } = geometry;\n\n    const geometryChanged = geometryKey !== this.cellGeometryKey;\n    const styleKey = [\n      geometryKey,\n      view.cellColorMode,\n      view.cellColorGene,\n      view.cellSingleColor,\n      cellTypeColumnFor(dataset, view),\n      this.selectionRev(selection),\n      view.logScale,\n      view.percentileClip.join(),\n      JSON.stringify(view.continuousColormap),\n      view.cellDraw,\n      view.cellOpacity,\n    ].join('|');\n    const present = (['cellFill', 'cellOutline', 'nucleusOutline'] as const).some((g) => this.groups.shown(g));\n    if (!geometryChanged && styleKey === this.cellStyleKey && present) {\n      this.setPolygonsShown(true);\n      return;\n    }\n    const colors = await this.cellColors(dataset, view, selection, rings.observation);\n    if (ctx.stale()) return;\n\n    this.currentRings = rings;\n    this.currentNuclei = nuclei;\n    // A geometry missing a failed tile is drawn but not remembered, so the retry refetches it.\n    this.cellGeometryKey = ctx.incomplete ? null : geometryKey;\n    this.cellStyleKey = styleKey;\n    this.drawCells(dataset, view, geometry, colors, geometryChanged);\n    this.setPolygonsShown(true);\n  }\n\n  /**\n   * The cell layers: the fill and the outline the view's draw mode asks for, and with \"both\" the\n   * nucleus outlines over them. A geometry change builds new layers; a style change restyles them.\n   */\n  private drawCells(\n    dataset: SpatialDataset,\n    view: SpatialViewState,\n    { rings, nuclei }: { rings: SpatialPolygonTile; nuclei: SpatialPolygonTile | null },\n    colors: CellColors,\n    geometryChanged: boolean,\n  ): void {\n    const ref = dataset.imageRef;\n    const common = { scale: ref?.scale ?? [1, 1], translate: ref?.translate ?? [0, 0] } as const;\n    const fill = view.cellDraw !== 'outline';\n    const outline = view.cellDraw !== 'fill';\n\n    this.groups.upsertShapes('cellFill', fill, geometryChanged, rings, {\n      name: 'cells',\n      draw: 'fill',\n      opacity: view.cellOpacity,\n      ...colors,\n      ...common,\n    });\n    this.groups.upsertShapes(\n      'cellOutline',\n      outline,\n      geometryChanged,\n      rings,\n      fill\n        ? // Over a fill, a dark outline separates neighbours of the same type.\n          { name: 'cell outlines', draw: 'outline', color: [0.08, 0.08, 0.1, 1], opacity: 0.7, ...common }\n        : { name: 'cell outlines', draw: 'outline', opacity: 1, ...colors, ...common },\n    );\n    // \"Both\": nuclei outlined over the cells, light so they read against any fill.\n    if (nuclei) {\n      this.groups.upsertShapes('nucleusOutline', true, geometryChanged, nuclei, {\n        name: 'nucleus outlines',\n        draw: 'outline',\n        color: [0.95, 0.95, 0.98, 1],\n        opacity: 0.8,\n        ...common,\n      });\n    } else {\n      this.groups.drop('nucleusOutline');\n    }\n  }\n\n  private selectionRev(selection: SpatialSelectionMask): number {\n    if (selection !== this.lastSelection) {\n      this.lastSelection = selection;\n      this.selectionRevision++;\n    }\n    return this.selectionRevision;\n  }\n\n  /**\n   * The rings' colours by their owners, by the view's cell-colour mode (Xenium Explorer's \"Cell\n   * Color\"): one RGBA per shape for a grouping, values + colormap for a measurement, one colour\n   * for \"single\". A selection mutes what it leaves out.\n   */\n  private async cellColors(\n    dataset: SpatialDataset,\n    view: SpatialViewState,\n    selection: SpatialSelectionMask,\n    owners: Uint32Array,\n  ): Promise<CellColors> {\n    const muted = selection.count > 0 ? selection.mask : null;\n    const mode = view.cellColorMode;\n\n    if (mode === 'single') {\n      const [r, g, b] = parseHex(view.cellSingleColor);\n      return { color: [r / 255, g / 255, b / 255, 1] };\n    }\n\n    const continuous = async (raw: Float32Array, log: boolean) => {\n      const values = new Float32Array(owners.length);\n      for (let i = 0; i < owners.length; i++) {\n        const v = raw[owners[i]] ?? NaN;\n        values[i] = log ? Math.log1p(Math.max(0, v)) : v;\n      }\n      const [clipLo, clipHi] = view.percentileClip;\n      // Keyed by the SOURCE vector (the log copy would be new on every call), as the 3D cloud's.\n      const [lo, hi] = this.contrastWindows.get(raw, clipLo, clipHi, log, () =>\n        contrastWindow(log ? raw.map((v) => Math.log1p(Math.max(0, v))) : raw, clipLo, clipHi),\n      );\n      return {\n        values,\n        colormap: colormapFromLut('spatial-continuous', this.host.continuousLut(view)),\n        contrastLimits: [lo, hi] as [number, number],\n      };\n    };\n    if (mode === 'gene' && view.cellColorGene) {\n      return continuous(await this.port.getFeatureVector(view.cellColorGene), true);\n    }\n    if (mode === 'transcriptDensity' && dataset.columns.some((c) => c.name === 'transcript_density')) {\n      const column = await this.port.getColumn('transcript_density');\n      if (!isCategoricalColumn(column)) return continuous(column.values, false);\n    }\n\n    const name =\n      mode === 'segmentation' && dataset.columns.some((c) => c.name === 'segmentation_method')\n        ? 'segmentation_method'\n        : cellTypeColumnFor(dataset, view);\n    const codes = name ? await this.lookup.codes(name) : null;\n    const palette = categoryRgba(codes?.meta ?? null);\n    const missing = rgba01(MISSING_COLOR);\n    // One RGBA per shape (napari Shapes' `face_color`): any number of categories keeps its own\n    // colour, where a colormap band per category ran out of LUT entries past ~127.\n    const faceColor = new Float32Array(owners.length * 4);\n    for (let i = 0; i < owners.length; i++) {\n      const o = owners[i];\n      const code = !codes || (muted && !muted[o]) ? NO_CATEGORY : codes.codes[o];\n      faceColor.set(palette[code] ?? missing, i * 4);\n    }\n    return { faceColor };\n  }\n\n  /**\n   * The cell rings (and, for \"both\", the nucleus rings) covering `rect` at `level`, minus\n   * the hidden groups — reused when nothing that decides them changed. Null when the\n   * view went stale or the dataset has no set to draw.\n   */\n  private async cellGeometry(\n    dataset: SpatialDataset,\n    view: SpatialViewState,\n    rect: DataRect,\n    level: number,\n    hidden: HiddenCodes | null,\n    ctx: PlanContext,\n  ): Promise<{ rings: SpatialPolygonTile; nuclei: SpatialPolygonTile | null; geometryKey: string } | null> {\n    const tiled = dataset.polygonTiles;\n    const hiddenKey = view.hiddenGroups.join('\\u0001');\n    let rings: SpatialPolygonTile;\n    let nuclei: SpatialPolygonTile | null = null;\n    let geometryKey: string;\n    if (tiled) {\n      const both = view.cellSet === 'both';\n      const set =\n        !both && view.cellSet && tiled.sets.some((s) => s.name === view.cellSet)\n          ? view.cellSet\n          : (tiled.defaultSet ?? tiled.sets[0]?.name);\n      if (!set) return null;\n      const nucleusSet = both ? tiled.sets.find((s) => s.name !== set)?.name : undefined;\n      const keys = tilesInRect(rect, level, tiled.levels, tiled.bounds, MAX_CELL_TILES);\n      geometryKey = `${dataset.id}|${set}|${nucleusSet ?? ''}|${hiddenKey}|${keys.map(tileId).join(',')}`;\n      if (geometryKey === this.cellGeometryKey && this.currentRings) {\n        rings = this.currentRings;\n        nuclei = this.currentNuclei;\n      } else {\n        const [tiles, nucleusTiles] = await Promise.all([\n          ctx.fetchAll(keys, (k) => this.port.getPolygonTile!(set, k.level, k.gx, k.gy)),\n          nucleusSet\n            ? ctx.fetchAll(keys, (k) => this.port.getPolygonTile!(nucleusSet, k.level, k.gx, k.gy))\n            : Promise.resolve(null),\n        ]);\n        if (ctx.stale()) return null;\n        rings = filterRings(mergePolygonTiles(tiles), hidden);\n        nuclei = nucleusTiles ? filterRings(mergePolygonTiles(nucleusTiles), hidden) : null;\n      }\n    } else {\n      geometryKey = `${dataset.id}|whole|${hiddenKey}`;\n      if (geometryKey === this.cellGeometryKey && this.currentRings) {\n        rings = this.currentRings;\n      } else {\n        const polys: SpatialPolygons = await this.port.getPolygons!();\n        if (ctx.stale()) return null;\n        // Whole-dataset rings are index-aligned with the observations.\n        rings = filterRings(\n          { ...polys, observation: Uint32Array.from({ length: polys.count }, (_v, i) => i) },\n          hidden,\n        );\n      }\n    }\n    return { rings, nuclei, geometryKey };\n  }\n\n  /** Remove the cell layers and forget what they showed. */\n  drop(): void {\n    this.groups.drop('cellFill');\n    this.groups.drop('cellOutline');\n    this.groups.drop('nucleusOutline');\n    this.currentNuclei = null;\n    this.cellGeometryKey = null;\n    this.cellStyleKey = null;\n    this.currentRings = null;\n    this.setPolygonsShown(false);\n  }\n\n  private setPolygonsShown(shown: boolean): void {\n    if (shown === this.polygonsShown) return;\n    this.polygonsShown = shown;\n    this.host.polygonsShownChanged(shown);\n  }\n}\n\n/** An 8-bit RGB as an opaque 0..1 RGBA. */\nfunction rgba01([r, g, b]: readonly [number, number, number]): RGBA {\n  return [r / 255, g / 255, b / 255, 1];\n}\n\n/** A grouping's category colours, as 0..1 RGBA by category code (one default without a grouping). */\nfunction categoryRgba(meta: SpatialColumn['meta'] | null): RGBA[] {\n  const hex = meta && meta.kind === 'categorical' ? resolveCategoryColors(meta) : [DEFAULT_CATEGORICAL_PALETTE[0]];\n  return hex.map((h) => rgba01(parseHex(h)));\n}\n"]}
|
|
@@ -0,0 +1,144 @@
|
|
|
1
|
+
import { colormapFromLut } from 'napari-js';
|
|
2
|
+
import { INFERNO_LUT } from 'napari-js/colormaps';
|
|
3
|
+
import { ALL_GENES } from '../../../contracts/ports/spatial-data.port';
|
|
4
|
+
import { lutFor } from '../../../spatial/spatial-encoding';
|
|
5
|
+
import { visibleArea, visibleDataRect } from '../../../spatial/lod';
|
|
6
|
+
import { densityAutoRange } from '../../../spatial/density-raster';
|
|
7
|
+
/**
|
|
8
|
+
* The transcript density image of the 2D spatial view: the visible genes' summed density
|
|
9
|
+
* raster, one scalar layer in the `density` group, windowed and coloured on the GPU.
|
|
10
|
+
*
|
|
11
|
+
* Bins at or below the window's low end are transparent (`transparentBelow`), so a window,
|
|
12
|
+
* colormap or opacity change is a uniform or LUT update of the same layer: only new genes or a
|
|
13
|
+
* new bin size fetch and upload a raster.
|
|
14
|
+
*/
|
|
15
|
+
export class DensityLayer {
|
|
16
|
+
constructor(port, groups, changed) {
|
|
17
|
+
this.port = port;
|
|
18
|
+
this.groups = groups;
|
|
19
|
+
this.changed = changed;
|
|
20
|
+
/** The density window in use and the densest bin, for the panel's threshold control. */
|
|
21
|
+
this.stats = null;
|
|
22
|
+
/** The drawn raster in transcripts per unit area, its densest bin and its auto window. */
|
|
23
|
+
this.raster = null;
|
|
24
|
+
/** The colormap the layer was given, so an unchanged one does not rebuild its LUT. */
|
|
25
|
+
this.colormapKey = null;
|
|
26
|
+
}
|
|
27
|
+
/** Draw the view's density, or drop it; an unchanged (genes, bin, window, colormap) is a no-op. */
|
|
28
|
+
async plan(dataset, view, ctx) {
|
|
29
|
+
const hiddenGenes = new Set(view.transcriptHiddenGenes);
|
|
30
|
+
const genes = view.transcriptAllGenes ? [ALL_GENES] : view.transcriptGenes.filter((g) => !hiddenGenes.has(g));
|
|
31
|
+
if (!dataset.density || !this.port.getDensity || view.transcriptMode !== 'density' || !genes.length) {
|
|
32
|
+
this.groups.drop('density');
|
|
33
|
+
this.stats = null;
|
|
34
|
+
this.raster = null;
|
|
35
|
+
return;
|
|
36
|
+
}
|
|
37
|
+
// The raster's key: what it is a raster OF. Window, colormap and opacity are the layer's style.
|
|
38
|
+
const key = [dataset.id, genes.join(','), view.densityBin].join('|');
|
|
39
|
+
// `shown`, not `has`: a stitched slice re-render clears the layer list, and the key alone
|
|
40
|
+
// would call the cleared layer drawn.
|
|
41
|
+
if (key !== this.groups.key('density') || !this.groups.shown('density') || !this.raster) {
|
|
42
|
+
const raster = await ctx.track('Transcript density', this.port.getDensity(genes, view.densityBin));
|
|
43
|
+
if (ctx.stale())
|
|
44
|
+
return;
|
|
45
|
+
// Bins drawn as squares, as Xenium Explorer does; the window is in transcripts/µm².
|
|
46
|
+
const meta = raster.meta;
|
|
47
|
+
const area = meta.gridSize[0] * meta.gridSize[1];
|
|
48
|
+
const perArea = raster.values.map((v) => v / area);
|
|
49
|
+
this.raster = {
|
|
50
|
+
perArea,
|
|
51
|
+
max: perArea.reduce((m, v) => (v > m ? v : m), 0),
|
|
52
|
+
auto: densityAutoRange(perArea),
|
|
53
|
+
};
|
|
54
|
+
const ref = dataset.imageRef;
|
|
55
|
+
const sx = ref?.scale?.[0] ?? 1;
|
|
56
|
+
const sy = ref?.scale?.[1] ?? 1;
|
|
57
|
+
const layer = this.groups.viewer.addImage({ kind: 'typed', width: meta.cols, height: meta.rows, channels: 1, dtype: 'float32', data: perArea }, {
|
|
58
|
+
name: `density · ${view.transcriptAllGenes ? 'all genes' : genes.join(', ')}`,
|
|
59
|
+
scale: [meta.gridSize[0] * sx, meta.gridSize[1] * sy],
|
|
60
|
+
translate: [
|
|
61
|
+
meta.origin[0] * sx + (ref?.translate?.[0] ?? 0),
|
|
62
|
+
meta.origin[1] * sy + (ref?.translate?.[1] ?? 0),
|
|
63
|
+
],
|
|
64
|
+
// Xenium Explorer's "scale threshold": empty tissue shows the image under it.
|
|
65
|
+
transparentBelow: true,
|
|
66
|
+
blending: 'translucent',
|
|
67
|
+
interpolation: 'nearest',
|
|
68
|
+
});
|
|
69
|
+
this.colormapKey = null;
|
|
70
|
+
this.groups.setKey('density', key);
|
|
71
|
+
this.groups.replace('density', layer);
|
|
72
|
+
}
|
|
73
|
+
this.restyle(this.groups.layer('density'), view);
|
|
74
|
+
}
|
|
75
|
+
/** Window, colour and opacity onto the drawn layer: uniforms and a LUT, no re-upload. */
|
|
76
|
+
restyle(layer, view) {
|
|
77
|
+
const raster = this.raster;
|
|
78
|
+
const [lo, hi] = view.densityRange ?? raster.auto;
|
|
79
|
+
layer.contrastLimits = [lo, hi];
|
|
80
|
+
layer.opacity = view.densityOpacity;
|
|
81
|
+
const colormapKey = JSON.stringify(view.densityColormap ?? null);
|
|
82
|
+
if (colormapKey !== this.colormapKey) {
|
|
83
|
+
this.colormapKey = colormapKey;
|
|
84
|
+
layer.colormap = colormapFromLut('transcript-density', lutFor(view.densityColormap ?? INFERNO_LUT));
|
|
85
|
+
}
|
|
86
|
+
this.groups.viewer.requestRender();
|
|
87
|
+
const stats = { lo, hi, max: raster.max };
|
|
88
|
+
if (this.stats?.lo === lo && this.stats.hi === hi && this.stats.max === raster.max)
|
|
89
|
+
return;
|
|
90
|
+
this.stats = stats;
|
|
91
|
+
this.changed(stats);
|
|
92
|
+
}
|
|
93
|
+
}
|
|
94
|
+
/**
|
|
95
|
+
* Transcripts in view for the visible genes, against the marker budget — it tells the user
|
|
96
|
+
* whether the budget will force grouping. Caches the per-gene dataset totals for the latest
|
|
97
|
+
* gene set.
|
|
98
|
+
*/
|
|
99
|
+
export class TranscriptEstimator {
|
|
100
|
+
constructor(port, changed) {
|
|
101
|
+
this.port = port;
|
|
102
|
+
this.changed = changed;
|
|
103
|
+
/** Per-gene dataset totals for the in-view estimate, for the latest gene set. */
|
|
104
|
+
this.countsCache = null;
|
|
105
|
+
}
|
|
106
|
+
/**
|
|
107
|
+
* Transcripts in view for the visible genes: each gene's dataset total times the share
|
|
108
|
+
* of the tissue on screen. An estimate — expression is not uniform — which is also what
|
|
109
|
+
* Xenium Explorer shows; it tells the user whether the budget will force grouping.
|
|
110
|
+
*/
|
|
111
|
+
async plan(dataset, view, viewer, w, h, ctx) {
|
|
112
|
+
const tiles = dataset.transcriptTiles;
|
|
113
|
+
if (!tiles || !this.port.getTranscriptCounts || view.transcriptMode === 'off') {
|
|
114
|
+
this.changed(null);
|
|
115
|
+
return;
|
|
116
|
+
}
|
|
117
|
+
const hiddenGenes = new Set(view.transcriptHiddenGenes);
|
|
118
|
+
const genes = view.transcriptAllGenes ? [] : view.transcriptGenes.filter((g) => !hiddenGenes.has(g));
|
|
119
|
+
const key = `${dataset.id}|${genes.join(',')}`;
|
|
120
|
+
if (this.countsCache?.key !== key) {
|
|
121
|
+
this.countsCache = { key, counts: this.port.getTranscriptCounts(genes) };
|
|
122
|
+
}
|
|
123
|
+
let counts;
|
|
124
|
+
try {
|
|
125
|
+
counts = await this.countsCache.counts;
|
|
126
|
+
}
|
|
127
|
+
catch {
|
|
128
|
+
this.countsCache = null;
|
|
129
|
+
return;
|
|
130
|
+
}
|
|
131
|
+
if (ctx.stale())
|
|
132
|
+
return;
|
|
133
|
+
const inView = visibleDataRect(viewer.camera.center, viewer.camera.zoom, w, h, dataset.imageRef, 0);
|
|
134
|
+
if (!inView)
|
|
135
|
+
return;
|
|
136
|
+
const b = counts.bounds;
|
|
137
|
+
const share = Math.min(1, visibleArea(inView, b) / Math.max(1, (b[2] - b[0]) * (b[3] - b[1])));
|
|
138
|
+
const selected = view.transcriptAllGenes
|
|
139
|
+
? counts.total
|
|
140
|
+
: genes.reduce((sum, g) => sum + (counts.counts[g] ?? 0), 0);
|
|
141
|
+
this.changed({ points: Math.round(selected * share), max: view.transcriptBudget });
|
|
142
|
+
}
|
|
143
|
+
}
|
|
144
|
+
//# sourceMappingURL=data:application/json;base64,{"version":3,"file":"density-layer.js","sourceRoot":"","sources":["../../../../../../src/lib/implementations/napari-js/spatial-tiles/density-layer.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,eAAe,EAAE,MAAM,WAAW,CAAC;AAE5C,OAAO,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAElD,OAAO,EAAE,SAAS,EAAwB,MAAM,4CAA4C,CAAC;AAG7F,OAAO,EAAE,MAAM,EAAE,MAAM,mCAAmC,CAAC;AAC3D,OAAO,EAAE,WAAW,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACpE,OAAO,EAAE,gBAAgB,EAAE,MAAM,iCAAiC,CAAC;AAmBnE;;;;;;;GAOG;AACH,MAAM,OAAO,YAAY;IAQvB,YACmB,IAAqB,EACrB,MAAqC,EACrC,OAAsC;QAFtC,SAAI,GAAJ,IAAI,CAAiB;QACrB,WAAM,GAAN,MAAM,CAA+B;QACrC,YAAO,GAAP,OAAO,CAA+B;QAVzD,wFAAwF;QACxF,UAAK,GAAwB,IAAI,CAAC;QAClC,0FAA0F;QAClF,WAAM,GAA0E,IAAI,CAAC;QAC7F,sFAAsF;QAC9E,gBAAW,GAAkB,IAAI,CAAC;IAMvC,CAAC;IAEJ,mGAAmG;IACnG,KAAK,CAAC,IAAI,CAAC,OAAuB,EAAE,IAAsB,EAAE,GAAgB;QAC1E,MAAM,WAAW,GAAG,IAAI,GAAG,CAAC,IAAI,CAAC,qBAAqB,CAAC,CAAC;QACxD,MAAM,KAAK,GAAG,IAAI,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,eAAe,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAC9G,IAAI,CAAC,OAAO,CAAC,OAAO,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,IAAI,IAAI,CAAC,cAAc,KAAK,SAAS,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC;YACpG,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;YAC5B,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC;YAClB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC;YACnB,OAAO;QACT,CAAC;QACD,gGAAgG;QAChG,MAAM,GAAG,GAAG,CAAC,OAAO,CAAC,EAAE,EAAE,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACrE,0FAA0F;QAC1F,sCAAsC;QACtC,IAAI,GAAG,KAAK,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC;YACxF,MAAM,MAAM,GAAG,MAAM,GAAG,CAAC,KAAK,CAAC,oBAAoB,EAAE,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC;YACnG,IAAI,GAAG,CAAC,KAAK,EAAE;gBAAE,OAAO;YAExB,oFAAoF;YACpF,MAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC;YACzB,MAAM,IAAI,GAAG,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC;YACjD,MAAM,OAAO,GAAG,MAAM,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC;YACnD,IAAI,CAAC,MAAM,GAAG;gBACZ,OAAO;gBACP,GAAG,EAAE,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;gBACjD,IAAI,EAAE,gBAAgB,CAAC,OAAO,CAAC;aAChC,CAAC;YACF,MAAM,GAAG,GAAG,OAAO,CAAC,QAAQ,CAAC;YAC7B,MAAM,EAAE,GAAG,GAAG,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;YAChC,MAAM,EAAE,GAAG,GAAG,EAAE,KAAK,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;YAChC,MAAM,KAAK,GAAe,IAAI,CAAC,MAAM,CAAC,MAAO,CAAC,QAAQ,CACpD,EAAE,IAAI,EAAE,OAAO,EAAE,KAAK,EAAE,IAAI,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,CAAC,IAAI,EAAE,QAAQ,EAAE,CAAC,EAAE,KAAK,EAAE,SAAS,EAAE,IAAI,EAAE,OAAO,EAAE,EACpG;gBACE,IAAI,EAAE,aAAa,IAAI,CAAC,kBAAkB,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE;gBAC7E,KAAK,EAAE,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,EAAE,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;gBACrD,SAAS,EAAE;oBACT,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,EAAE,SAAS,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;oBAChD,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,EAAE,SAAS,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;iBACjD;gBACD,8EAA8E;gBAC9E,gBAAgB,EAAE,IAAI;gBACtB,QAAQ,EAAE,aAAa;gBACvB,aAAa,EAAE,SAAS;aACzB,CACF,CAAC;YACF,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC;YACxB,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC;YACnC,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;QACxC,CAAC;QACD,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,SAAS,CAAe,EAAE,IAAI,CAAC,CAAC;IACjE,CAAC;IAED,yFAAyF;IACjF,OAAO,CAAC,KAAiB,EAAE,IAAsB;QACvD,MAAM,MAAM,GAAG,IAAI,CAAC,MAAO,CAAC;QAC5B,MAAM,CAAC,EAAE,EAAE,EAAE,CAAC,GAAG,IAAI,CAAC,YAAY,IAAI,MAAM,CAAC,IAAI,CAAC;QAClD,KAAK,CAAC,cAAc,GAAG,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC;QAChC,KAAK,CAAC,OAAO,GAAG,IAAI,CAAC,cAAc,CAAC;QACpC,MAAM,WAAW,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,eAAe,IAAI,IAAI,CAAC,CAAC;QACjE,IAAI,WAAW,KAAK,IAAI,CAAC,WAAW,EAAE,CAAC;YACrC,IAAI,CAAC,WAAW,GAAG,WAAW,CAAC;YAC/B,KAAK,CAAC,QAAQ,GAAG,eAAe,CAAC,oBAAoB,EAAE,MAAM,CAAC,IAAI,CAAC,eAAe,IAAI,WAAW,CAAC,CAAC,CAAC;QACtG,CAAC;QACD,IAAI,CAAC,MAAM,CAAC,MAAO,CAAC,aAAa,EAAE,CAAC;QACpC,MAAM,KAAK,GAAG,EAAE,EAAE,EAAE,EAAE,EAAE,GAAG,EAAE,MAAM,CAAC,GAAG,EAAE,CAAC;QAC1C,IAAI,IAAI,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,IAAI,IAAI,CAAC,KAAK,CAAC,EAAE,KAAK,EAAE,IAAI,IAAI,CAAC,KAAK,CAAC,GAAG,KAAK,MAAM,CAAC,GAAG;YAAE,OAAO;QAC3F,IAAI,CAAC,KAAK,GAAG,KAAK,CAAC;QACnB,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC;IACtB,CAAC;CACF;AAED;;;;GAIG;AACH,MAAM,OAAO,mBAAmB;IAI9B,YACmB,IAAqB,EACrB,OAAsD;QADtD,SAAI,GAAJ,IAAI,CAAiB;QACrB,YAAO,GAAP,OAAO,CAA+C;QALzE,iFAAiF;QACzE,gBAAW,GAAqE,IAAI,CAAC;IAK1F,CAAC;IAEJ;;;;OAIG;IACH,KAAK,CAAC,IAAI,CACR,OAAuB,EACvB,IAAsB,EACtB,MAAc,EACd,CAAS,EACT,CAAS,EACT,GAAgB;QAEhB,MAAM,KAAK,GAAG,OAAO,CAAC,eAAe,CAAC;QACtC,IAAI,CAAC,KAAK,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,mBAAmB,IAAI,IAAI,CAAC,cAAc,KAAK,KAAK,EAAE,CAAC;YAC9E,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;YACnB,OAAO;QACT,CAAC;QACD,MAAM,WAAW,GAAG,IAAI,GAAG,CAAC,IAAI,CAAC,qBAAqB,CAAC,CAAC;QACxD,MAAM,KAAK,GAAG,IAAI,CAAC,kBAAkB,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,eAAe,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACrG,MAAM,GAAG,GAAG,GAAG,OAAO,CAAC,EAAE,IAAI,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC;QAC/C,IAAI,IAAI,CAAC,WAAW,EAAE,GAAG,KAAK,GAAG,EAAE,CAAC;YAClC,IAAI,CAAC,WAAW,GAAG,EAAE,GAAG,EAAE,MAAM,EAAE,IAAI,CAAC,IAAI,CAAC,mBAAmB,CAAC,KAAK,CAAC,EAAE,CAAC;QAC3E,CAAC;QACD,IAAI,MAA+B,CAAC;QACpC,IAAI,CAAC;YACH,MAAM,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,MAAM,CAAC;QACzC,CAAC;QAAC,MAAM,CAAC;YACP,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC;YACxB,OAAO;QACT,CAAC;QACD,IAAI,GAAG,CAAC,KAAK,EAAE;YAAE,OAAO;QACxB,MAAM,MAAM,GAAG,eAAe,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,CAAC,IAAI,EAAE,CAAC,EAAE,CAAC,EAAE,OAAO,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC;QACpG,IAAI,CAAC,MAAM;YAAE,OAAO;QACpB,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC;QACxB,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,WAAW,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAC/F,MAAM,QAAQ,GAAG,IAAI,CAAC,kBAAkB;YACtC,CAAC,CAAC,MAAM,CAAC,KAAK;YACd,CAAC,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;QAC/D,IAAI,CAAC,OAAO,CAAC,EAAE,MAAM,EAAE,IAAI,CAAC,KAAK,CAAC,QAAQ,GAAG,KAAK,CAAC,EAAE,GAAG,EAAE,IAAI,CAAC,gBAAgB,EAAE,CAAC,CAAC;IACrF,CAAC;CACF","sourcesContent":["import { colormapFromLut } from 'napari-js';\nimport type { ImageLayer, Viewer } from 'napari-js';\nimport { INFERNO_LUT } from 'napari-js/colormaps';\n\nimport { ALL_GENES, type SpatialDataPort } from '../../../contracts/ports/spatial-data.port';\nimport type { SpatialViewState } from '../../../contracts/display-types';\nimport type { SpatialDataset, SpatialTranscriptCounts } from '../../../contracts/spatial-dataset.contract';\nimport { lutFor } from '../../../spatial/spatial-encoding';\nimport { visibleArea, visibleDataRect } from '../../../spatial/lod';\nimport { densityAutoRange } from '../../../spatial/density-raster';\nimport type { OrderedLayerGroups, TileGroup } from './layer-groups';\nimport type { PlanContext } from './plan-context';\n\n/** The density window in use and the densest bin (transcripts per unit area). */\nexport interface DensityStats {\n  lo: number;\n  hi: number;\n  max: number;\n}\n\n/** Xenium Explorer's \"Estimated Transcript Points\". */\nexport interface TranscriptEstimate {\n  /** Transcripts of the visible genes estimated to be in view. */\n  points: number;\n  /** The marker budget. */\n  max: number;\n}\n\n/**\n * The transcript density image of the 2D spatial view: the visible genes' summed density\n * raster, one scalar layer in the `density` group, windowed and coloured on the GPU.\n *\n * Bins at or below the window's low end are transparent (`transparentBelow`), so a window,\n * colormap or opacity change is a uniform or LUT update of the same layer: only new genes or a\n * new bin size fetch and upload a raster.\n */\nexport class DensityLayer {\n  /** The density window in use and the densest bin, for the panel's threshold control. */\n  stats: DensityStats | null = null;\n  /** The drawn raster in transcripts per unit area, its densest bin and its auto window. */\n  private raster: { perArea: Float32Array; max: number; auto: [number, number] } | null = null;\n  /** The colormap the layer was given, so an unchanged one does not rebuild its LUT. */\n  private colormapKey: string | null = null;\n\n  constructor(\n    private readonly port: SpatialDataPort,\n    private readonly groups: OrderedLayerGroups<TileGroup>,\n    private readonly changed: (stats: DensityStats) => void,\n  ) {}\n\n  /** Draw the view's density, or drop it; an unchanged (genes, bin, window, colormap) is a no-op. */\n  async plan(dataset: SpatialDataset, view: SpatialViewState, ctx: PlanContext): Promise<void> {\n    const hiddenGenes = new Set(view.transcriptHiddenGenes);\n    const genes = view.transcriptAllGenes ? [ALL_GENES] : view.transcriptGenes.filter((g) => !hiddenGenes.has(g));\n    if (!dataset.density || !this.port.getDensity || view.transcriptMode !== 'density' || !genes.length) {\n      this.groups.drop('density');\n      this.stats = null;\n      this.raster = null;\n      return;\n    }\n    // The raster's key: what it is a raster OF. Window, colormap and opacity are the layer's style.\n    const key = [dataset.id, genes.join(','), view.densityBin].join('|');\n    // `shown`, not `has`: a stitched slice re-render clears the layer list, and the key alone\n    // would call the cleared layer drawn.\n    if (key !== this.groups.key('density') || !this.groups.shown('density') || !this.raster) {\n      const raster = await ctx.track('Transcript density', this.port.getDensity(genes, view.densityBin));\n      if (ctx.stale()) return;\n\n      // Bins drawn as squares, as Xenium Explorer does; the window is in transcripts/µm².\n      const meta = raster.meta;\n      const area = meta.gridSize[0] * meta.gridSize[1];\n      const perArea = raster.values.map((v) => v / area);\n      this.raster = {\n        perArea,\n        max: perArea.reduce((m, v) => (v > m ? v : m), 0),\n        auto: densityAutoRange(perArea),\n      };\n      const ref = dataset.imageRef;\n      const sx = ref?.scale?.[0] ?? 1;\n      const sy = ref?.scale?.[1] ?? 1;\n      const layer: ImageLayer = this.groups.viewer!.addImage(\n        { kind: 'typed', width: meta.cols, height: meta.rows, channels: 1, dtype: 'float32', data: perArea },\n        {\n          name: `density · ${view.transcriptAllGenes ? 'all genes' : genes.join(', ')}`,\n          scale: [meta.gridSize[0] * sx, meta.gridSize[1] * sy],\n          translate: [\n            meta.origin[0] * sx + (ref?.translate?.[0] ?? 0),\n            meta.origin[1] * sy + (ref?.translate?.[1] ?? 0),\n          ],\n          // Xenium Explorer's \"scale threshold\": empty tissue shows the image under it.\n          transparentBelow: true,\n          blending: 'translucent',\n          interpolation: 'nearest',\n        },\n      );\n      this.colormapKey = null;\n      this.groups.setKey('density', key);\n      this.groups.replace('density', layer);\n    }\n    this.restyle(this.groups.layer('density') as ImageLayer, view);\n  }\n\n  /** Window, colour and opacity onto the drawn layer: uniforms and a LUT, no re-upload. */\n  private restyle(layer: ImageLayer, view: SpatialViewState): void {\n    const raster = this.raster!;\n    const [lo, hi] = view.densityRange ?? raster.auto;\n    layer.contrastLimits = [lo, hi];\n    layer.opacity = view.densityOpacity;\n    const colormapKey = JSON.stringify(view.densityColormap ?? null);\n    if (colormapKey !== this.colormapKey) {\n      this.colormapKey = colormapKey;\n      layer.colormap = colormapFromLut('transcript-density', lutFor(view.densityColormap ?? INFERNO_LUT));\n    }\n    this.groups.viewer!.requestRender();\n    const stats = { lo, hi, max: raster.max };\n    if (this.stats?.lo === lo && this.stats.hi === hi && this.stats.max === raster.max) return;\n    this.stats = stats;\n    this.changed(stats);\n  }\n}\n\n/**\n * Transcripts in view for the visible genes, against the marker budget — it tells the user\n * whether the budget will force grouping. Caches the per-gene dataset totals for the latest\n * gene set.\n */\nexport class TranscriptEstimator {\n  /** Per-gene dataset totals for the in-view estimate, for the latest gene set. */\n  private countsCache: { key: string; counts: Promise<SpatialTranscriptCounts> } | null = null;\n\n  constructor(\n    private readonly port: SpatialDataPort,\n    private readonly changed: (estimate: TranscriptEstimate | null) => void,\n  ) {}\n\n  /**\n   * Transcripts in view for the visible genes: each gene's dataset total times the share\n   * of the tissue on screen. An estimate — expression is not uniform — which is also what\n   * Xenium Explorer shows; it tells the user whether the budget will force grouping.\n   */\n  async plan(\n    dataset: SpatialDataset,\n    view: SpatialViewState,\n    viewer: Viewer,\n    w: number,\n    h: number,\n    ctx: PlanContext,\n  ): Promise<void> {\n    const tiles = dataset.transcriptTiles;\n    if (!tiles || !this.port.getTranscriptCounts || view.transcriptMode === 'off') {\n      this.changed(null);\n      return;\n    }\n    const hiddenGenes = new Set(view.transcriptHiddenGenes);\n    const genes = view.transcriptAllGenes ? [] : view.transcriptGenes.filter((g) => !hiddenGenes.has(g));\n    const key = `${dataset.id}|${genes.join(',')}`;\n    if (this.countsCache?.key !== key) {\n      this.countsCache = { key, counts: this.port.getTranscriptCounts(genes) };\n    }\n    let counts: SpatialTranscriptCounts;\n    try {\n      counts = await this.countsCache.counts;\n    } catch {\n      this.countsCache = null;\n      return;\n    }\n    if (ctx.stale()) return;\n    const inView = visibleDataRect(viewer.camera.center, viewer.camera.zoom, w, h, dataset.imageRef, 0);\n    if (!inView) return;\n    const b = counts.bounds;\n    const share = Math.min(1, visibleArea(inView, b) / Math.max(1, (b[2] - b[0]) * (b[3] - b[1])));\n    const selected = view.transcriptAllGenes\n      ? counts.total\n      : genes.reduce((sum, g) => sum + (counts.counts[g] ?? 0), 0);\n    this.changed({ points: Math.round(selected * share), max: view.transcriptBudget });\n  }\n}\n"]}
|