@jax-data-science/sci-image-visualizer 0.8.0 → 0.8.2

package/lib/toolbar/toolbar.component.d.ts

@@ -21,6 +21,10 @@ import * as i0 from "@angular/core";
 export declare class ToolbarComponent implements OnChanges {
     /** Current image (gates which control groups are shown). */
     imageInfo: IImageInfo | undefined;
+    /** A spatial dataset is on offer: its plot modes are a choice even with no image loaded. */
+    hasSpatialDataset: boolean;
+    /** Whether the plot-type dropdown shows: for an image, or a spatial dataset with none. */
+    get showPlotTypes(): boolean;
     /** Plot types the active backend advertises, then any contributed modes. */
     plotTypeOptions: PlotTypeOption[];
     /** The selector's value: a built-in type or a contributed mode's id. */
@@ -250,5 +254,5 @@ export declare class ToolbarComponent implements OnChanges {
     get isIntensityCapable(): boolean;
     showHelp(): void;
     static ɵfac: i0.ɵɵFactoryDeclaration<ToolbarComponent, never>;
-    static ɵcmp: i0.ɵɵComponentDeclaration<ToolbarComponent, "plotting-toolbar", never, { "imageInfo": { "alias": "imageInfo"; "required": false; }; "plotTypeOptions": { "alias": "plotTypeOptions"; "required": false; }; "selectedPlotType": { "alias": "selectedPlotType"; "required": false; }; "basePlotType": { "alias": "basePlotType"; "required": false; }; "isoRange": { "alias": "isoRange"; "required": false; }; "maxIndex": { "alias": "maxIndex"; "required": false; }; "zIndex": { "alias": "zIndex"; "required": false; }; "isHeatmap": { "alias": "isHeatmap"; "required": false; }; "is3dRegions": { "alias": "is3dRegions"; "required": false; }; "activeDragMode": { "alias": "activeDragMode"; "required": false; }; "activeSurface3dMode": { "alias": "activeSurface3dMode"; "required": false; }; "axesVisible": { "alias": "axesVisible"; "required": false; }; "wireframeActive": { "alias": "wireframeActive"; "required": false; }; "resolutionScale": { "alias": "resolutionScale"; "required": false; }; "wandSensitivity": { "alias": "wandSensitivity"; "required": false; }; "brushSize": { "alias": "brushSize"; "required": false; }; "vertexEraserRadius": { "alias": "vertexEraserRadius"; "required": false; }; "canUndo": { "alias": "canUndo"; "required": false; }; "canRedo": { "alias": "canRedo"; "required": false; }; "stackOptions": { "alias": "stackOptions"; "required": false; }; "tools": { "alias": "tools"; "required": false; }; "imageSmoothingEnabled": { "alias": "imageSmoothingEnabled"; "required": false; }; "samModels": { "alias": "samModels"; "required": false; }; "samModelId": { "alias": "samModelId"; "required": false; }; "contributedTools": { "alias": "contributedTools"; "required": false; }; "dialogTools": { "alias": "dialogTools"; "required": false; }; "openDialogToolId": { "alias": "openDialogToolId"; "required": false; }; "toolModelIds": { "alias": "toolModelIds"; "required": false; }; }, { "selectPlotType": "selectPlotType"; "addProfileLine": "addProfileLine"; "toggleImageSmoothing": "toggleImageSmoothing"; "isoRangeChange": "isoRangeChange"; "openChannelHistogram": "openChannelHistogram"; "openSpatialControls": "openSpatialControls"; "openRegionEditor": "openRegionEditor"; "selectStackOption": "selectStackOption"; "zScrub": "zScrub"; "zSlide": "zSlide"; "zIndexInput": "zIndexInput"; "reloadAndPlot": "reloadAndPlot"; "downloadImage": "downloadImage"; "autoscaleImage": "autoscaleImage"; "toggleDragMode": "toggleDragMode"; "zoomIn": "zoomIn"; "zoomOut": "zoomOut"; "toggleSurface3dMode": "toggleSurface3dMode"; "resetSurfaceCamera": "resetSurfaceCamera"; "toggleAxes": "toggleAxes"; "toggleWireframe": "toggleWireframe"; "selectResolution": "selectResolution"; "deleteRegion": "deleteRegion"; "undoRegion": "undoRegion"; "redoRegion": "redoRegion"; "segmentRegions": "segmentRegions"; "segmentCellpose": "segmentCellpose"; "runTool": "runTool"; "toggleDialogTool": "toggleDialogTool"; "toolModelChange": "toolModelChange"; "openToolParams": "openToolParams"; "samModelChange": "samModelChange"; "wandSensitivityChange": "wandSensitivityChange"; "brushSizeChange": "brushSizeChange"; "vertexEraserRadiusChange": "vertexEraserRadiusChange"; }, never, ["*"], false, never>;
+    static ɵcmp: i0.ɵɵComponentDeclaration<ToolbarComponent, "plotting-toolbar", never, { "imageInfo": { "alias": "imageInfo"; "required": false; }; "hasSpatialDataset": { "alias": "hasSpatialDataset"; "required": false; }; "plotTypeOptions": { "alias": "plotTypeOptions"; "required": false; }; "selectedPlotType": { "alias": "selectedPlotType"; "required": false; }; "basePlotType": { "alias": "basePlotType"; "required": false; }; "isoRange": { "alias": "isoRange"; "required": false; }; "maxIndex": { "alias": "maxIndex"; "required": false; }; "zIndex": { "alias": "zIndex"; "required": false; }; "isHeatmap": { "alias": "isHeatmap"; "required": false; }; "is3dRegions": { "alias": "is3dRegions"; "required": false; }; "activeDragMode": { "alias": "activeDragMode"; "required": false; }; "activeSurface3dMode": { "alias": "activeSurface3dMode"; "required": false; }; "axesVisible": { "alias": "axesVisible"; "required": false; }; "wireframeActive": { "alias": "wireframeActive"; "required": false; }; "resolutionScale": { "alias": "resolutionScale"; "required": false; }; "wandSensitivity": { "alias": "wandSensitivity"; "required": false; }; "brushSize": { "alias": "brushSize"; "required": false; }; "vertexEraserRadius": { "alias": "vertexEraserRadius"; "required": false; }; "canUndo": { "alias": "canUndo"; "required": false; }; "canRedo": { "alias": "canRedo"; "required": false; }; "stackOptions": { "alias": "stackOptions"; "required": false; }; "tools": { "alias": "tools"; "required": false; }; "imageSmoothingEnabled": { "alias": "imageSmoothingEnabled"; "required": false; }; "samModels": { "alias": "samModels"; "required": false; }; "samModelId": { "alias": "samModelId"; "required": false; }; "contributedTools": { "alias": "contributedTools"; "required": false; }; "dialogTools": { "alias": "dialogTools"; "required": false; }; "openDialogToolId": { "alias": "openDialogToolId"; "required": false; }; "toolModelIds": { "alias": "toolModelIds"; "required": false; }; }, { "selectPlotType": "selectPlotType"; "addProfileLine": "addProfileLine"; "toggleImageSmoothing": "toggleImageSmoothing"; "isoRangeChange": "isoRangeChange"; "openChannelHistogram": "openChannelHistogram"; "openSpatialControls": "openSpatialControls"; "openRegionEditor": "openRegionEditor"; "selectStackOption": "selectStackOption"; "zScrub": "zScrub"; "zSlide": "zSlide"; "zIndexInput": "zIndexInput"; "reloadAndPlot": "reloadAndPlot"; "downloadImage": "downloadImage"; "autoscaleImage": "autoscaleImage"; "toggleDragMode": "toggleDragMode"; "zoomIn": "zoomIn"; "zoomOut": "zoomOut"; "toggleSurface3dMode": "toggleSurface3dMode"; "resetSurfaceCamera": "resetSurfaceCamera"; "toggleAxes": "toggleAxes"; "toggleWireframe": "toggleWireframe"; "selectResolution": "selectResolution"; "deleteRegion": "deleteRegion"; "undoRegion": "undoRegion"; "redoRegion": "redoRegion"; "segmentRegions": "segmentRegions"; "segmentCellpose": "segmentCellpose"; "runTool": "runTool"; "toggleDialogTool": "toggleDialogTool"; "toolModelChange": "toolModelChange"; "openToolParams": "openToolParams"; "samModelChange": "samModelChange"; "wandSensitivityChange": "wandSensitivityChange"; "brushSizeChange": "brushSizeChange"; "vertexEraserRadiusChange": "vertexEraserRadiusChange"; }, never, ["*"], false, never>;
 }

package/lib/visualizer.component.d.ts

@@ -101,6 +101,10 @@ export declare class VisualizerComponent implements OnInit, OnChanges, AfterView
      * the newer render's overlay, or applying its ROIs.
      */
     private renderToken;
+    /** Set once the template, and with it the plot div, exists (see ngAfterViewInit). */
+    private viewReady;
+    /** An image-less dataset whose draw waits for the view: see plotSpatialWithoutImage. */
+    private pendingSpatialDraw;
     zIndex: number;
     maxIndex: number;
     contextMenu: ContextMenu;
@@ -309,7 +313,10 @@ export declare class VisualizerComponent implements OnInit, OnChanges, AfterView
     isoRange: number[];
     /** Whether a spatial-omics dataset is currently published on
      *  `SPATIAL_DATA_PORT` — gates the spatial plot types in the selector. */
-    private hasSpatialDataset;
+    /** Bound by the toolbar, which offers the plot modes for a dataset with no image too. */
+    hasSpatialDataset: boolean;
+    /** The spatial dataset on offer, for drawing one that brings no image (see reloadAndPlot). */
+    private spatialDataset;
     /** Whether that dataset's observations carry a z, gating the 3D spatial mode. */
     private hasSpatial3dDataset;
     /** Whether it carries a registered volume. Change detection only: a volume
@@ -401,6 +408,8 @@ export declare class VisualizerComponent implements OnInit, OnChanges, AfterView
     private reconcileSelectedPlotType;
     ngOnInit(): void;
     ngAfterViewInit(): void;
+    /** The plot div exists now: run an image-less draw that arrived before it did. */
+    private onViewReady;
     onProfilePanelDragStart(e: MouseEvent): void;
     /** Grab the toolbar handle: detach it into a floating window (if still docked)
      *  and start dragging. */
@@ -465,6 +474,12 @@ export declare class VisualizerComponent implements OnInit, OnChanges, AfterView
     /** Move the displayed slice by `delta`, clamped to the stack bounds. */
     stepSlice(delta: number): void;
     reloadAndPlot(): void;
+    /**
+     * Draw a spatial mode with no image behind it: the observations alone, framed on their own
+     * extent, as the seqFISH example shows them. The image info is a placeholder naming the
+     * dataset, so regions drawn here are kept per dataset like any image's.
+     */
+    private plotSpatialWithoutImage;
     cancelLoading(): void;
     downloadImage(): void;
     autoscaleImage(): void;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jax-data-science/sci-image-visualizer",
-  "version": "0.8.0",
+  "version": "0.8.2",
   "engines": {
     "node": ">=20.9.0"
   },