@jax-data-science/sci-image-visualizer 0.3.2 → 0.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (93) hide show
  1. package/README.md +215 -11
  2. package/esm2022/index.mjs +20 -1
  3. package/esm2022/lib/contracts/display-types.mjs +20 -2
  4. package/esm2022/lib/contracts/image.contract.mjs +1 -1
  5. package/esm2022/lib/contracts/plot-type.mjs +36 -1
  6. package/esm2022/lib/contracts/ports/spatial-data.port.mjs +3 -0
  7. package/esm2022/lib/contracts/spatial-dataset.contract.mjs +45 -0
  8. package/esm2022/lib/contracts/visualizer.contract.mjs +1 -1
  9. package/esm2022/lib/implementations/napari-js/napari-axes-labels.mjs +10 -19
  10. package/esm2022/lib/implementations/napari-js/napari-region-overlay.mjs +71 -7
  11. package/esm2022/lib/implementations/napari-js/napari-scale-bar.mjs +1 -1
  12. package/esm2022/lib/implementations/napari-js/napari-spatial-tooltip.mjs +96 -0
  13. package/esm2022/lib/implementations/napari-js/napari-visualizer.service.mjs +1934 -55
  14. package/esm2022/lib/implementations/napari-js/napari-zoom.mjs +18 -0
  15. package/esm2022/lib/implementations/osd/openseadragon-visualizer.service.mjs +5 -3
  16. package/esm2022/lib/implementations/osd/osd-region-overlay.mjs +3 -4
  17. package/esm2022/lib/implementations/osd/osd-zoom.mjs +20 -0
  18. package/esm2022/lib/implementations/plotly/omics-trace-builders.mjs +555 -0
  19. package/esm2022/lib/implementations/plotly/plotly.service.mjs +13 -7
  20. package/esm2022/lib/implementations/spatial-data-http/spatial-data-http.service.mjs +304 -0
  21. package/esm2022/lib/implementations/spatial-data-http/spatial-wire.mjs +179 -0
  22. package/esm2022/lib/routing-visualizer.service.mjs +223 -12
  23. package/esm2022/lib/spatial/embedding-compute.mjs +142 -0
  24. package/esm2022/lib/spatial/gene-search.mjs +77 -0
  25. package/esm2022/lib/spatial/spatial-density.mjs +224 -0
  26. package/esm2022/lib/spatial/spatial-encoding.mjs +232 -0
  27. package/esm2022/lib/spatial/spatial-expression.mjs +257 -0
  28. package/esm2022/lib/spatial/spatial-framing.mjs +60 -0
  29. package/esm2022/lib/spatial/spatial-heatmap.mjs +185 -0
  30. package/esm2022/lib/spatial/spatial-hover.mjs +79 -0
  31. package/esm2022/lib/spatial/spatial-sections.mjs +96 -0
  32. package/esm2022/lib/spatial/spatial-selection.mjs +264 -0
  33. package/esm2022/lib/spatial/spatial-volume-image.mjs +163 -0
  34. package/esm2022/lib/spatial/tsne-worker.mjs +10 -0
  35. package/esm2022/lib/spatial/world-grid.mjs +77 -0
  36. package/esm2022/lib/spatial-controls/spatial-charts/spatial-charts.component.mjs +1278 -0
  37. package/esm2022/lib/spatial-controls/spatial-controls.component.mjs +621 -0
  38. package/esm2022/lib/store/spatial-selection.service.mjs +47 -0
  39. package/esm2022/lib/store/visualizer-store.service.mjs +23 -1
  40. package/esm2022/lib/toolbar/segmentation/cellpose-segmenter.service.mjs +2 -2
  41. package/esm2022/lib/toolbar/segmentation/sam-model-registry.mjs +9 -9
  42. package/esm2022/lib/toolbar/toolbar.component.mjs +30 -7
  43. package/esm2022/lib/visualization.module.mjs +23 -5
  44. package/esm2022/lib/visualizer.component.mjs +283 -22
  45. package/fesm2022/{jax-data-science-sci-image-visualizer-onnx-sam-session-ci1q0xnJ.mjs → jax-data-science-sci-image-visualizer-onnx-sam-session-BwP-A11m.mjs} +6 -4
  46. package/fesm2022/{jax-data-science-sci-image-visualizer-onnx-sam-session-ci1q0xnJ.mjs.map → jax-data-science-sci-image-visualizer-onnx-sam-session-BwP-A11m.mjs.map} +1 -1
  47. package/fesm2022/jax-data-science-sci-image-visualizer-tsne-worker-B_nXDGf0.mjs +12 -0
  48. package/fesm2022/jax-data-science-sci-image-visualizer-tsne-worker-B_nXDGf0.mjs.map +1 -0
  49. package/fesm2022/jax-data-science-sci-image-visualizer.mjs +15282 -7829
  50. package/fesm2022/jax-data-science-sci-image-visualizer.mjs.map +1 -1
  51. package/fesm2022/tsne.worker.js +19091 -0
  52. package/index.d.ts +15 -0
  53. package/lib/contracts/display-types.d.ts +131 -0
  54. package/lib/contracts/image.contract.d.ts +7 -0
  55. package/lib/contracts/plot-type.d.ts +42 -2
  56. package/lib/contracts/ports/spatial-data.port.d.ts +90 -0
  57. package/lib/contracts/spatial-dataset.contract.d.ts +281 -0
  58. package/lib/contracts/visualizer.contract.d.ts +99 -1
  59. package/lib/implementations/napari-js/napari-axes-labels.d.ts +9 -7
  60. package/lib/implementations/napari-js/napari-region-overlay.d.ts +38 -4
  61. package/lib/implementations/napari-js/napari-scale-bar.d.ts +7 -3
  62. package/lib/implementations/napari-js/napari-spatial-tooltip.d.ts +32 -0
  63. package/lib/implementations/napari-js/napari-visualizer.service.d.ts +497 -16
  64. package/lib/implementations/napari-js/napari-zoom.d.ts +15 -0
  65. package/lib/implementations/osd/osd-zoom.d.ts +19 -0
  66. package/lib/implementations/plotly/omics-trace-builders.d.ts +193 -0
  67. package/lib/implementations/plotly/plotly.service.d.ts +9 -0
  68. package/lib/implementations/spatial-data-http/spatial-data-http.service.d.ts +123 -0
  69. package/lib/implementations/spatial-data-http/spatial-wire.d.ts +115 -0
  70. package/lib/routing-visualizer.service.d.ts +45 -6
  71. package/lib/spatial/embedding-compute.d.ts +73 -0
  72. package/lib/spatial/gene-search.d.ts +48 -0
  73. package/lib/spatial/spatial-density.d.ts +73 -0
  74. package/lib/spatial/spatial-encoding.d.ts +155 -0
  75. package/lib/spatial/spatial-expression.d.ts +144 -0
  76. package/lib/spatial/spatial-framing.d.ts +37 -0
  77. package/lib/spatial/spatial-heatmap.d.ts +111 -0
  78. package/lib/spatial/spatial-hover.d.ts +49 -0
  79. package/lib/spatial/spatial-sections.d.ts +59 -0
  80. package/lib/spatial/spatial-selection.d.ts +113 -0
  81. package/lib/spatial/spatial-volume-image.d.ts +67 -0
  82. package/lib/spatial/tsne-worker.d.ts +7 -0
  83. package/lib/spatial/world-grid.d.ts +58 -0
  84. package/lib/spatial-controls/spatial-charts/spatial-charts.component.d.ts +439 -0
  85. package/lib/spatial-controls/spatial-controls.component.d.ts +257 -0
  86. package/lib/store/spatial-selection.service.d.ts +27 -0
  87. package/lib/store/visualizer-store.service.d.ts +13 -0
  88. package/lib/toolbar/toolbar.component.d.ts +19 -3
  89. package/lib/visualization.module.d.ts +28 -24
  90. package/lib/visualizer.component.d.ts +73 -2
  91. package/package.json +7 -3
  92. package/src/lib/assets/spatial-omics-3d.svg +31 -0
  93. package/src/lib/assets/spatial-omics.svg +27 -0

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