@jax-data-science/sci-image-visualizer 0.2.14 → 0.2.15

package/esm2022/lib/toolbar/segmentation/yolo-model-registry.mjs

@@ -28,6 +28,36 @@ const EYE_DEFAULTS = {
     overlapX: 0,
     overlapY: 0,
 };
+/**
+ * The retina is an elongated band spanning the whole field, so it crosses tile
+ * seams wherever they fall.
+ *
+ * With no overlap the tiles butt together at fixed boundaries: a structure
+ * sitting across a seam is cut in half, each tile sees only a slice, and the
+ * slice often fails to clear the confidence threshold — so the object vanishes
+ * exactly where the seam lands. Observed as multi-thousand-pixel holes in the
+ * middle of an otherwise continuous retina, which closed once overlap was
+ * raised.
+ *
+ * An object of size `s` is guaranteed to sit wholly inside some tile only when
+ * the overlap is at least `s / tileSize`; at 60% that covers anything up to
+ * ~307px of a 512px tile. The server's own table uses 0 here and has the same
+ * blind spot — this deliberately diverges from it.
+ */
+const RETINA_DEFAULTS = {
+    confidence: 0.6,
+    iouThreshold: 0.5,
+    // Cross-tile merging uses intersection-over-*smaller*, so at 0.3 a fragment is
+    // discarded once 30% of its own area is covered by a larger box — even when
+    // most of it lies outside. On a band detected as a chain of overlapping
+    // fragments that deletes the middle ones. Measured on one slide: 0.3 gave two
+    // boxes covering 75% of the band with a 3150px hole through it; 0.8 gave four
+    // boxes covering 100% with no hole, at the cost of two overlapping pairs.
+    // Matches the value jit-ui already sends the server for this checkpoint.
+    mergeThreshold: 0.8,
+    overlapX: 60,
+    overlapY: 60,
+};
 // Embryos are large, touch each other, and are imaged at native scale — hence
 // the heavy overlap and the far looser merge thresholds.
 const EMBRYO_DEFAULTS = {
@@ -48,7 +78,7 @@ export const YOLO_MODELS = [
         id: 'yolov8x-seg-retina',
         label: 'Retina',
         modelUrl: `${HF}/yolov8x-seg-retina-onnx/resolve/main/model.fp16w.onnx`,
-        defaults: { ...EYE_DEFAULTS },
+        defaults: { ...RETINA_DEFAULTS },
     },
     {
         id: 'yolov8x-seg-embryo-m2',
@@ -96,4 +126,4 @@ export function setDefaultYoloModel(id) {
 export function getDefaultYoloModelId() {
     return defaultModelId;
 }
-//# sourceMappingURL=data:application/json;base64,{"version":3,"file":"yolo-model-registry.js","sourceRoot":"","sources":["../../../../../src/lib/toolbar/segmentation/yolo-model-registry.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAsBH,MAAM,EAAE,GAAG,kCAAkC,CAAC;AAE9C,MAAM,YAAY,GAAG;IACnB,UAAU,EAAE,GAAG;IACf,YAAY,EAAE,GAAG;IACjB,cAAc,EAAE,GAAG;IACnB,QAAQ,EAAE,CAAC;IACX,QAAQ,EAAE,CAAC;CACZ,CAAC;AAEF,8EAA8E;AAC9E,yDAAyD;AACzD,MAAM,eAAe,GAAG;IACtB,UAAU,EAAE,GAAG;IACf,YAAY,EAAE,GAAG;IACjB,cAAc,EAAE,GAAG;IACnB,QAAQ,EAAE,EAAE;IACZ,QAAQ,EAAE,EAAE;CACb,CAAC;AAEF,MAAM,CAAC,MAAM,WAAW,GAAmB;IACzC;QACE,EAAE,EAAE,wBAAwB;QAC5B,KAAK,EAAE,aAAa;QACpB,QAAQ,EAAE,GAAG,EAAE,4DAA4D;QAC3E,QAAQ,EAAE,EAAE,GAAG,YAAY,EAAE;KAC9B;IACD;QACE,EAAE,EAAE,oBAAoB;QACxB,KAAK,EAAE,QAAQ;QACf,QAAQ,EAAE,GAAG,EAAE,wDAAwD;QACvE,QAAQ,EAAE,EAAE,GAAG,YAAY,EAAE;KAC9B;IACD;QACE,EAAE,EAAE,uBAAuB;QAC3B,KAAK,EAAE,aAAa;QACpB,QAAQ,EAAE,GAAG,EAAE,2DAA2D;QAC1E,QAAQ,EAAE,EAAE,GAAG,eAAe,EAAE;KACjC;IACD;QACE,EAAE,EAAE,uBAAuB;QAC3B,KAAK,EAAE,aAAa;QACpB,QAAQ,EAAE,GAAG,EAAE,2DAA2D;QAC1E,QAAQ,EAAE,EAAE,GAAG,eAAe,EAAE;KACjC;CACF,CAAC;AAEF,MAAM,CAAC,MAAM,qBAAqB,GAAG,wBAAwB,CAAC;AAE9D,IAAI,cAAc,GAAG,qBAAqB,CAAC;AAE3C,6EAA6E;AAC7E,MAAM,UAAU,YAAY,CAAC,EAAU;IACrC,OAAO,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,CAAC,CAAC;AAC9C,CAAC;AAED,2DAA2D;AAC3D,MAAM,UAAU,gBAAgB,CAAC,EAAU;IACzC,MAAM,CAAC,GAAG,YAAY,CAAC,EAAE,CAAC,CAAC;IAC3B,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,MAAM,GAAG,CAAC,CAAC;AAC7C,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,gBAAgB,CAAC,EAAU,EAAE,IAA6C;IACxF,MAAM,CAAC,GAAG,YAAY,CAAC,EAAE,CAAC,CAAC;IAC3B,IAAI,CAAC,CAAC;QAAE,OAAO;IACf,IAAI,IAAI,CAAC,QAAQ,KAAK,SAAS;QAAE,CAAC,CAAC,QAAQ,GAAG,IAAI,CAAC,QAAQ,CAAC;IAC5D,IAAI,IAAI,CAAC,OAAO,KAAK,SAAS;QAAE,CAAC,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC;AAC3D,CAAC;AAED,+DAA+D;AAC/D,MAAM,UAAU,mBAAmB,CAAC,EAAU;IAC5C,IAAI,YAAY,CAAC,EAAE,CAAC;QAAE,cAAc,GAAG,EAAE,CAAC;AAC5C,CAAC;AAED,MAAM,UAAU,qBAAqB;IACnC,OAAO,cAAc,CAAC;AACxB,CAAC","sourcesContent":["/**\n * Registry of YOLOv8-seg instance-segmentation models.\n *\n * Mirrors {@link SAM_MODELS}: public HF-hosted ONNX by default so the tool works\n * out of the box in any host, repointable at private hosting via\n * {@link setYoloModelUrls}.\n *\n * Each entry carries the per-model *defaults* the server-side worker uses for\n * that checkpoint. These are properties of how the model was trained (object\n * scale, expected crowding), not UI preferences — the embryo models want heavy\n * 60% tile overlap and loose merge thresholds because their objects are large\n * and touch, while the eye models were trained on sparse, downsampled fields.\n * Keeping them here means a host that just picks a model gets sane behaviour\n * without having to know any of that.\n *\n * Weights point at the `model.fp16w.onnx` variant deliberately. The `.fp16`\n * variant accumulates in half precision on WebGPU and, at the x-scale these\n * models use, produces materially wrong boxes; `fp16w` stores weights in fp16\n * and computes in fp32, so it is half the download at identical accuracy.\n *\n * Export tooling: the sibling `browser-onnx-tools` project.\n */\n\nexport interface YoloModelDef {\n  id: string;\n  label: string;\n  /** URL of the `.onnx` weights. Empty disables the model. */\n  modelUrl: string;\n  /**\n   * URL of the `model.json` sidecar. Omit to use `model.json` alongside the\n   * weights, which is how every published repo is laid out.\n   */\n  metaUrl?: string;\n  /** Per-model defaults, from the server worker's model table. */\n  defaults: {\n    confidence: number;\n    iouThreshold: number;\n    mergeThreshold: number;\n    overlapX: number;\n    overlapY: number;\n  };\n}\n\nconst HF = 'https://huggingface.co/Ballon999';\n\nconst EYE_DEFAULTS = {\n  confidence: 0.6,\n  iouThreshold: 0.5,\n  mergeThreshold: 0.3,\n  overlapX: 0,\n  overlapY: 0,\n};\n\n// Embryos are large, touch each other, and are imaged at native scale — hence\n// the heavy overlap and the far looser merge thresholds.\nconst EMBRYO_DEFAULTS = {\n  confidence: 0.6,\n  iouThreshold: 0.8,\n  mergeThreshold: 0.8,\n  overlapX: 60,\n  overlapY: 60,\n};\n\nexport const YOLO_MODELS: YoloModelDef[] = [\n  {\n    id: 'yolov8x-seg-opticnerve',\n    label: 'Optic nerve',\n    modelUrl: `${HF}/yolov8x-seg-opticnerve-onnx/resolve/main/model.fp16w.onnx`,\n    defaults: { ...EYE_DEFAULTS },\n  },\n  {\n    id: 'yolov8x-seg-retina',\n    label: 'Retina',\n    modelUrl: `${HF}/yolov8x-seg-retina-onnx/resolve/main/model.fp16w.onnx`,\n    defaults: { ...EYE_DEFAULTS },\n  },\n  {\n    id: 'yolov8x-seg-embryo-m2',\n    label: 'Embryo (M2)',\n    modelUrl: `${HF}/yolov8x-seg-embryo-m2-onnx/resolve/main/model.fp16w.onnx`,\n    defaults: { ...EMBRYO_DEFAULTS },\n  },\n  {\n    id: 'yolov8x-seg-embryo-m3',\n    label: 'Embryo (M3)',\n    modelUrl: `${HF}/yolov8x-seg-embryo-m3-onnx/resolve/main/model.fp16w.onnx`,\n    defaults: { ...EMBRYO_DEFAULTS },\n  },\n];\n\nexport const DEFAULT_YOLO_MODEL_ID = 'yolov8x-seg-opticnerve';\n\nlet defaultModelId = DEFAULT_YOLO_MODEL_ID;\n\n/** Look up a model definition by id. Returns undefined for an unknown id. */\nexport function getYoloModel(id: string): YoloModelDef | undefined {\n  return YOLO_MODELS.find((m) => m.id === id);\n}\n\n/** Whether a model has a usable weights URL configured. */\nexport function isYoloModelReady(id: string): boolean {\n  const m = getYoloModel(id);\n  return !!m && m.modelUrl.trim().length > 0;\n}\n\n/**\n * Repoint a model at different hosting (e.g. a GCS bucket or a same-origin\n * proxy). Call once at app init, before the first run. An empty `modelUrl`\n * disables the model.\n */\nexport function setYoloModelUrls(id: string, urls: { modelUrl?: string; metaUrl?: string }): void {\n  const m = getYoloModel(id);\n  if (!m) return;\n  if (urls.modelUrl !== undefined) m.modelUrl = urls.modelUrl;\n  if (urls.metaUrl !== undefined) m.metaUrl = urls.metaUrl;\n}\n\n/** Change which model runs when a caller does not name one. */\nexport function setDefaultYoloModel(id: string): void {\n  if (getYoloModel(id)) defaultModelId = id;\n}\n\nexport function getDefaultYoloModelId(): string {\n  return defaultModelId;\n}\n"]}
+//# sourceMappingURL=data:application/json;base64,{"version":3,"file":"yolo-model-registry.js","sourceRoot":"","sources":["../../../../../src/lib/toolbar/segmentation/yolo-model-registry.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAsBH,MAAM,EAAE,GAAG,kCAAkC,CAAC;AAE9C,MAAM,YAAY,GAAG;IACnB,UAAU,EAAE,GAAG;IACf,YAAY,EAAE,GAAG;IACjB,cAAc,EAAE,GAAG;IACnB,QAAQ,EAAE,CAAC;IACX,QAAQ,EAAE,CAAC;CACZ,CAAC;AAEF;;;;;;;;;;;;;;;GAeG;AACH,MAAM,eAAe,GAAG;IACtB,UAAU,EAAE,GAAG;IACf,YAAY,EAAE,GAAG;IACjB,+EAA+E;IAC/E,4EAA4E;IAC5E,wEAAwE;IACxE,8EAA8E;IAC9E,8EAA8E;IAC9E,0EAA0E;IAC1E,yEAAyE;IACzE,cAAc,EAAE,GAAG;IACnB,QAAQ,EAAE,EAAE;IACZ,QAAQ,EAAE,EAAE;CACb,CAAC;AAEF,8EAA8E;AAC9E,yDAAyD;AACzD,MAAM,eAAe,GAAG;IACtB,UAAU,EAAE,GAAG;IACf,YAAY,EAAE,GAAG;IACjB,cAAc,EAAE,GAAG;IACnB,QAAQ,EAAE,EAAE;IACZ,QAAQ,EAAE,EAAE;CACb,CAAC;AAEF,MAAM,CAAC,MAAM,WAAW,GAAmB;IACzC;QACE,EAAE,EAAE,wBAAwB;QAC5B,KAAK,EAAE,aAAa;QACpB,QAAQ,EAAE,GAAG,EAAE,4DAA4D;QAC3E,QAAQ,EAAE,EAAE,GAAG,YAAY,EAAE;KAC9B;IACD;QACE,EAAE,EAAE,oBAAoB;QACxB,KAAK,EAAE,QAAQ;QACf,QAAQ,EAAE,GAAG,EAAE,wDAAwD;QACvE,QAAQ,EAAE,EAAE,GAAG,eAAe,EAAE;KACjC;IACD;QACE,EAAE,EAAE,uBAAuB;QAC3B,KAAK,EAAE,aAAa;QACpB,QAAQ,EAAE,GAAG,EAAE,2DAA2D;QAC1E,QAAQ,EAAE,EAAE,GAAG,eAAe,EAAE;KACjC;IACD;QACE,EAAE,EAAE,uBAAuB;QAC3B,KAAK,EAAE,aAAa;QACpB,QAAQ,EAAE,GAAG,EAAE,2DAA2D;QAC1E,QAAQ,EAAE,EAAE,GAAG,eAAe,EAAE;KACjC;CACF,CAAC;AAEF,MAAM,CAAC,MAAM,qBAAqB,GAAG,wBAAwB,CAAC;AAE9D,IAAI,cAAc,GAAG,qBAAqB,CAAC;AAE3C,6EAA6E;AAC7E,MAAM,UAAU,YAAY,CAAC,EAAU;IACrC,OAAO,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,CAAC,CAAC;AAC9C,CAAC;AAED,2DAA2D;AAC3D,MAAM,UAAU,gBAAgB,CAAC,EAAU;IACzC,MAAM,CAAC,GAAG,YAAY,CAAC,EAAE,CAAC,CAAC;IAC3B,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,MAAM,GAAG,CAAC,CAAC;AAC7C,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,gBAAgB,CAAC,EAAU,EAAE,IAA6C;IACxF,MAAM,CAAC,GAAG,YAAY,CAAC,EAAE,CAAC,CAAC;IAC3B,IAAI,CAAC,CAAC;QAAE,OAAO;IACf,IAAI,IAAI,CAAC,QAAQ,KAAK,SAAS;QAAE,CAAC,CAAC,QAAQ,GAAG,IAAI,CAAC,QAAQ,CAAC;IAC5D,IAAI,IAAI,CAAC,OAAO,KAAK,SAAS;QAAE,CAAC,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC;AAC3D,CAAC;AAED,+DAA+D;AAC/D,MAAM,UAAU,mBAAmB,CAAC,EAAU;IAC5C,IAAI,YAAY,CAAC,EAAE,CAAC;QAAE,cAAc,GAAG,EAAE,CAAC;AAC5C,CAAC;AAED,MAAM,UAAU,qBAAqB;IACnC,OAAO,cAAc,CAAC;AACxB,CAAC","sourcesContent":["/**\n * Registry of YOLOv8-seg instance-segmentation models.\n *\n * Mirrors {@link SAM_MODELS}: public HF-hosted ONNX by default so the tool works\n * out of the box in any host, repointable at private hosting via\n * {@link setYoloModelUrls}.\n *\n * Each entry carries the per-model *defaults* the server-side worker uses for\n * that checkpoint. These are properties of how the model was trained (object\n * scale, expected crowding), not UI preferences — the embryo models want heavy\n * 60% tile overlap and loose merge thresholds because their objects are large\n * and touch, while the eye models were trained on sparse, downsampled fields.\n * Keeping them here means a host that just picks a model gets sane behaviour\n * without having to know any of that.\n *\n * Weights point at the `model.fp16w.onnx` variant deliberately. The `.fp16`\n * variant accumulates in half precision on WebGPU and, at the x-scale these\n * models use, produces materially wrong boxes; `fp16w` stores weights in fp16\n * and computes in fp32, so it is half the download at identical accuracy.\n *\n * Export tooling: the sibling `browser-onnx-tools` project.\n */\n\nexport interface YoloModelDef {\n  id: string;\n  label: string;\n  /** URL of the `.onnx` weights. Empty disables the model. */\n  modelUrl: string;\n  /**\n   * URL of the `model.json` sidecar. Omit to use `model.json` alongside the\n   * weights, which is how every published repo is laid out.\n   */\n  metaUrl?: string;\n  /** Per-model defaults, from the server worker's model table. */\n  defaults: {\n    confidence: number;\n    iouThreshold: number;\n    mergeThreshold: number;\n    overlapX: number;\n    overlapY: number;\n  };\n}\n\nconst HF = 'https://huggingface.co/Ballon999';\n\nconst EYE_DEFAULTS = {\n  confidence: 0.6,\n  iouThreshold: 0.5,\n  mergeThreshold: 0.3,\n  overlapX: 0,\n  overlapY: 0,\n};\n\n/**\n * The retina is an elongated band spanning the whole field, so it crosses tile\n * seams wherever they fall.\n *\n * With no overlap the tiles butt together at fixed boundaries: a structure\n * sitting across a seam is cut in half, each tile sees only a slice, and the\n * slice often fails to clear the confidence threshold — so the object vanishes\n * exactly where the seam lands. Observed as multi-thousand-pixel holes in the\n * middle of an otherwise continuous retina, which closed once overlap was\n * raised.\n *\n * An object of size `s` is guaranteed to sit wholly inside some tile only when\n * the overlap is at least `s / tileSize`; at 60% that covers anything up to\n * ~307px of a 512px tile. The server's own table uses 0 here and has the same\n * blind spot — this deliberately diverges from it.\n */\nconst RETINA_DEFAULTS = {\n  confidence: 0.6,\n  iouThreshold: 0.5,\n  // Cross-tile merging uses intersection-over-*smaller*, so at 0.3 a fragment is\n  // discarded once 30% of its own area is covered by a larger box — even when\n  // most of it lies outside. On a band detected as a chain of overlapping\n  // fragments that deletes the middle ones. Measured on one slide: 0.3 gave two\n  // boxes covering 75% of the band with a 3150px hole through it; 0.8 gave four\n  // boxes covering 100% with no hole, at the cost of two overlapping pairs.\n  // Matches the value jit-ui already sends the server for this checkpoint.\n  mergeThreshold: 0.8,\n  overlapX: 60,\n  overlapY: 60,\n};\n\n// Embryos are large, touch each other, and are imaged at native scale — hence\n// the heavy overlap and the far looser merge thresholds.\nconst EMBRYO_DEFAULTS = {\n  confidence: 0.6,\n  iouThreshold: 0.8,\n  mergeThreshold: 0.8,\n  overlapX: 60,\n  overlapY: 60,\n};\n\nexport const YOLO_MODELS: YoloModelDef[] = [\n  {\n    id: 'yolov8x-seg-opticnerve',\n    label: 'Optic nerve',\n    modelUrl: `${HF}/yolov8x-seg-opticnerve-onnx/resolve/main/model.fp16w.onnx`,\n    defaults: { ...EYE_DEFAULTS },\n  },\n  {\n    id: 'yolov8x-seg-retina',\n    label: 'Retina',\n    modelUrl: `${HF}/yolov8x-seg-retina-onnx/resolve/main/model.fp16w.onnx`,\n    defaults: { ...RETINA_DEFAULTS },\n  },\n  {\n    id: 'yolov8x-seg-embryo-m2',\n    label: 'Embryo (M2)',\n    modelUrl: `${HF}/yolov8x-seg-embryo-m2-onnx/resolve/main/model.fp16w.onnx`,\n    defaults: { ...EMBRYO_DEFAULTS },\n  },\n  {\n    id: 'yolov8x-seg-embryo-m3',\n    label: 'Embryo (M3)',\n    modelUrl: `${HF}/yolov8x-seg-embryo-m3-onnx/resolve/main/model.fp16w.onnx`,\n    defaults: { ...EMBRYO_DEFAULTS },\n  },\n];\n\nexport const DEFAULT_YOLO_MODEL_ID = 'yolov8x-seg-opticnerve';\n\nlet defaultModelId = DEFAULT_YOLO_MODEL_ID;\n\n/** Look up a model definition by id. Returns undefined for an unknown id. */\nexport function getYoloModel(id: string): YoloModelDef | undefined {\n  return YOLO_MODELS.find((m) => m.id === id);\n}\n\n/** Whether a model has a usable weights URL configured. */\nexport function isYoloModelReady(id: string): boolean {\n  const m = getYoloModel(id);\n  return !!m && m.modelUrl.trim().length > 0;\n}\n\n/**\n * Repoint a model at different hosting (e.g. a GCS bucket or a same-origin\n * proxy). Call once at app init, before the first run. An empty `modelUrl`\n * disables the model.\n */\nexport function setYoloModelUrls(id: string, urls: { modelUrl?: string; metaUrl?: string }): void {\n  const m = getYoloModel(id);\n  if (!m) return;\n  if (urls.modelUrl !== undefined) m.modelUrl = urls.modelUrl;\n  if (urls.metaUrl !== undefined) m.metaUrl = urls.metaUrl;\n}\n\n/** Change which model runs when a caller does not name one. */\nexport function setDefaultYoloModel(id: string): void {\n  if (getYoloModel(id)) defaultModelId = id;\n}\n\nexport function getDefaultYoloModelId(): string {\n  return defaultModelId;\n}\n"]}

package/fesm2022/jax-data-science-sci-image-visualizer.mjs

@@ -425,6 +425,36 @@ const EYE_DEFAULTS = {
     overlapX: 0,
     overlapY: 0,
 };
+/**
+ * The retina is an elongated band spanning the whole field, so it crosses tile
+ * seams wherever they fall.
+ *
+ * With no overlap the tiles butt together at fixed boundaries: a structure
+ * sitting across a seam is cut in half, each tile sees only a slice, and the
+ * slice often fails to clear the confidence threshold — so the object vanishes
+ * exactly where the seam lands. Observed as multi-thousand-pixel holes in the
+ * middle of an otherwise continuous retina, which closed once overlap was
+ * raised.
+ *
+ * An object of size `s` is guaranteed to sit wholly inside some tile only when
+ * the overlap is at least `s / tileSize`; at 60% that covers anything up to
+ * ~307px of a 512px tile. The server's own table uses 0 here and has the same
+ * blind spot — this deliberately diverges from it.
+ */
+const RETINA_DEFAULTS = {
+    confidence: 0.6,
+    iouThreshold: 0.5,
+    // Cross-tile merging uses intersection-over-*smaller*, so at 0.3 a fragment is
+    // discarded once 30% of its own area is covered by a larger box — even when
+    // most of it lies outside. On a band detected as a chain of overlapping
+    // fragments that deletes the middle ones. Measured on one slide: 0.3 gave two
+    // boxes covering 75% of the band with a 3150px hole through it; 0.8 gave four
+    // boxes covering 100% with no hole, at the cost of two overlapping pairs.
+    // Matches the value jit-ui already sends the server for this checkpoint.
+    mergeThreshold: 0.8,
+    overlapX: 60,
+    overlapY: 60,
+};
 // Embryos are large, touch each other, and are imaged at native scale — hence
 // the heavy overlap and the far looser merge thresholds.
 const EMBRYO_DEFAULTS = {
@@ -445,7 +475,7 @@ const YOLO_MODELS = [
         id: 'yolov8x-seg-retina',
         label: 'Retina',
         modelUrl: `${HF}/yolov8x-seg-retina-onnx/resolve/main/model.fp16w.onnx`,
-        defaults: { ...EYE_DEFAULTS },
+        defaults: { ...RETINA_DEFAULTS },
     },
     {
         id: 'yolov8x-seg-embryo-m2',