@jax-data-science/sci-image-visualizer 0.16.0 → 0.18.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (127) hide show
  1. package/esm2022/lib/contracts/display-types.mjs +4 -2
  2. package/esm2022/lib/contracts/image.contract.mjs +1 -1
  3. package/esm2022/lib/contracts/ports/spatial-data.port.mjs +1 -1
  4. package/esm2022/lib/contracts/region-editor-api.contract.mjs +1 -1
  5. package/esm2022/lib/contracts/region-store.contract.mjs +1 -1
  6. package/esm2022/lib/contracts/spatial-dataset.contract.mjs +1 -1
  7. package/esm2022/lib/contracts/visualizer.contract.mjs +1 -1
  8. package/esm2022/lib/geometry/cell-meshes.mjs +37 -0
  9. package/esm2022/lib/geometry/place.mjs +47 -0
  10. package/esm2022/lib/implementations/napari-js/napari-camera-depth.mjs +93 -0
  11. package/esm2022/lib/implementations/napari-js/napari-loading-state.mjs +1 -1
  12. package/esm2022/lib/implementations/napari-js/napari-region-overlay.mjs +2 -2
  13. package/esm2022/lib/implementations/napari-js/napari-scene.mjs +1 -1
  14. package/esm2022/lib/implementations/napari-js/napari-spatial-2d-scene.mjs +86 -18
  15. package/esm2022/lib/implementations/napari-js/napari-spatial-3d-cells.mjs +746 -0
  16. package/esm2022/lib/implementations/napari-js/napari-spatial-3d-scene.mjs +343 -18
  17. package/esm2022/lib/implementations/napari-js/napari-spatial-3d-transcripts.mjs +427 -0
  18. package/esm2022/lib/implementations/napari-js/napari-spatial-encoding.mjs +11 -4
  19. package/esm2022/lib/implementations/napari-js/napari-spatial-hover.mjs +95 -5
  20. package/esm2022/lib/implementations/napari-js/napari-spatial-scene.mjs +15 -1
  21. package/esm2022/lib/implementations/napari-js/napari-spatial-tiles.mjs +35 -8
  22. package/esm2022/lib/implementations/napari-js/napari-visualizer.service.mjs +40 -1
  23. package/esm2022/lib/implementations/napari-js/napari-volume-region-meshes.mjs +136 -28
  24. package/esm2022/lib/implementations/napari-js/napari-volume-scene.mjs +19 -3
  25. package/esm2022/lib/implementations/napari-js/spatial-tiles/cell-layers.mjs +188 -52
  26. package/esm2022/lib/implementations/napari-js/spatial-tiles/transcript-layers.mjs +35 -11
  27. package/esm2022/lib/implementations/osd/osd-region-overlay.mjs +2 -2
  28. package/esm2022/lib/implementations/spatial-data-http/spatial-data-http.service.mjs +10 -1
  29. package/esm2022/lib/region-editor/class-tree/class-tree.component.mjs +30 -3
  30. package/esm2022/lib/region-editor/classes-panel/classes-panel.component.mjs +15 -3
  31. package/esm2022/lib/region-editor/region-editor.component.mjs +24 -4
  32. package/esm2022/lib/region-source/region-source-ops.mjs +7 -1
  33. package/esm2022/lib/region-source/region-tiles.mjs +1 -1
  34. package/esm2022/lib/region-source/worker-region-source.mjs +24 -1
  35. package/esm2022/lib/routing-visualizer.service.mjs +404 -7
  36. package/esm2022/lib/spatial/observations-in-selection.mjs +83 -0
  37. package/esm2022/lib/spatial/plane-cells.mjs +119 -0
  38. package/esm2022/lib/spatial/spatial-controls.facade.mjs +304 -8
  39. package/esm2022/lib/spatial/spatial-encoding.mjs +52 -3
  40. package/esm2022/lib/spatial/spatial-hover.mjs +34 -1
  41. package/esm2022/lib/spatial/spatial-planes.mjs +49 -0
  42. package/esm2022/lib/spatial/spatial-selection.mjs +2 -2
  43. package/esm2022/lib/spatial/spatial-tile-merge.mjs +38 -1
  44. package/esm2022/lib/spatial/transcripts-in-selection.mjs +208 -0
  45. package/esm2022/lib/spatial-controls/spatial-cells-panel/spatial-cells-panel.component.mjs +42 -65
  46. package/esm2022/lib/spatial-controls/spatial-charts/spatial-charts.component.mjs +6 -2
  47. package/esm2022/lib/spatial-controls/spatial-color-by/spatial-color-by.component.mjs +187 -0
  48. package/esm2022/lib/spatial-controls/spatial-controls.component.mjs +51 -12
  49. package/esm2022/lib/spatial-controls/spatial-gene-style/spatial-gene-style.component.mjs +7 -3
  50. package/esm2022/lib/spatial-controls/spatial-gene-tree/spatial-gene-tree.component.mjs +21 -6
  51. package/esm2022/lib/spatial-controls/spatial-groups-panel/spatial-groups-panel.component.mjs +94 -13
  52. package/esm2022/lib/spatial-controls/spatial-key/spatial-key.component.mjs +3 -3
  53. package/esm2022/lib/spatial-controls/spatial-marker-genes-form/spatial-marker-genes-form.component.mjs +3 -3
  54. package/esm2022/lib/spatial-controls/spatial-observations-panel/spatial-observations-panel.component.mjs +79 -57
  55. package/esm2022/lib/spatial-controls/spatial-selection-observations/spatial-selection-observations.component.mjs +101 -0
  56. package/esm2022/lib/spatial-controls/spatial-selection-transcripts/spatial-selection-transcripts.component.mjs +94 -0
  57. package/esm2022/lib/spatial-controls/spatial-transcripts-panel/spatial-transcripts-panel.component.mjs +9 -3
  58. package/esm2022/lib/store/region-source-scope.mjs +10 -1
  59. package/esm2022/lib/store/region-store.service.mjs +33 -2
  60. package/esm2022/lib/toolbar/toolbar.component.mjs +10 -3
  61. package/esm2022/lib/visualizer/spatial-region-set.mjs +95 -0
  62. package/esm2022/lib/visualizer.component.mjs +40 -4
  63. package/fesm2022/{jax-data-science-sci-image-visualizer-jax-data-science-sci-image-visualizer-CYsPzX3J.mjs → jax-data-science-sci-image-visualizer-jax-data-science-sci-image-visualizer-CBiLcnE6.mjs} +4838 -656
  64. package/fesm2022/jax-data-science-sci-image-visualizer-jax-data-science-sci-image-visualizer-CBiLcnE6.mjs.map +1 -0
  65. package/fesm2022/{jax-data-science-sci-image-visualizer-onnx-sam-session-DaZVXq1s.mjs → jax-data-science-sci-image-visualizer-onnx-sam-session-BXHjv4PE.mjs} +2 -2
  66. package/fesm2022/{jax-data-science-sci-image-visualizer-onnx-sam-session-DaZVXq1s.mjs.map → jax-data-science-sci-image-visualizer-onnx-sam-session-BXHjv4PE.mjs.map} +1 -1
  67. package/fesm2022/jax-data-science-sci-image-visualizer.mjs +1 -1
  68. package/fesm2022/region-source.worker.js +84 -2
  69. package/lib/contracts/display-types.d.ts +99 -6
  70. package/lib/contracts/image.contract.d.ts +6 -0
  71. package/lib/contracts/ports/spatial-data.port.d.ts +7 -0
  72. package/lib/contracts/region-editor-api.contract.d.ts +9 -0
  73. package/lib/contracts/region-store.contract.d.ts +6 -0
  74. package/lib/contracts/spatial-dataset.contract.d.ts +7 -1
  75. package/lib/contracts/visualizer.contract.d.ts +43 -1
  76. package/lib/geometry/cell-meshes.d.ts +27 -0
  77. package/lib/geometry/place.d.ts +45 -0
  78. package/lib/implementations/napari-js/napari-camera-depth.d.ts +23 -0
  79. package/lib/implementations/napari-js/napari-loading-state.d.ts +1 -1
  80. package/lib/implementations/napari-js/napari-scene.d.ts +12 -0
  81. package/lib/implementations/napari-js/napari-spatial-2d-scene.d.ts +19 -3
  82. package/lib/implementations/napari-js/napari-spatial-3d-cells.d.ts +141 -0
  83. package/lib/implementations/napari-js/napari-spatial-3d-scene.d.ts +89 -0
  84. package/lib/implementations/napari-js/napari-spatial-3d-transcripts.d.ts +103 -0
  85. package/lib/implementations/napari-js/napari-spatial-encoding.d.ts +9 -2
  86. package/lib/implementations/napari-js/napari-spatial-hover.d.ts +22 -0
  87. package/lib/implementations/napari-js/napari-spatial-scene.d.ts +12 -0
  88. package/lib/implementations/napari-js/napari-spatial-tiles.d.ts +20 -6
  89. package/lib/implementations/napari-js/napari-visualizer.service.d.ts +27 -1
  90. package/lib/implementations/napari-js/napari-volume-region-meshes.d.ts +48 -16
  91. package/lib/implementations/napari-js/napari-volume-scene.d.ts +2 -0
  92. package/lib/implementations/napari-js/spatial-tiles/cell-layers.d.ts +54 -1
  93. package/lib/implementations/napari-js/spatial-tiles/transcript-layers.d.ts +11 -2
  94. package/lib/implementations/spatial-data-http/spatial-data-http.service.d.ts +7 -0
  95. package/lib/region-editor/class-tree/class-tree.component.d.ts +16 -1
  96. package/lib/region-editor/classes-panel/classes-panel.component.d.ts +10 -1
  97. package/lib/region-editor/region-editor.component.d.ts +4 -0
  98. package/lib/region-source/region-source-ops.d.ts +12 -0
  99. package/lib/region-source/region-tiles.d.ts +8 -0
  100. package/lib/region-source/worker-region-source.d.ts +18 -0
  101. package/lib/routing-visualizer.service.d.ts +140 -1
  102. package/lib/spatial/observations-in-selection.d.ts +43 -0
  103. package/lib/spatial/plane-cells.d.ts +37 -0
  104. package/lib/spatial/spatial-controls.facade.d.ts +59 -0
  105. package/lib/spatial/spatial-encoding.d.ts +24 -1
  106. package/lib/spatial/spatial-hover.d.ts +23 -0
  107. package/lib/spatial/spatial-planes.d.ts +22 -0
  108. package/lib/spatial/spatial-selection.d.ts +2 -1
  109. package/lib/spatial/spatial-tile-merge.d.ts +9 -0
  110. package/lib/spatial/transcripts-in-selection.d.ts +95 -0
  111. package/lib/spatial-controls/spatial-cells-panel/spatial-cells-panel.component.d.ts +19 -28
  112. package/lib/spatial-controls/spatial-color-by/spatial-color-by.component.d.ts +64 -0
  113. package/lib/spatial-controls/spatial-controls.component.d.ts +19 -2
  114. package/lib/spatial-controls/spatial-gene-style/spatial-gene-style.component.d.ts +3 -1
  115. package/lib/spatial-controls/spatial-gene-tree/spatial-gene-tree.component.d.ts +7 -0
  116. package/lib/spatial-controls/spatial-groups-panel/spatial-groups-panel.component.d.ts +28 -7
  117. package/lib/spatial-controls/spatial-observations-panel/spatial-observations-panel.component.d.ts +26 -23
  118. package/lib/spatial-controls/spatial-selection-observations/spatial-selection-observations.component.d.ts +48 -0
  119. package/lib/spatial-controls/spatial-selection-transcripts/spatial-selection-transcripts.component.d.ts +43 -0
  120. package/lib/spatial-controls/spatial-transcripts-panel/spatial-transcripts-panel.component.d.ts +3 -1
  121. package/lib/store/region-source-scope.d.ts +4 -0
  122. package/lib/store/region-store.service.d.ts +21 -0
  123. package/lib/toolbar/toolbar.component.d.ts +6 -1
  124. package/lib/visualizer/spatial-region-set.d.ts +55 -0
  125. package/lib/visualizer.component.d.ts +14 -0
  126. package/package.json +2 -2
  127. package/fesm2022/jax-data-science-sci-image-visualizer-jax-data-science-sci-image-visualizer-CYsPzX3J.mjs.map +0 -1

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