@jax-data-science/sci-image-visualizer 0.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (311) hide show
  1. package/LICENSE +21 -0
  2. package/README.md +404 -0
  3. package/esm2022/index.mjs +52 -0
  4. package/esm2022/jax-data-science-sci-image-visualizer.mjs +5 -0
  5. package/esm2022/lib/channel-histogram/channel-histogram.component.mjs +398 -0
  6. package/esm2022/lib/contracts/capabilities.contract.mjs +32 -0
  7. package/esm2022/lib/contracts/cell-segmenter.contract.mjs +12 -0
  8. package/esm2022/lib/contracts/channel-histogram-api.contract.mjs +14 -0
  9. package/esm2022/lib/contracts/colormap-lut.mjs +95 -0
  10. package/esm2022/lib/contracts/coordinate-transform.contract.mjs +2 -0
  11. package/esm2022/lib/contracts/display-types.mjs +8 -0
  12. package/esm2022/lib/contracts/image.contract.mjs +11 -0
  13. package/esm2022/lib/contracts/intensity.mjs +28 -0
  14. package/esm2022/lib/contracts/plot-type.mjs +112 -0
  15. package/esm2022/lib/contracts/ports/image-state.port.mjs +3 -0
  16. package/esm2022/lib/contracts/ports/preferences.port.mjs +3 -0
  17. package/esm2022/lib/contracts/ports/region-io.port.mjs +3 -0
  18. package/esm2022/lib/contracts/ports/tile-access.port.mjs +3 -0
  19. package/esm2022/lib/contracts/region-editor-api.contract.mjs +4 -0
  20. package/esm2022/lib/contracts/region-overlay.contract.mjs +2 -0
  21. package/esm2022/lib/contracts/region-store.contract.mjs +2 -0
  22. package/esm2022/lib/contracts/sam.contract.mjs +12 -0
  23. package/esm2022/lib/contracts/toolbar-config.mjs +8 -0
  24. package/esm2022/lib/contracts/visualizer.contract.mjs +10 -0
  25. package/esm2022/lib/contracts/viz-config.mjs +3 -0
  26. package/esm2022/lib/hex-color-picker/hex-color-picker.component.mjs +260 -0
  27. package/esm2022/lib/implementations/base-store-visualizer.mjs +76 -0
  28. package/esm2022/lib/implementations/napari-js/napari-axes-labels.mjs +106 -0
  29. package/esm2022/lib/implementations/napari-js/napari-region-overlay.mjs +847 -0
  30. package/esm2022/lib/implementations/napari-js/napari-scale-bar.mjs +92 -0
  31. package/esm2022/lib/implementations/napari-js/napari-visualizer.service.mjs +2283 -0
  32. package/esm2022/lib/implementations/napari-js/napari-volume-z-handle.mjs +126 -0
  33. package/esm2022/lib/implementations/osd/display-pipeline.mjs +143 -0
  34. package/esm2022/lib/implementations/osd/histogram-sampler.mjs +217 -0
  35. package/esm2022/lib/implementations/osd/openseadragon-visualizer.service.mjs +1780 -0
  36. package/esm2022/lib/implementations/osd/osd-coordinate-transform.mjs +25 -0
  37. package/esm2022/lib/implementations/osd/osd-coords.mjs +53 -0
  38. package/esm2022/lib/implementations/osd/osd-lib.mjs +20 -0
  39. package/esm2022/lib/implementations/osd/osd-region-overlay.mjs +1237 -0
  40. package/esm2022/lib/implementations/osd/osd-scale-bar.mjs +88 -0
  41. package/esm2022/lib/implementations/osd/slice-cache.mjs +488 -0
  42. package/esm2022/lib/implementations/osd/tile-client.mjs +29 -0
  43. package/esm2022/lib/implementations/plotly/plotly-coordinate-transform.mjs +37 -0
  44. package/esm2022/lib/implementations/plotly/plotly-region-overlay.mjs +31 -0
  45. package/esm2022/lib/implementations/plotly/plotly-trace-builders.mjs +183 -0
  46. package/esm2022/lib/implementations/plotly/plotly.service.mjs +2137 -0
  47. package/esm2022/lib/implementations/simple-slice-access.service.mjs +99 -0
  48. package/esm2022/lib/models/bezier.mjs +120 -0
  49. package/esm2022/lib/models/class-preset.mjs +46 -0
  50. package/esm2022/lib/models/geometry.mjs +198 -0
  51. package/esm2022/lib/models/region.mjs +166 -0
  52. package/esm2022/lib/models/shape.mjs +53 -0
  53. package/esm2022/lib/plot.utilities.mjs +693 -0
  54. package/esm2022/lib/processing/image-converter.service.mjs +90 -0
  55. package/esm2022/lib/processing/image-crop.mjs +62 -0
  56. package/esm2022/lib/processing/processing-image.mjs +50 -0
  57. package/esm2022/lib/provide-visualization.mjs +63 -0
  58. package/esm2022/lib/region-editor/mask-raster.mjs +95 -0
  59. package/esm2022/lib/region-editor/mask-worker.mjs +10 -0
  60. package/esm2022/lib/region-editor/region-editor.component.mjs +1190 -0
  61. package/esm2022/lib/region-ops.service.mjs +301 -0
  62. package/esm2022/lib/render-orchestrator.mjs +87 -0
  63. package/esm2022/lib/routing-visualizer.service.mjs +533 -0
  64. package/esm2022/lib/store/class-color.util.mjs +52 -0
  65. package/esm2022/lib/store/region-store.service.mjs +1029 -0
  66. package/esm2022/lib/store/visualizer-store.service.mjs +352 -0
  67. package/esm2022/lib/toolbar/brush/brush-tool.service.mjs +546 -0
  68. package/esm2022/lib/toolbar/crop/slide-crop.mjs +57 -0
  69. package/esm2022/lib/toolbar/segmentation/cell-segment-tool.service.mjs +115 -0
  70. package/esm2022/lib/toolbar/segmentation/cellpose-segmenter.service.mjs +84 -0
  71. package/esm2022/lib/toolbar/segmentation/onnx-sam-session.mjs +133 -0
  72. package/esm2022/lib/toolbar/segmentation/ort-runtime-config.mjs +31 -0
  73. package/esm2022/lib/toolbar/segmentation/sam-model-registry.mjs +108 -0
  74. package/esm2022/lib/toolbar/segmentation/sam-onnx-core.mjs +159 -0
  75. package/esm2022/lib/toolbar/segmentation/sam-point-tool.service.mjs +255 -0
  76. package/esm2022/lib/toolbar/segmentation/sam-prompt.mjs +94 -0
  77. package/esm2022/lib/toolbar/segmentation/sam-tool.service.mjs +188 -0
  78. package/esm2022/lib/toolbar/toolbar.component.mjs +311 -0
  79. package/esm2022/lib/toolbar/vertex-eraser/vertex-eraser-tool.service.mjs +234 -0
  80. package/esm2022/lib/toolbar/wand/wand-tool.service.mjs +499 -0
  81. package/esm2022/lib/toolbar/wand/wand.service.mjs +921 -0
  82. package/esm2022/lib/toolbar/zoom-to-box/zoom-to-box-tool.service.mjs +157 -0
  83. package/esm2022/lib/visualization.module.mjs +162 -0
  84. package/esm2022/lib/visualizer.component.mjs +1597 -0
  85. package/fesm2022/jax-data-science-sci-image-visualizer-mask-worker-uhepXUhM.mjs +12 -0
  86. package/fesm2022/jax-data-science-sci-image-visualizer-mask-worker-uhepXUhM.mjs.map +1 -0
  87. package/fesm2022/jax-data-science-sci-image-visualizer-onnx-sam-session-ci1q0xnJ.mjs +327 -0
  88. package/fesm2022/jax-data-science-sci-image-visualizer-onnx-sam-session-ci1q0xnJ.mjs.map +1 -0
  89. package/fesm2022/jax-data-science-sci-image-visualizer.mjs +21314 -0
  90. package/fesm2022/jax-data-science-sci-image-visualizer.mjs.map +1 -0
  91. package/fesm2022/mask.worker.js +989 -0
  92. package/fesm2022/onnx-sam.worker.js +202 -0
  93. package/index.d.ts +39 -0
  94. package/lib/channel-histogram/channel-histogram.component.d.ts +112 -0
  95. package/lib/contracts/capabilities.contract.d.ts +30 -0
  96. package/lib/contracts/cell-segmenter.contract.d.ts +40 -0
  97. package/lib/contracts/channel-histogram-api.contract.d.ts +98 -0
  98. package/lib/contracts/colormap-lut.d.ts +21 -0
  99. package/lib/contracts/coordinate-transform.contract.d.ts +43 -0
  100. package/lib/contracts/display-types.d.ts +41 -0
  101. package/lib/contracts/image.contract.d.ts +72 -0
  102. package/lib/contracts/intensity.d.ts +18 -0
  103. package/lib/contracts/plot-type.d.ts +108 -0
  104. package/lib/contracts/ports/image-state.port.d.ts +29 -0
  105. package/lib/contracts/ports/preferences.port.d.ts +19 -0
  106. package/lib/contracts/ports/region-io.port.d.ts +29 -0
  107. package/lib/contracts/ports/tile-access.port.d.ts +27 -0
  108. package/lib/contracts/region-editor-api.contract.d.ts +83 -0
  109. package/lib/contracts/region-overlay.contract.d.ts +47 -0
  110. package/lib/contracts/region-store.contract.d.ts +74 -0
  111. package/lib/contracts/sam.contract.d.ts +98 -0
  112. package/lib/contracts/toolbar-config.d.ts +24 -0
  113. package/lib/contracts/visualizer.contract.d.ts +346 -0
  114. package/lib/contracts/viz-config.d.ts +25 -0
  115. package/lib/hex-color-picker/hex-color-picker.component.d.ts +47 -0
  116. package/lib/implementations/base-store-visualizer.d.ts +71 -0
  117. package/lib/implementations/napari-js/napari-axes-labels.d.ts +47 -0
  118. package/lib/implementations/napari-js/napari-region-overlay.d.ts +115 -0
  119. package/lib/implementations/napari-js/napari-scale-bar.d.ts +31 -0
  120. package/lib/implementations/napari-js/napari-visualizer.service.d.ts +455 -0
  121. package/lib/implementations/napari-js/napari-volume-z-handle.d.ts +46 -0
  122. package/lib/implementations/osd/display-pipeline.d.ts +47 -0
  123. package/lib/implementations/osd/histogram-sampler.d.ts +85 -0
  124. package/lib/implementations/osd/openseadragon-visualizer.service.d.ts +476 -0
  125. package/lib/implementations/osd/osd-coordinate-transform.d.ts +17 -0
  126. package/lib/implementations/osd/osd-coords.d.ts +16 -0
  127. package/lib/implementations/osd/osd-lib.d.ts +19 -0
  128. package/lib/implementations/osd/osd-region-overlay.d.ts +191 -0
  129. package/lib/implementations/osd/osd-scale-bar.d.ts +17 -0
  130. package/lib/implementations/osd/slice-cache.d.ts +161 -0
  131. package/lib/implementations/osd/tile-client.d.ts +32 -0
  132. package/lib/implementations/plotly/plotly-coordinate-transform.d.ts +19 -0
  133. package/lib/implementations/plotly/plotly-region-overlay.d.ts +23 -0
  134. package/lib/implementations/plotly/plotly-trace-builders.d.ts +60 -0
  135. package/lib/implementations/plotly/plotly.service.d.ts +594 -0
  136. package/lib/implementations/simple-slice-access.service.d.ts +64 -0
  137. package/lib/models/bezier.d.ts +59 -0
  138. package/lib/models/class-preset.d.ts +39 -0
  139. package/lib/models/geometry.d.ts +66 -0
  140. package/lib/models/region.d.ts +132 -0
  141. package/lib/models/shape.d.ts +44 -0
  142. package/lib/plot.utilities.d.ts +107 -0
  143. package/lib/processing/image-converter.service.d.ts +28 -0
  144. package/lib/processing/image-crop.d.ts +18 -0
  145. package/lib/processing/processing-image.d.ts +17 -0
  146. package/lib/provide-visualization.d.ts +34 -0
  147. package/lib/region-editor/mask-raster.d.ts +61 -0
  148. package/lib/region-editor/mask-worker.d.ts +7 -0
  149. package/lib/region-editor/region-editor.component.d.ts +305 -0
  150. package/lib/region-ops.service.d.ts +92 -0
  151. package/lib/render-orchestrator.d.ts +59 -0
  152. package/lib/routing-visualizer.service.d.ts +227 -0
  153. package/lib/store/class-color.util.d.ts +26 -0
  154. package/lib/store/region-store.service.d.ts +315 -0
  155. package/lib/store/visualizer-store.service.d.ts +123 -0
  156. package/lib/toolbar/brush/brush-tool.service.d.ts +143 -0
  157. package/lib/toolbar/crop/slide-crop.d.ts +30 -0
  158. package/lib/toolbar/segmentation/cell-segment-tool.service.d.ts +32 -0
  159. package/lib/toolbar/segmentation/cellpose-segmenter.service.d.ts +39 -0
  160. package/lib/toolbar/segmentation/onnx-sam-session.d.ts +25 -0
  161. package/lib/toolbar/segmentation/ort-runtime-config.d.ts +4 -0
  162. package/lib/toolbar/segmentation/sam-model-registry.d.ts +36 -0
  163. package/lib/toolbar/segmentation/sam-onnx-core.d.ts +48 -0
  164. package/lib/toolbar/segmentation/sam-point-tool.service.d.ts +59 -0
  165. package/lib/toolbar/segmentation/sam-prompt.d.ts +34 -0
  166. package/lib/toolbar/segmentation/sam-tool.service.d.ts +50 -0
  167. package/lib/toolbar/toolbar.component.d.ts +167 -0
  168. package/lib/toolbar/vertex-eraser/vertex-eraser-tool.service.d.ts +64 -0
  169. package/lib/toolbar/wand/wand-tool.service.d.ts +149 -0
  170. package/lib/toolbar/wand/wand.service.d.ts +133 -0
  171. package/lib/toolbar/zoom-to-box/zoom-to-box-tool.service.d.ts +49 -0
  172. package/lib/visualization.module.d.ts +45 -0
  173. package/lib/visualizer.component.d.ts +378 -0
  174. package/package.json +73 -0
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