@jax-data-science/api-clients 0.0.2-0 → 0.1.0-a.0

package/fesm2022/jax-data-science-api-clients.mjs

@@ -1,27 +1,24 @@
 import * as i0 from '@angular/core';
-import { Injectable, inject, InjectionToken, Inject, NgModule } from '@angular/core';
+import { inject, Injectable, InjectionToken, NgModule } from '@angular/core';
 import { throwError, map, catchError, Observable, BehaviorSubject, combineLatest, tap } from 'rxjs';
 import { fetchEventSource } from '@microsoft/fetch-event-source';
-import * as i1 from '@angular/common/http';
+import { HttpClient } from '@angular/common/http';
 import { CommonModule } from '@angular/common';
 
 class ApiBaseServiceFactory {
-    http;
-    constructor(http) {
-        this.http = http;
-    }
+    http = inject(HttpClient);
     create(baseUrl) {
         return new ApiBaseService(this.http, baseUrl);
     }
-    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: ApiBaseServiceFactory, deps: [{ token: i1.HttpClient }], target: i0.ɵɵFactoryTarget.Injectable });
-    static ɵprov = i0.ɵɵngDeclareInjectable({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: ApiBaseServiceFactory, providedIn: 'root' });
+    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: ApiBaseServiceFactory, deps: [], target: i0.ɵɵFactoryTarget.Injectable });
+    static ɵprov = i0.ɵɵngDeclareInjectable({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: ApiBaseServiceFactory, providedIn: 'root' });
 }
-i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: ApiBaseServiceFactory, decorators: [{
+i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: ApiBaseServiceFactory, decorators: [{
             type: Injectable,
             args: [{
                     providedIn: 'root'
                 }]
-        }], ctorParameters: () => [{ type: i1.HttpClient }] });
+        }] });
 class ApiBaseService {
     http;
     baseUrl;
@@ -338,10 +335,10 @@ class AsyncTaskService {
     getHealthCheck() {
         return this.apiBaseService.get('/monitors/servers/health');
     }
-    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: AsyncTaskService, deps: [], target: i0.ɵɵFactoryTarget.Injectable });
-    static ɵprov = i0.ɵɵngDeclareInjectable({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: AsyncTaskService, providedIn: 'root' });
+    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: AsyncTaskService, deps: [], target: i0.ɵɵFactoryTarget.Injectable });
+    static ɵprov = i0.ɵɵngDeclareInjectable({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: AsyncTaskService, providedIn: 'root' });
 }
-i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: AsyncTaskService, decorators: [{
+i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: AsyncTaskService, decorators: [{
             type: Injectable,
             args: [{
                     providedIn: 'root'
@@ -471,10 +468,10 @@ class ISADataService {
     getHealthCheck() {
         return this.apiBaseService.get('/monitors/servers/health');
     }
-    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: ISADataService, deps: [], target: i0.ɵɵFactoryTarget.Injectable });
-    static ɵprov = i0.ɵɵngDeclareInjectable({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: ISADataService, providedIn: 'root' });
+    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: ISADataService, deps: [], target: i0.ɵɵFactoryTarget.Injectable });
+    static ɵprov = i0.ɵɵngDeclareInjectable({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: ISADataService, providedIn: 'root' });
 }
-i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: ISADataService, decorators: [{
+i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: ISADataService, decorators: [{
             type: Injectable,
             args: [{
                     providedIn: 'root'
@@ -524,17 +521,17 @@ const MUS_CHRS = [
     'Y',
 ];
 
+const MVAR_SERVICE_CONFIG = new InjectionToken('MVAR_SERVICE_CONFIG');
+
 class MVarService {
-    http;
-    environment;
+    config = inject(MVAR_SERVICE_CONFIG);
+    http = inject(HttpClient);
     api;
     sequenceOntologyMapping = {};
     soTerms = new BehaviorSubject([]);
     soTerms$ = this.soTerms.asObservable();
-    constructor(http, environment) {
-        this.http = http;
-        this.environment = environment;
-        this.api = environment.unsecuredURLs.mvar;
+    constructor() {
+        this.api = this.config.apiUrl;
         // create a sequence ontology lookup
         this.getSequenceOntologyTerms().subscribe((terms) => {
             terms.forEach((t) => {
@@ -634,37 +631,34 @@ class MVarService {
         }
         return displayedRegions;
     }
-    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: MVarService, deps: [{ token: i1.HttpClient }, { token: 'environment' }], target: i0.ɵɵFactoryTarget.Injectable });
-    static ɵprov = i0.ɵɵngDeclareInjectable({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: MVarService, providedIn: 'root' });
+    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: MVarService, deps: [], target: i0.ɵɵFactoryTarget.Injectable });
+    static ɵprov = i0.ɵɵngDeclareInjectable({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: MVarService, providedIn: 'root' });
 }
-i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: MVarService, decorators: [{
+i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: MVarService, decorators: [{
             type: Injectable,
             args: [{
                     providedIn: 'root'
                 }]
-        }], ctorParameters: () => [{ type: i1.HttpClient }, { type: undefined, decorators: [{
-                    type: Inject,
-                    args: ['environment']
-                }] }] });
+        }], ctorParameters: () => [] });
 
 class MvarClientModule {
-    static forRoot(environment) {
+    static forRoot(apiUrl) {
         return {
             ngModule: MvarClientModule,
             providers: [
                 MVarService,
                 {
-                    provide: 'environment', // you can also use InjectionToken
-                    useValue: environment
+                    provide: MVAR_SERVICE_CONFIG,
+                    useValue: { apiUrl }
                 }
             ]
         };
     }
-    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: MvarClientModule, deps: [], target: i0.ɵɵFactoryTarget.NgModule });
-    static ɵmod = i0.ɵɵngDeclareNgModule({ minVersion: "14.0.0", version: "19.2.15", ngImport: i0, type: MvarClientModule, imports: [CommonModule] });
-    static ɵinj = i0.ɵɵngDeclareInjector({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: MvarClientModule, imports: [CommonModule] });
+    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: MvarClientModule, deps: [], target: i0.ɵɵFactoryTarget.NgModule });
+    static ɵmod = i0.ɵɵngDeclareNgModule({ minVersion: "14.0.0", version: "20.3.16", ngImport: i0, type: MvarClientModule, imports: [CommonModule] });
+    static ɵinj = i0.ɵɵngDeclareInjector({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: MvarClientModule, imports: [CommonModule] });
 }
-i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: MvarClientModule, decorators: [{
+i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: MvarClientModule, decorators: [{
             type: NgModule,
             args: [{
                     imports: [CommonModule],
@@ -691,15 +685,14 @@ function ontologyFromCurie(curie) {
 }
 
 class JaxOntologyService extends OntologyService {
-    httpClient;
+    httpClient = inject(HttpClient);
     config_location = 'https://raw.githubusercontent.com/TheJacksonLaboratory/ontology-service/refs/heads/main/config/ontologies-internal.json';
     config;
     /**
      * Get the configuration file from the source for the backend api service
      */
-    constructor(httpClient) {
+    constructor() {
         super();
-        this.httpClient = httpClient;
         this.httpClient.get(this.config_location).subscribe({
             next: (config) => this.config = config,
             error: () => {
@@ -794,25 +787,24 @@ class JaxOntologyService extends OntologyService {
         }
         return ontology_config.api.base;
     }
-    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: JaxOntologyService, deps: [{ token: i1.HttpClient }], target: i0.ɵɵFactoryTarget.Injectable });
-    static ɵprov = i0.ɵɵngDeclareInjectable({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: JaxOntologyService, providedIn: 'root' });
+    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: JaxOntologyService, deps: [], target: i0.ɵɵFactoryTarget.Injectable });
+    static ɵprov = i0.ɵɵngDeclareInjectable({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: JaxOntologyService, providedIn: 'root' });
 }
-i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: JaxOntologyService, decorators: [{
+i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: JaxOntologyService, decorators: [{
             type: Injectable,
             args: [{
                     providedIn: 'root'
                 }]
-        }], ctorParameters: () => [{ type: i1.HttpClient }] });
+        }], ctorParameters: () => [] });
 
 // ols-ontology.service.ts
 class OLSOntologyService extends OntologyService {
-    httpClient;
+    httpClient = inject(HttpClient);
     OLS_SEARCH_BASE = 'https://www.ebi.ac.uk/ols4/api/v2/entities';
     OLS_ENTITY_BASE = 'https://www.ebi.ac.uk/ols4/api/v2/ontologies';
     PURL_BASE = 'http://purl.obolibrary.org/obo';
-    constructor(httpClient) {
+    constructor() {
         super();
-        this.httpClient = httpClient;
     }
     term(id) {
         const ontology = ontologyFromCurie(id);
@@ -927,24 +919,24 @@ class OLSOntologyService extends OntologyService {
             name: olsTerm.label && olsTerm.label.length > 0 ? olsTerm.label[0] : 'No label'
         };
     }
-    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: OLSOntologyService, deps: [{ token: i1.HttpClient }], target: i0.ɵɵFactoryTarget.Injectable });
-    static ɵprov = i0.ɵɵngDeclareInjectable({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: OLSOntologyService, providedIn: 'root' });
+    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: OLSOntologyService, deps: [], target: i0.ɵɵFactoryTarget.Injectable });
+    static ɵprov = i0.ɵɵngDeclareInjectable({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: OLSOntologyService, providedIn: 'root' });
 }
-i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: OLSOntologyService, decorators: [{
+i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: OLSOntologyService, decorators: [{
             type: Injectable,
             args: [{
                     providedIn: 'root'
                 }]
-        }], ctorParameters: () => [{ type: i1.HttpClient }] });
+        }], ctorParameters: () => [] });
+
+const SNP_GRID_SERVICE_CONFIG = new InjectionToken('SNP_GRID_SERVICE_CONFIG');
 
 class SnpGridService {
-    http;
-    environment;
+    config = inject(SNP_GRID_SERVICE_CONFIG);
+    http = inject(HttpClient);
     api;
-    constructor(http, environment) {
-        this.http = http;
-        this.environment = environment;
-        this.api = environment.securedURLs.genomeMUSter;
+    constructor() {
+        this.api = this.config.apiUrl;
     }
     /**
      * Returns the result of a health check for the API
@@ -1103,37 +1095,34 @@ class SnpGridService {
         const url = `${this.api}/dataset_strain/?dataset_id=${datasetId}&limit=${limit}`;
         return this.http.get(url);
     }
-    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: SnpGridService, deps: [{ token: i1.HttpClient }, { token: 'environment' }], target: i0.ɵɵFactoryTarget.Injectable });
-    static ɵprov = i0.ɵɵngDeclareInjectable({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: SnpGridService, providedIn: 'root' });
+    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: SnpGridService, deps: [], target: i0.ɵɵFactoryTarget.Injectable });
+    static ɵprov = i0.ɵɵngDeclareInjectable({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: SnpGridService, providedIn: 'root' });
 }
-i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: SnpGridService, decorators: [{
+i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: SnpGridService, decorators: [{
             type: Injectable,
             args: [{
                     providedIn: 'root'
                 }]
-        }], ctorParameters: () => [{ type: i1.HttpClient }, { type: undefined, decorators: [{
-                    type: Inject,
-                    args: ['environment']
-                }] }] });
+        }], ctorParameters: () => [] });
 
 class SnpGridClientModule {
-    static forRoot(environment) {
+    static forRoot(apiUrl) {
         return {
             ngModule: SnpGridClientModule,
             providers: [
                 SnpGridService,
                 {
-                    provide: 'environment', // you can also use InjectionToken
-                    useValue: environment
+                    provide: SNP_GRID_SERVICE_CONFIG,
+                    useValue: { apiUrl }
                 }
             ]
         };
     }
-    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: SnpGridClientModule, deps: [], target: i0.ɵɵFactoryTarget.NgModule });
-    static ɵmod = i0.ɵɵngDeclareNgModule({ minVersion: "14.0.0", version: "19.2.15", ngImport: i0, type: SnpGridClientModule, imports: [CommonModule] });
-    static ɵinj = i0.ɵɵngDeclareInjector({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: SnpGridClientModule, imports: [CommonModule] });
+    static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: SnpGridClientModule, deps: [], target: i0.ɵɵFactoryTarget.NgModule });
+    static ɵmod = i0.ɵɵngDeclareNgModule({ minVersion: "14.0.0", version: "20.3.16", ngImport: i0, type: SnpGridClientModule, imports: [CommonModule] });
+    static ɵinj = i0.ɵɵngDeclareInjector({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: SnpGridClientModule, imports: [CommonModule] });
 }
-i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "19.2.15", ngImport: i0, type: SnpGridClientModule, decorators: [{
+i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "20.3.16", ngImport: i0, type: SnpGridClientModule, decorators: [{
             type: NgModule,
             args: [{
                     imports: [CommonModule],
@@ -1154,5 +1143,5 @@ var DatasetStatus;
  * Generated bundle index. Do not edit.
  */
 
-export { AsyncTaskService, DatasetStatus, ISADataService, ISA_DATA_SERVICE_CONFIG, JaxOntologyService, MUS_CHRS, MVarService, MvarClientModule, OLSOntologyService, OntologyService, SnpGridClientModule, SnpGridService, WorkflowExecutionStatus };
+export { AsyncTaskService, DatasetStatus, ISADataService, ISA_DATA_SERVICE_CONFIG, JaxOntologyService, MUS_CHRS, MVAR_SERVICE_CONFIG, MVarService, MvarClientModule, OLSOntologyService, OntologyService, SNP_GRID_SERVICE_CONFIG, SnpGridClientModule, SnpGridService, WorkflowExecutionStatus };
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