@jamesaphoenix/tx-core 0.5.8 → 0.5.9

package/dist/services/migration-service.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"migration-service.d.ts","sourceRoot":"","sources":["../../src/services/migration-service.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,QAAQ,CAAA;AAI/C,OAAO,EAAE,YAAY,EAAE,MAAM,UAAU,CAAA;AACvC,OAAO,EAAE,aAAa,EAAE,MAAM,cAAc,CAAA;AAE5C;;GAEG;AACH,MAAM,WAAW,SAAS;IACxB,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAA;IACxB,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAA;IAC5B,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAA;CACrB;AAED;;GAEG;AACH,MAAM,WAAW,gBAAgB;IAC/B,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAA;IACxB,QAAQ,CAAC,SAAS,EAAE,IAAI,CAAA;CACzB;AAED;;GAEG;AACH,MAAM,WAAW,eAAe;IAC9B,QAAQ,CAAC,cAAc,EAAE,MAAM,CAAA;IAC/B,QAAQ,CAAC,aAAa,EAAE,MAAM,CAAA;IAC9B,QAAQ,CAAC,YAAY,EAAE,MAAM,CAAA;IAC7B,QAAQ,CAAC,iBAAiB,EAAE,SAAS,gBAAgB,EAAE,CAAA;IACvD,QAAQ,CAAC,iBAAiB,EAAE,SAAS,SAAS,EAAE,CAAA;CACjD;AAmED;;;GAGG;AACH,eAAO,MAAM,UAAU,EAAE,SAAS,SAAS,EAAkC,CAAA;AAE7E;;GAEG;AACH,eAAO,MAAM,gBAAgB,QAAO,MAGnC,CAAA;;IASG;;;OAGG;wBACiB,MAAM,MAAM,CAAC,MAAM,CAAC,eAAe,EAAE,aAAa,CAAC;IAEvE;;;;OAIG;kBACW,MAAM,MAAM,CAAC,MAAM,CAAC,MAAM,EAAE,aAAa,CAAC;IAExD;;OAEG;gCACyB,MAAM,MAAM,CAAC,MAAM,CAAC,MAAM,EAAE,aAAa,CAAC;IAEtE;;OAEG;mCAC4B,MAAM,MAAM,CAAC,MAAM,CAAC,SAAS,gBAAgB,EAAE,EAAE,aAAa,CAAC;;AA5BlG;;;GAGG;AACH,qBAAa,gBAAiB,SAAQ,qBA0BnC;CAAG;AAEN,eAAO,MAAM,oBAAoB,oDAkFhC,CAAA"}
+{"version":3,"file":"migration-service.d.ts","sourceRoot":"","sources":["../../src/services/migration-service.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,QAAQ,CAAA;AAK/C,OAAO,EAAE,YAAY,EAAE,MAAM,UAAU,CAAA;AACvC,OAAO,EAAE,aAAa,EAAE,MAAM,cAAc,CAAA;AAE5C;;GAEG;AACH,MAAM,WAAW,SAAS;IACxB,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAA;IACxB,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAA;IAC5B,QAAQ,CAAC,GAAG,EAAE,MAAM,CAAA;CACrB;AAED;;GAEG;AACH,MAAM,WAAW,gBAAgB;IAC/B,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAA;IACxB,QAAQ,CAAC,SAAS,EAAE,IAAI,CAAA;CACzB;AAED;;GAEG;AACH,MAAM,WAAW,eAAe;IAC9B,QAAQ,CAAC,cAAc,EAAE,MAAM,CAAA;IAC/B,QAAQ,CAAC,aAAa,EAAE,MAAM,CAAA;IAC9B,QAAQ,CAAC,YAAY,EAAE,MAAM,CAAA;IAC7B,QAAQ,CAAC,iBAAiB,EAAE,SAAS,gBAAgB,EAAE,CAAA;IACvD,QAAQ,CAAC,iBAAiB,EAAE,SAAS,SAAS,EAAE,CAAA;CACjD;AAwED;;;GAGG;AACH,eAAO,MAAM,UAAU,EAAE,SAAS,SAAS,EAAkC,CAAA;AAE7E;;GAEG;AACH,eAAO,MAAM,gBAAgB,QAAO,MAGnC,CAAA;;IASG;;;OAGG;wBACiB,MAAM,MAAM,CAAC,MAAM,CAAC,eAAe,EAAE,aAAa,CAAC;IAEvE;;;;OAIG;kBACW,MAAM,MAAM,CAAC,MAAM,CAAC,MAAM,EAAE,aAAa,CAAC;IAExD;;OAEG;gCACyB,MAAM,MAAM,CAAC,MAAM,CAAC,MAAM,EAAE,aAAa,CAAC;IAEtE;;OAEG;mCAC4B,MAAM,MAAM,CAAC,MAAM,CAAC,SAAS,gBAAgB,EAAE,EAAE,aAAa,CAAC;;AA5BlG;;;GAGG;AACH,qBAAa,gBAAiB,SAAQ,qBA0BnC;CAAG;AAEN,eAAO,MAAM,oBAAoB,oDAkFhC,CAAA"}

package/dist/services/migration-service.js

@@ -1,4 +1,5 @@
 import { Context, Effect, Layer } from "effect";
+import { existsSync } from "node:fs";
 import { readdir, readFile } from "node:fs/promises";
 import { dirname, join, resolve } from "node:path";
 import { fileURLToPath } from "node:url";
@@ -6,16 +7,20 @@ import { SqliteClient } from "../db.js";
 import { DatabaseError } from "../errors.js";
 /**
  * Get the migrations directory path.
- * Looks for migrations/ relative to the package root.
+ * Checks two locations:
+ *   1. Package-local: ../../migrations relative to this file (works for npm installs
+ *      where migrations/ is copied into the package during build)
+ *   2. Monorepo root: ../../../../migrations (works in monorepo development)
  */
 const getMigrationsDir = () => {
-    // When running from source (src/services/migration-service.ts)
-    // or from dist (dist/services/migration-service.js),
-    // we need to go up to the package root and then into migrations/
     const currentDir = dirname(fileURLToPath(import.meta.url));
-    // Go up to packages/core, then up to monorepo root
-    const packageRoot = resolve(currentDir, "..", "..", "..", "..");
-    return join(packageRoot, "migrations");
+    // From src/services/ or dist/services/, up 2 levels = package root
+    const packageLocal = resolve(currentDir, "..", "..", "migrations");
+    if (existsSync(packageLocal))
+        return packageLocal;
+    // Fallback: monorepo root (up 4 levels from packages/core/src/services/)
+    const monorepoRoot = resolve(currentDir, "..", "..", "..", "..", "migrations");
+    return monorepoRoot;
 };
 /**
  * Parse a migration filename to extract version and description.

package/dist/services/migration-service.js.map

@@ -1 +1 @@
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package/migrations/001_initial.sql

@@ -0,0 +1,57 @@
+-- Version: 001
+-- Migration: initial
+
+-- Core tasks table
+CREATE TABLE IF NOT EXISTS tasks (
+    id TEXT PRIMARY KEY,
+    title TEXT NOT NULL,
+    description TEXT DEFAULT '',
+    status TEXT NOT NULL DEFAULT 'backlog'
+        CHECK (status IN (
+            'backlog', 'ready', 'planning', 'active',
+            'blocked', 'review', 'human_needs_to_review', 'done'
+        )),
+    parent_id TEXT REFERENCES tasks(id) ON DELETE SET NULL,
+    score INTEGER NOT NULL DEFAULT 0,
+    created_at TEXT NOT NULL,
+    updated_at TEXT NOT NULL,
+    completed_at TEXT,
+    metadata TEXT DEFAULT '{}'
+);
+
+-- Dependency relationships
+CREATE TABLE IF NOT EXISTS task_dependencies (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    blocker_id TEXT NOT NULL REFERENCES tasks(id) ON DELETE CASCADE,
+    blocked_id TEXT NOT NULL REFERENCES tasks(id) ON DELETE CASCADE,
+    created_at TEXT NOT NULL,
+    UNIQUE(blocker_id, blocked_id),
+    CHECK (blocker_id != blocked_id)
+);
+
+-- Compaction history
+CREATE TABLE IF NOT EXISTS compaction_log (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    compacted_at TEXT NOT NULL,
+    task_count INTEGER NOT NULL,
+    summary TEXT NOT NULL,
+    task_ids TEXT NOT NULL,
+    learnings_exported_to TEXT
+);
+
+-- Schema version tracking
+CREATE TABLE IF NOT EXISTS schema_version (
+    version INTEGER PRIMARY KEY,
+    applied_at TEXT NOT NULL
+);
+
+-- Indexes
+CREATE INDEX IF NOT EXISTS idx_tasks_status ON tasks(status);
+CREATE INDEX IF NOT EXISTS idx_tasks_parent ON tasks(parent_id);
+CREATE INDEX IF NOT EXISTS idx_tasks_score ON tasks(score DESC);
+CREATE INDEX IF NOT EXISTS idx_tasks_created ON tasks(created_at);
+CREATE INDEX IF NOT EXISTS idx_deps_blocker ON task_dependencies(blocker_id);
+CREATE INDEX IF NOT EXISTS idx_deps_blocked ON task_dependencies(blocked_id);
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (1, datetime('now'));

package/migrations/002_learnings.sql

@@ -0,0 +1,64 @@
+-- Version: 002
+-- Migration: Learnings table with FTS5 for BM25 search
+
+-- Learnings table (append-only event log)
+CREATE TABLE IF NOT EXISTS learnings (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    content TEXT NOT NULL,
+    source_type TEXT NOT NULL CHECK (source_type IN ('compaction', 'run', 'manual', 'claude_md')),
+    source_ref TEXT,
+    created_at TEXT NOT NULL,
+    keywords TEXT,
+    category TEXT,
+    usage_count INTEGER NOT NULL DEFAULT 0,
+    last_used_at TEXT,
+    outcome_score REAL,
+    embedding BLOB
+);
+
+-- FTS5 for BM25 keyword search
+CREATE VIRTUAL TABLE IF NOT EXISTS learnings_fts USING fts5(
+    content, keywords, category,
+    content='learnings', content_rowid='id',
+    tokenize='porter unicode61'
+);
+
+-- Triggers to sync FTS on insert
+CREATE TRIGGER IF NOT EXISTS learnings_ai AFTER INSERT ON learnings BEGIN
+    INSERT INTO learnings_fts(rowid, content, keywords, category)
+    VALUES (new.id, new.content, new.keywords, new.category);
+END;
+
+-- Triggers to sync FTS on delete
+CREATE TRIGGER IF NOT EXISTS learnings_ad AFTER DELETE ON learnings BEGIN
+    INSERT INTO learnings_fts(learnings_fts, rowid, content, keywords, category)
+    VALUES ('delete', old.id, old.content, old.keywords, old.category);
+END;
+
+-- Triggers to sync FTS on update
+CREATE TRIGGER IF NOT EXISTS learnings_au AFTER UPDATE ON learnings BEGIN
+    INSERT INTO learnings_fts(learnings_fts, rowid, content, keywords, category)
+    VALUES ('delete', old.id, old.content, old.keywords, old.category);
+    INSERT INTO learnings_fts(rowid, content, keywords, category)
+    VALUES (new.id, new.content, new.keywords, new.category);
+END;
+
+-- Config for retrieval weights
+CREATE TABLE IF NOT EXISTS learnings_config (
+    key TEXT PRIMARY KEY,
+    value TEXT NOT NULL
+);
+INSERT OR IGNORE INTO learnings_config (key, value) VALUES
+    ('bm25_weight', '0.4'),
+    ('vector_weight', '0.4'),
+    ('recency_weight', '0.2');
+
+-- Indexes for common queries
+CREATE INDEX IF NOT EXISTS idx_learnings_created ON learnings(created_at DESC);
+CREATE INDEX IF NOT EXISTS idx_learnings_source_type ON learnings(source_type);
+CREATE INDEX IF NOT EXISTS idx_learnings_usage ON learnings(usage_count DESC);
+CREATE INDEX IF NOT EXISTS idx_learnings_outcome ON learnings(outcome_score DESC);
+CREATE INDEX IF NOT EXISTS idx_learnings_category ON learnings(category);
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (2, datetime('now'));

package/migrations/003_file_learnings.sql

@@ -0,0 +1,19 @@
+-- Version: 003
+-- Migration: File learnings table for path-based knowledge
+
+-- File learnings table (path-based knowledge storage)
+CREATE TABLE IF NOT EXISTS file_learnings (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    file_pattern TEXT NOT NULL,
+    note TEXT NOT NULL,
+    task_id TEXT REFERENCES tasks(id) ON DELETE SET NULL,
+    created_at TEXT NOT NULL
+);
+
+-- Index for file pattern lookups
+CREATE INDEX IF NOT EXISTS idx_file_learnings_pattern ON file_learnings(file_pattern);
+CREATE INDEX IF NOT EXISTS idx_file_learnings_created ON file_learnings(created_at DESC);
+CREATE INDEX IF NOT EXISTS idx_file_learnings_task ON file_learnings(task_id);
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (3, datetime('now'));

package/migrations/004_attempts.sql

@@ -0,0 +1,18 @@
+-- Version: 004
+-- Migration: Attempts table for tracking task attempt outcomes
+
+-- Attempts table (track failed/succeeded approaches per task)
+CREATE TABLE IF NOT EXISTS attempts (
+    id INTEGER PRIMARY KEY,
+    task_id TEXT NOT NULL REFERENCES tasks(id) ON DELETE CASCADE,
+    approach TEXT NOT NULL,
+    outcome TEXT NOT NULL CHECK (outcome IN ('failed', 'succeeded')),
+    reason TEXT,
+    created_at TEXT NOT NULL
+);
+
+-- Index for task_id lookups
+CREATE INDEX IF NOT EXISTS idx_attempts_task_id ON attempts(task_id);
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (4, datetime('now'));

package/migrations/005_runs.sql

@@ -0,0 +1,34 @@
+-- Version: 005
+-- Migration: Runs table for tracking Claude agent sessions
+
+-- Runs table (track each Claude agent session)
+CREATE TABLE IF NOT EXISTS runs (
+    id TEXT PRIMARY KEY,                -- run-<sha8>
+    task_id TEXT REFERENCES tasks(id) ON DELETE SET NULL,
+    agent TEXT NOT NULL,                -- tx-implementer, tx-decomposer, etc.
+    started_at TEXT NOT NULL,
+    ended_at TEXT,
+    status TEXT NOT NULL DEFAULT 'running'
+        CHECK (status IN ('running', 'completed', 'failed', 'timeout', 'cancelled')),
+    exit_code INTEGER,
+    pid INTEGER,                        -- OS process ID
+    transcript_path TEXT,               -- Path to conversation .jsonl file
+    context_injected TEXT,              -- Path to context.md that was injected
+    summary TEXT,                       -- LLM-generated summary of what happened
+    error_message TEXT,                 -- If failed, why
+    metadata TEXT DEFAULT '{}'          -- JSON: git_sha, branch, iteration, etc.
+);
+
+-- Link learnings to runs (which run produced this learning?)
+-- Note: learnings table already exists, just adding the column
+ALTER TABLE learnings ADD COLUMN run_id TEXT REFERENCES runs(id) ON DELETE SET NULL;
+
+-- Indexes for common queries
+CREATE INDEX IF NOT EXISTS idx_runs_task ON runs(task_id);
+CREATE INDEX IF NOT EXISTS idx_runs_status ON runs(status);
+CREATE INDEX IF NOT EXISTS idx_runs_started ON runs(started_at DESC);
+CREATE INDEX IF NOT EXISTS idx_runs_agent ON runs(agent);
+CREATE INDEX IF NOT EXISTS idx_learnings_run ON learnings(run_id);
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (5, datetime('now'));

package/migrations/006_events.sql

@@ -0,0 +1,33 @@
+-- Version: 006
+-- Migration: Events table for append-only activity tracking
+
+-- Events table (append-only log of all activity for replay/analysis)
+CREATE TABLE IF NOT EXISTS events (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    timestamp TEXT NOT NULL,
+    event_type TEXT NOT NULL CHECK (event_type IN (
+        'run_started', 'run_completed', 'run_failed',
+        'task_created', 'task_updated', 'task_completed',
+        'tool_call', 'tool_result',
+        'user_message', 'assistant_message',
+        'error', 'learning_captured',
+        'commit', 'review'
+    )),
+    run_id TEXT REFERENCES runs(id) ON DELETE SET NULL,
+    task_id TEXT REFERENCES tasks(id) ON DELETE SET NULL,
+    agent TEXT,
+    tool_name TEXT,
+    content TEXT,
+    metadata TEXT DEFAULT '{}',
+    duration_ms INTEGER
+);
+
+-- Indexes for efficient querying
+CREATE INDEX IF NOT EXISTS idx_events_timestamp ON events(timestamp DESC);
+CREATE INDEX IF NOT EXISTS idx_events_type ON events(event_type);
+CREATE INDEX IF NOT EXISTS idx_events_run ON events(run_id);
+CREATE INDEX IF NOT EXISTS idx_events_task ON events(task_id);
+CREATE INDEX IF NOT EXISTS idx_events_agent ON events(agent);
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (6, datetime('now'));

package/migrations/007_sync_config.sql

@@ -0,0 +1,18 @@
+-- Version: 007
+-- Migration: Sync config table for JSONL sync daemon settings
+
+-- Sync config table (key-value store for sync settings)
+CREATE TABLE IF NOT EXISTS sync_config (
+    key TEXT PRIMARY KEY,
+    value TEXT NOT NULL,
+    updated_at TEXT NOT NULL
+);
+
+-- Default values
+INSERT OR IGNORE INTO sync_config (key, value, updated_at) VALUES
+    ('auto_sync', 'false', datetime('now')),
+    ('last_export', '', datetime('now')),
+    ('last_import', '', datetime('now'));
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (7, datetime('now'));

package/migrations/008_learning_anchors.sql

@@ -0,0 +1,28 @@
+-- Version: 008
+-- Migration: Learning anchors table for file-code associations
+
+-- Learning anchors table (file/code associations for learnings)
+CREATE TABLE IF NOT EXISTS learning_anchors (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    learning_id INTEGER NOT NULL REFERENCES learnings(id) ON DELETE CASCADE,
+    anchor_type TEXT NOT NULL CHECK (anchor_type IN ('glob', 'hash', 'symbol', 'line_range')),
+    anchor_value TEXT NOT NULL,
+    file_path TEXT NOT NULL,
+    symbol_fqname TEXT,
+    line_start INTEGER,
+    line_end INTEGER,
+    content_hash TEXT,
+    status TEXT NOT NULL DEFAULT 'valid' CHECK (status IN ('valid', 'invalid', 'drifted')),
+    verified_at TEXT,
+    created_at TEXT NOT NULL DEFAULT (datetime('now'))
+);
+
+-- Indexes for graph traversal and common queries
+CREATE INDEX IF NOT EXISTS idx_learning_anchors_learning_id ON learning_anchors(learning_id);
+CREATE INDEX IF NOT EXISTS idx_learning_anchors_file_path ON learning_anchors(file_path);
+CREATE INDEX IF NOT EXISTS idx_learning_anchors_status ON learning_anchors(status);
+CREATE INDEX IF NOT EXISTS idx_learning_anchors_anchor_type ON learning_anchors(anchor_type);
+CREATE INDEX IF NOT EXISTS idx_learning_anchors_symbol ON learning_anchors(symbol_fqname) WHERE symbol_fqname IS NOT NULL;
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (8, datetime('now'));

package/migrations/009_learning_edges.sql

@@ -0,0 +1,43 @@
+-- Version: 009
+-- Migration: Learning edges table for graph relationships
+
+-- Learning edges table (graph relationships between nodes)
+-- Supports edge types: ANCHORED_TO, DERIVED_FROM, IMPORTS, CO_CHANGES_WITH, SIMILAR_TO, LINKS_TO, USED_IN_RUN, INVALIDATED_BY
+-- Node types: learning, file, task, run
+CREATE TABLE IF NOT EXISTS learning_edges (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    edge_type TEXT NOT NULL CHECK (edge_type IN (
+        'ANCHORED_TO',
+        'DERIVED_FROM',
+        'IMPORTS',
+        'CO_CHANGES_WITH',
+        'SIMILAR_TO',
+        'LINKS_TO',
+        'USED_IN_RUN',
+        'INVALIDATED_BY'
+    )),
+    source_type TEXT NOT NULL CHECK (source_type IN ('learning', 'file', 'task', 'run')),
+    source_id TEXT NOT NULL,
+    target_type TEXT NOT NULL CHECK (target_type IN ('learning', 'file', 'task', 'run')),
+    target_id TEXT NOT NULL,
+    weight REAL NOT NULL DEFAULT 1.0 CHECK (weight >= 0.0 AND weight <= 1.0),
+    metadata TEXT NOT NULL DEFAULT '{}',
+    created_at TEXT NOT NULL DEFAULT (datetime('now')),
+    invalidated_at TEXT
+);
+
+-- Indexes for graph traversal
+-- Source-based lookups (outgoing edges)
+CREATE INDEX IF NOT EXISTS idx_learning_edges_source ON learning_edges(source_type, source_id);
+-- Target-based lookups (incoming edges)
+CREATE INDEX IF NOT EXISTS idx_learning_edges_target ON learning_edges(target_type, target_id);
+-- Edge type filtering
+CREATE INDEX IF NOT EXISTS idx_learning_edges_type ON learning_edges(edge_type);
+-- Active edges only (not invalidated) - partial index for efficient traversal
+CREATE INDEX IF NOT EXISTS idx_learning_edges_active ON learning_edges(source_type, source_id) WHERE invalidated_at IS NULL;
+-- Composite index for bidirectional traversal with edge type filtering
+CREATE INDEX IF NOT EXISTS idx_learning_edges_source_type ON learning_edges(source_type, source_id, edge_type) WHERE invalidated_at IS NULL;
+CREATE INDEX IF NOT EXISTS idx_learning_edges_target_type ON learning_edges(target_type, target_id, edge_type) WHERE invalidated_at IS NULL;
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (9, datetime('now'));

package/migrations/010_learning_candidates.sql

@@ -0,0 +1,30 @@
+-- Version: 010
+-- Migration: Learning candidates table for telemetry extraction pipeline
+
+-- Learning candidates awaiting promotion to learnings table
+-- See PRD-015: JSONL Telemetry Daemon and Knowledge Promotion Pipeline
+CREATE TABLE IF NOT EXISTS learning_candidates (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    content TEXT NOT NULL,
+    confidence TEXT NOT NULL CHECK (confidence IN ('high', 'medium', 'low')),
+    category TEXT,
+    source_file TEXT NOT NULL,
+    source_run_id TEXT,
+    source_task_id TEXT,
+    extracted_at TEXT NOT NULL DEFAULT (datetime('now')),
+    status TEXT NOT NULL DEFAULT 'pending' CHECK (status IN ('pending', 'promoted', 'rejected', 'merged')),
+    reviewed_at TEXT,
+    reviewed_by TEXT,  -- 'auto' or user identifier
+    promoted_learning_id INTEGER,
+    rejection_reason TEXT,
+    FOREIGN KEY (promoted_learning_id) REFERENCES learnings(id) ON DELETE SET NULL
+);
+
+-- Indexes for efficient queries
+CREATE INDEX IF NOT EXISTS idx_learning_candidates_status ON learning_candidates(status);
+CREATE INDEX IF NOT EXISTS idx_learning_candidates_confidence ON learning_candidates(confidence);
+CREATE INDEX IF NOT EXISTS idx_learning_candidates_source ON learning_candidates(source_file);
+CREATE INDEX IF NOT EXISTS idx_learning_candidates_extracted ON learning_candidates(extracted_at);
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (10, datetime('now'));

package/migrations/011_processed_hashes.sql

@@ -0,0 +1,35 @@
+-- Version: 011
+-- Migration: Processed hashes table for JSONL line deduplication
+
+-- Track processed JSONL line hashes for deduplication
+-- Each unique line (by content hash) is recorded once to avoid re-processing
+CREATE TABLE IF NOT EXISTS processed_hashes (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    content_hash TEXT NOT NULL UNIQUE,      -- SHA256 of the JSONL line content
+    source_file TEXT NOT NULL,              -- First file where this line was seen
+    source_line INTEGER NOT NULL,           -- Line number in source file (1-indexed)
+    processed_at TEXT NOT NULL DEFAULT (datetime('now'))
+);
+
+-- Index for fast hash lookups (most common operation)
+CREATE INDEX IF NOT EXISTS idx_processed_hashes_hash ON processed_hashes(content_hash);
+-- Index for querying by source file
+CREATE INDEX IF NOT EXISTS idx_processed_hashes_file ON processed_hashes(source_file);
+
+-- Track file processing progress for incremental processing
+-- Allows resuming from last position when a file changes
+CREATE TABLE IF NOT EXISTS file_progress (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    file_path TEXT NOT NULL UNIQUE,         -- Absolute path to the JSONL file
+    last_line_processed INTEGER DEFAULT 0,  -- Last line number processed (1-indexed)
+    last_byte_offset INTEGER DEFAULT 0,     -- Byte offset for streaming resume
+    file_size INTEGER,                      -- Size at last processing time
+    file_checksum TEXT,                     -- SHA256 of file content at last processing
+    last_processed_at TEXT NOT NULL DEFAULT (datetime('now'))
+);
+
+-- Index for file path lookups
+CREATE INDEX IF NOT EXISTS idx_file_progress_path ON file_progress(file_path);
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (11, datetime('now'));

package/migrations/012_invalidation.sql

@@ -0,0 +1,32 @@
+-- Version: 012
+-- Migration: Invalidation tracking and pinned anchors for PRD-017
+
+-- Add pinned column to learning_anchors
+ALTER TABLE learning_anchors ADD COLUMN pinned INTEGER NOT NULL DEFAULT 0;
+
+-- Invalidation audit log
+CREATE TABLE IF NOT EXISTS invalidation_log (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    anchor_id INTEGER NOT NULL,
+    old_status TEXT NOT NULL,
+    new_status TEXT NOT NULL,
+    reason TEXT NOT NULL,
+    detected_by TEXT NOT NULL CHECK (detected_by IN ('periodic', 'lazy', 'manual', 'agent', 'git_hook')),
+    old_content_hash TEXT,
+    new_content_hash TEXT,
+    similarity_score REAL,
+    invalidated_at TEXT NOT NULL DEFAULT (datetime('now')),
+    FOREIGN KEY (anchor_id) REFERENCES learning_anchors(id) ON DELETE CASCADE
+);
+
+-- Indexes for invalidation_log
+CREATE INDEX IF NOT EXISTS idx_invalidation_anchor ON invalidation_log(anchor_id);
+CREATE INDEX IF NOT EXISTS idx_invalidation_time ON invalidation_log(invalidated_at);
+CREATE INDEX IF NOT EXISTS idx_invalidation_status ON invalidation_log(new_status);
+CREATE INDEX IF NOT EXISTS idx_invalidation_detected_by ON invalidation_log(detected_by);
+
+-- Index for pinned anchors
+CREATE INDEX IF NOT EXISTS idx_learning_anchors_pinned ON learning_anchors(pinned) WHERE pinned = 1;
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (12, datetime('now'));

package/migrations/013_content_preview.sql

@@ -0,0 +1,13 @@
+-- Version: 013
+-- Migration: Add content_preview for self-healing comparison (PRD-017)
+
+-- Add content_preview column to store original content snippet for Jaccard similarity
+-- Used by self-healing to compare old vs new content when anchors drift
+ALTER TABLE learning_anchors ADD COLUMN content_preview TEXT;
+
+-- Index for faster lookups when content_preview is present
+CREATE INDEX IF NOT EXISTS idx_learning_anchors_has_preview
+    ON learning_anchors(content_hash) WHERE content_preview IS NOT NULL;
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (13, datetime('now'));

package/migrations/014_daemon_tracked_projects.sql

@@ -0,0 +1,20 @@
+-- Version: 014
+-- Migration: Daemon tracked projects for opt-in project monitoring (PRD-015)
+
+-- Tracked projects for the daemon to watch for JSONL transcript processing
+-- Users explicitly opt-in projects via `tx daemon track <path>`
+CREATE TABLE IF NOT EXISTS daemon_tracked_projects (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    project_path TEXT NOT NULL UNIQUE,
+    project_id TEXT,
+    source_type TEXT DEFAULT 'claude' CHECK (source_type IN ('claude', 'cursor', 'windsurf', 'other')),
+    added_at TEXT NOT NULL DEFAULT (datetime('now')),
+    enabled INTEGER NOT NULL DEFAULT 1 CHECK (enabled IN (0, 1))
+);
+
+-- Index for efficient enabled project queries
+CREATE INDEX IF NOT EXISTS idx_daemon_tracked_projects_enabled
+    ON daemon_tracked_projects(enabled) WHERE enabled = 1;
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (14, datetime('now'));

package/migrations/015_worker_orchestration.sql

@@ -0,0 +1,64 @@
+-- Version: 015
+-- Migration: Worker orchestration system (PRD-018)
+-- Implements k8s-style worker orchestration with heartbeats, leases, and reconciliation
+
+-- Workers table: registered worker processes
+CREATE TABLE IF NOT EXISTS workers (
+    id TEXT PRIMARY KEY,
+    name TEXT NOT NULL,
+    hostname TEXT NOT NULL,
+    pid INTEGER NOT NULL,
+    status TEXT NOT NULL DEFAULT 'starting'
+        CHECK (status IN ('starting', 'idle', 'busy', 'stopping', 'dead')),
+    registered_at TEXT NOT NULL DEFAULT (datetime('now')),
+    last_heartbeat_at TEXT NOT NULL DEFAULT (datetime('now')),
+    current_task_id TEXT REFERENCES tasks(id) ON DELETE SET NULL,
+    capabilities TEXT NOT NULL DEFAULT '[]',
+    metadata TEXT NOT NULL DEFAULT '{}'
+);
+
+-- Task claims table: lease-based task ownership
+CREATE TABLE IF NOT EXISTS task_claims (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    task_id TEXT NOT NULL REFERENCES tasks(id) ON DELETE CASCADE,
+    worker_id TEXT NOT NULL REFERENCES workers(id) ON DELETE CASCADE,
+    claimed_at TEXT NOT NULL DEFAULT (datetime('now')),
+    lease_expires_at TEXT NOT NULL,
+    renewed_count INTEGER NOT NULL DEFAULT 0,
+    status TEXT NOT NULL DEFAULT 'active'
+        CHECK (status IN ('active', 'released', 'expired', 'completed'))
+);
+
+-- Orchestrator state table: singleton state for the orchestrator
+-- Uses CHECK constraint to enforce singleton (only id=1 allowed)
+CREATE TABLE IF NOT EXISTS orchestrator_state (
+    id INTEGER PRIMARY KEY CHECK (id = 1),
+    status TEXT NOT NULL DEFAULT 'stopped'
+        CHECK (status IN ('stopped', 'starting', 'running', 'stopping')),
+    pid INTEGER,
+    started_at TEXT,
+    last_reconcile_at TEXT,
+    worker_pool_size INTEGER NOT NULL DEFAULT 1,
+    reconcile_interval_seconds INTEGER NOT NULL DEFAULT 60,
+    heartbeat_interval_seconds INTEGER NOT NULL DEFAULT 30,
+    lease_duration_minutes INTEGER NOT NULL DEFAULT 30,
+    metadata TEXT NOT NULL DEFAULT '{}'
+);
+
+-- Indexes for workers
+CREATE INDEX IF NOT EXISTS idx_workers_status ON workers(status);
+CREATE INDEX IF NOT EXISTS idx_workers_last_heartbeat ON workers(last_heartbeat_at);
+CREATE INDEX IF NOT EXISTS idx_workers_current_task ON workers(current_task_id) WHERE current_task_id IS NOT NULL;
+
+-- Indexes for task_claims
+CREATE INDEX IF NOT EXISTS idx_claims_task_id ON task_claims(task_id);
+CREATE INDEX IF NOT EXISTS idx_claims_worker_id ON task_claims(worker_id);
+CREATE INDEX IF NOT EXISTS idx_claims_status ON task_claims(status);
+CREATE INDEX IF NOT EXISTS idx_claims_expires ON task_claims(lease_expires_at) WHERE status = 'active';
+CREATE INDEX IF NOT EXISTS idx_claims_active_task ON task_claims(task_id, status) WHERE status = 'active';
+
+-- Insert initial orchestrator state (singleton row)
+INSERT OR IGNORE INTO orchestrator_state (id, status) VALUES (1, 'stopped');
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (15, datetime('now'));

package/migrations/016_tracing_io_paths.sql

@@ -0,0 +1,13 @@
+-- Version: 016
+-- Migration: Add stderr_path and stdout_path to runs table for PRD-019 execution tracing
+
+-- Add stderr capture path (optional, orchestrator decides whether to capture)
+ALTER TABLE runs ADD COLUMN stderr_path TEXT;
+
+-- Add stdout capture path (optional, orchestrator decides whether to capture)
+ALTER TABLE runs ADD COLUMN stdout_path TEXT;
+
+-- Note: transcript_path already exists from migration 005
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (16, datetime('now'));

package/migrations/017_span_metric_events.sql

@@ -0,0 +1,47 @@
+-- Version: 017
+-- Migration: Add 'span' and 'metric' event types for PRD-019 execution tracing
+
+-- SQLite doesn't support ALTER CHECK, so we need to recreate the table
+-- with the updated constraint that includes 'span' and 'metric' event types
+
+-- Step 1: Create new events table with updated CHECK constraint
+CREATE TABLE events_new (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    timestamp TEXT NOT NULL,
+    event_type TEXT NOT NULL CHECK (event_type IN (
+        'run_started', 'run_completed', 'run_failed',
+        'task_created', 'task_updated', 'task_completed',
+        'tool_call', 'tool_result',
+        'user_message', 'assistant_message',
+        'error', 'learning_captured',
+        'commit', 'review',
+        'span', 'metric'
+    )),
+    run_id TEXT REFERENCES runs(id) ON DELETE SET NULL,
+    task_id TEXT REFERENCES tasks(id) ON DELETE SET NULL,
+    agent TEXT,
+    tool_name TEXT,
+    content TEXT,
+    metadata TEXT DEFAULT '{}',
+    duration_ms INTEGER
+);
+
+-- Step 2: Copy existing data
+INSERT INTO events_new (id, timestamp, event_type, run_id, task_id, agent, tool_name, content, metadata, duration_ms)
+SELECT id, timestamp, event_type, run_id, task_id, agent, tool_name, content, metadata, duration_ms FROM events;
+
+-- Step 3: Drop old table
+DROP TABLE events;
+
+-- Step 4: Rename new table
+ALTER TABLE events_new RENAME TO events;
+
+-- Step 5: Recreate indexes (dropped with old table)
+CREATE INDEX IF NOT EXISTS idx_events_timestamp ON events(timestamp DESC);
+CREATE INDEX IF NOT EXISTS idx_events_type ON events(event_type);
+CREATE INDEX IF NOT EXISTS idx_events_run ON events(run_id);
+CREATE INDEX IF NOT EXISTS idx_events_task ON events(task_id);
+CREATE INDEX IF NOT EXISTS idx_events_agent ON events(agent);
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (17, datetime('now'));

package/migrations/018_compaction_learnings.sql

@@ -0,0 +1,15 @@
+-- Version: 018
+-- Migration: Add learnings column to compaction_log for data loss prevention
+--
+-- Fixes CRITICAL bug: learnings were only exported to file, not stored in DB.
+-- If file export failed (disk full, permissions, etc.), learnings were lost
+-- forever because the original tasks were already deleted.
+--
+-- Now learnings are stored in the database as the primary source of truth,
+-- ensuring they're never lost even if file export fails.
+
+-- Add learnings column to store actual learning content
+ALTER TABLE compaction_log ADD COLUMN learnings TEXT;
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (18, datetime('now'));

package/migrations/019_tasks_updated_at_index.sql

@@ -0,0 +1,11 @@
+-- Version: 019
+-- Migration: Add index on tasks.updated_at for sync dirty detection
+--
+-- The sync status dirty check scans all tasks to find any updated after
+-- the last export. Without an index on updated_at, this is O(n).
+-- With the index, a SQL query can find changed tasks in O(log n).
+
+CREATE INDEX IF NOT EXISTS idx_tasks_updated ON tasks(updated_at DESC);
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (19, datetime('now'));

package/migrations/020_task_id_check.sql

@@ -0,0 +1,32 @@
+-- Version: 020
+-- Migration: Add database-level task ID format validation
+--
+-- Problem: tasks.id has no format constraint. ID validation (tx-[a-z0-9]{6,})
+-- only exists in the app layer. JSONL import and direct SQL can insert malformed IDs.
+--
+-- Approach: Use BEFORE INSERT/UPDATE triggers instead of CHECK constraint because
+-- SQLite does not support ALTER TABLE ADD CONSTRAINT, and recreating the tasks table
+-- would cascade-delete all data in referencing tables (task_dependencies, attempts,
+-- runs, events, task_claims, workers, file_learnings) when foreign_keys is ON.
+-- Triggers provide identical database-level enforcement without table recreation.
+
+-- Validate task ID format on INSERT
+CREATE TRIGGER IF NOT EXISTS validate_task_id_insert
+BEFORE INSERT ON tasks
+FOR EACH ROW
+WHEN NEW.id NOT GLOB 'tx-[a-z0-9][a-z0-9][a-z0-9][a-z0-9][a-z0-9][a-z0-9]*'
+BEGIN
+  SELECT RAISE(ABORT, 'Task ID must match format: tx-[a-z0-9]{6,}');
+END;
+
+-- Validate task ID format on UPDATE (prevents changing id to malformed value)
+CREATE TRIGGER IF NOT EXISTS validate_task_id_update
+BEFORE UPDATE OF id ON tasks
+FOR EACH ROW
+WHEN NEW.id NOT GLOB 'tx-[a-z0-9][a-z0-9][a-z0-9][a-z0-9][a-z0-9][a-z0-9]*'
+BEGIN
+  SELECT RAISE(ABORT, 'Task ID must match format: tx-[a-z0-9]{6,}');
+END;
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (20, datetime('now'));

package/migrations/021_agent_outbox.sql

@@ -0,0 +1,34 @@
+-- Migration 021: Agent Outbox Messaging (PRD-024)
+--
+-- Channel-based agent-to-agent messaging primitive.
+-- Two-state lifecycle: pending -> acked
+-- Read-only inbox with cursor-based fan-out.
+
+CREATE TABLE IF NOT EXISTS outbox_messages (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    channel TEXT NOT NULL,
+    sender TEXT NOT NULL,
+    content TEXT NOT NULL,
+    status TEXT NOT NULL DEFAULT 'pending'
+        CHECK (status IN ('pending', 'acked')),
+    correlation_id TEXT,
+    task_id TEXT REFERENCES tasks(id) ON DELETE SET NULL,
+    metadata TEXT NOT NULL DEFAULT '{}',
+    created_at TEXT NOT NULL,
+    acked_at TEXT,
+    expires_at TEXT
+);
+
+-- Primary query path: inbox reads by channel + cursor (id > ?)
+CREATE INDEX IF NOT EXISTS idx_outbox_channel_id ON outbox_messages(channel, id);
+-- Filter by status (pending vs acked)
+CREATE INDEX IF NOT EXISTS idx_outbox_channel_status ON outbox_messages(channel, status);
+-- Request/reply pattern
+CREATE INDEX IF NOT EXISTS idx_outbox_correlation ON outbox_messages(correlation_id) WHERE correlation_id IS NOT NULL;
+-- Task-scoped messages
+CREATE INDEX IF NOT EXISTS idx_outbox_task_id ON outbox_messages(task_id) WHERE task_id IS NOT NULL;
+-- TTL cleanup
+CREATE INDEX IF NOT EXISTS idx_outbox_expires ON outbox_messages(expires_at) WHERE expires_at IS NOT NULL;
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (21, datetime('now'));

package/migrations/022_docs_as_primitives.sql

@@ -0,0 +1,66 @@
+-- Migration 022: Docs as Primitives (DD-023)
+-- Tables: docs, doc_links, task_doc_links, invariants, invariant_checks
+
+CREATE TABLE IF NOT EXISTS docs (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  hash TEXT NOT NULL,
+  kind TEXT NOT NULL CHECK (kind IN ('overview', 'prd', 'design')),
+  name TEXT NOT NULL,
+  title TEXT NOT NULL,
+  version INTEGER NOT NULL DEFAULT 1,
+  status TEXT NOT NULL CHECK (status IN ('changing', 'locked')) DEFAULT 'changing',
+  file_path TEXT NOT NULL,
+  parent_doc_id INTEGER REFERENCES docs(id) ON DELETE SET NULL,
+  created_at TEXT NOT NULL DEFAULT (datetime('now')),
+  locked_at TEXT,
+  metadata TEXT DEFAULT '{}'
+);
+
+CREATE UNIQUE INDEX IF NOT EXISTS idx_docs_name_version ON docs(name, version);
+
+CREATE TABLE IF NOT EXISTS doc_links (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  from_doc_id INTEGER NOT NULL REFERENCES docs(id) ON DELETE CASCADE,
+  to_doc_id INTEGER NOT NULL REFERENCES docs(id) ON DELETE CASCADE,
+  link_type TEXT NOT NULL CHECK (link_type IN ('overview_to_prd', 'overview_to_design', 'prd_to_design', 'design_patch')),
+  created_at TEXT NOT NULL DEFAULT (datetime('now')),
+  UNIQUE(from_doc_id, to_doc_id),
+  CHECK(from_doc_id != to_doc_id)
+);
+
+CREATE TABLE IF NOT EXISTS task_doc_links (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  task_id TEXT NOT NULL REFERENCES tasks(id) ON DELETE CASCADE,
+  doc_id INTEGER NOT NULL REFERENCES docs(id) ON DELETE CASCADE,
+  link_type TEXT NOT NULL CHECK (link_type IN ('implements', 'references')),
+  created_at TEXT NOT NULL DEFAULT (datetime('now')),
+  UNIQUE(task_id, doc_id)
+);
+
+CREATE TABLE IF NOT EXISTS invariants (
+  id TEXT PRIMARY KEY,
+  rule TEXT NOT NULL,
+  enforcement TEXT NOT NULL CHECK (enforcement IN ('integration_test', 'linter', 'llm_as_judge')),
+  doc_id INTEGER NOT NULL REFERENCES docs(id) ON DELETE CASCADE,
+  subsystem TEXT,
+  test_ref TEXT,
+  lint_rule TEXT,
+  prompt_ref TEXT,
+  status TEXT NOT NULL CHECK (status IN ('active', 'deprecated')) DEFAULT 'active',
+  created_at TEXT NOT NULL DEFAULT (datetime('now')),
+  metadata TEXT DEFAULT '{}'
+);
+
+CREATE TABLE IF NOT EXISTS invariant_checks (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  invariant_id TEXT NOT NULL REFERENCES invariants(id) ON DELETE CASCADE,
+  passed INTEGER NOT NULL CHECK (passed IN (0, 1)),
+  details TEXT,
+  checked_at TEXT NOT NULL DEFAULT (datetime('now')),
+  duration_ms INTEGER
+);
+
+CREATE INDEX IF NOT EXISTS idx_invariant_checks_invariant_id ON invariant_checks(invariant_id);
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (22, datetime('now'));

package/migrations/023_task_labels.sql

@@ -0,0 +1,29 @@
+-- Migration 023: Task labels (Linear-style simplified label system)
+-- Tables: task_labels, task_label_assignments
+
+CREATE TABLE IF NOT EXISTS task_labels (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  name TEXT NOT NULL,
+  color TEXT NOT NULL,
+  created_at TEXT NOT NULL DEFAULT (datetime('now')),
+  updated_at TEXT NOT NULL DEFAULT (datetime('now'))
+);
+
+CREATE UNIQUE INDEX IF NOT EXISTS idx_task_labels_name_ci
+  ON task_labels(lower(name));
+
+CREATE TABLE IF NOT EXISTS task_label_assignments (
+  task_id TEXT NOT NULL REFERENCES tasks(id) ON DELETE CASCADE,
+  label_id INTEGER NOT NULL REFERENCES task_labels(id) ON DELETE CASCADE,
+  created_at TEXT NOT NULL DEFAULT (datetime('now')),
+  PRIMARY KEY (task_id, label_id)
+);
+
+CREATE INDEX IF NOT EXISTS idx_task_label_assignments_task
+  ON task_label_assignments(task_id);
+
+CREATE INDEX IF NOT EXISTS idx_task_label_assignments_label
+  ON task_label_assignments(label_id);
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (23, datetime('now'));

package/migrations/024_task_assignment.sql

@@ -0,0 +1,27 @@
+-- Migration 024: Task assignment columns with legacy backfill
+-- Tables: tasks (alter)
+
+ALTER TABLE tasks ADD COLUMN assignee_type TEXT
+  CHECK (assignee_type IN ('human', 'agent'));
+
+ALTER TABLE tasks ADD COLUMN assignee_id TEXT;
+
+ALTER TABLE tasks ADD COLUMN assigned_at TEXT;
+
+ALTER TABLE tasks ADD COLUMN assigned_by TEXT;
+
+UPDATE tasks
+SET assignee_type = 'agent',
+    assignee_id = NULL,
+    assigned_at = datetime('now'),
+    assigned_by = 'migration:024_task_assignment'
+WHERE assignee_type IS NULL;
+
+CREATE INDEX IF NOT EXISTS idx_tasks_assignee_type
+  ON tasks(assignee_type);
+
+CREATE INDEX IF NOT EXISTS idx_tasks_assignee_type_id
+  ON tasks(assignee_type, assignee_id);
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (24, datetime('now'));

package/migrations/025_run_heartbeat_state.sql

@@ -0,0 +1,21 @@
+-- Version: 025
+-- Migration: Add run heartbeat state table for transcript-progress monitoring
+
+CREATE TABLE IF NOT EXISTS run_heartbeat_state (
+    run_id TEXT PRIMARY KEY REFERENCES runs(id) ON DELETE CASCADE,
+    last_check_at TEXT NOT NULL,
+    last_activity_at TEXT NOT NULL,
+    stdout_bytes INTEGER NOT NULL DEFAULT 0 CHECK (stdout_bytes >= 0),
+    stderr_bytes INTEGER NOT NULL DEFAULT 0 CHECK (stderr_bytes >= 0),
+    transcript_bytes INTEGER NOT NULL DEFAULT 0 CHECK (transcript_bytes >= 0),
+    last_delta_bytes INTEGER NOT NULL DEFAULT 0 CHECK (last_delta_bytes >= 0),
+    updated_at TEXT NOT NULL DEFAULT (datetime('now'))
+);
+
+CREATE INDEX IF NOT EXISTS idx_run_heartbeat_check_at
+ON run_heartbeat_state(last_check_at);
+
+CREATE INDEX IF NOT EXISTS idx_run_heartbeat_activity_at
+ON run_heartbeat_state(last_activity_at);
+
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (25, datetime('now'));

package/migrations/026_task_order_composite_indexes.sql

@@ -0,0 +1,17 @@
+-- Version: 026
+-- Migration: Add composite task ordering indexes for dashboard task list polling
+--
+-- Dashboard /api/tasks uses ORDER BY score DESC, id ASC with optional status filter.
+-- Existing single-column indexes can trigger temporary sort B-trees under pagination.
+-- These composite indexes support index-backed ordering for both query shapes:
+--   1) Unfiltered: ORDER BY score DESC, id ASC
+--   2) Filtered:   WHERE status IN (...) ORDER BY score DESC, id ASC
+
+CREATE INDEX IF NOT EXISTS idx_tasks_score_id
+  ON tasks(score DESC, id ASC);
+
+CREATE INDEX IF NOT EXISTS idx_tasks_status_score_id
+  ON tasks(status, score DESC, id ASC);
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (26, datetime('now'));

package/migrations/027_runs_events_hot_query_indexes.sql

@@ -0,0 +1,35 @@
+-- Version: 027
+-- Migration: Add runs/events composite + expression indexes for watchdog/dashboard trace hot paths
+--
+-- Targets:
+-- 1) runs list/filter/sort queries:
+--      ORDER BY started_at DESC, id ASC
+--      optional WHERE status = ? or agent = ?
+-- 2) orphan-active task checks:
+--      EXISTS/NOT EXISTS on runs(task_id, status='running')
+-- 3) watchdog worker burst checks:
+--      json_extract(metadata, '$.worker') + status + started_at window
+-- 4) trace error spans:
+--      events WHERE event_type='span' AND json_extract(metadata, '$.status')='error'
+--      ORDER BY timestamp DESC LIMIT ?
+
+CREATE INDEX IF NOT EXISTS idx_runs_started_id
+  ON runs(started_at DESC, id ASC);
+
+CREATE INDEX IF NOT EXISTS idx_runs_status_started_id
+  ON runs(status, started_at DESC, id ASC);
+
+CREATE INDEX IF NOT EXISTS idx_runs_agent_started_id
+  ON runs(agent, started_at DESC, id ASC);
+
+CREATE INDEX IF NOT EXISTS idx_runs_task_status
+  ON runs(task_id, status);
+
+CREATE INDEX IF NOT EXISTS idx_runs_worker_status_started
+  ON runs(json_extract(metadata, '$.worker'), status, started_at DESC);
+
+CREATE INDEX IF NOT EXISTS idx_events_type_metadata_status_timestamp
+  ON events(event_type, json_extract(metadata, '$.status'), timestamp DESC);
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (27, datetime('now'));

package/migrations/028_task_group_context.sql

@@ -0,0 +1,13 @@
+-- Version: 028
+-- Migration: Add task group context storage and source lookup index
+--
+-- Adds first-class task-group context that can be inherited across parent/child lineage.
+
+ALTER TABLE tasks ADD COLUMN group_context TEXT;
+
+CREATE INDEX IF NOT EXISTS idx_tasks_group_context_present
+  ON tasks(id, updated_at DESC)
+  WHERE group_context IS NOT NULL AND length(trim(group_context)) > 0;
+
+-- Record this migration
+INSERT OR IGNORE INTO schema_version (version, applied_at) VALUES (28, datetime('now'));

package/package.json

@@ -1,48 +1,43 @@
 {
   "name": "@jamesaphoenix/tx-core",
-  "version": "0.5.8",
+  "version": "0.5.9",
   "description": "Core business logic for tx - Effect-TS services and repositories",
   "type": "module",
   "main": "./dist/index.js",
   "types": "./dist/index.d.ts",
   "exports": {
     ".": {
-      "bun": "./src/index.ts",
       "types": "./dist/index.d.ts",
       "import": "./dist/index.js"
     },
     "./services": {
-      "bun": "./src/services/index.ts",
       "types": "./dist/services/index.d.ts",
       "import": "./dist/services/index.js"
     },
     "./repo": {
-      "bun": "./src/repo/index.ts",
       "types": "./dist/repo/index.d.ts",
       "import": "./dist/repo/index.js"
     },
     "./schemas": {
-      "bun": "./src/schemas/index.ts",
       "types": "./dist/schemas/index.d.ts",
       "import": "./dist/schemas/index.js"
     },
     "./mappers": {
-      "bun": "./src/mappers/index.ts",
       "types": "./dist/mappers/index.d.ts",
       "import": "./dist/mappers/index.js"
     },
     "./layer": {
-      "bun": "./src/layer.ts",
       "types": "./dist/layer.d.ts",
       "import": "./dist/layer.js"
     }
   },
   "files": [
     "dist",
+    "migrations",
     "README.md"
   ],
   "scripts": {
-    "build": "tsc -b",
+    "build": "tsc -b && cp -r ../../migrations ./migrations",
     "typecheck": "tsc --noEmit",
     "lint": "eslint src/",
     "test": "bunx --bun vitest run --passWithNoTests"