@jahanxu/trellis 0.5.8 → 0.5.9

package/dist/configurators/index.js

@@ -79,7 +79,7 @@ const PLATFORM_FUNCTIONS = {
             const files = new Map();
             // Commands
             for (const cmd of getIflowCommands()) {
-                files.set(`.iflow/commands/${cmd.name}.md`, cmd.content);
+                files.set(`.iflow/commands/trellis/${cmd.name}.md`, cmd.content);
             }
             // Agents
             for (const agent of getIflowAgents()) {

package/dist/configurators/index.js.map

@@ -1 +1 @@
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package/dist/migrations/manifests/0.3.0-beta.0.json

@@ -3,8 +3,8 @@
   "description": "Command path namespace migration + Shell to Python script migration",
   "breaking": true,
   "recommendMigrate": true,
-  "changelog": "BREAKING: All shell scripts (.sh) have been replaced by Python scripts (.py). Requires Python 3.10+. The multi-agent/ directory is now multi_agent/ (underscore). Run with --migrate to remove legacy shell scripts.",
-  "migrationGuide": "# Migration Guide: v0.3.0 Shell to Python\n\n## Overview\n\nAll shell scripts (.sh) have been replaced by Python scripts (.py). This affects any custom workflows, slash commands, or documentation that references the old scripts.\n\n## Requirements\n\n- Python 3.10 or higher\n\n## What Changed\n\n### Script Extensions\n\n| Old Path | New Path |\n|----------|----------|\n| `.trellis/scripts/*.sh` | `.trellis/scripts/*.py` |\n| `.trellis/scripts/common/*.sh` | `.trellis/scripts/common/*.py` |\n| `.trellis/scripts/multi-agent/*.sh` | `.trellis/scripts/multi_agent/*.py` |\n\n### Directory Rename\n\n| Old | New |\n|-----|-----|\n| `multi-agent/` (hyphen) | `multi_agent/` (underscore) |\n\n### Invocation Change\n\n| Old | New |\n|-----|-----|\n| `./script.sh` | `python3 ./script.py` |\n| `./.trellis/scripts/task.sh` | `python3 ./.trellis/scripts/task.py` |\n\n## Files to Check\n\nSearch your project for these patterns and update them:\n\n```bash\n# Find files with old .sh references\ngrep -r '\\.trellis/scripts.*\\.sh' .claude/ .cursor/ .trellis/\n\n# Find files with old multi-agent directory\ngrep -r 'multi-agent/' .claude/ .cursor/ .trellis/\n```\n\n## Common Replacements\n\n```\n# Task management\n./.trellis/scripts/task.sh → python3 ./.trellis/scripts/task.py\n\n# Context\n./.trellis/scripts/get-context.sh → python3 ./.trellis/scripts/get_context.py\n\n# Developer\n./.trellis/scripts/get-developer.sh → python3 ./.trellis/scripts/get_developer.py\n./.trellis/scripts/init-developer.sh → python3 ./.trellis/scripts/init_developer.py\n\n# Session\n./.trellis/scripts/add-session.sh → python3 ./.trellis/scripts/add_session.py\n\n# Multi-agent\n./.trellis/scripts/multi-agent/start.sh → python3 ./.trellis/scripts/multi_agent/start.py\n./.trellis/scripts/multi-agent/status.sh → python3 ./.trellis/scripts/multi_agent/status.py\n./.trellis/scripts/multi-agent/plan.sh → python3 ./.trellis/scripts/multi_agent/plan.py\n./.trellis/scripts/multi-agent/cleanup.sh → python3 ./.trellis/scripts/multi_agent/cleanup.py\n./.trellis/scripts/multi-agent/create-pr.sh → python3 ./.trellis/scripts/multi_agent/create_pr.py\n```\n\n## After Migration\n\nRun `trellis update --migrate` to remove the old shell scripts from your project.",
+  "changelog": "BREAKING: All shell scripts (.sh) have been replaced by Python scripts (.py). Requires Python 3.10+. The multi-agent/ directory is now multi_agent/ (underscore). Run with --migrate to archive legacy shell scripts to scripts-shell-archive/.",
+  "migrationGuide": "# Migration Guide: v0.3.0 Shell to Python\n\n## Overview\n\nAll shell scripts (.sh) have been replaced by Python scripts (.py). This affects any custom workflows, slash commands, or documentation that references the old scripts.\n\n## Requirements\n\n- Python 3.10 or higher\n\n## What Changed\n\n### Script Extensions\n\n| Old Path | New Path |\n|----------|----------|\n| `.trellis/scripts/*.sh` | `.trellis/scripts/*.py` |\n| `.trellis/scripts/common/*.sh` | `.trellis/scripts/common/*.py` |\n| `.trellis/scripts/multi-agent/*.sh` | `.trellis/scripts/multi_agent/*.py` |\n\n### Directory Rename\n\n| Old | New |\n|-----|-----|\n| `multi-agent/` (hyphen) | `multi_agent/` (underscore) |\n\n### Invocation Change\n\n| Old | New |\n|-----|-----|\n| `./script.sh` | `python3 ./script.py` |\n| `./.trellis/scripts/task.sh` | `python3 ./.trellis/scripts/task.py` |\n\n## Files to Check\n\nSearch your project for these patterns and update them:\n\n```bash\n# Find files with old .sh references\ngrep -r '\\.trellis/scripts.*\\.sh' .claude/ .cursor/ .trellis/\n\n# Find files with old multi-agent directory\ngrep -r 'multi-agent/' .claude/ .cursor/ .trellis/\n```\n\n## Common Replacements\n\n```\n# Task management\n./.trellis/scripts/task.sh → python3 ./.trellis/scripts/task.py\n\n# Context\n./.trellis/scripts/get-context.sh → python3 ./.trellis/scripts/get_context.py\n\n# Developer\n./.trellis/scripts/get-developer.sh → python3 ./.trellis/scripts/get_developer.py\n./.trellis/scripts/init-developer.sh → python3 ./.trellis/scripts/init_developer.py\n\n# Session\n./.trellis/scripts/add-session.sh → python3 ./.trellis/scripts/add_session.py\n\n# Multi-agent\n./.trellis/scripts/multi-agent/start.sh → python3 ./.trellis/scripts/multi_agent/start.py\n./.trellis/scripts/multi-agent/status.sh → python3 ./.trellis/scripts/multi_agent/status.py\n./.trellis/scripts/multi-agent/plan.sh → python3 ./.trellis/scripts/multi_agent/plan.py\n./.trellis/scripts/multi-agent/cleanup.sh → python3 ./.trellis/scripts/multi_agent/cleanup.py\n./.trellis/scripts/multi-agent/create-pr.sh → python3 ./.trellis/scripts/multi_agent/create_pr.py\n```\n\n## After Migration\n\nRun `trellis update --migrate` to archive the old shell scripts to `.trellis/scripts-shell-archive/`.",
   "aiInstructions": "1. Search for files containing old patterns:\n   - `.trellis/scripts/*.sh` references\n   - `multi-agent/` directory references (should be `multi_agent/`)\n   - `python script.py` without `python3` (Windows compatibility)\n2. For each file found, apply the replacements from the migration guide\n3. IMPORTANT: Always use `python3` explicitly, not just `python` or relying on shebang (Windows doesn't support shebang)\n4. Check ALL locations: docstrings, help text, error messages, markdown docs\n5. Verify the changes compile/work correctly\n6. After all files are updated, remind user to run `trellis update --migrate`",
   "migrations": [
     {
@@ -177,102 +177,121 @@
     },
 
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/get-developer.sh",
-      "description": "Remove legacy shell script (replaced by Python)"
+      "to": ".trellis/scripts-shell-archive/get-developer.sh",
+      "description": "Archive legacy shell script (replaced by Python)"
     },
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/init-developer.sh",
-      "description": "Remove legacy shell script (replaced by Python)"
+      "to": ".trellis/scripts-shell-archive/init-developer.sh",
+      "description": "Archive legacy shell script (replaced by Python)"
     },
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/get-context.sh",
-      "description": "Remove legacy shell script (replaced by Python)"
+      "to": ".trellis/scripts-shell-archive/get-context.sh",
+      "description": "Archive legacy shell script (replaced by Python)"
     },
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/task.sh",
-      "description": "Remove legacy shell script (replaced by Python)"
+      "to": ".trellis/scripts-shell-archive/task.sh",
+      "description": "Archive legacy shell script (replaced by Python)"
     },
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/add-session.sh",
-      "description": "Remove legacy shell script (replaced by Python)"
+      "to": ".trellis/scripts-shell-archive/add-session.sh",
+      "description": "Archive legacy shell script (replaced by Python)"
     },
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/create-bootstrap.sh",
-      "description": "Remove legacy shell script (replaced by Python)"
+      "to": ".trellis/scripts-shell-archive/create-bootstrap.sh",
+      "description": "Archive legacy shell script (replaced by Python)"
     },
 
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/common/paths.sh",
-      "description": "Remove legacy shell script (replaced by Python)"
+      "to": ".trellis/scripts-shell-archive/common/paths.sh",
+      "description": "Archive legacy shell script (replaced by Python)"
     },
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/common/developer.sh",
-      "description": "Remove legacy shell script (replaced by Python)"
+      "to": ".trellis/scripts-shell-archive/common/developer.sh",
+      "description": "Archive legacy shell script (replaced by Python)"
     },
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/common/git-context.sh",
-      "description": "Remove legacy shell script (replaced by Python)"
+      "to": ".trellis/scripts-shell-archive/common/git-context.sh",
+      "description": "Archive legacy shell script (replaced by Python)"
     },
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/common/worktree.sh",
-      "description": "Remove legacy shell script (replaced by Python)"
+      "to": ".trellis/scripts-shell-archive/common/worktree.sh",
+      "description": "Archive legacy shell script (replaced by Python)"
     },
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/common/task-queue.sh",
-      "description": "Remove legacy shell script (replaced by Python)"
+      "to": ".trellis/scripts-shell-archive/common/task-queue.sh",
+      "description": "Archive legacy shell script (replaced by Python)"
     },
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/common/task-utils.sh",
-      "description": "Remove legacy shell script (replaced by Python)"
+      "to": ".trellis/scripts-shell-archive/common/task-utils.sh",
+      "description": "Archive legacy shell script (replaced by Python)"
     },
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/common/phase.sh",
-      "description": "Remove legacy shell script (replaced by Python)"
+      "to": ".trellis/scripts-shell-archive/common/phase.sh",
+      "description": "Archive legacy shell script (replaced by Python)"
     },
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/common/registry.sh",
-      "description": "Remove legacy shell script (replaced by Python)"
+      "to": ".trellis/scripts-shell-archive/common/registry.sh",
+      "description": "Archive legacy shell script (replaced by Python)"
     },
 
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/multi-agent/start.sh",
-      "description": "Remove legacy shell script (replaced by Python in multi_agent/)"
+      "to": ".trellis/scripts-shell-archive/multi-agent/start.sh",
+      "description": "Archive legacy shell script (replaced by Python in multi_agent/)"
     },
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/multi-agent/plan.sh",
-      "description": "Remove legacy shell script (replaced by Python in multi_agent/)"
+      "to": ".trellis/scripts-shell-archive/multi-agent/plan.sh",
+      "description": "Archive legacy shell script (replaced by Python in multi_agent/)"
     },
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/multi-agent/status.sh",
-      "description": "Remove legacy shell script (replaced by Python in multi_agent/)"
+      "to": ".trellis/scripts-shell-archive/multi-agent/status.sh",
+      "description": "Archive legacy shell script (replaced by Python in multi_agent/)"
     },
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/multi-agent/create-pr.sh",
-      "description": "Remove legacy shell script (replaced by Python in multi_agent/)"
+      "to": ".trellis/scripts-shell-archive/multi-agent/create-pr.sh",
+      "description": "Archive legacy shell script (replaced by Python in multi_agent/)"
     },
     {
-      "type": "delete",
+      "type": "rename",
       "from": ".trellis/scripts/multi-agent/cleanup.sh",
-      "description": "Remove legacy shell script (replaced by Python in multi_agent/)"
+      "to": ".trellis/scripts-shell-archive/multi-agent/cleanup.sh",
+      "description": "Archive legacy shell script (replaced by Python in multi_agent/)"
     }
   ],
-  "notes": "Part 1: Command namespace migration - Claude Code uses subdirectory namespacing (.claude/commands/trellis/), Cursor uses filename prefix (.cursor/commands/trellis-*). Part 2: Shell to Python migration - All .trellis/scripts/*.sh files are replaced by Python equivalents. The multi-agent/ directory (with hyphen) is replaced by multi_agent/ (with underscore). Empty directories are automatically cleaned up after file deletion."
+  "notes": "Part 1: Command namespace migration - Claude Code uses subdirectory namespacing (.claude/commands/trellis/), Cursor uses filename prefix (.cursor/commands/trellis-*). Part 2: Shell to Python migration - All .trellis/scripts/*.sh files are archived to .trellis/scripts-shell-archive/ (not deleted). The multi-agent/ directory (with hyphen) is replaced by multi_agent/ (with underscore). Empty source directories are automatically cleaned up after rename."
 }

package/dist/migrations/manifests/0.3.0.json

@@ -5,7 +5,7 @@
   "recommendMigrate": false,
   "changelog": "**BREAKING: Shell to Python Migration**\n- All `.trellis/scripts/*.sh` replaced by Python equivalents (requires Python 3.10+)\n- Directory rename: `multi-agent/` → `multi_agent/` (underscore)\n- Command namespace migration: Claude uses `.claude/commands/trellis/` subdirectory, Cursor uses `trellis-` prefix\n\n**New Platforms (9 total):**\n- Codex (`.agents/skills/`) — OpenAI's CLI agent\n- Kilo (`.kilocode/commands/trellis/`) — commands-only platform\n- Kiro (`.kiro/skills/`) — skills-based platform\n- Gemini CLI (`.gemini/commands/trellis/*.toml`) — TOML-format commands\n- Antigravity (`.agent/workflows/`) — workflow-based platform\n- Plus existing: Claude Code, Cursor, iFlow, OpenCode\n\n**Architecture:**\n- Centralized platform registry replacing scattered init/update logic\n- Extracted `resolvePlaceholders()` to shared module\n- Deduplicated `compareVersions()` to `utils/compare-versions.ts`\n- Remote spec templates from docs repo\n\n**Key Fixes:**\n- Windows encoding: `_configure_stream` with reconfigure/detach fallback for stdout/stderr\n- Windows subprocess: `CREATE_NEW_PROCESS_GROUP` on win32, `start_new_session` on Unix\n- Template placeholder roundtrip (`{{PYTHON_CMD}}` resolution)\n- CLI version comparison for prerelease versions\n- add_session.py table separator tolerance for formatted markdown\n\n**Quality:**\n- 312+ tests across 17+ files (unit, integration, regression)\n- @vitest/coverage-v8 support\n- Executable spec enforcement (7-section structure)",
   "migrations": [],
-  "migrationGuide": "# Migration Guide: v0.2.x → v0.3.0\n\n## Overview\n\nAll shell scripts (.sh) have been replaced by Python scripts (.py). This affects any custom workflows, slash commands, or documentation that references the old scripts.\n\n## Requirements\n\n- Python 3.10 or higher\n\n## What Changed\n\n### Script Extensions\n\n| Old Path | New Path |\n|----------|----------|\n| `.trellis/scripts/*.sh` | `.trellis/scripts/*.py` |\n| `.trellis/scripts/common/*.sh` | `.trellis/scripts/common/*.py` |\n| `.trellis/scripts/multi-agent/*.sh` | `.trellis/scripts/multi_agent/*.py` |\n\n### Directory Rename\n\n| Old | New |\n|-----|-----|\n| `multi-agent/` (hyphen) | `multi_agent/` (underscore) |\n\n### Invocation Change\n\n| Old | New |\n|-----|-----|\n| `./script.sh` | `python3 ./script.py` |\n| `./.trellis/scripts/task.sh` | `python3 ./.trellis/scripts/task.py` |\n\n## After Migration\n\nRun `trellis update --migrate` to remove the old shell scripts from your project.",
+  "migrationGuide": "# Migration Guide: v0.2.x → v0.3.0\n\n## Overview\n\nAll shell scripts (.sh) have been replaced by Python scripts (.py). This affects any custom workflows, slash commands, or documentation that references the old scripts.\n\n## Requirements\n\n- Python 3.10 or higher\n\n## What Changed\n\n### Script Extensions\n\n| Old Path | New Path |\n|----------|----------|\n| `.trellis/scripts/*.sh` | `.trellis/scripts/*.py` |\n| `.trellis/scripts/common/*.sh` | `.trellis/scripts/common/*.py` |\n| `.trellis/scripts/multi-agent/*.sh` | `.trellis/scripts/multi_agent/*.py` |\n\n### Directory Rename\n\n| Old | New |\n|-----|-----|\n| `multi-agent/` (hyphen) | `multi_agent/` (underscore) |\n\n### Invocation Change\n\n| Old | New |\n|-----|-----|\n| `./script.sh` | `python3 ./script.py` |\n| `./.trellis/scripts/task.sh` | `python3 ./.trellis/scripts/task.py` |\n\n## After Migration\n\nRun `trellis update --migrate` to archive the old shell scripts to `.trellis/scripts-shell-archive/`.",
   "aiInstructions": "When assisting users upgrading from 0.2.x to 0.3.0:\n1. Search for files containing `.trellis/scripts/*.sh` references and update to `.py`\n2. Replace `multi-agent/` directory references with `multi_agent/` (underscore)\n3. Always use `python3` explicitly, not just `python` (Windows compatibility)\n4. Check ALL locations: docstrings, help text, error messages, markdown docs\n5. Run `trellis update --migrate` to remove legacy shell scripts\n\nNote: Users upgrading from any 0.3.0 prerelease (beta/rc) need no file changes — only the version stamp is updated.",
-  "notes": "Aggregated release covering beta.0 through rc.6. All file migrations were applied in beta.0. Users upgrading from any 0.3.0 prerelease will see no file changes — only the .version stamp is updated. New projects get all 9 platform options via `trellis init`."
+  "notes": "Aggregated release covering beta.0 through rc.6. All file migrations were applied in beta.0 — shell scripts are archived to .trellis/scripts-shell-archive/ (not deleted). Users upgrading from any 0.3.0 prerelease will see no file changes — only the .version stamp is updated. New projects get all 9 platform options via `trellis init`."
 }

package/dist/migrations/manifests/0.3.1.json

@@ -0,0 +1,9 @@
+{
+  "version": "0.3.1",
+  "description": "SessionStart reinject on clear/compact + spec template project-type awareness",
+  "breaking": false,
+  "recommendMigrate": false,
+  "changelog": "**Enhancements:**\n- feat(hooks): SessionStart hook now fires on `clear` and `compact` events in addition to `startup` — ensures context is always re-injected after session reset (Claude + iFlow)\n\n**Bug Fixes:**\n- fix(iflow): command templates now write to `.iflow/commands/trellis/` subdirectory (was missing `trellis/` prefix)\n- fix(update): `collectTemplateFiles()` now checks `fs.existsSync` for backend/frontend spec dirs — prevents ghost spec files on project types that don't have them\n- fix(init): `createSpecTemplates()` respects project type — backend-only projects skip frontend spec, vice versa\n- fix(templates): removed dead `guidesCrossPlatformThinkingGuideContent` export and dead links in guides/index.md.txt",
+  "migrations": [],
+  "notes": "No migration required. Template-level changes only — run `trellis update` to sync. The settings.json changes (clear/compact matchers) will be applied automatically if the file hasn't been user-modified."
+}

package/dist/templates/claude/settings.json

@@ -10,6 +10,26 @@
             "timeout": 10
           }
         ]
+      },
+      {
+        "matcher": "clear",
+        "hooks": [
+          {
+            "type": "command",
+            "command": "{{PYTHON_CMD}} .claude/hooks/session-start.py",
+            "timeout": 10
+          }
+        ]
+      },
+      {
+        "matcher": "compact",
+        "hooks": [
+          {
+            "type": "command",
+            "command": "{{PYTHON_CMD}} .claude/hooks/session-start.py",
+            "timeout": 10
+          }
+        ]
       }
     ],
     "PreToolUse": [

package/dist/templates/iflow/settings.json

@@ -10,6 +10,26 @@
                         "timeout": 10
                     }
                 ]
+            },
+            {
+                "matcher": "clear",
+                "hooks": [
+                    {
+                        "type": "command",
+                        "command": "{{PYTHON_CMD}} .iflow/hooks/session-start.py",
+                        "timeout": 10
+                    }
+                ]
+            },
+            {
+                "matcher": "compact",
+                "hooks": [
+                    {
+                        "type": "command",
+                        "command": "{{PYTHON_CMD}} .iflow/hooks/session-start.py",
+                        "timeout": 10
+                    }
+                ]
             }
         ],
         "PreToolUse": [

package/dist/templates/markdown/spec/guides/code-reuse-thinking-guide.md.txt

@@ -84,6 +84,19 @@ When you've made similar changes to multiple files:
 
 ---
 
+## Gotcha: Asymmetric Mechanisms Producing Same Output
+
+**Problem**: When two different mechanisms must produce the same file set (e.g., recursive directory copy for init vs. manual `files.set()` for update), structural changes (renaming, moving, adding subdirectories) only propagate through the automatic mechanism. The manual one silently drifts.
+
+**Symptom**: Init works perfectly, but update creates files at wrong paths or misses files entirely.
+
+**Prevention checklist**:
+- [ ] When migrating directory structures, search for ALL code paths that reference the old structure
+- [ ] If one path is auto-derived (glob/copy) and another is manually listed, the manual one needs updating
+- [ ] Add a regression test that compares outputs from both mechanisms
+
+---
+
 ## Checklist Before Commit
 
 - [ ] Searched for existing similar code

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jahanxu/trellis",
-  "version": "0.5.8",
+  "version": "0.5.9",
   "description": "AI capabilities grow like ivy — Trellis provides the structure to guide them along a disciplined path",
   "type": "module",
   "main": "./dist/index.js",