@jafreck/lore 0.3.6 → 0.3.8

package/dist/embeddings/embedder.d.ts.map

@@ -1 +1 @@
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package/dist/embeddings/embedder.js

@@ -73,11 +73,11 @@ export function tokenAwareBatch(items, getText) {
  * Runs ONNX models natively in Node — zero Python dependency.
  *
  * Auto-detects the best available ONNX execution provider:
- *   - `webgpu` when available (Linux/Windows with GPU)
- *   - `coreml` on Apple Silicon (macOS arm64)
- *   - `cpu` everywhere else (always available)
+ *   - `cpu` (always available; only option on macOS with transformers.js v3)
+ *   - `cuda` on Linux x64 with NVIDIA GPU (requires transformers.js v4+)
+ *   - `dml` (DirectML) on Windows (requires transformers.js v4+)
  *
- * Override via `LORE_EMBED_DEVICE` env var (e.g. `cpu`, `coreml`, `webgpu`).
+ * Override via `LORE_EMBED_DEVICE` env var (e.g. `cpu`, `cuda`, `dml`).
  * Override quantization via `LORE_EMBED_DTYPE` env var (e.g. `q8`, `q4`, `fp16`).
  *
  * Call `init()` first to download/load the model and detect its embedding
@@ -92,7 +92,7 @@ export class TransformersJsProvider {
     initialized = false;
     constructor(modelName, dtype) {
         this.modelName = modelName;
-        this.dtype = dtype ?? process.env['LORE_EMBED_DTYPE'] ?? 'fp32';
+        this.dtype = dtype ?? process.env['LORE_EMBED_DTYPE'] ?? 'q8';
     }
     /** Embedding dimensionality — available only after `init()`. */
     get dims() {
@@ -101,7 +101,7 @@ export class TransformersJsProvider {
         }
         return this._dims;
     }
-    /** ONNX execution provider selected during init (cpu/coreml/webgpu). */
+    /** ONNX execution provider selected during init. */
     get device() {
         return this._device ?? 'unknown';
     }
@@ -112,13 +112,29 @@ export class TransformersJsProvider {
     async init() {
         if (this.initialized)
             return;
-        const device = this.detectDevice();
-        this._device = device;
+        const preferredDevice = this.detectDevice();
         const { pipeline } = await import('@huggingface/transformers');
-        this._pipeline = await pipeline('feature-extraction', this.modelName, {
-            device: device,
-            ...(this.dtype !== 'fp32' && { dtype: this.dtype }),
-        });
+        // Try the preferred device, fall back to CPU if unsupported
+        let device = preferredDevice;
+        try {
+            this._pipeline = await pipeline('feature-extraction', this.modelName, {
+                device: device,
+                ...(this.dtype !== 'fp32' && { dtype: this.dtype }),
+            });
+        }
+        catch (err) {
+            if (device !== 'cpu' && err instanceof Error && err.message.includes('Unsupported device')) {
+                device = 'cpu';
+                this._pipeline = await pipeline('feature-extraction', this.modelName, {
+                    device: 'cpu',
+                    ...(this.dtype !== 'fp32' && { dtype: this.dtype }),
+                });
+            }
+            else {
+                throw err;
+            }
+        }
+        this._device = device;
         // Probe the model to detect dimensionality.
         const probe = await this._pipeline('dimensionality probe', { pooling: 'mean', normalize: true });
         const probeList = probe.tolist();
@@ -146,15 +162,14 @@ export class TransformersJsProvider {
     /**
      * Detect the best available ONNX execution provider.
      * Respects `LORE_EMBED_DEVICE` env var for explicit override.
+     *
+     * Transformers.js v3 / onnxruntime-node 1.21 only supports CPU on all
+     * platforms. GPU providers (CoreML, CUDA, DirectML) require v4+.
      */
     detectDevice() {
         const envDevice = process.env['LORE_EMBED_DEVICE'];
         if (envDevice)
             return envDevice;
-        // CoreML is available on Apple Silicon via onnxruntime-node
-        if (process.platform === 'darwin' && process.arch === 'arm64') {
-            return 'coreml';
-        }
         return 'cpu';
     }
 }
@@ -201,8 +216,9 @@ export class LazyEmbeddingProvider {
 }
 // ─── Default model ────────────────────────────────────────────────────────────
 /**
- * Default embedding model — `Qwen/Qwen3-Embedding-0.6B` is a compact,
- * 1024-dim model with strong multilingual and code understanding.
+ * Default embedding model — the ONNX-community variant of Qwen3-Embedding-0.6B
+ * ships pre-converted ONNX weights compatible with all execution providers
+ * (cpu, cuda, dml). 1024-dim, strong multilingual and code understanding.
  */
-export const DEFAULT_EMBEDDING_MODEL = 'Qwen/Qwen3-Embedding-0.6B';
+export const DEFAULT_EMBEDDING_MODEL = 'onnx-community/Qwen3-Embedding-0.6B-ONNX';
 //# sourceMappingURL=embedder.js.map

package/dist/embeddings/embedder.js.map

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package/dist/index.d.ts

@@ -22,6 +22,8 @@ export { installGitHooks } from './git/hooks.js';
 export type { InstallGitHooksOptions } from './git/hooks.js';
 export type { EffectiveLspSettings, LspSettingsOverrides } from './lsp/config.js';
 export type { EffectiveScipSettings, ScipSettingsOverrides } from './scip/config.js';
+export { installAllMissing as installScipIndexers, SCIP_INSTALL_SPECS } from './scip/installer.js';
+export type { ScipInstallResult, ScipInstallSpec } from './scip/installer.js';
 export { TransformersJsProvider, LazyEmbeddingProvider, DEFAULT_EMBEDDING_MODEL, tokenAwareBatch, hashEmbeddingText, buildStructuralEmbeddingText } from './embeddings/embedder.js';
 export type { EmbeddingProvider, OnnxDtype } from './embeddings/embedder.js';
 export type { ExtractionResult, RawCallRef, RawImport, RawSymbol, SymbolExtractor, } from './parsing/extractors/types.js';
@@ -29,18 +31,19 @@ export { RESOLUTION_METHODS, RESOLVED_METHODS, UNRESOLVED_METHODS } from './reso
 export type { ResolutionMethod } from './resolution/resolution-method.js';
 export { IndexPipeline } from './indexer/pipeline.js';
 export type { PipelineContext, PipelineStage } from './indexer/pipeline.js';
-export { ScipSourceStage, SourceIndexStage, DocsIndexStage, ImportResolutionStage, DependencyApiStage, ScipEnrichmentStage, LspEnrichmentStage, EmbeddingStage, } from './indexer/stages/index.js';
+export { ScipIndexerStage, SourceIndexStage, DocsIndexStage, ImportResolutionStage, DependencyApiStage, LspEnrichmentStage, EmbeddingStage, } from './indexer/stages/index.js';
 export { LoreRuntime } from './runtime.js';
 export type { RuntimeConfig, Refresher } from './runtime.js';
 export { FileWatcher } from './discovery/watcher.js';
 export type { WatcherOptions } from './discovery/watcher.js';
 export { FilePoller } from './discovery/poller.js';
 export type { PollerOptions } from './discovery/poller.js';
-export { createLoreMcpServer, createLoreMcpServerAsync } from './server/server.js';
+export { createLoreMcpServer } from './server/server.js';
 export type { LoreServerOptions } from './server/server.js';
 export type { SearchObservation, SearchObserver } from './server/tools/search.js';
 export { registerTools } from './server/tool-registry.js';
 export type { ToolModule, ToolDefinition } from './server/tool-registry.js';
+export type { CohesionArgs, CohesionResult } from './server/tools/cohesion.js';
 export { openReadOnly, getSymbolById, getSymbolsByName, listSymbols, getFileById, getFileByPath, listFiles, listResolvedEdges, listTypeRefs, listSymbolRelationships, } from './db/read-only.js';
 export type { SymbolRow, FileRow, ResolvedEdge, ListResolvedEdgesOptions, TypeRefEdge, ListTypeRefsOptions, SymbolRelationshipEdge, ListSymbolRelationshipsOptions, } from './db/read-only.js';
 export { LoreLogger, LogLevel, LOG_LEVEL_NAMES, initLogger, getLogger, resetLogger } from './logger.js';

package/dist/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAGH,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAClD,OAAO,EAAE,MAAM,EAAE,WAAW,EAAE,WAAW,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC;AACpF,YAAY,EAAE,QAAQ,EAAE,MAAM,gBAAgB,CAAC;AAC/C,OAAO,EAAE,kBAAkB,EAAE,QAAQ,EAAE,YAAY,EAAE,MAAM,4BAA4B,CAAC;AACxF,OAAO,EACL,kBAAkB,EAClB,uBAAuB,EACvB,cAAc,EACd,oBAAoB,GACrB,MAAM,gCAAgC,CAAC;AACxC,YAAY,EACV,QAAQ,EACR,oBAAoB,EACpB,0BAA0B,EAC1B,cAAc,EACd,aAAa,EACb,sBAAsB,EACtB,eAAe,EACf,aAAa,GACd,MAAM,gCAAgC,CAAC;AACxC,OAAO,EAAE,SAAS,EAAE,qBAAqB,EAAE,MAAM,uBAAuB,CAAC;AACzE,YAAY,EAAE,YAAY,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAC;AACrE,OAAO,EAAE,cAAc,EAAE,MAAM,0BAA0B,CAAC;AAE1D,OAAO,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AACjD,YAAY,EAAE,sBAAsB,EAAE,MAAM,gBAAgB,CAAC;AAC7D,YAAY,EAAE,oBAAoB,EAAE,oBAAoB,EAAE,MAAM,iBAAiB,CAAC;AAClF,YAAY,EAAE,qBAAqB,EAAE,qBAAqB,EAAE,MAAM,kBAAkB,CAAC;AACrF,OAAO,EAAE,sBAAsB,EAAE,qBAAqB,EAAE,uBAAuB,EAAE,eAAe,EAAE,iBAAiB,EAAE,4BAA4B,EAAE,MAAM,0BAA0B,CAAC;AACpL,YAAY,EAAE,iBAAiB,EAAE,SAAS,EAAE,MAAM,0BAA0B,CAAC;AAC7E,YAAY,EACV,gBAAgB,EAChB,UAAU,EACV,SAAS,EACT,SAAS,EACT,eAAe,GAChB,MAAM,+BAA+B,CAAC;AAGvC,OAAO,EAAE,kBAAkB,EAAE,gBAAgB,EAAE,kBAAkB,EAAE,MAAM,mCAAmC,CAAC;AAC7G,YAAY,EAAE,gBAAgB,EAAE,MAAM,mCAAmC,CAAC;AAG1E,OAAO,EAAE,aAAa,EAAE,MAAM,uBAAuB,CAAC;AACtD,YAAY,EAAE,eAAe,EAAE,aAAa,EAAE,MAAM,uBAAuB,CAAC;AAC5E,OAAO,EACL,eAAe,EACf,gBAAgB,EAChB,cAAc,EACd,qBAAqB,EACrB,kBAAkB,EAClB,mBAAmB,EACnB,kBAAkB,EAClB,cAAc,GACf,MAAM,2BAA2B,CAAC;AAInC,OAAO,EAAE,WAAW,EAAE,MAAM,cAAc,CAAC;AAC3C,YAAY,EAAE,aAAa,EAAE,SAAS,EAAE,MAAM,cAAc,CAAC;AAG7D,OAAO,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AACrD,YAAY,EAAE,cAAc,EAAE,MAAM,wBAAwB,CAAC;AAC7D,OAAO,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AACnD,YAAY,EAAE,aAAa,EAAE,MAAM,uBAAuB,CAAC;AAG3D,OAAO,EAAE,mBAAmB,EAAE,wBAAwB,EAAE,MAAM,oBAAoB,CAAC;AACnF,YAAY,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAC;AAC5D,YAAY,EAAE,iBAAiB,EAAE,cAAc,EAAE,MAAM,0BAA0B,CAAC;AAClF,OAAO,EAAE,aAAa,EAAE,MAAM,2BAA2B,CAAC;AAC1D,YAAY,EAAE,UAAU,EAAE,cAAc,EAAE,MAAM,2BAA2B,CAAC;AAC5E,OAAO,EACL,YAAY,EACZ,aAAa,EACb,gBAAgB,EAChB,WAAW,EACX,WAAW,EACX,aAAa,EACb,SAAS,EACT,iBAAiB,EACjB,YAAY,EACZ,uBAAuB,GACxB,MAAM,mBAAmB,CAAC;AAC3B,YAAY,EACV,SAAS,EACT,OAAO,EACP,YAAY,EACZ,wBAAwB,EACxB,WAAW,EACX,mBAAmB,EACnB,sBAAsB,EACtB,8BAA8B,GAC/B,MAAM,mBAAmB,CAAC;AAG3B,OAAO,EAAE,UAAU,EAAE,QAAQ,EAAE,eAAe,EAAE,UAAU,EAAE,SAAS,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AACxG,YAAY,EAAE,iBAAiB,EAAE,QAAQ,EAAE,cAAc,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAG9F,OAAO,EAAE,YAAY,EAAE,cAAc,EAAE,cAAc,EAAE,YAAY,EAAE,MAAM,sBAAsB,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAGH,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAClD,OAAO,EAAE,MAAM,EAAE,WAAW,EAAE,WAAW,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC;AACpF,YAAY,EAAE,QAAQ,EAAE,MAAM,gBAAgB,CAAC;AAC/C,OAAO,EAAE,kBAAkB,EAAE,QAAQ,EAAE,YAAY,EAAE,MAAM,4BAA4B,CAAC;AACxF,OAAO,EACL,kBAAkB,EAClB,uBAAuB,EACvB,cAAc,EACd,oBAAoB,GACrB,MAAM,gCAAgC,CAAC;AACxC,YAAY,EACV,QAAQ,EACR,oBAAoB,EACpB,0BAA0B,EAC1B,cAAc,EACd,aAAa,EACb,sBAAsB,EACtB,eAAe,EACf,aAAa,GACd,MAAM,gCAAgC,CAAC;AACxC,OAAO,EAAE,SAAS,EAAE,qBAAqB,EAAE,MAAM,uBAAuB,CAAC;AACzE,YAAY,EAAE,YAAY,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAC;AACrE,OAAO,EAAE,cAAc,EAAE,MAAM,0BAA0B,CAAC;AAE1D,OAAO,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AACjD,YAAY,EAAE,sBAAsB,EAAE,MAAM,gBAAgB,CAAC;AAC7D,YAAY,EAAE,oBAAoB,EAAE,oBAAoB,EAAE,MAAM,iBAAiB,CAAC;AAClF,YAAY,EAAE,qBAAqB,EAAE,qBAAqB,EAAE,MAAM,kBAAkB,CAAC;AACrF,OAAO,EAAE,iBAAiB,IAAI,mBAAmB,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AACnG,YAAY,EAAE,iBAAiB,EAAE,eAAe,EAAE,MAAM,qBAAqB,CAAC;AAC9E,OAAO,EAAE,sBAAsB,EAAE,qBAAqB,EAAE,uBAAuB,EAAE,eAAe,EAAE,iBAAiB,EAAE,4BAA4B,EAAE,MAAM,0BAA0B,CAAC;AACpL,YAAY,EAAE,iBAAiB,EAAE,SAAS,EAAE,MAAM,0BAA0B,CAAC;AAC7E,YAAY,EACV,gBAAgB,EAChB,UAAU,EACV,SAAS,EACT,SAAS,EACT,eAAe,GAChB,MAAM,+BAA+B,CAAC;AAGvC,OAAO,EAAE,kBAAkB,EAAE,gBAAgB,EAAE,kBAAkB,EAAE,MAAM,mCAAmC,CAAC;AAC7G,YAAY,EAAE,gBAAgB,EAAE,MAAM,mCAAmC,CAAC;AAG1E,OAAO,EAAE,aAAa,EAAE,MAAM,uBAAuB,CAAC;AACtD,YAAY,EAAE,eAAe,EAAE,aAAa,EAAE,MAAM,uBAAuB,CAAC;AAC5E,OAAO,EACL,gBAAgB,EAChB,gBAAgB,EAChB,cAAc,EACd,qBAAqB,EACrB,kBAAkB,EAClB,kBAAkB,EAClB,cAAc,GACf,MAAM,2BAA2B,CAAC;AAInC,OAAO,EAAE,WAAW,EAAE,MAAM,cAAc,CAAC;AAC3C,YAAY,EAAE,aAAa,EAAE,SAAS,EAAE,MAAM,cAAc,CAAC;AAG7D,OAAO,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AACrD,YAAY,EAAE,cAAc,EAAE,MAAM,wBAAwB,CAAC;AAC7D,OAAO,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AACnD,YAAY,EAAE,aAAa,EAAE,MAAM,uBAAuB,CAAC;AAG3D,OAAO,EAAE,mBAAmB,EAAE,MAAM,oBAAoB,CAAC;AACzD,YAAY,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAC;AAC5D,YAAY,EAAE,iBAAiB,EAAE,cAAc,EAAE,MAAM,0BAA0B,CAAC;AAClF,OAAO,EAAE,aAAa,EAAE,MAAM,2BAA2B,CAAC;AAC1D,YAAY,EAAE,UAAU,EAAE,cAAc,EAAE,MAAM,2BAA2B,CAAC;AAC5E,YAAY,EAAE,YAAY,EAAE,cAAc,EAAE,MAAM,4BAA4B,CAAC;AAC/E,OAAO,EACL,YAAY,EACZ,aAAa,EACb,gBAAgB,EAChB,WAAW,EACX,WAAW,EACX,aAAa,EACb,SAAS,EACT,iBAAiB,EACjB,YAAY,EACZ,uBAAuB,GACxB,MAAM,mBAAmB,CAAC;AAC3B,YAAY,EACV,SAAS,EACT,OAAO,EACP,YAAY,EACZ,wBAAwB,EACxB,WAAW,EACX,mBAAmB,EACnB,sBAAsB,EACtB,8BAA8B,GAC/B,MAAM,mBAAmB,CAAC;AAG3B,OAAO,EAAE,UAAU,EAAE,QAAQ,EAAE,eAAe,EAAE,UAAU,EAAE,SAAS,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AACxG,YAAY,EAAE,iBAAiB,EAAE,QAAQ,EAAE,cAAc,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAG9F,OAAO,EAAE,YAAY,EAAE,cAAc,EAAE,cAAc,EAAE,YAAY,EAAE,MAAM,sBAAsB,CAAC"}

package/dist/index.js

@@ -17,19 +17,20 @@ export { detectSymbolCycles, findConnectedComponents, clusterSymbols, buildCodeb
 export { walkFiles, detectLanguageForPath } from './discovery/walker.js';
 export { ImportResolver } from './resolution/resolver.js';
 export { installGitHooks } from './git/hooks.js';
+export { installAllMissing as installScipIndexers, SCIP_INSTALL_SPECS } from './scip/installer.js';
 export { TransformersJsProvider, LazyEmbeddingProvider, DEFAULT_EMBEDDING_MODEL, tokenAwareBatch, hashEmbeddingText, buildStructuralEmbeddingText } from './embeddings/embedder.js';
 // ── Resolution method taxonomy (shared constant) ─────────────────────────────
 export { RESOLUTION_METHODS, RESOLVED_METHODS, UNRESOLVED_METHODS } from './resolution/resolution-method.js';
 // ── Pipeline (composable indexing stages) ─────────────────────────────────────
 export { IndexPipeline } from './indexer/pipeline.js';
-export { ScipSourceStage, SourceIndexStage, DocsIndexStage, ImportResolutionStage, DependencyApiStage, ScipEnrichmentStage, LspEnrichmentStage, EmbeddingStage, } from './indexer/stages/index.js';
+export { ScipIndexerStage, SourceIndexStage, DocsIndexStage, ImportResolutionStage, DependencyApiStage, LspEnrichmentStage, EmbeddingStage, } from './indexer/stages/index.js';
 // ── Runtime ───────────────────────────────────────────────────────────────────
 export { LoreRuntime } from './runtime.js';
 // ── File watcher / poller ─────────────────────────────────────────────────────
 export { FileWatcher } from './discovery/watcher.js';
 export { FilePoller } from './discovery/poller.js';
 // ── MCP server ────────────────────────────────────────────────────────────────
-export { createLoreMcpServer, createLoreMcpServerAsync } from './server/server.js';
+export { createLoreMcpServer } from './server/server.js';
 export { registerTools } from './server/tool-registry.js';
 export { openReadOnly, getSymbolById, getSymbolsByName, listSymbols, getFileById, getFileByPath, listFiles, listResolvedEdges, listTypeRefs, listSymbolRelationships, } from './db/read-only.js';
 // ── Logging ───────────────────────────────────────────────────────────────────

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,iFAAiF;AACjF,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAClD,OAAO,EAAE,MAAM,EAAE,WAAW,EAAE,WAAW,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC;AAEpF,OAAO,EAAE,kBAAkB,EAAE,QAAQ,EAAE,YAAY,EAAE,MAAM,4BAA4B,CAAC;AACxF,OAAO,EACL,kBAAkB,EAClB,uBAAuB,EACvB,cAAc,EACd,oBAAoB,GACrB,MAAM,gCAAgC,CAAC;AAWxC,OAAO,EAAE,SAAS,EAAE,qBAAqB,EAAE,MAAM,uBAAuB,CAAC;AAEzE,OAAO,EAAE,cAAc,EAAE,MAAM,0BAA0B,CAAC;AAE1D,OAAO,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AAIjD,OAAO,EAAE,sBAAsB,EAAE,qBAAqB,EAAE,uBAAuB,EAAE,eAAe,EAAE,iBAAiB,EAAE,4BAA4B,EAAE,MAAM,0BAA0B,CAAC;AAUpL,gFAAgF;AAChF,OAAO,EAAE,kBAAkB,EAAE,gBAAgB,EAAE,kBAAkB,EAAE,MAAM,mCAAmC,CAAC;AAG7G,iFAAiF;AACjF,OAAO,EAAE,aAAa,EAAE,MAAM,uBAAuB,CAAC;AAEtD,OAAO,EACL,eAAe,EACf,gBAAgB,EAChB,cAAc,EACd,qBAAqB,EACrB,kBAAkB,EAClB,mBAAmB,EACnB,kBAAkB,EAClB,cAAc,GACf,MAAM,2BAA2B,CAAC;AAGnC,iFAAiF;AACjF,OAAO,EAAE,WAAW,EAAE,MAAM,cAAc,CAAC;AAG3C,iFAAiF;AACjF,OAAO,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAErD,OAAO,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AAGnD,iFAAiF;AACjF,OAAO,EAAE,mBAAmB,EAAE,wBAAwB,EAAE,MAAM,oBAAoB,CAAC;AAGnF,OAAO,EAAE,aAAa,EAAE,MAAM,2BAA2B,CAAC;AAE1D,OAAO,EACL,YAAY,EACZ,aAAa,EACb,gBAAgB,EAChB,WAAW,EACX,WAAW,EACX,aAAa,EACb,SAAS,EACT,iBAAiB,EACjB,YAAY,EACZ,uBAAuB,GACxB,MAAM,mBAAmB,CAAC;AAY3B,iFAAiF;AACjF,OAAO,EAAE,UAAU,EAAE,QAAQ,EAAE,eAAe,EAAE,UAAU,EAAE,SAAS,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAGxG,iFAAiF;AACjF,OAAO,EAAE,YAAY,EAAE,cAAc,EAAE,cAAc,EAAE,YAAY,EAAE,MAAM,sBAAsB,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,iFAAiF;AACjF,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAClD,OAAO,EAAE,MAAM,EAAE,WAAW,EAAE,WAAW,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC;AAEpF,OAAO,EAAE,kBAAkB,EAAE,QAAQ,EAAE,YAAY,EAAE,MAAM,4BAA4B,CAAC;AACxF,OAAO,EACL,kBAAkB,EAClB,uBAAuB,EACvB,cAAc,EACd,oBAAoB,GACrB,MAAM,gCAAgC,CAAC;AAWxC,OAAO,EAAE,SAAS,EAAE,qBAAqB,EAAE,MAAM,uBAAuB,CAAC;AAEzE,OAAO,EAAE,cAAc,EAAE,MAAM,0BAA0B,CAAC;AAE1D,OAAO,EAAE,eAAe,EAAE,MAAM,gBAAgB,CAAC;AAIjD,OAAO,EAAE,iBAAiB,IAAI,mBAAmB,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AAEnG,OAAO,EAAE,sBAAsB,EAAE,qBAAqB,EAAE,uBAAuB,EAAE,eAAe,EAAE,iBAAiB,EAAE,4BAA4B,EAAE,MAAM,0BAA0B,CAAC;AAUpL,gFAAgF;AAChF,OAAO,EAAE,kBAAkB,EAAE,gBAAgB,EAAE,kBAAkB,EAAE,MAAM,mCAAmC,CAAC;AAG7G,iFAAiF;AACjF,OAAO,EAAE,aAAa,EAAE,MAAM,uBAAuB,CAAC;AAEtD,OAAO,EACL,gBAAgB,EAChB,gBAAgB,EAChB,cAAc,EACd,qBAAqB,EACrB,kBAAkB,EAClB,kBAAkB,EAClB,cAAc,GACf,MAAM,2BAA2B,CAAC;AAGnC,iFAAiF;AACjF,OAAO,EAAE,WAAW,EAAE,MAAM,cAAc,CAAC;AAG3C,iFAAiF;AACjF,OAAO,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAErD,OAAO,EAAE,UAAU,EAAE,MAAM,uBAAuB,CAAC;AAGnD,iFAAiF;AACjF,OAAO,EAAE,mBAAmB,EAAE,MAAM,oBAAoB,CAAC;AAGzD,OAAO,EAAE,aAAa,EAAE,MAAM,2BAA2B,CAAC;AAG1D,OAAO,EACL,YAAY,EACZ,aAAa,EACb,gBAAgB,EAChB,WAAW,EACX,WAAW,EACX,aAAa,EACb,SAAS,EACT,iBAAiB,EACjB,YAAY,EACZ,uBAAuB,GACxB,MAAM,mBAAmB,CAAC;AAY3B,iFAAiF;AACjF,OAAO,EAAE,UAAU,EAAE,QAAQ,EAAE,eAAe,EAAE,UAAU,EAAE,SAAS,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAGxG,iFAAiF;AACjF,OAAO,EAAE,YAAY,EAAE,cAAc,EAAE,cAAc,EAAE,YAAY,EAAE,MAAM,sBAAsB,CAAC"}

package/dist/indexer/index.d.ts

@@ -7,13 +7,17 @@
  * For full builds, `build()` delegates entirely to the pipeline which
  * enforces the data-dependency chain:
  * ```
- * SourceIndexStage → DocsIndexStage → ImportResolutionStage
- *   → DependencyApiStage → ScipEnrichmentStage → LspEnrichmentStage
- *   → ResolutionStage → TestMapStage → HistoryStage → EmbeddingStage
+ * ScipIndexerStage → SourceIndexStage → DocsIndexStage
+ *   → ImportResolutionStage → DependencyApiStage
+ *   → LspEnrichmentStage → ResolutionStage → TestMapStage
+ *   → HistoryStage → EmbeddingStage
  * ```
  *
- * For incremental updates, `update()` uses stage-extracted helpers
- * while managing the changed-file diff itself.
+ * `ScipIndexerStage` now populates both structural data (symbols, refs)
+ * and enrichment metadata (type signatures, definition locations) in a
+ * single pass.  `SourceIndexStage` then adds tree-sitter metrics
+ * (complexity, nesting depth) to SCIP-sourced files and handles
+ * remaining languages.
  *
  * The enrichment → resolution ordering is **load-bearing** and enforced
  * structurally by the pipeline rather than by call-site discipline.
@@ -29,7 +33,6 @@ interface IndexBuilderOptions {
         all?: boolean;
     };
     embeddingModel?: string;
-    docsAutoNotes?: boolean;
     indexDependencies?: boolean;
     lsp?: EffectiveLspSettings;
     scip?: EffectiveScipSettings;
@@ -53,7 +56,6 @@ export declare class IndexBuilder {
     private readonly history;
     private readonly indexDependencies;
     private readonly embeddingModel;
-    private readonly docsAutoNotes;
     private readonly lspSettings;
     private readonly scipSettings;
     constructor(dbPath: string, walkerConfig: WalkerConfig, embedder?: EmbeddingProvider, embeddingModelOrOptions?: string | IndexBuilderOptions);
@@ -65,14 +67,21 @@ export declare class IndexBuilder {
      */
     build(): Promise<void>;
     /**
-     * Incrementally re-processes only the listed files and updates the DB.
+     * Incrementally re-processes only the listed files using the overlay layer.
      *
-     * Delegates to the same pipeline as `build()` — each stage handles
-     * `'update'` mode by operating only on the changed-file set.
+     * Tree-sitter is the primary indexer; LSP enriches cross-file refs.
+     * SCIP is never invoked during overlay updates.
      *
      * @param changedFiles  Absolute paths of files that have changed.
      */
     update(changedFiles: string[]): Promise<void>;
+    /**
+     * Perform a background baseline rebuild (SCIP reconciliation).
+     *
+     * Writes to a new generation, then atomically promotes and cleans
+     * stale overlay rows.  This is the only path that invokes SCIP.
+     */
+    baselineRebuild(): Promise<void>;
     /**
      * Writes an LLM-generated summary for a symbol to `symbol_summaries`.
      */

package/dist/indexer/index.d.ts.map

@@ -1 +1 @@
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package/dist/indexer/index.js

@@ -7,20 +7,24 @@
  * For full builds, `build()` delegates entirely to the pipeline which
  * enforces the data-dependency chain:
  * ```
- * SourceIndexStage → DocsIndexStage → ImportResolutionStage
- *   → DependencyApiStage → ScipEnrichmentStage → LspEnrichmentStage
- *   → ResolutionStage → TestMapStage → HistoryStage → EmbeddingStage
+ * ScipIndexerStage → SourceIndexStage → DocsIndexStage
+ *   → ImportResolutionStage → DependencyApiStage
+ *   → LspEnrichmentStage → ResolutionStage → TestMapStage
+ *   → HistoryStage → EmbeddingStage
  * ```
  *
- * For incremental updates, `update()` uses stage-extracted helpers
- * while managing the changed-file diff itself.
+ * `ScipIndexerStage` now populates both structural data (symbols, refs)
+ * and enrichment metadata (type signatures, definition locations) in a
+ * single pass.  `SourceIndexStage` then adds tree-sitter metrics
+ * (complexity, nesting depth) to SCIP-sourced files and handles
+ * remaining languages.
  *
  * The enrichment → resolution ordering is **load-bearing** and enforced
  * structurally by the pipeline rather than by call-site discipline.
  */
 import * as fs from 'node:fs';
 import { execFileSync } from 'node:child_process';
-import { openDb, setLoreMeta, LORE_META_LAST_HEAD_SHA, LORE_META_COVERAGE_LAST_SOURCE_PATH, LORE_META_COVERAGE_LAST_SOURCE_MTIME, } from '../db/schema.js';
+import { openDb, setLoreMeta, incrementGeneration, LORE_META_LAST_HEAD_SHA, LORE_META_GENERATION_PENDING, LORE_META_COVERAGE_LAST_SOURCE_PATH, LORE_META_COVERAGE_LAST_SOURCE_MTIME, } from '../db/schema.js';
 import { DEFAULT_EMBEDDING_MODEL } from '../embeddings/embedder.js';
 import { ingestCoverageReport } from '../testing/coverage.js';
 import { resolveSymbolEdges } from '../resolution/call-graph.js';
@@ -28,7 +32,7 @@ import { refreshTestMappings } from '../testing/test-mapper.js';
 import { ingestGitHistory } from '../git/history.js';
 import { getLogger } from '../logger.js';
 import { IndexPipeline } from './pipeline.js';
-import { ScipSourceStage, SourceIndexStage, DocsIndexStage, ImportResolutionStage, DependencyApiStage, LspEnrichmentStage, EmbeddingStage, } from './stages/index.js';
+import { ScipIndexerStage, SourceIndexStage, DocsIndexStage, ImportResolutionStage, DependencyApiStage, LspEnrichmentStage, EmbeddingStage, ReverseDepsStage, OverlayCleanupStage, } from './stages/index.js';
 // ─── IndexBuilder (façade) ────────────────────────────────────────────────────
 /**
  * Façade over the composable `IndexPipeline`.
@@ -49,7 +53,6 @@ export class IndexBuilder {
     history;
     indexDependencies;
     embeddingModel;
-    docsAutoNotes;
     lspSettings;
     scipSettings;
     constructor(dbPath, walkerConfig, embedder, embeddingModelOrOptions) {
@@ -67,7 +70,6 @@ export class IndexBuilder {
             this.embedder = null;
         }
         this.history = opts.history ?? false;
-        this.docsAutoNotes = opts.docsAutoNotes ?? true;
         this.indexDependencies = opts.indexDependencies ?? false;
         this.lspSettings = opts.lsp ?? null;
         this.scipSettings = opts.scip ?? null;
@@ -86,21 +88,29 @@ export class IndexBuilder {
         const branch = this.resolveBranch();
         log.indexing('build started', { dbPath: this.dbPath, branch, rootDir: this.walkerConfig.rootDir });
         // Build the pipeline with all stages in dependency order.
-        // ScipSourceStage runs first for SCIP-covered languages (symbols + refs
-        // from SCIP directly).  SourceIndexStage then handles remaining languages
-        // via tree-sitter.  LSP enrichment is optional for both paths.
+        // ScipIndexerStage runs first for SCIP-covered languages (symbols + refs
+        // from SCIP directly, with enrichment metadata populated inline).
+        // SourceIndexStage then adds tree-sitter metrics to SCIP files and
+        // handles remaining languages.  LSP enrichment is optional.
+        //
+        // Stages in arrays run concurrently:
+        //   - SourceIndexStage + DocsIndexStage: write to disjoint tables.
+        //   - HistoryStage + LspEnrichment: history writes to
+        //     commits/commit_files (disjoint from enrichment targets).
         const pipeline = new IndexPipeline([
-            new ScipSourceStage(),
-            new SourceIndexStage(),
-            new DocsIndexStage(),
+            new ScipIndexerStage(),
+            [new SourceIndexStage(), new DocsIndexStage()],
             new ImportResolutionStage(),
             new DependencyApiStage(),
-            new LspEnrichmentStage(),
+            [new LspEnrichmentStage(), historyStage()],
+            ftsRefreshStage(),
             resolutionStage(),
             testMapStage(),
-            historyStage(),
+            new ReverseDepsStage(),
             new EmbeddingStage(),
         ]);
+        // Baseline: set generation to 1 for initial build.
+        const generation = incrementGeneration(db);
         const context = {
             db,
             dbPath: this.dbPath,
@@ -113,10 +123,12 @@ export class IndexBuilder {
             files: [],
             indexDependencies: this.indexDependencies,
             history: this.history,
-            docsAutoNotes: this.docsAutoNotes,
             staleSymbolIds: [],
             changedSourcePaths: [],
             changedDocPaths: [],
+            sourceCache: new Map(),
+            layer: 'baseline',
+            generation,
         };
         try {
             await pipeline.run(context, 'build');
@@ -139,10 +151,10 @@ export class IndexBuilder {
         }
     }
     /**
-     * Incrementally re-processes only the listed files and updates the DB.
+     * Incrementally re-processes only the listed files using the overlay layer.
      *
-     * Delegates to the same pipeline as `build()` — each stage handles
-     * `'update'` mode by operating only on the changed-file set.
+     * Tree-sitter is the primary indexer; LSP enriches cross-file refs.
+     * SCIP is never invoked during overlay updates.
      *
      * @param changedFiles  Absolute paths of files that have changed.
      */
@@ -150,16 +162,18 @@ export class IndexBuilder {
         const db = openDb(this.dbPath);
         const branch = this.resolveBranch();
         const log = getLogger();
+        // Overlay pipeline: tree-sitter → imports → LSP → resolution → reverse-deps → embedding
+        // No SCIP stage — tree-sitter is the primary incremental indexer.
         const pipeline = new IndexPipeline([
-            new ScipSourceStage(),
-            new SourceIndexStage(),
-            new DocsIndexStage(),
+            new ScipIndexerStage(),
+            [new SourceIndexStage(), new DocsIndexStage()],
             new ImportResolutionStage(),
             new DependencyApiStage(),
-            new LspEnrichmentStage(),
+            [new LspEnrichmentStage(), historyStage()],
+            ftsRefreshStage(),
             resolutionStage(),
             testMapStage(),
-            historyStage(),
+            new ReverseDepsStage(),
             new EmbeddingStage(),
         ]);
         const context = {
@@ -174,11 +188,13 @@ export class IndexBuilder {
             files: [],
             indexDependencies: this.indexDependencies,
             history: this.history,
-            docsAutoNotes: this.docsAutoNotes,
             changedFiles,
             staleSymbolIds: [],
             changedSourcePaths: [],
             changedDocPaths: [],
+            sourceCache: new Map(),
+            layer: 'overlay',
+            generation: 0,
         };
         try {
             await pipeline.run(context, 'update');
@@ -188,6 +204,67 @@ export class IndexBuilder {
             db.close();
         }
     }
+    /**
+     * Perform a background baseline rebuild (SCIP reconciliation).
+     *
+     * Writes to a new generation, then atomically promotes and cleans
+     * stale overlay rows.  This is the only path that invokes SCIP.
+     */
+    async baselineRebuild() {
+        const log = getLogger();
+        const rebuildStart = performance.now();
+        const rebuildStartedAt = Math.floor(Date.now() / 1000);
+        const db = openDb(this.dbPath);
+        const branch = this.resolveBranch();
+        // Increment pending generation
+        const newGeneration = incrementGeneration(db);
+        setLoreMeta(db, LORE_META_GENERATION_PENDING, String(newGeneration));
+        log.indexing('baseline rebuild started', { generation: newGeneration });
+        const pipeline = new IndexPipeline([
+            new ScipIndexerStage(),
+            [new SourceIndexStage(), new DocsIndexStage()],
+            new ImportResolutionStage(),
+            new DependencyApiStage(),
+            [new LspEnrichmentStage(), historyStage()],
+            ftsRefreshStage(),
+            resolutionStage(),
+            testMapStage(),
+            new EmbeddingStage(),
+            new OverlayCleanupStage({
+                newGeneration,
+                rebuildStartedAt,
+                headSha: this.readGitValue(['rev-parse', 'HEAD']),
+            }),
+        ]);
+        const context = {
+            db,
+            dbPath: this.dbPath,
+            walkerConfig: this.walkerConfig,
+            branch,
+            lsp: this.lspSettings,
+            scip: this.scipSettings,
+            embedder: this.embedder,
+            log,
+            files: [],
+            indexDependencies: this.indexDependencies,
+            history: this.history,
+            staleSymbolIds: [],
+            changedSourcePaths: [],
+            changedDocPaths: [],
+            sourceCache: new Map(),
+            layer: 'baseline',
+            generation: newGeneration,
+        };
+        try {
+            await pipeline.run(context, 'build');
+            this.saveLastKnownHead(db);
+            const indexDurationMs = Math.round(performance.now() - rebuildStart);
+            log.indexing('baseline rebuild complete', { generation: newGeneration, durationMs: indexDurationMs });
+        }
+        finally {
+            db.close();
+        }
+    }
     /**
      * Writes an LLM-generated summary for a symbol to `symbol_summaries`.
      */
@@ -274,7 +351,9 @@ export class IndexBuilder {
 function resolutionStage() {
     return {
         name: 'symbol-resolution',
-        execute: async (ctx) => { resolveSymbolEdges(ctx.db); },
+        execute: async (ctx) => {
+            resolveSymbolEdges(ctx.db, { overlayOnly: ctx.layer === 'overlay' });
+        },
     };
 }
 /** Refresh test-to-source file mappings. */
@@ -284,6 +363,34 @@ function testMapStage() {
         execute: async (ctx) => { refreshTestMappings(ctx.db, ctx.branch); },
     };
 }
+/**
+ * Bulk-refresh the FTS5 index from the enriched `symbols` table.
+ *
+ * Replaces per-row FTS5 updates during enrichment with a single pass,
+ * which is substantially faster for FTS5 virtual tables.
+ */
+function ftsRefreshStage() {
+    return {
+        name: 'fts-refresh',
+        execute: async (ctx) => {
+            ctx.db.transaction(() => {
+                ctx.db.exec('DELETE FROM symbols_fts');
+                // Use effective_symbols view to index only the active layer's symbols
+                ctx.db.exec(`
+          INSERT INTO symbols_fts(rowid, name, signature, kind)
+          SELECT s.id,
+                 s.name,
+                 COALESCE(s.resolved_type_signature, '') || char(10) ||
+                 COALESCE(s.resolved_return_type, '')    || char(10) ||
+                 COALESCE(s.signature, '')                || char(10) ||
+                 s.name,
+                 s.kind
+          FROM effective_symbols s
+        `);
+            })();
+        },
+    };
+}
 /** Ingest git history. */
 function historyStage() {
     return {

package/dist/indexer/index.js.map

@@ -1 +1 @@
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