@jafreck/lore 0.3.5 → 0.3.7

package/dist/indexer/index.js

@@ -8,8 +8,8 @@
  * enforces the data-dependency chain:
  * ```
  * SourceIndexStage → DocsIndexStage → ImportResolutionStage
- *   → DependencyApiStage → LspEnrichmentStage → ResolutionStage
- *   → TestMapStage → HistoryStage → EmbeddingStage
+ *   → DependencyApiStage → ScipEnrichmentStage → LspEnrichmentStage
+ *   → ResolutionStage → TestMapStage → HistoryStage → EmbeddingStage
  * ```
  *
  * For incremental updates, `update()` uses stage-extracted helpers
@@ -20,15 +20,15 @@
  */
 import * as fs from 'node:fs';
 import { execFileSync } from 'node:child_process';
-import { openDb, setLoreMeta, LORE_META_LAST_HEAD_SHA, LORE_META_COVERAGE_LAST_SOURCE_PATH, LORE_META_COVERAGE_LAST_SOURCE_MTIME, } from './db.js';
-import { DEFAULT_EMBEDDING_MODEL } from './embedder.js';
-import { ingestCoverageReport } from './coverage.js';
-import { resolveSymbolEdges } from './call-graph.js';
-import { refreshTestMappings } from './test-mapper.js';
-import { ingestGitHistory } from './git-history.js';
+import { openDb, setLoreMeta, LORE_META_LAST_HEAD_SHA, LORE_META_COVERAGE_LAST_SOURCE_PATH, LORE_META_COVERAGE_LAST_SOURCE_MTIME, } from '../db/schema.js';
+import { DEFAULT_EMBEDDING_MODEL } from '../embeddings/embedder.js';
+import { ingestCoverageReport } from '../testing/coverage.js';
+import { resolveSymbolEdges } from '../resolution/call-graph.js';
+import { refreshTestMappings } from '../testing/test-mapper.js';
+import { ingestGitHistory } from '../git/history.js';
 import { getLogger } from '../logger.js';
 import { IndexPipeline } from './pipeline.js';
-import { SourceIndexStage, DocsIndexStage, ImportResolutionStage, DependencyApiStage, LspEnrichmentStage, EmbeddingStage, } from './stages/index.js';
+import { ScipSourceStage, SourceIndexStage, DocsIndexStage, ImportResolutionStage, DependencyApiStage, ScipEnrichmentStage, LspEnrichmentStage, EmbeddingStage, } from './stages/index.js';
 // ─── IndexBuilder (façade) ────────────────────────────────────────────────────
 /**
  * Façade over the composable `IndexPipeline`.
@@ -51,6 +51,7 @@ export class IndexBuilder {
     embeddingModel;
     docsAutoNotes;
     lspSettings;
+    scipSettings;
     constructor(dbPath, walkerConfig, embedder, embeddingModelOrOptions) {
         this.dbPath = dbPath;
         this.walkerConfig = walkerConfig;
@@ -69,6 +70,7 @@ export class IndexBuilder {
         this.docsAutoNotes = opts.docsAutoNotes ?? true;
         this.indexDependencies = opts.indexDependencies ?? false;
         this.lspSettings = opts.lsp ?? null;
+        this.scipSettings = opts.scip ?? null;
     }
     // ─── Public API ──────────────────────────────────────────────────────────
     /**
@@ -84,15 +86,23 @@ export class IndexBuilder {
         const branch = this.resolveBranch();
         log.indexing('build started', { dbPath: this.dbPath, branch, rootDir: this.walkerConfig.rootDir });
         // Build the pipeline with all stages in dependency order.
+        // ScipSourceStage runs first for SCIP-covered languages (symbols + refs
+        // from SCIP directly).  SourceIndexStage then handles remaining languages
+        // via tree-sitter.  LSP enrichment is optional for both paths.
+        //
+        // Stages in arrays run concurrently:
+        //   - SourceIndexStage + DocsIndexStage: write to disjoint tables.
+        //   - HistoryStage + ScipEnrichment + LspEnrichment: history writes to
+        //     commits/commit_files (disjoint from enrichment targets).
         const pipeline = new IndexPipeline([
-            new SourceIndexStage(),
-            new DocsIndexStage(),
+            new ScipSourceStage(),
+            [new SourceIndexStage(), new DocsIndexStage()],
             new ImportResolutionStage(),
             new DependencyApiStage(),
-            new LspEnrichmentStage(),
+            [new ScipEnrichmentStage(), new LspEnrichmentStage(), historyStage()],
+            ftsRefreshStage(),
             resolutionStage(),
             testMapStage(),
-            historyStage(),
             new EmbeddingStage(),
         ]);
         const context = {
@@ -101,6 +111,7 @@ export class IndexBuilder {
             walkerConfig: this.walkerConfig,
             branch,
             lsp: this.lspSettings,
+            scip: this.scipSettings,
             embedder: this.embedder,
             log,
             files: [],
@@ -110,6 +121,7 @@ export class IndexBuilder {
             staleSymbolIds: [],
             changedSourcePaths: [],
             changedDocPaths: [],
+            sourceCache: new Map(),
         };
         try {
             await pipeline.run(context, 'build');
@@ -144,14 +156,14 @@ export class IndexBuilder {
         const branch = this.resolveBranch();
         const log = getLogger();
         const pipeline = new IndexPipeline([
-            new SourceIndexStage(),
-            new DocsIndexStage(),
+            new ScipSourceStage(),
+            [new SourceIndexStage(), new DocsIndexStage()],
             new ImportResolutionStage(),
             new DependencyApiStage(),
-            new LspEnrichmentStage(),
+            [new ScipEnrichmentStage(), new LspEnrichmentStage(), historyStage()],
+            ftsRefreshStage(),
             resolutionStage(),
             testMapStage(),
-            historyStage(),
             new EmbeddingStage(),
         ]);
         const context = {
@@ -160,6 +172,7 @@ export class IndexBuilder {
             walkerConfig: this.walkerConfig,
             branch,
             lsp: this.lspSettings,
+            scip: this.scipSettings,
             embedder: this.embedder,
             log,
             files: [],
@@ -170,6 +183,7 @@ export class IndexBuilder {
             staleSymbolIds: [],
             changedSourcePaths: [],
             changedDocPaths: [],
+            sourceCache: new Map(),
         };
         try {
             await pipeline.run(context, 'update');
@@ -275,6 +289,33 @@ function testMapStage() {
         execute: async (ctx) => { refreshTestMappings(ctx.db, ctx.branch); },
     };
 }
+/**
+ * Bulk-refresh the FTS5 index from the enriched `symbols` table.
+ *
+ * Replaces per-row FTS5 updates during enrichment with a single pass,
+ * which is substantially faster for FTS5 virtual tables.
+ */
+function ftsRefreshStage() {
+    return {
+        name: 'fts-refresh',
+        execute: async (ctx) => {
+            ctx.db.transaction(() => {
+                ctx.db.exec('DELETE FROM symbols_fts');
+                ctx.db.exec(`
+          INSERT INTO symbols_fts(rowid, name, signature, kind)
+          SELECT s.id,
+                 s.name,
+                 COALESCE(s.resolved_type_signature, '') || char(10) ||
+                 COALESCE(s.resolved_return_type, '')    || char(10) ||
+                 COALESCE(s.signature, '')                || char(10) ||
+                 s.name,
+                 s.kind
+          FROM symbols s
+        `);
+            })();
+        },
+    };
+}
 /** Ingest git history. */
 function historyStage() {
     return {

package/dist/indexer/index.js.map

@@ -1 +1 @@
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package/dist/indexer/pipeline.d.ts

@@ -7,20 +7,27 @@
  * ## Stage ordering (data-dependency chain)
  *
  * ```
- * SourceIndexStage → DocsIndexStage → ImportResolutionStage
- *   → DependencyApiStage → LspEnrichmentStage → ResolutionStage
+ * ScipSourceStage → SourceIndexStage → DocsIndexStage
+ *   → ImportResolutionStage → DependencyApiStage
+ *   → LspEnrichmentStage → ResolutionStage
  *   → TestMapStage → HistoryStage → EmbeddingStage
  * ```
  *
- * The enrichment → resolution ordering is **load-bearing**:
- * `resolveSymbolEdges` reads `definition_path` / `definition_line` columns that
- * are only populated during the LSP enrichment stage.  Running resolution before
- * enrichment yields only name-based fallback results.
+ * `ScipSourceStage` runs first for SCIP-covered languages, populating
+ * symbols AND refs directly with pre-resolved edges.  `SourceIndexStage`
+ * then handles remaining languages via tree-sitter.
+ *
+ * LSP enrichment is optional for both paths (adds type signatures to
+ * SCIP-sourced symbols, enriches non-SCIP refs with definition data).
+ *
+ * The resolution stage only processes refs that are still `unresolved`
+ * (i.e. non-SCIP languages without LSP enrichment).
  */
-import type { Database } from './db.js';
-import type { WalkerConfig } from './walker.js';
-import type { EmbeddingProvider } from './embedder.js';
-import type { EffectiveLspSettings } from './lsp/config.js';
+import type { Database } from '../db/schema.js';
+import type { WalkerConfig } from '../discovery/walker.js';
+import type { EmbeddingProvider } from '../embeddings/embedder.js';
+import type { EffectiveLspSettings } from '../lsp/config.js';
+import type { EffectiveScipSettings } from '../scip/config.js';
 import type { LoreLogger } from '../logger.js';
 /**
  * Shared context bag that flows through every stage.
@@ -37,6 +44,8 @@ export interface PipelineContext {
     branch: string;
     /** Effective LSP settings (null = disabled). */
     lsp: EffectiveLspSettings | null;
+    /** Effective SCIP settings (null = disabled). */
+    scip: EffectiveScipSettings | null;
     /** Optional embedding provider. */
     embedder: EmbeddingProvider | null;
     /** Logger instance. */
@@ -80,6 +89,30 @@ export interface PipelineContext {
      * embedding.  Accumulated by DocsIndexStage in update mode.
      */
     changedDocPaths: string[];
+    /**
+     * Languages for which SCIP enrichment already provided data.
+     * Set by `ScipEnrichmentStage`; read by `LspEnrichmentStage` to skip
+     * languages that don't need LSP fallback.
+     */
+    scipCoveredLanguages?: ReadonlySet<string>;
+    /**
+     * Languages fully sourced from SCIP (symbols + refs).
+     * Set by `ScipSourceStage`; read by `SourceIndexStage` to skip
+     * tree-sitter extraction for these languages, and by `LspEnrichmentStage`.
+     */
+    scipSourcedLanguages?: ReadonlySet<string>;
+    /**
+     * Absolute file paths sourced from SCIP.
+     * Set by `ScipSourceStage`; read by `SourceIndexStage` to skip files.
+     */
+    scipSourcedFiles?: ReadonlySet<string>;
+    /**
+     * In-memory cache of source file contents (path → source text).
+     * Populated by SourceIndexStage / ScipSourceStage during parsing.
+     * Later stages (SCIP enrichment, LSP enrichment) read from here to
+     * avoid redundant `readFileSync` calls.
+     */
+    sourceCache: Map<string, string>;
 }
 /**
  * A composable pipeline stage.
@@ -104,30 +137,35 @@ export interface PipelineStage {
     dispose?(): Promise<void>;
 }
 /**
- * Orchestrates a sequence of `PipelineStage` instances through a shared
+ * A pipeline entry is either a single stage or an array of stages to run
+ * concurrently.  Parallel stages must be independent (write to disjoint
+ * tables, read disjoint inputs).
+ */
+export type PipelineEntry = PipelineStage | PipelineStage[];
+/**
+ * Orchestrates a sequence of `PipelineEntry` instances through a shared
  * `PipelineContext`.
  *
- * Replaces the god-method `IndexBuilder.build()` with a declarative,
- * composable pipeline whose ordering is enforced structurally.
+ * Each entry is either a single stage or an array of stages that run
+ * concurrently.  Entries are executed in order; within a parallel group
+ * all stages start simultaneously and the group completes when all finish.
  *
  * @example
  * ```ts
  * const pipeline = new IndexPipeline([
- *   new SourceIndexStage(),
- *   new DocsIndexStage(),
+ *   new ScipSourceStage(),
+ *   [new SourceIndexStage(), new DocsIndexStage()],  // run in parallel
  *   new ImportResolutionStage(),
- *   new LspEnrichmentStage(),
- *   new ResolutionStage(),
  *   new EmbeddingStage(),
  * ]);
  * await pipeline.run(context, 'build');
  * ```
  */
 export declare class IndexPipeline {
-    private readonly stages;
-    constructor(stages: PipelineStage[]);
+    private readonly entries;
+    constructor(entries: PipelineEntry[]);
     /**
-     * Execute all stages in order.  If any stage throws, the remaining stages
+     * Execute all entries in order.  If any stage throws, the remaining entries
      * are skipped but every stage's `dispose()` hook is still called.
      */
     run(context: PipelineContext, mode: 'build' | 'update'): Promise<void>;

package/dist/indexer/pipeline.d.ts.map

@@ -1 +1 @@
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package/dist/indexer/pipeline.js

@@ -7,62 +7,88 @@
  * ## Stage ordering (data-dependency chain)
  *
  * ```
- * SourceIndexStage → DocsIndexStage → ImportResolutionStage
- *   → DependencyApiStage → LspEnrichmentStage → ResolutionStage
+ * ScipSourceStage → SourceIndexStage → DocsIndexStage
+ *   → ImportResolutionStage → DependencyApiStage
+ *   → LspEnrichmentStage → ResolutionStage
  *   → TestMapStage → HistoryStage → EmbeddingStage
  * ```
  *
- * The enrichment → resolution ordering is **load-bearing**:
- * `resolveSymbolEdges` reads `definition_path` / `definition_line` columns that
- * are only populated during the LSP enrichment stage.  Running resolution before
- * enrichment yields only name-based fallback results.
+ * `ScipSourceStage` runs first for SCIP-covered languages, populating
+ * symbols AND refs directly with pre-resolved edges.  `SourceIndexStage`
+ * then handles remaining languages via tree-sitter.
+ *
+ * LSP enrichment is optional for both paths (adds type signatures to
+ * SCIP-sourced symbols, enriches non-SCIP refs with definition data).
+ *
+ * The resolution stage only processes refs that are still `unresolved`
+ * (i.e. non-SCIP languages without LSP enrichment).
  */
 import { getLogger } from '../logger.js';
 // ─── IndexPipeline ────────────────────────────────────────────────────────────
 /**
- * Orchestrates a sequence of `PipelineStage` instances through a shared
+ * Orchestrates a sequence of `PipelineEntry` instances through a shared
  * `PipelineContext`.
  *
- * Replaces the god-method `IndexBuilder.build()` with a declarative,
- * composable pipeline whose ordering is enforced structurally.
+ * Each entry is either a single stage or an array of stages that run
+ * concurrently.  Entries are executed in order; within a parallel group
+ * all stages start simultaneously and the group completes when all finish.
  *
  * @example
  * ```ts
  * const pipeline = new IndexPipeline([
- *   new SourceIndexStage(),
- *   new DocsIndexStage(),
+ *   new ScipSourceStage(),
+ *   [new SourceIndexStage(), new DocsIndexStage()],  // run in parallel
  *   new ImportResolutionStage(),
- *   new LspEnrichmentStage(),
- *   new ResolutionStage(),
  *   new EmbeddingStage(),
  * ]);
  * await pipeline.run(context, 'build');
  * ```
  */
 export class IndexPipeline {
-    stages;
-    constructor(stages) {
-        this.stages = stages;
+    entries;
+    constructor(entries) {
+        this.entries = entries;
     }
     /**
-     * Execute all stages in order.  If any stage throws, the remaining stages
+     * Execute all entries in order.  If any stage throws, the remaining entries
      * are skipped but every stage's `dispose()` hook is still called.
      */
     async run(context, mode) {
         const log = context.log ?? getLogger();
         const startMs = performance.now();
         try {
-            for (const stage of this.stages) {
-                const stageStart = performance.now();
-                log.indexing(`stage:${stage.name} started`);
-                await stage.execute(context, mode);
-                const durationMs = Math.round(performance.now() - stageStart);
-                log.indexing(`stage:${stage.name} complete`, { durationMs });
+            for (const entry of this.entries) {
+                const stages = Array.isArray(entry) ? entry : [entry];
+                if (stages.length === 1) {
+                    // Single stage — run directly.
+                    const stage = stages[0];
+                    const stageStart = performance.now();
+                    log.indexing(`stage:${stage.name} started`);
+                    await stage.execute(context, mode);
+                    const durationMs = Math.round(performance.now() - stageStart);
+                    log.indexing(`stage:${stage.name} complete`, { durationMs });
+                }
+                else {
+                    // Parallel group — run all concurrently.
+                    const groupNames = stages.map(s => s.name).join(', ');
+                    log.indexing(`stage-group started: [${groupNames}]`);
+                    const groupStart = performance.now();
+                    await Promise.all(stages.map(async (stage) => {
+                        const stageStart = performance.now();
+                        log.indexing(`stage:${stage.name} started`);
+                        await stage.execute(context, mode);
+                        const durationMs = Math.round(performance.now() - stageStart);
+                        log.indexing(`stage:${stage.name} complete`, { durationMs });
+                    }));
+                    const groupMs = Math.round(performance.now() - groupStart);
+                    log.indexing(`stage-group complete: [${groupNames}]`, { durationMs: groupMs });
+                }
             }
         }
         finally {
             // Always clean up, even on failure.
-            for (const stage of this.stages) {
+            const allStages = this.entries.flatMap(e => Array.isArray(e) ? e : [e]);
+            for (const stage of allStages) {
                 if (stage.dispose) {
                     try {
                         await stage.dispose();
@@ -73,12 +99,13 @@ export class IndexPipeline {
                 }
             }
             const totalMs = Math.round(performance.now() - startMs);
-            log.indexing('pipeline complete', { mode, totalStages: this.stages.length, durationMs: totalMs });
+            const stageCount = this.entries.flatMap(e => Array.isArray(e) ? e : [e]).length;
+            log.indexing('pipeline complete', { mode, totalStages: stageCount, durationMs: totalMs });
         }
     }
     /** Returns the ordered list of stage names (useful for introspection / tests). */
     get stageNames() {
-        return this.stages.map(s => s.name);
+        return this.entries.flatMap(e => Array.isArray(e) ? e.map(s => s.name) : [e.name]);
     }
 }
 //# sourceMappingURL=pipeline.js.map

package/dist/indexer/pipeline.js.map

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package/dist/indexer/stages/dependency-api.js

@@ -6,10 +6,10 @@
  */
 import * as fs from 'node:fs';
 import * as path from 'node:path';
-import { ParserPool } from '../parser.js';
-import { LspEnrichmentCoordinator } from '../lsp/enrichment.js';
-import { isPublicDeclarationSurfaceSymbol, } from '../extractors/types.js';
-import { TypeScriptExtractor } from '../extractors/typescript.js';
+import { ParserPool } from '../../parsing/parser.js';
+import { LspEnrichmentCoordinator } from '../../lsp/enrichment.js';
+import { isPublicDeclarationSurfaceSymbol, } from '../../parsing/extractors/types.js';
+import { TypeScriptExtractor } from '../../parsing/extractors/typescript.js';
 // ─── Stage ────────────────────────────────────────────────────────────────────
 /**
  * Index exported declarations from direct npm dependencies (.d.ts files).

package/dist/indexer/stages/dependency-api.js.map

@@ -1 +1 @@
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package/dist/indexer/stages/docs-index.d.ts

@@ -5,8 +5,8 @@
  * the database, and optionally seed notes from documentation content.
  */
 import type { PipelineContext, PipelineStage } from '../pipeline.js';
-import type { Database } from '../db.js';
-import type { DocumentationFile } from '../docs.js';
+import type { Database } from '../../db/schema.js';
+import type { DocumentationFile } from '../../docs/docs.js';
 /**
  * Walk documentation files, chunk by headings, and persist to the database.
  * Optionally seeds notes from documentation content.

package/dist/indexer/stages/docs-index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"docs-index.d.ts","sourceRoot":"","sources":["../../../src/indexer/stages/docs-index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,OAAO,KAAK,EAAE,eAAe,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AACrE,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,UAAU,CAAC;AAEzC,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAiBpD;;;GAGG;AACH,qBAAa,cAAe,YAAW,aAAa;IAClD,QAAQ,CAAC,IAAI,gBAAgB;IAEvB,OAAO,CAAC,OAAO,EAAE,eAAe,EAAE,IAAI,EAAE,OAAO,GAAG,QAAQ,GAAG,OAAO,CAAC,IAAI,CAAC;CAsCjF;AAID,wBAAgB,wBAAwB,CACtC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,GAAG,EAAE,iBAAiB,EACtB,MAAM,EAAE,MAAM,GACb,IAAI,CAsEN;AAED,wBAAgB,6BAA6B,CAC3C,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,GAAG,EAAE,iBAAiB,EACtB,MAAM,EAAE,MAAM,GACb,IAAI,CAsBN"}
+{"version":3,"file":"docs-index.d.ts","sourceRoot":"","sources":["../../../src/indexer/stages/docs-index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,OAAO,KAAK,EAAE,eAAe,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AACrE,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAEnD,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAC;AAiB5D;;;GAGG;AACH,qBAAa,cAAe,YAAW,aAAa;IAClD,QAAQ,CAAC,IAAI,gBAAgB;IAEvB,OAAO,CAAC,OAAO,EAAE,eAAe,EAAE,IAAI,EAAE,OAAO,GAAG,QAAQ,GAAG,OAAO,CAAC,IAAI,CAAC;CAsCjF;AAID,wBAAgB,wBAAwB,CACtC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,GAAG,EAAE,iBAAiB,EACtB,MAAM,EAAE,MAAM,GACb,IAAI,CAsEN;AAED,wBAAgB,6BAA6B,CAC3C,EAAE,EAAE,QAAQ,CAAC,QAAQ,EACrB,GAAG,EAAE,iBAAiB,EACtB,MAAM,EAAE,MAAM,GACb,IAAI,CAsBN"}

package/dist/indexer/stages/docs-index.js

@@ -4,8 +4,8 @@
  * Pipeline stage: walk documentation files, chunk by headings, insert into
  * the database, and optionally seed notes from documentation content.
  */
-import { walkDocumentationFiles } from '../walker.js';
-import { inferSeededDocNoteKey, buildDocNoteScope } from '../docs.js';
+import { walkDocumentationFiles } from '../../discovery/walker.js';
+import { inferSeededDocNoteKey, buildDocNoteScope } from '../../docs/docs.js';
 // ─── Stage ────────────────────────────────────────────────────────────────────
 /**
  * Walk documentation files, chunk by headings, and persist to the database.

package/dist/indexer/stages/docs-index.js.map

@@ -1 +1 @@
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package/dist/indexer/stages/embedding.js

@@ -13,8 +13,8 @@
  *   - **Double-buffered I/O**: the next `embed()` call fires while the
  *     current batch's vectors are written to SQLite.
  */
-import { setLoreMeta, createVec0Tables } from '../db.js';
-import { buildStructuralEmbeddingText, hashEmbeddingText, tokenAwareBatch } from '../embedder.js';
+import { setLoreMeta, createVec0Tables } from '../../db/schema.js';
+import { buildStructuralEmbeddingText, hashEmbeddingText, tokenAwareBatch } from '../../embeddings/embedder.js';
 /**
  * Embed symbol signatures, documentation sections, and commit messages.
  *