@jafreck/lore 0.1.0 → 0.2.1

package/dist/cli.js

@@ -16,16 +16,17 @@
  *                         Ingest a coverage report file into the knowledge base.
  */
 import * as fs from 'node:fs';
+import { loadLspSettingsFromLoreConfig, resolveEffectiveLspSettings, } from './indexer/lsp/config.js';
 // ─── Argument helpers ─────────────────────────────────────────────────────────
 function usage() {
     console.error(`Usage:
-  lore index --root <dir> --db <path> [--embedding-model <id>] [--history] [--history-depth <n>] [--history-all]
+  lore index --root <dir> --db <path> [--embedding-model <id>] [--index-deps] [--history] [--history-depth <n>] [--history-all]
                          Index a codebase into a knowledge-base SQLite file
   lore mcp --db <path>                          Start the KB MCP server (stdio transport)
-  lore refresh --db <path> --root <dir> [--history] [--history-depth <n>] [--history-all]  Run an incremental index update and exit
+  lore refresh --db <path> --root <dir> [--index-deps] [--history] [--history-depth <n>] [--history-all]  Run an incremental index update and exit
   lore refresh --db <path> --root <dir> --watch Watch for file changes and refresh automatically
   lore refresh --db <path> --root <dir> --poll  Poll for file changes and refresh automatically
-  lore hooks --db <path> --root <dir> [--history] [--history-depth <n>] [--history-all]
+  lore hooks --db <path> --root <dir> [--history] [--history-depth <n>] [--history-all] [--lsp] [--no-lsp]
                          Install git hooks for automatic refresh on commit/merge/checkout
   lore ingest-coverage --db <path> --root <dir> --file <path> --format <lcov|cobertura> [--commit <sha>]
                          Ingest an explicit coverage report file into the knowledge base
@@ -34,14 +35,22 @@ Options:
   --root <dir>             Root directory to index (required for index, refresh)
   --db <path>              Path to a Lore knowledge-base SQLite file (required for index, mcp, refresh)
   --embedding-model <id>   Embedding model identifier (default: Qwen/Qwen3-Embedding-4B)
+  --index-deps             Enable dependency API indexing (disabled by default)
   --history                Enable git history ingestion
   --history-depth <n>      Limit commit ingestion to the most recent N commits
   --history-all            Traverse all refs (branches/tags) for history ingestion
   --include <glob>         Glob pattern for files to include (repeatable)
   --exclude <glob>         Glob pattern for paths to exclude (repeatable)
   --language <lang>        Language name to filter by, e.g. typescript (repeatable)
+  --docs-include <glob>    Glob pattern for docs to include (repeatable)
+  --docs-exclude <glob>    Glob pattern for docs to exclude (repeatable)
+  --docs-extension <ext>   Documentation extension to include, e.g. .md (repeatable)
+  --docs-auto-notes        Enable doc-based note seeding during indexing (default)
+  --no-docs-auto-notes     Disable doc-based note seeding during indexing
   --watch                  Enable fs-event watch mode (low-latency, may miss events on some platforms)
   --poll                   Enable polling mode (reliable but higher CPU/IO cost)
+  --lsp                    Force-enable index-time LSP settings
+  --no-lsp                 Force-disable index-time LSP settings
   --file <path>            Coverage report path (required for ingest-coverage)
   --format <name>          Coverage format: lcov or cobertura (required for ingest-coverage)
   --commit <sha>           Commit SHA to associate with coverage ingestion (default: HEAD)
@@ -63,6 +72,31 @@ function flags(args, name) {
     }
     return results;
 }
+function docsAutoNotesFlag(args) {
+    const enable = args.includes('--docs-auto-notes');
+    const disable = args.includes('--no-docs-auto-notes');
+    if (enable && disable) {
+        console.error('Error: --docs-auto-notes and --no-docs-auto-notes cannot be used together.\n');
+        usage();
+    }
+    if (enable)
+        return true;
+    if (disable)
+        return false;
+    return true;
+}
+function explicitLspEnabled(args) {
+    const enabled = args.includes('--lsp');
+    const disabled = args.includes('--no-lsp');
+    if (enabled && disabled) {
+        throw new Error('cannot combine --lsp and --no-lsp');
+    }
+    if (enabled)
+        return true;
+    if (disabled)
+        return false;
+    return undefined;
+}
 // ─── Main ─────────────────────────────────────────────────────────────────────
 async function main() {
     const args = process.argv.slice(2);
@@ -85,6 +119,7 @@ async function main() {
             return;
         }
         const embeddingModel = flag(args, '--embedding-model');
+        const indexDependencies = args.includes('--index-deps');
         const historyEnabled = args.includes('--history');
         const historyAll = args.includes('--history-all');
         const historyDepthRaw = flag(args, '--history-depth');
@@ -98,9 +133,34 @@ async function main() {
             }
             historyDepth = Math.floor(parsed);
         }
+        let lspEnabled;
+        try {
+            lspEnabled = explicitLspEnabled(args);
+        }
+        catch (error) {
+            const message = error instanceof Error ? error.message : String(error);
+            console.error(`Error: ${message}.\n`);
+            usage();
+            return;
+        }
+        let lspSettings;
+        try {
+            const lspConfig = loadLspSettingsFromLoreConfig(rootDir);
+            lspSettings = resolveEffectiveLspSettings(lspConfig, { ...(lspEnabled !== undefined && { enabled: lspEnabled }) });
+        }
+        catch (error) {
+            const message = error instanceof Error ? error.message : String(error);
+            console.error(`Error: ${message}\n`);
+            process.exit(1);
+            return;
+        }
         const includeGlobs = flags(args, '--include');
         const excludeGlobs = flags(args, '--exclude');
         const languageNames = flags(args, '--language');
+        const docsIncludeGlobs = flags(args, '--docs-include');
+        const docsExcludeGlobs = flags(args, '--docs-exclude');
+        const docsExtensions = flags(args, '--docs-extension');
+        const docsAutoNotes = docsAutoNotesFlag(args);
         // Static reverse map: language name → extensions (mirrors EXT_TO_LANG in walker.ts)
         const LANG_TO_EXTS = {
             c: ['.c', '.h'],
@@ -145,6 +205,9 @@ async function main() {
         const { IndexBuilder } = await import('./indexer/index.js');
         const shouldEnableHistory = historyEnabled || historyAll || historyDepth !== undefined;
         const options = {
+            docsAutoNotes,
+            indexDependencies,
+            lsp: lspSettings,
             ...(embeddingModel && { embeddingModel }),
             ...(shouldEnableHistory && {
                 history: {
@@ -158,7 +221,10 @@ async function main() {
             ...(includeGlobs.length > 0 && { includeGlobs }),
             ...(excludeGlobs.length > 0 && { excludeGlobs }),
             ...(extensions && { extensions }),
-        }, undefined, Object.keys(options).length > 0 ? options : undefined);
+            ...(docsIncludeGlobs.length > 0 && { docsIncludeGlobs }),
+            ...(docsExcludeGlobs.length > 0 && { docsExcludeGlobs }),
+            ...(docsExtensions.length > 0 && { docsExtensions }),
+        }, undefined, options);
         await builder.build();
     }
     else if (subcommand === 'mcp') {
@@ -211,6 +277,7 @@ async function main() {
         }
         const watchMode = args.includes('--watch');
         const pollMode = args.includes('--poll');
+        const indexDependencies = args.includes('--index-deps');
         const historyEnabled = args.includes('--history');
         const historyAll = args.includes('--history-all');
         const historyDepthRaw = flag(args, '--history-depth');
@@ -224,6 +291,27 @@ async function main() {
             }
             historyDepth = Math.floor(parsed);
         }
+        let lspEnabled;
+        try {
+            lspEnabled = explicitLspEnabled(args);
+        }
+        catch (error) {
+            const message = error instanceof Error ? error.message : String(error);
+            console.error(`Error: ${message}.\n`);
+            usage();
+            return;
+        }
+        let lspSettings;
+        try {
+            const lspConfig = loadLspSettingsFromLoreConfig(rootDir);
+            lspSettings = resolveEffectiveLspSettings(lspConfig, { ...(lspEnabled !== undefined && { enabled: lspEnabled }) });
+        }
+        catch (error) {
+            const message = error instanceof Error ? error.message : String(error);
+            console.error(`Error: ${message}\n`);
+            process.exit(1);
+            return;
+        }
         const shouldEnableHistory = historyEnabled || historyAll || historyDepth !== undefined;
         const historyOption = shouldEnableHistory
             ? {
@@ -231,12 +319,24 @@ async function main() {
                 ...(historyAll && { all: true }),
             }
             : false;
-        const walkerConfig = { rootDir };
+        const docsIncludeGlobs = flags(args, '--docs-include');
+        const docsExcludeGlobs = flags(args, '--docs-exclude');
+        const docsExtensions = flags(args, '--docs-extension');
+        const docsAutoNotes = docsAutoNotesFlag(args);
+        const walkerConfig = {
+            rootDir,
+            ...(docsIncludeGlobs.length > 0 && { docsIncludeGlobs }),
+            ...(docsExcludeGlobs.length > 0 && { docsExcludeGlobs }),
+            ...(docsExtensions.length > 0 && { docsExtensions }),
+        };
+        const refreshOptions = {
+            indexDependencies,
+            lsp: lspSettings,
+            ...(shouldEnableHistory && { history: historyOption }),
+        };
         if (watchMode) {
             const { FileWatcher } = await import('./indexer/watcher.js');
-            const watcher = new FileWatcher(dbPath, walkerConfig, {
-                history: historyOption,
-            });
+            const watcher = new FileWatcher(dbPath, walkerConfig, refreshOptions);
             watcher.start();
             process.stderr.write(JSON.stringify({ level: 'info', source: 'cli', message: 'watch mode started', rootDir }) + '\n');
             // Keep the process alive until interrupted
@@ -245,9 +345,7 @@ async function main() {
         }
         else if (pollMode) {
             const { FilePoller } = await import('./indexer/poller.js');
-            const poller = new FilePoller(dbPath, walkerConfig, {
-                history: historyOption,
-            });
+            const poller = new FilePoller(dbPath, walkerConfig, refreshOptions);
             poller.start();
             process.stderr.write(JSON.stringify({ level: 'info', source: 'cli', message: 'poll mode started', rootDir }) + '\n');
             // Keep the process alive until interrupted
@@ -258,7 +356,8 @@ async function main() {
             // Manual refresh: full build if DB doesn't exist yet, otherwise incremental update
             const { IndexBuilder } = await import('./indexer/index.js');
             const builder = new IndexBuilder(dbPath, walkerConfig, undefined, {
-                ...(shouldEnableHistory && { history: historyOption }),
+                ...refreshOptions,
+                docsAutoNotes,
             });
             const dbExists = fs.existsSync(dbPath);
             if (dbExists) {
@@ -297,12 +396,34 @@ async function main() {
         const historyAll = args.includes('--history-all');
         const historyDepthRaw = flag(args, '--history-depth');
         const includeHistory = historyEnabled || historyAll || historyDepthRaw !== undefined;
+        let lspEnabled;
+        try {
+            lspEnabled = explicitLspEnabled(args);
+        }
+        catch (error) {
+            const message = error instanceof Error ? error.message : String(error);
+            console.error(`Error: ${message}.\n`);
+            usage();
+            return;
+        }
+        let lspSettings;
+        try {
+            const lspConfig = loadLspSettingsFromLoreConfig(rootDir);
+            lspSettings = resolveEffectiveLspSettings(lspConfig, { ...(lspEnabled !== undefined && { enabled: lspEnabled }) });
+        }
+        catch (error) {
+            const message = error instanceof Error ? error.message : String(error);
+            console.error(`Error: ${message}\n`);
+            process.exit(1);
+            return;
+        }
         const { installGitHooks } = await import('./indexer/git-hooks.js');
         const result = installGitHooks({
             repoRoot: rootDir,
             rootDir,
             dbPath,
             includeHistory,
+            lspEnabled: lspSettings.enabled,
         });
         process.stderr.write(JSON.stringify({
             level: 'info',

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package/dist/index.d.ts

@@ -9,6 +9,7 @@ export { ParserPool } from './indexer/parser.js';
 export { ensurePythonDeps } from './indexer/ensure-python-deps.js';
 export { installGitHooks } from './indexer/git-hooks.js';
 export type { InstallGitHooksOptions } from './indexer/git-hooks.js';
+export type { EffectiveLspSettings, LspSettingsOverrides } from './indexer/lsp/config.js';
 export { SentenceTransformersProvider, Qwen3EmbeddingProvider, DEFAULT_EMBEDDING_MODEL } from './indexer/embedder.js';
 export type { EmbeddingProvider } from './indexer/embedder.js';
 export type { ExtractionResult, RawCallRef, RawImport, RawSymbol, SymbolExtractor, } from './indexer/extractors/types.js';
@@ -17,6 +18,8 @@ export type { WatcherOptions } from './indexer/watcher.js';
 export { FilePoller } from './indexer/poller.js';
 export type { PollerOptions } from './indexer/poller.js';
 export { createKbMcpServer } from './kb-server/server.js';
+export type { KbServerOptions } from './kb-server/server.js';
+export type { SearchObservation, SearchObserver } from './kb-server/tools/search.js';
 export { openReadOnly, getSymbolById, getSymbolsByName, listSymbols, getFileById, getFileByPath, listFiles, } from './kb-server/db.js';
 export type { SymbolRow, FileRow } from './kb-server/db.js';
 //# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -1 +1 @@
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package/dist/index.js.map

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package/dist/indexer/db.d.ts.map

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package/dist/indexer/db.js

@@ -32,7 +32,11 @@ CREATE TABLE IF NOT EXISTS symbols (
   start_line  INTEGER NOT NULL,
   end_line    INTEGER NOT NULL,
   signature   TEXT,
-  doc_comment TEXT
+  doc_comment TEXT,
+  resolved_type_signature TEXT,
+  resolved_return_type TEXT,
+  definition_uri TEXT,
+  definition_path TEXT
 );
 
 -- File-linked annotations extracted from comments (e.g. TODO/FIXME/NOTE).
@@ -69,7 +73,11 @@ CREATE TABLE IF NOT EXISTS symbol_refs (
   caller_id   INTEGER NOT NULL REFERENCES symbols(id) ON DELETE CASCADE,
   callee_id   INTEGER REFERENCES symbols(id),
   callee_name TEXT    NOT NULL,
-  call_line   INTEGER NOT NULL
+  call_line   INTEGER NOT NULL,
+  resolved_type_signature TEXT,
+  resolved_return_type TEXT,
+  definition_uri TEXT,
+  definition_path TEXT
 );
 
 -- External (third-party / stdlib) dependencies inferred from imports.
@@ -81,6 +89,25 @@ CREATE TABLE IF NOT EXISTS external_deps (
   UNIQUE(file_id, package)
 );
 
+-- Symbols extracted from direct dependency declarations and public API surfaces.
+CREATE TABLE IF NOT EXISTS external_symbols (
+  id                   INTEGER PRIMARY KEY AUTOINCREMENT,
+  dependency_ecosystem TEXT    NOT NULL DEFAULT 'npm',
+  source_type          TEXT    NOT NULL DEFAULT 'declaration',
+  source_ref           TEXT    NOT NULL DEFAULT '',
+  package_name         TEXT    NOT NULL,
+  package_version      TEXT,
+  symbol_name          TEXT    NOT NULL,
+  symbol_kind          TEXT    NOT NULL,
+  signature            TEXT    NOT NULL DEFAULT '',
+  doc_comment          TEXT,
+  resolved_type_signature TEXT,
+  resolved_return_type TEXT,
+  definition_uri       TEXT,
+  definition_path      TEXT,
+  UNIQUE(dependency_ecosystem, package_name, package_version, symbol_name, symbol_kind, signature)
+);
+
 -- Logical modules grouping related files (e.g. Rust crates, Python packages).
 CREATE TABLE IF NOT EXISTS modules (
   id          INTEGER PRIMARY KEY AUTOINCREMENT,
@@ -133,6 +160,34 @@ CREATE TABLE IF NOT EXISTS notes (
   UNIQUE(key, scope)
 );
 
+-- Indexed documentation files.
+CREATE TABLE IF NOT EXISTS docs (
+  id           INTEGER PRIMARY KEY AUTOINCREMENT,
+  path         TEXT    NOT NULL,
+  branch       TEXT    NOT NULL DEFAULT '',
+  kind         TEXT    NOT NULL,
+  title        TEXT    NOT NULL,
+  content      TEXT    NOT NULL,
+  content_hash TEXT    NOT NULL,
+  indexed_at   INTEGER NOT NULL DEFAULT (unixepoch()),
+  UNIQUE(path, branch)
+);
+
+-- Heading-based documentation chunks.
+CREATE TABLE IF NOT EXISTS doc_sections (
+  id            INTEGER PRIMARY KEY AUTOINCREMENT,
+  doc_id        INTEGER NOT NULL REFERENCES docs(id) ON DELETE CASCADE,
+  section_index INTEGER NOT NULL,
+  title         TEXT    NOT NULL,
+  depth         INTEGER NOT NULL,
+  heading_path  TEXT    NOT NULL,
+  line_start    INTEGER NOT NULL,
+  line_end      INTEGER NOT NULL,
+  content       TEXT    NOT NULL,
+  content_hash  TEXT    NOT NULL,
+  UNIQUE(doc_id, section_index)
+);
+
 -- Full-text search index over symbol names, signatures, and kinds (BM25 via FTS5).
 CREATE VIRTUAL TABLE IF NOT EXISTS symbols_fts USING fts5(
   name, signature, kind
@@ -214,7 +269,31 @@ CREATE INDEX IF NOT EXISTS idx_annotations_file_id ON annotations(file_id);
 CREATE INDEX IF NOT EXISTS idx_coverage_runs_ingested_at ON coverage_runs(ingested_at);
 CREATE INDEX IF NOT EXISTS idx_coverage_files_path ON coverage_files(file_path);
 CREATE INDEX IF NOT EXISTS idx_coverage_lines_path_line ON coverage_lines(file_path, line_number);
+CREATE INDEX IF NOT EXISTS idx_docs_branch_kind ON docs(branch, kind);
+CREATE INDEX IF NOT EXISTS idx_doc_sections_doc_id ON doc_sections(doc_id);
+CREATE INDEX IF NOT EXISTS idx_external_symbols_dependency_ecosystem ON external_symbols(dependency_ecosystem);
+CREATE INDEX IF NOT EXISTS idx_external_symbols_package_name ON external_symbols(package_name);
+CREATE INDEX IF NOT EXISTS idx_external_symbols_symbol_name ON external_symbols(symbol_name);
 `;
+const ENRICHMENT_SCHEMA_MIGRATIONS = [
+    { table: 'symbols', column: 'resolved_type_signature', sql: 'ALTER TABLE symbols ADD COLUMN resolved_type_signature TEXT' },
+    { table: 'symbols', column: 'resolved_return_type', sql: 'ALTER TABLE symbols ADD COLUMN resolved_return_type TEXT' },
+    { table: 'symbols', column: 'definition_uri', sql: 'ALTER TABLE symbols ADD COLUMN definition_uri TEXT' },
+    { table: 'symbols', column: 'definition_path', sql: 'ALTER TABLE symbols ADD COLUMN definition_path TEXT' },
+    { table: 'symbol_refs', column: 'resolved_type_signature', sql: 'ALTER TABLE symbol_refs ADD COLUMN resolved_type_signature TEXT' },
+    { table: 'symbol_refs', column: 'resolved_return_type', sql: 'ALTER TABLE symbol_refs ADD COLUMN resolved_return_type TEXT' },
+    { table: 'symbol_refs', column: 'definition_uri', sql: 'ALTER TABLE symbol_refs ADD COLUMN definition_uri TEXT' },
+    { table: 'symbol_refs', column: 'definition_path', sql: 'ALTER TABLE symbol_refs ADD COLUMN definition_path TEXT' },
+    { table: 'external_symbols', column: 'resolved_type_signature', sql: 'ALTER TABLE external_symbols ADD COLUMN resolved_type_signature TEXT' },
+    { table: 'external_symbols', column: 'resolved_return_type', sql: 'ALTER TABLE external_symbols ADD COLUMN resolved_return_type TEXT' },
+    { table: 'external_symbols', column: 'definition_uri', sql: 'ALTER TABLE external_symbols ADD COLUMN definition_uri TEXT' },
+    { table: 'external_symbols', column: 'definition_path', sql: 'ALTER TABLE external_symbols ADD COLUMN definition_path TEXT' },
+];
+const ENRICHMENT_INDEX_MIGRATIONS = [
+    'CREATE INDEX IF NOT EXISTS idx_symbols_definition_path ON symbols(definition_path)',
+    'CREATE INDEX IF NOT EXISTS idx_symbol_refs_definition_path ON symbol_refs(definition_path)',
+    'CREATE INDEX IF NOT EXISTS idx_external_symbols_definition_path ON external_symbols(definition_path)',
+];
 // ─── Public API ───────────────────────────────────────────────────────────────
 /**
  * Opens (or creates) the SQLite database at `path` and initialises the schema.
@@ -229,8 +308,23 @@ export function openDb(path) {
     db.pragma('foreign_keys = ON');
     // Create all tables in a single transaction.
     db.exec(DDL);
+    ensureEnrichmentSchema(db);
     return db;
 }
+function ensureEnrichmentSchema(db) {
+    for (const migration of ENRICHMENT_SCHEMA_MIGRATIONS) {
+        if (!hasTableColumn(db, migration.table, migration.column)) {
+            db.exec(migration.sql);
+        }
+    }
+    for (const indexMigration of ENRICHMENT_INDEX_MIGRATIONS) {
+        db.exec(indexMigration);
+    }
+}
+function hasTableColumn(db, table, column) {
+    const rows = db.pragma(`table_info(${table})`);
+    return rows.some((row) => row.name === column);
+}
 // ─── kb_meta helpers ──────────────────────────────────────────────────────────
 export const KB_META_INDEX_CHECKPOINT = 'index_checkpoint';
 export const KB_META_LAST_HEAD_SHA = 'last_known_head_sha';

package/dist/indexer/db.js.map

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package/dist/indexer/docs.d.ts

@@ -0,0 +1,42 @@
+export type DocumentKind = 'readme' | 'adr' | 'architecture' | 'design' | 'guide' | 'changelog' | 'reference' | 'text';
+export interface DocumentSection {
+    title: string;
+    depth: number;
+    headingPath: string[];
+    line: number;
+}
+export interface DocumentationFile {
+    path: string;
+    kind: DocumentKind;
+    title: string;
+    content: string;
+    hash: string;
+    sections: DocumentSection[];
+    chunks: DocumentChunk[];
+}
+export interface DocumentChunk {
+    sectionIndex: number;
+    title: string;
+    depth: number;
+    headingPath: string[];
+    lineStart: number;
+    lineEnd: number;
+    content: string;
+    hash: string;
+}
+export interface DocsDiscoveryConfig {
+    rootDir: string;
+    includeGlobs?: string[];
+    excludeGlobs?: string[];
+    extensions?: string[];
+}
+export declare const DEFAULT_DOC_EXTENSIONS: string[];
+export declare const DEFAULT_DOC_INCLUDE_GLOBS: string[];
+export declare function discoverDocumentationFiles(config: DocsDiscoveryConfig): Promise<DocumentationFile[]>;
+export declare function inferDocumentKind(filePath: string): DocumentKind;
+export declare function inferDocumentTitle(filePath: string, content: string): string;
+export declare function inferDocumentSections(filePath: string, content: string): DocumentSection[];
+export declare function inferDocumentChunks(filePath: string, content: string, sections: DocumentSection[]): DocumentChunk[];
+export declare function inferSeededDocNoteKey(doc: Pick<DocumentationFile, 'path' | 'kind'>): string | null;
+export declare function buildDocNoteScope(docPath: string, branch: string): string;
+//# sourceMappingURL=docs.d.ts.map

package/dist/indexer/docs.d.ts.map

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