@j0hanz/filesystem-mcp 2.5.2 → 2.6.1

package/README.md

@@ -252,7 +252,7 @@ All tools are scoped to the configured roots. Call `list_roots` first to discove
 | Tool           | Description                                                                                                                                                                                                          |
 | :------------- | :------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
 | `create`       | Create one or more files, creating parent directories as needed. An existing file prompts the user to confirm the overwrite; `overwrite: true` on an entry skips the prompt, `append: true` adds to the end instead. |
-| `edit`         | Apply sequential literal string replacements to one or more files (max 5 per call).                                                                                                                                  |
+| `edit`         | Apply sequential literal string replacements to one or more files (up to 5 files per call, 100 edits per file).                                                                                                      |
 | `move`         | Move, rename, or copy (`copy: true`) one or more files/directories to explicit destinations.                                                                                                                         |
 | `delete`       | Permanently delete one or more files or directories. This action is irreversible.                                                                                                                                    |
 | `replace_text` | Bulk search-and-replace across files matching a glob pattern.                                                                                                                                                        |
@@ -276,30 +276,37 @@ All tools are scoped to the configured roots. Call `list_roots` first to discove
 
 ```text
 filesystem-mcp/
-├── __tests__/        Test suites
+├── __tests__/          Test suites (node --test) and shared helpers
+├── docs/adr/           Architecture decision records
+├── mcpb/manifest.json  Claude Desktop extension manifest
+├── scripts/            Release-path scripts (MCPB pack, Smithery publish)
 ├── src/
-│   ├── core/         Path guarding, filesystem abstraction, concurrency, observability
-│   ├── tools/        Tool definitions and registration
-│   ├── index.ts      Process entrypoint and transport selection
-│   ├── server.ts     Server factory and registrar composition
-│   ├── transport/    stdio and Streamable HTTP transport setup
-│   ├── prompts.ts    Prompt definitions and registration
-│   └── resources.ts  Resource definitions and registration
-└── Dockerfile        Multi-stage alpine build, non-root user
+│   ├── core/           Path guarding, filesystem facade, search, stores, watchers
+│   ├── tools/          One file per tool, plus define.ts (registration) and batch.ts
+│   ├── transport/      stdio.ts, http.ts, http-policy.ts (auth, Origin, rate limit), shared.ts
+│   ├── cli.ts          Argument parsing and --print-config
+│   ├── cli-help.ts     --help / --version text
+│   ├── index.ts        Process entrypoint, shutdown, transport selection
+│   ├── instructions.ts Server instructions sent to every client
+│   ├── prompts.ts      Prompt definitions and registration
+│   ├── resources.ts    Resource definitions, subscriptions, completion
+│   ├── server.ts       Server factory and registrar composition
+│   └── transport.ts    Facade re-exporting startServer / startHttpServer
+└── Dockerfile          Multi-stage alpine build, non-root user
 ```
 
-Runtime composition flows from `src/index.ts` to `src/transport.ts`, then to
+Runtime composition flows from `src/index.ts` to `src/transport/` (stdio or HTTP), then to
 `src/server.ts`, the registrars, and finally `src/core/`. Each registrar owns
 the narrow dependency contract it consumes.
 
-| Path                  | Purpose                                                        |
-| :-------------------- | :------------------------------------------------------------- |
-| `src/core/path.ts`    | `PathGuard` — validates every path against allowed roots       |
-| `src/core/fs.ts`      | `GuardedFileSystem` — guarded filesystem facade                |
-| `src/tools/define.ts` | Tool registration and execution framework                      |
-| `src/tools/batch.ts`  | Batch helpers (runOverPaths, isTotalFailure)                   |
-| `src/server.ts`       | Builds shared dependencies and invokes the three registrars    |
-| `src/transport.ts`    | Owns stdio and Streamable HTTP setup around the server factory |
+| Path                  | Purpose                                                                         |
+| :-------------------- | :------------------------------------------------------------------------------ |
+| `src/core/path.ts`    | `PathGuard` — validates every path against allowed roots                        |
+| `src/core/fs.ts`      | `GuardedFileSystem` — guarded filesystem facade                                 |
+| `src/tools/define.ts` | Tool registration and execution framework                                       |
+| `src/tools/batch.ts`  | Batch helpers (runOverPaths, isTotalFailure)                                    |
+| `src/server.ts`       | Builds shared dependencies and invokes the three registrars                     |
+| `src/transport/`      | stdio (`stdio.ts`), Streamable HTTP (`http.ts`), HTTP policy (`http-policy.ts`) |
 
 ## Configuration
 

package/dist/cli.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":"AAuBA,qBAAa,YAAa,SAAQ,KAAK;gBACzB,OAAO,EAAE,MAAM;CAI5B;AAyFD,wBAAsB,SAAS,IAAI,OAAO,CAAC;IACzC,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,QAAQ,EAAE,OAAO,CAAC;IAClB,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;IACzB,QAAQ,EAAE,OAAO,CAAC;IAClB,WAAW,EAAE,OAAO,CAAC;IACrB,QAAQ,EAAE,MAAM,GAAG,SAAS,CAAC;IAC7B,MAAM,EAAE,MAAM,GAAG,SAAS,CAAC;CAC5B,CAAC,CAsED;AAMD,wBAAsB,cAAc,CAAC,OAAO,EAAE;IAC5C,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,QAAQ,EAAE,OAAO,CAAC;IAClB,QAAQ,EAAE,OAAO,CAAC;IAClB,mFAAmF;IACnF,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB,GAAG,OAAO,CAAC,IAAI,CAAC,CAkChB"}

package/dist/cli.js

@@ -3,8 +3,9 @@ import { parseArgs as utilParseArgs } from 'node:util';
 import { printHelpAndExit, printVersionAndExit } from "./cli-help.js";
 import { cli } from "./core/config.js";
 import { formatUnknownErrorMessage } from "./core/errors.js";
-import { getReservedDeviceNameForPath, isWindowsDriveRelativePath, normalizePath, parseTrueEnvFlag, } from "./core/path-utils.js";
+import { getReservedDeviceNameForPath, IS_WINDOWS, isWindowsDriveRelativePath, normalizePath, parseTrueEnvFlag, } from "./core/path-utils.js";
 import { PathGuard } from "./core/path.js";
+import { describeSensitivePolicy } from "./core/sensitive.js";
 import { getMaxTextFileSize } from "./core/util.js";
 import { registeredTools } from "./tools/index.js";
 // ════════════════════════════════════════════════════════════
@@ -23,7 +24,7 @@ function validateCliPath(inputPath) {
     if (isWindowsDriveRelativePath(inputPath)) {
         throw new CliExitError('Windows drive-relative paths are not allowed. Use C:\\path or C:/path instead of C:path.');
     }
-    const reserved = getReservedDeviceNameForPath(inputPath);
+    const reserved = IS_WINDOWS ? getReservedDeviceNameForPath(inputPath) : undefined;
     if (reserved) {
         throw new CliExitError(`Windows reserved device name not allowed: ${reserved}.`);
     }
@@ -170,7 +171,7 @@ export async function runPrintConfig(options) {
         cliAllowedDirs: options.allowedDirs,
     });
     await pathGuard.recomputeAllowedDirectories();
-    const allowedRoots = pathGuard.getAllowedDirectories();
+    const allowedRoots = pathGuard.getRoots();
     const tools = registeredTools(options.readOnly).map((t) => t.name);
     // Derived, never assumed: `--print-config --port 3000` reports the HTTP bind
     // that `--port` would actually have started, not the stdio default.
@@ -183,6 +184,14 @@ export async function runPrintConfig(options) {
         tools,
         apiKey: options.apiKey ? '***' : null,
         limits: { maxFileSizeBytes: getMaxTextFileSize() },
+        // Everything that can produce ACCESS_DENIED, read through the same
+        // sources the guard and the matcher use (flag beats env).
+        policy: {
+            ...describeSensitivePolicy(),
+            rootBoundary: cli.rootBoundary ?? process.env['FS_ROOT_BOUNDARY'] ?? null,
+            allowMissingRoots: cli.allowMissingRoots ??
+                parseTrueEnvFlag(process.env['FS_ALLOW_MISSING_ROOTS'], 'FS_ALLOW_MISSING_ROOTS'),
+        },
     };
     process.stdout.write(`${JSON.stringify(config, null, 2)}\n`);
 }

package/dist/cli.js.map

@@ -1 +1 @@
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type { Stats } from 'node:fs';\nimport { stat } from 'node:fs/promises';\nimport { parseArgs as utilParseArgs } from 'node:util';\n\nimport { printHelpAndExit, printVersionAndExit } from './cli-help.ts';\nimport { cli } from './core/config.ts';\nimport { formatUnknownErrorMessage } from './core/errors.ts';\nimport {\n  getReservedDeviceNameForPath,\n  isWindowsDriveRelativePath,\n  normalizePath,\n  parseTrueEnvFlag,\n} from './core/path-utils.ts';\nimport { PathGuard } from './core/path.ts';\nimport { getMaxTextFileSize } from './core/util.ts';\nimport { registeredTools } from './tools/index.ts';\n\n// ════════════════════════════════════════════════════════════\n// Path & Config Utilities — pure functions and error types\n// ════════════════════════════════════════════════════════════\n\nexport class CliExitError extends Error {\n  constructor(message: string) {\n    super(message);\n    this.name = 'CliExitError';\n  }\n}\n\nfunction validateCliPath(inputPath: string): void {\n  if (inputPath.includes('\\0')) {\n    throw new CliExitError('Path contains null bytes.');\n  }\n\n  if (isWindowsDriveRelativePath(inputPath)) {\n    throw new CliExitError(\n      'Windows drive-relative paths are not allowed. Use C:\\\\path or C:/path instead of C:path.',\n    );\n  }\n\n  const reserved = getReservedDeviceNameForPath(inputPath);\n  if (reserved) {\n    throw new CliExitError(`Windows reserved device name not allowed: ${reserved}.`);\n  }\n}\n\nasync function validateDirectoryPath(inputPath: string, allowMissing = false): Promise<string> {\n  const normalized = normalizePath(inputPath);\n\n  let stats: Stats;\n  try {\n    stats = await stat(normalized);\n  } catch (error) {\n    if (allowMissing) return normalized;\n    // Node's own message already names the syscall and the errno.\n    throw new Error(`Cannot access directory ${inputPath}: ${formatUnknownErrorMessage(error)}`, {\n      cause: error,\n    });\n  }\n\n  if (!stats.isDirectory()) throw new Error(`${inputPath} is not a directory`);\n  return normalized;\n}\n\n// No dedupe here: PathGuard's `normalizeAllowedDirectories` already Set-dedupes\n// the normalized set, and containment checks are case-insensitive where the\n// filesystem is.\nasync function normalizeAndValidateDirs(\n  paths: readonly string[],\n  allowMissing = false,\n): Promise<string[]> {\n  const normalized: string[] = [];\n  for (const p of paths) {\n    normalized.push(await validateDirectoryPath(p, allowMissing));\n  }\n  return normalized;\n}\n\nfunction normalizeCliExitMessage(error: unknown): string {\n  const rawMessage = formatUnknownErrorMessage(error);\n  return rawMessage.startsWith('Error:') ? rawMessage : `Error: ${rawMessage}`;\n}\n\nfunction parsePortOption(raw: unknown): number | undefined {\n  // '' reads as unset: FS_PORT set-but-empty (compose templating) means stdio.\n  if (raw === undefined || raw === '') return undefined;\n  const n = Number(raw);\n  if (!Number.isInteger(n) || n < 1 || n > 65535) {\n    throw new CliExitError(`Error: --port / FS_PORT must be an integer between 1 and 65535`);\n  }\n  return n;\n}\n\nconst CLI_PARSER_CONFIG = {\n  options: {\n    'allow-cwd': { type: 'boolean', default: false },\n    'read-only': { type: 'boolean', default: false },\n    'print-config': { type: 'boolean', default: false },\n    port: { type: 'string' },\n    help: { type: 'boolean', short: 'h' },\n    version: { type: 'boolean', short: 'v' },\n    'log-level': { type: 'string' },\n    'http-host': { type: 'string' },\n    'api-key': { type: 'string' },\n    'allow-sensitive': { type: 'boolean', default: false },\n    'root-boundary': { type: 'string' },\n    'max-file-size': { type: 'string' },\n    'walk-cwd': { type: 'boolean', default: false },\n    deny: { type: 'string', multiple: true },\n    allow: { type: 'string', multiple: true },\n    'allow-missing-roots': { type: 'boolean', default: false },\n  },\n  strict: true,\n  allowPositionals: true,\n} as const;\n\nexport async function parseArgs(): Promise<{\n  allowedDirs: string[];\n  allowCwd: boolean;\n  port: number | undefined;\n  readOnly: boolean;\n  printConfig: boolean;\n  httpHost: string | undefined;\n  apiKey: string | undefined;\n}> {\n  try {\n    const parsed = utilParseArgs(CLI_PARSER_CONFIG);\n\n    if (parsed.values.help) {\n      printHelpAndExit();\n    }\n\n    if (parsed.values.version) {\n      printVersionAndExit();\n    }\n\n    for (const positional of parsed.positionals) {\n      validateCliPath(positional);\n    }\n\n    const v = parsed.values;\n    // `--http-host` and `--api-key` are returned to the caller and handed to\n    // the server as config. Every other flag lands in the CLI-override store\n    // (core/config.ts) — the one owner of the flag-beats-env rule — which deep\n    // core readers (path, sensitive, observability, util) consult before\n    // falling back to the operator's environment. Nothing writes process.env.\n    const httpHost = v['http-host'] ?? process.env['FS_HTTP_HOST'];\n    const apiKey = v['api-key'] ?? process.env['FS_API_KEY'];\n    if (v['log-level'] !== undefined) cli.logLevel = v['log-level'];\n    if (v['max-file-size'] !== undefined) cli.maxFileSize = v['max-file-size'];\n    if (v['root-boundary'] !== undefined) cli.rootBoundary = v['root-boundary'];\n    if (v['allow-sensitive']) cli.allowSensitive = true;\n    if (v['walk-cwd']) cli.allowCwdWalk = true;\n    if (v['allow-missing-roots']) cli.allowMissingRoots = true;\n    const patternList = (entries: readonly string[] | undefined): readonly string[] => [\n      ...new Set((entries ?? []).map((entry) => entry.trim()).filter(Boolean)),\n    ];\n    const denyPatterns = patternList(v.deny);\n    if (denyPatterns.length > 0) cli.denyPatterns = denyPatterns;\n    const allowPatterns = patternList(v.allow);\n    if (allowPatterns.length > 0) cli.allowPatterns = allowPatterns;\n\n    const allowCwd =\n      v['allow-cwd'] ||\n      v['walk-cwd'] ||\n      parseTrueEnvFlag(process.env['FS_ALLOW_CWD_WALK'], 'FS_ALLOW_CWD_WALK');\n    const readOnly = v['read-only'];\n    const printConfig = v['print-config'];\n    const port = parsePortOption(v.port ?? process.env['FS_PORT']);\n    const allowMissingRoots =\n      v['allow-missing-roots'] ||\n      parseTrueEnvFlag(process.env['FS_ALLOW_MISSING_ROOTS'], 'FS_ALLOW_MISSING_ROOTS');\n\n    const allowedDirs =\n      parsed.positionals.length > 0\n        ? await normalizeAndValidateDirs(parsed.positionals, allowMissingRoots)\n        : [];\n\n    return {\n      allowedDirs,\n      allowCwd,\n      port,\n      readOnly,\n      printConfig,\n      httpHost,\n      apiKey,\n    };\n  } catch (error: unknown) {\n    if (error instanceof CliExitError) {\n      throw error;\n    }\n\n    throw new CliExitError(normalizeCliExitMessage(error));\n  }\n}\n\n// ════════════════════════════════════════════════════════════\n// Effective config reporting — prints the resolved server config as JSON\n// ════════════════════════════════════════════════════════════\n\nexport async function runPrintConfig(options: {\n  allowedDirs: string[];\n  allowCwd: boolean;\n  readOnly: boolean;\n  /** Resolved `--port`. Present means the launch this reports on is an HTTP bind. */\n  port?: number;\n  httpHost?: string;\n  apiKey?: string;\n}): Promise<void> {\n  const pathGuard = new PathGuard({\n    allowCwd: options.allowCwd,\n    cliAllowedDirs: options.allowedDirs,\n  });\n  await pathGuard.recomputeAllowedDirectories();\n  const allowedRoots = pathGuard.getAllowedDirectories();\n\n  const tools = registeredTools(options.readOnly).map((t) => t.name);\n\n  // Derived, never assumed: `--print-config --port 3000` reports the HTTP bind\n  // that `--port` would actually have started, not the stdio default.\n  const config = {\n    transport:\n      options.port !== undefined\n        ? `http://${options.httpHost ?? '127.0.0.1'}:${String(options.port)}`\n        : 'stdio',\n    readOnly: options.readOnly,\n    allowedRoots,\n    tools,\n    apiKey: options.apiKey ? 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'CliExitError';\n  }\n}\n\nfunction validateCliPath(inputPath: string): void {\n  if (inputPath.includes('\\0')) {\n    throw new CliExitError('Path contains null bytes.');\n  }\n\n  if (isWindowsDriveRelativePath(inputPath)) {\n    throw new CliExitError(\n      'Windows drive-relative paths are not allowed. Use C:\\\\path or C:/path instead of C:path.',\n    );\n  }\n\n  const reserved = IS_WINDOWS ? getReservedDeviceNameForPath(inputPath) : undefined;\n  if (reserved) {\n    throw new CliExitError(`Windows reserved device name not allowed: ${reserved}.`);\n  }\n}\n\nasync function validateDirectoryPath(inputPath: string, allowMissing = false): Promise<string> {\n  const normalized = normalizePath(inputPath);\n\n  let stats: Stats;\n  try {\n    stats = await stat(normalized);\n  } catch (error) {\n    if (allowMissing) return normalized;\n    // Node's own message already names the syscall and the errno.\n    throw new Error(`Cannot access directory ${inputPath}: ${formatUnknownErrorMessage(error)}`, {\n      cause: error,\n    });\n  }\n\n  if (!stats.isDirectory()) throw new Error(`${inputPath} is not a directory`);\n  return normalized;\n}\n\n// No dedupe here: PathGuard's `normalizeAllowedDirectories` already Set-dedupes\n// the normalized set, and containment checks are case-insensitive where the\n// filesystem is.\nasync function normalizeAndValidateDirs(\n  paths: readonly string[],\n  allowMissing = false,\n): Promise<string[]> {\n  const normalized: string[] = [];\n  for (const p of paths) {\n    normalized.push(await validateDirectoryPath(p, allowMissing));\n  }\n  return normalized;\n}\n\nfunction normalizeCliExitMessage(error: unknown): string {\n  const rawMessage = formatUnknownErrorMessage(error);\n  return rawMessage.startsWith('Error:') ? rawMessage : `Error: ${rawMessage}`;\n}\n\nfunction parsePortOption(raw: unknown): number | undefined {\n  // '' reads as unset: FS_PORT set-but-empty (compose templating) means stdio.\n  if (raw === undefined || raw === '') return undefined;\n  const n = Number(raw);\n  if (!Number.isInteger(n) || n < 1 || n > 65535) {\n    throw new CliExitError(`Error: --port / FS_PORT must be an integer between 1 and 65535`);\n  }\n  return n;\n}\n\nconst CLI_PARSER_CONFIG = {\n  options: {\n    'allow-cwd': { type: 'boolean', default: false },\n    'read-only': { type: 'boolean', default: false },\n    'print-config': { type: 'boolean', default: false },\n    port: { type: 'string' },\n    help: { type: 'boolean', short: 'h' },\n    version: { type: 'boolean', short: 'v' },\n    'log-level': { type: 'string' },\n    'http-host': { type: 'string' },\n    'api-key': { type: 'string' },\n    'allow-sensitive': { type: 'boolean', default: false },\n    'root-boundary': { type: 'string' },\n    'max-file-size': { type: 'string' },\n    'walk-cwd': { type: 'boolean', default: false },\n    deny: { type: 'string', multiple: true },\n    allow: { type: 'string', multiple: true },\n    'allow-missing-roots': { type: 'boolean', default: false },\n  },\n  strict: true,\n  allowPositionals: true,\n} as const;\n\nexport async function parseArgs(): Promise<{\n  allowedDirs: string[];\n  allowCwd: boolean;\n  port: number | undefined;\n  readOnly: boolean;\n  printConfig: boolean;\n  httpHost: string | undefined;\n  apiKey: string | undefined;\n}> {\n  try {\n    const parsed = utilParseArgs(CLI_PARSER_CONFIG);\n\n    if (parsed.values.help) {\n      printHelpAndExit();\n    }\n\n    if (parsed.values.version) {\n      printVersionAndExit();\n    }\n\n    for (const positional of parsed.positionals) {\n      validateCliPath(positional);\n    }\n\n    const v = parsed.values;\n    // `--http-host` and `--api-key` are returned to the caller and handed to\n    // the server as config. Every other flag lands in the CLI-override store\n    // (core/config.ts) — the one owner of the flag-beats-env rule — which deep\n    // core readers (path, sensitive, observability, util) consult before\n    // falling back to the operator's environment. Nothing writes process.env.\n    const httpHost = v['http-host'] ?? process.env['FS_HTTP_HOST'];\n    const apiKey = v['api-key'] ?? process.env['FS_API_KEY'];\n    if (v['log-level'] !== undefined) cli.logLevel = v['log-level'];\n    if (v['max-file-size'] !== undefined) cli.maxFileSize = v['max-file-size'];\n    if (v['root-boundary'] !== undefined) cli.rootBoundary = v['root-boundary'];\n    if (v['allow-sensitive']) cli.allowSensitive = true;\n    if (v['walk-cwd']) cli.allowCwdWalk = true;\n    if (v['allow-missing-roots']) cli.allowMissingRoots = true;\n    const patternList = (entries: readonly string[] | undefined): readonly string[] => [\n      ...new Set((entries ?? []).map((entry) => entry.trim()).filter(Boolean)),\n    ];\n    const denyPatterns = patternList(v.deny);\n    if (denyPatterns.length > 0) cli.denyPatterns = denyPatterns;\n    const allowPatterns = patternList(v.allow);\n    if (allowPatterns.length > 0) cli.allowPatterns = allowPatterns;\n\n    const allowCwd =\n      v['allow-cwd'] ||\n      v['walk-cwd'] ||\n      parseTrueEnvFlag(process.env['FS_ALLOW_CWD_WALK'], 'FS_ALLOW_CWD_WALK');\n    const readOnly = v['read-only'];\n    const printConfig = v['print-config'];\n    const port = parsePortOption(v.port ?? process.env['FS_PORT']);\n    const allowMissingRoots =\n      v['allow-missing-roots'] ||\n      parseTrueEnvFlag(process.env['FS_ALLOW_MISSING_ROOTS'], 'FS_ALLOW_MISSING_ROOTS');\n\n    const allowedDirs =\n      parsed.positionals.length > 0\n        ? await normalizeAndValidateDirs(parsed.positionals, allowMissingRoots)\n        : [];\n\n    return {\n      allowedDirs,\n      allowCwd,\n      port,\n      readOnly,\n      printConfig,\n      httpHost,\n      apiKey,\n    };\n  } catch (error: unknown) {\n    if (error instanceof CliExitError) {\n      throw error;\n    }\n\n    throw new CliExitError(normalizeCliExitMessage(error));\n  }\n}\n\n// ════════════════════════════════════════════════════════════\n// Effective config reporting — prints the resolved server config as JSON\n// ════════════════════════════════════════════════════════════\n\nexport async function runPrintConfig(options: {\n  allowedDirs: string[];\n  allowCwd: boolean;\n  readOnly: boolean;\n  /** Resolved `--port`. Present means the launch this reports on is an HTTP bind. */\n  port?: number;\n  httpHost?: string;\n  apiKey?: string;\n}): Promise<void> {\n  const pathGuard = new PathGuard({\n    allowCwd: options.allowCwd,\n    cliAllowedDirs: options.allowedDirs,\n  });\n  await pathGuard.recomputeAllowedDirectories();\n  const allowedRoots = pathGuard.getRoots();\n\n  const tools = registeredTools(options.readOnly).map((t) => t.name);\n\n  // Derived, never assumed: `--print-config --port 3000` reports the HTTP bind\n  // that `--port` would actually have started, not the stdio default.\n  const config = {\n    transport:\n      options.port !== undefined\n        ? `http://${options.httpHost ?? '127.0.0.1'}:${String(options.port)}`\n        : 'stdio',\n    readOnly: options.readOnly,\n    allowedRoots,\n    tools,\n    apiKey: options.apiKey ? 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package/dist/core/concurrency.d.ts

@@ -6,15 +6,18 @@ export declare const StoppedReasonSchema: z.ZodOptional<z.ZodEnum<{
     timeout: "timeout";
 }>>;
 /**
- * The subset `search_text` and `find_files` can actually emit. Their scans call
- * only `hitMaxResults` and `hitAbort` (search.ts), never `hitMaxFiles`, so the
- * three-value enum published a value no response can carry and disagreed with
- * both tools' own descriptions.
+ * The subset `search_text` and `find_files` can actually emit. Both scans
+ * resolve the stop through `resolveStopReason` below, which answers only
+ * `maxResults` or `timeout` — never `maxFiles` — so the three-value enum
+ * published a value no response can carry and disagreed with both tools' own
+ * descriptions.
  */
 export declare const SearchStoppedReasonSchema: z.ZodOptional<z.ZodEnum<{
     maxResults: "maxResults";
     timeout: "timeout";
 }>>;
+/** The one precedence both scans share: the result cap wins over an abort that fired the same iteration. */
+export declare function resolveStopReason(hitCap: boolean, aborted: boolean): 'maxResults' | 'timeout' | undefined;
 interface ParallelResult<R> {
     results: {
         index: number;

package/dist/core/concurrency.d.ts.map

@@ -1 +1 @@
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package/dist/core/concurrency.js

@@ -3,12 +3,17 @@ import { normalizeUnknownError } from "./errors.js";
 import { PARALLEL_CONCURRENCY } from "./util.js";
 export const StoppedReasonSchema = z.enum(['maxResults', 'maxFiles', 'timeout']).optional();
 /**
- * The subset `search_text` and `find_files` can actually emit. Their scans call
- * only `hitMaxResults` and `hitAbort` (search.ts), never `hitMaxFiles`, so the
- * three-value enum published a value no response can carry and disagreed with
- * both tools' own descriptions.
+ * The subset `search_text` and `find_files` can actually emit. Both scans
+ * resolve the stop through `resolveStopReason` below, which answers only
+ * `maxResults` or `timeout` — never `maxFiles` — so the three-value enum
+ * published a value no response can carry and disagreed with both tools' own
+ * descriptions.
  */
 export const SearchStoppedReasonSchema = z.enum(['maxResults', 'timeout']).optional();
+/** The one precedence both scans share: the result cap wins over an abort that fired the same iteration. */
+export function resolveStopReason(hitCap, aborted) {
+    return hitCap ? 'maxResults' : aborted ? 'timeout' : undefined;
+}
 export async function processInParallel(items, processor, concurrency = PARALLEL_CONCURRENCY, signal) {
     const itemCount = items.length;
     if (itemCount === 0)

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Their scans call\n * only `hitMaxResults` and `hitAbort` (search.ts), never `hitMaxFiles`, so the\n * three-value enum published a value no response can carry and disagreed with\n * both tools' own descriptions.\n */\nexport const SearchStoppedReasonSchema = z.enum(['maxResults', 'timeout']).optional();\n\ninterface ParallelResult<R> {\n  results: { index: number; value: R }[];\n  errors: { index: number; error: Error }[];\n}\n\nexport async function processInParallel<T, R>(\n  items: readonly T[],\n  processor: (item: T, index: number) => Promise<R>,\n  concurrency: number = PARALLEL_CONCURRENCY,\n  signal?: AbortSignal,\n): Promise<ParallelResult<R>> {\n  const itemCount = items.length;\n  if (itemCount === 0) return { results: [], errors: [] };\n\n  const results: { index: number; value: R }[] = [];\n  const errors: { index: number; error: Error }[] = [];\n\n  signal?.throwIfAborted();\n\n  let nextIndex = 0;\n  // Set when a worker saw the signal fire before an item ran — the only\n  // shape in which the batch is genuinely incomplete. 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Both\n * are checked before dispatch, so the returned reason is exactly one — the\n * loop breaks on the first that fires. `undefined` means every entry was\n * dispatched.\n */\nexport async function processEntriesConcurrently(\n  entries: AsyncIterable<{ path: string }> | Iterable<{ path: string }>,\n  options: {\n    signal: AbortSignal | undefined;\n    concurrency: number;\n    maxEntries?: number;\n    shouldStop?: () => boolean;\n    onEntry: () => void;\n    onError?: (entryPath: string, err: unknown) => void;\n    runEntry: (entryPath: string) => Promise<void>;\n  },\n): Promise<StoppedReason | undefined> {\n  const pending = new Set<Promise<void>>();\n  const { signal, concurrency, maxEntries, shouldStop, onEntry, onError, runEntry } = options;\n  let stoppedReason: StoppedReason | undefined;\n  let dispatched = 0;\n\n  const waitForSlot = async (): Promise<void> => {\n    if (pending.size < concurrency) return;\n    await Promise.race(pending);\n  };\n\n  for await (const entry of entries) {\n    // The signal is cancellation OR the caller's timeout: stop dispatching and\n    // let the caller report the run as incomplete rather than as a full sweep.\n    if (signal?.aborted) {\n      stoppedReason = 'timeout';\n      break;\n    }\n    if (maxEntries !== undefined && dispatched >= maxEntries) {\n      stoppedReason = 'maxFiles';\n      break;\n    }\n    // Check the result cap before waiting for a slot so an in-flight task that\n    // already crossed the cap stops dispatch without an extra wait...\n    if (shouldStop?.()) {\n      stoppedReason = 'maxResults';\n      break;\n    }\n    await waitForSlot();\n    // ...and again after the slot frees, since tasks settle concurrently. The\n    // cap can still be exceeded by at most `concurrency - 1` already-dispatched\n    // tasks that are mid-flight; that overrun is inherent to concurrent dispatch.\n    if (shouldStop?.()) {\n      stoppedReason = 'maxResults';\n      break;\n    }\n    onEntry();\n    dispatched++;\n\n    // Track a non-rejecting wrapper so a rejected task can never propagate out of\n    // Promise.race(pending) in waitForSlot() and abort the loop before the final\n    // drain below (which would silently abandon other in-flight tasks).\n    // runEntry is expected to catch its own errors; if it unexpectedly throws,\n    // record it as a failure rather than silently dropping it.\n    const tracked = runEntry(entry.path).catch((err: unknown) => {\n      onError?.(entry.path, err);\n    });\n    pending.add(tracked);\n    void tracked.finally(() => {\n      pending.delete(tracked);\n    });\n  }\n\n  if (pending.size > 0) {\n    await Promise.allSettled([...pending]);\n  }\n\n  return stoppedReason;\n}\n\nexport function withAbort<T>(promise: Promise<T>, signal?: AbortSignal): Promise<T> {\n  if (!signal) {\n    return promise;\n  }\n  signal.throwIfAborted();\n  let onAbort: (() => void) | undefined;\n  return Promise.race([\n    promise,\n    new Promise<never>((_, reject) => {\n      onAbort = () => {\n        reject(signal.reason instanceof Error ? signal.reason : new Error('Operation aborted'));\n      };\n      signal.addEventListener('abort', onAbort, { once: true });\n    }),\n  ]).finally(() => {\n    if (onAbort) {\n      signal.removeEventListener('abort', onAbort);\n    }\n  });\n}\n"]}
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Both scans\n * resolve the stop through `resolveStopReason` below, which answers only\n * `maxResults` or `timeout` — never `maxFiles` — so the three-value enum\n * published a value no response can carry and disagreed with both tools' own\n * descriptions.\n */\nexport const SearchStoppedReasonSchema = z.enum(['maxResults', 'timeout']).optional();\n\n/** The one precedence both scans share: the result cap wins over an abort that fired the same iteration. */\nexport function resolveStopReason(\n  hitCap: boolean,\n  aborted: boolean,\n): 'maxResults' | 'timeout' | undefined {\n  return hitCap ? 'maxResults' : aborted ? 'timeout' : undefined;\n}\n\ninterface ParallelResult<R> {\n  results: { index: number; value: R }[];\n  errors: { index: number; error: Error }[];\n}\n\nexport async function processInParallel<T, R>(\n  items: readonly T[],\n  processor: (item: T, index: number) => Promise<R>,\n  concurrency: number = PARALLEL_CONCURRENCY,\n  signal?: AbortSignal,\n): Promise<ParallelResult<R>> {\n  const itemCount = items.length;\n  if (itemCount === 0) return { results: [], errors: [] };\n\n  const results: { index: number; value: R }[] = [];\n  const errors: { index: number; error: Error }[] = [];\n\n  signal?.throwIfAborted();\n\n  let nextIndex = 0;\n  // Set when a worker saw the signal fire before an item ran — the only\n  // shape in which the batch is genuinely incomplete. The annotation\n  // matters: without it control-flow analysis keeps the `false` narrowing\n  // from the initializer and cannot see the closure assignment.\n  let truncated = false as boolean;\n\n  const next = async (): Promise<void> => {\n    while (nextIndex < itemCount) {\n      if (signal?.aborted) {\n        truncated = true;\n        signal.throwIfAborted();\n      }\n\n      const index = nextIndex;\n      nextIndex += 1;\n      const item = items[index];\n      if (item === undefined) {\n        continue;\n      }\n\n      try {\n        // No abort check after the processor: once an item has run, its\n        // result is real work that a write caller may have committed to\n        // disk. Discarding it here would report a finished append as\n        // failed, and a client retry would append twice.\n        const value = await processor(item, index);\n        results.push({ index, value });\n      } catch (error) {\n        errors.push({\n          index,\n          error: normalizeUnknownError(error),\n        });\n      }\n    }\n  };\n\n  const workerCount = Math.min(itemCount, concurrency);\n  const workers: Promise<void>[] = new Array<Promise<void>>(workerCount);\n  for (let index = 0; index < workerCount; index += 1) {\n    workers[index] = next();\n  }\n\n  await Promise.allSettled(workers);\n  // A deadline (AbortSignal.timeout) hit during the run surfaces here as\n  // signal.reason — a TimeoutError — rather than a fresh AbortError, so\n  // callers see TIMEOUT, not CANCELLED. Only a run that actually skipped\n  // items reports the abort: a deadline firing after the last item\n  // finished leaves a complete batch, and returning it beats telling the\n  // caller that committed writes failed. The per-item throws above are\n  // swallowed by allSettled.\n  if (truncated) signal?.throwIfAborted();\n\n  results.sort((left, right) => left.index - right.index);\n  return { results, errors };\n}\n\n/**\n * The streaming sibling of {@link processInParallel}: bounded-concurrency\n * dispatch over an AsyncIterable that may be far larger than the caller wants\n * to walk, so it stops early and reports why.\n *\n * `maxEntries` caps how many entries are dispatched (maxFiles); `shouldStop`\n * lets the caller stop on its own accumulating result count (maxResults). Both\n * are checked before dispatch, so the returned reason is exactly one — the\n * loop breaks on the first that fires. `undefined` means every entry was\n * dispatched.\n */\nexport async function processEntriesConcurrently(\n  entries: AsyncIterable<{ path: string }> | Iterable<{ path: string }>,\n  options: {\n    signal: AbortSignal | undefined;\n    concurrency: number;\n    maxEntries?: number;\n    shouldStop?: () => boolean;\n    onEntry: () => void;\n    onError?: (entryPath: string, err: unknown) => void;\n    runEntry: (entryPath: string) => Promise<void>;\n  },\n): Promise<StoppedReason | undefined> {\n  const pending = new Set<Promise<void>>();\n  const { signal, concurrency, maxEntries, shouldStop, onEntry, onError, runEntry } = options;\n  let stoppedReason: StoppedReason | undefined;\n  let dispatched = 0;\n\n  const waitForSlot = async (): Promise<void> => {\n    if (pending.size < concurrency) return;\n    await Promise.race(pending);\n  };\n\n  for await (const entry of entries) {\n    // The signal is cancellation OR the caller's timeout: stop dispatching and\n    // let the caller report the run as incomplete rather than as a full sweep.\n    if (signal?.aborted) {\n      stoppedReason = 'timeout';\n      break;\n    }\n    if (maxEntries !== undefined && dispatched >= maxEntries) {\n      stoppedReason = 'maxFiles';\n      break;\n    }\n    // Check the result cap before waiting for a slot so an in-flight task that\n    // already crossed the cap stops dispatch without an extra wait...\n    if (shouldStop?.()) {\n      stoppedReason = 'maxResults';\n      break;\n    }\n    await waitForSlot();\n    // ...and again after the slot frees, since tasks settle concurrently. The\n    // cap can still be exceeded by at most `concurrency - 1` already-dispatched\n    // tasks that are mid-flight; that overrun is inherent to concurrent dispatch.\n    if (shouldStop?.()) {\n      stoppedReason = 'maxResults';\n      break;\n    }\n    onEntry();\n    dispatched++;\n\n    // Track a non-rejecting wrapper so a rejected task can never propagate out of\n    // Promise.race(pending) in waitForSlot() and abort the loop before the final\n    // drain below (which would silently abandon other in-flight tasks).\n    // runEntry is expected to catch its own errors; if it unexpectedly throws,\n    // record it as a failure rather than silently dropping it.\n    const tracked = runEntry(entry.path).catch((err: unknown) => {\n      onError?.(entry.path, err);\n    });\n    pending.add(tracked);\n    void tracked.finally(() => {\n      pending.delete(tracked);\n    });\n  }\n\n  if (pending.size > 0) {\n    await Promise.allSettled([...pending]);\n  }\n\n  return stoppedReason;\n}\n\nexport function withAbort<T>(promise: Promise<T>, signal?: AbortSignal): Promise<T> {\n  if (!signal) {\n    return promise;\n  }\n  signal.throwIfAborted();\n  let onAbort: (() => void) | undefined;\n  return Promise.race([\n    promise,\n    new Promise<never>((_, reject) => {\n      onAbort = () => {\n        reject(signal.reason instanceof Error ? signal.reason : new Error('Operation aborted'));\n      };\n      signal.addEventListener('abort', onAbort, { once: true });\n    }),\n  ]).finally(() => {\n    if (onAbort) {\n      signal.removeEventListener('abort', onAbort);\n    }\n  });\n}\n"]}

package/dist/core/config.d.ts

@@ -18,7 +18,7 @@ export interface CliOverrides {
     allowCwdWalk?: boolean;
     /** `--allow-missing-roots` */
     allowMissingRoots?: boolean;
-    /** `--deny` entries (merged with DENYLIST by the reader) */
+    /** `--deny` entries (merged with FS_DENYLIST by the reader) */
     denyPatterns?: readonly string[];
     /** `--allow` entries (merged with FS_ALLOWLIST by the reader; relieve built-ins only) */
     allowPatterns?: readonly string[];

package/dist/core/config.d.ts.map

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package/dist/core/config.js.map

@@ -1 +1 @@
-{"version":3,"file":"config.js","sourceRoot":"","sources":["../../src/core/config.ts"],"names":[],"mappings":"AAAA,0EAA0E;AAC1E,EAAE;AACF,4EAA4E;AAC5E,+EAA+E;AAC/E,yEAAyE;AACzE,gFAAgF;AAChF,gFAAgF;AAChF,kDAAkD;AAElD;;;;;GAKG;AACH,MAAM,CAAC,MAAM,4BAA4B,GACvC,4NAA4N,CAAC;AAqB/N,iFAAiF;AACjF,MAAM,CAAC,MAAM,GAAG,GAAiB,EAAE,CAAC","sourcesContent":["// Resolved CLI-flag overrides — the one owner of the flag-beats-env rule.\n//\n// `parseArgs` (cli.ts) used to write flag values back into `process.env` so\n// deep core readers (path, sensitive, observability, util) would pick them up.\n// That made the environment a hidden mutable config bus. Instead, cli.ts\n// assigns onto `cli` once at startup and each reader consults it first, falling\n// back to the operator's environment. This module deliberately has zero imports\n// so any core module can read it without a cycle.\n\n/**\n * How an operator gives this server a root. Lives here rather than beside its\n * readers because both ends of the repo need it — `index.ts` prints it at\n * startup, `list_roots` returns it when it has nothing to list — and this\n * module is the one place either can import without a cycle.\n */\nexport const NO_POSITIONAL_ROOTS_GUIDANCE =\n  'No positional directories specified. Configure roots with directory arguments, FS_ALLOWED_DIRS, or --allow-cwd. Modern clients with elicitation can also call a tool with a concrete path and approve the requested grant.';\n\nexport interface CliOverrides {\n  /** `--log-level` */\n  logLevel?: string;\n  /** `--max-file-size` (raw string; validated by the reader like the env var) */\n  maxFileSize?: string;\n  /** `--root-boundary` */\n  rootBoundary?: string;\n  /** `--allow-sensitive` */\n  allowSensitive?: boolean;\n  /** `--walk-cwd` */\n  allowCwdWalk?: boolean;\n  /** `--allow-missing-roots` */\n  allowMissingRoots?: boolean;\n  /** `--deny` entries (merged with DENYLIST by the reader) */\n  denyPatterns?: readonly string[];\n  /** `--allow` entries (merged with FS_ALLOWLIST by the reader; relieve built-ins only) */\n  allowPatterns?: readonly string[];\n}\n\n/** Written once by cli.ts; an absent key means \"not set on the command line\". */\nexport const cli: CliOverrides = {};\n"]}
+{"version":3,"file":"config.js","sourceRoot":"","sources":["../../src/core/config.ts"],"names":[],"mappings":"AAAA,0EAA0E;AAC1E,EAAE;AACF,4EAA4E;AAC5E,+EAA+E;AAC/E,yEAAyE;AACzE,gFAAgF;AAChF,gFAAgF;AAChF,kDAAkD;AAElD;;;;;GAKG;AACH,MAAM,CAAC,MAAM,4BAA4B,GACvC,4NAA4N,CAAC;AAqB/N,iFAAiF;AACjF,MAAM,CAAC,MAAM,GAAG,GAAiB,EAAE,CAAC","sourcesContent":["// Resolved CLI-flag overrides — the one owner of the flag-beats-env rule.\n//\n// `parseArgs` (cli.ts) used to write flag values back into `process.env` so\n// deep core readers (path, sensitive, observability, util) would pick them up.\n// That made the environment a hidden mutable config bus. Instead, cli.ts\n// assigns onto `cli` once at startup and each reader consults it first, falling\n// back to the operator's environment. This module deliberately has zero imports\n// so any core module can read it without a cycle.\n\n/**\n * How an operator gives this server a root. Lives here rather than beside its\n * readers because both ends of the repo need it — `index.ts` prints it at\n * startup, `list_roots` returns it when it has nothing to list — and this\n * module is the one place either can import without a cycle.\n */\nexport const NO_POSITIONAL_ROOTS_GUIDANCE =\n  'No positional directories specified. Configure roots with directory arguments, FS_ALLOWED_DIRS, or --allow-cwd. Modern clients with elicitation can also call a tool with a concrete path and approve the requested grant.';\n\nexport interface CliOverrides {\n  /** `--log-level` */\n  logLevel?: string;\n  /** `--max-file-size` (raw string; validated by the reader like the env var) */\n  maxFileSize?: string;\n  /** `--root-boundary` */\n  rootBoundary?: string;\n  /** `--allow-sensitive` */\n  allowSensitive?: boolean;\n  /** `--walk-cwd` */\n  allowCwdWalk?: boolean;\n  /** `--allow-missing-roots` */\n  allowMissingRoots?: boolean;\n  /** `--deny` entries (merged with FS_DENYLIST by the reader) */\n  denyPatterns?: readonly string[];\n  /** `--allow` entries (merged with FS_ALLOWLIST by the reader; relieve built-ins only) */\n  allowPatterns?: readonly string[];\n}\n\n/** Written once by cli.ts; an absent key means \"not set on the command line\". */\nexport const cli: CliOverrides = {};\n"]}

package/dist/core/cursor.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"cursor.d.ts","sourceRoot":"","sources":["../../src/core/cursor.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAgB,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAgClE;;;;GAIG;AACH,MAAM,WAAW,YAAY,CAAC,CAAC,EAAE,CAAC;IAChC,QAAQ,CAAC,KAAK,EAAE,SAAS,CAAC,EAAE,CAAC;IAC7B,QAAQ,CAAC,QAAQ,EAAE,CAAC,CAAC;IACrB,QAAQ,CAAC,SAAS,EAAE,OAAO,CAAC;CAC7B;AAED,UAAU,IAAI,CAAC,CAAC,EAAE,CAAC;IACjB,QAAQ,CAAC,IAAI,EAAE,SAAS,CAAC,EAAE,CAAC;IAC5B,QAAQ,CAAC,QAAQ,EAAE,CAAC,CAAC;IACrB,QAAQ,CAAC,UAAU,EAAE,MAAM,GAAG,SAAS,CAAC;IACxC;;;;OAIG;IACH,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC;CACzB;AAED,MAAM,WAAW,aAAa,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAE,SAAQ,IAAI,CAAC,CAAC,EAAE,CAAC,CAAC;IACxD,4EAA4E;IAC5E,QAAQ,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC;CACvB;AAED;;;;;;;;;;;GAWG;AACH,wBAAsB,QAAQ,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,MAAM,EAAE;IAC9C,KAAK,EAAE,iBAAiB,CAAC;IACzB,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,MAAM,GAAG,SAAS,CAAC;IAC3B,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,MAAM,OAAO,CAAC,YAAY,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IAC3C,WAAW,CAAC,EAAE,CAAC,CAAC,KAAK,EAAE,SAAS,CAAC,EAAE,EAAE,QAAQ,EAAE,CAAC,KAAK,CAAC,CAAC,GAAG,SAAS,CAAC;CACrE,GAAG,OAAO,CAAC,aAAa,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,CA+BlC"}

package/dist/core/cursor.js

@@ -1,3 +1,4 @@
+import { ErrorCode, isFsError } from "./errors.js";
 import { invalidCursor } from "./store.js";
 function encodePageCursor(cursor) {
     return Buffer.from(JSON.stringify(cursor)).toString('base64url');
@@ -46,7 +47,16 @@ export async function paginate(params) {
         }), 0, params.pageSize, { items, metadata });
     if (!incomplete || params.externalize === undefined)
         return first;
-    return { ...first, resource: params.externalize(produced.items, produced.metadata) };
+    try {
+        return { ...first, resource: params.externalize(produced.items, produced.metadata) };
+    }
+    catch (error) {
+        // The store refuses an entry over its byte cap. The page itself is
+        // fine; the caller simply gets no full-set resource for this query.
+        if (isFsError(error) && error.code === ErrorCode.TOO_LARGE)
+            return first;
+        throw error;
+    }
 }
 function decodePageCursor(cursor) {
     try {

package/dist/core/cursor.js.map

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A tool that reports\n   * progress in its text needs it: without it every page can only say how many\n   * rows it holds, which is the same number on page 1 and page 9.\n   */\n  readonly offset: number;\n}\n\nexport interface PaginatedPage<T, M, R> extends Page<T, M> {\n  /** The externalized full set. First page only, and only when incomplete. */\n  readonly resource?: R;\n}\n\n/**\n * The one replay-or-produce branch every paged tool runs. A cursor replays a\n * stored snapshot; without one, `produce` runs the query and its result is\n * snapshotted for later pages.\n *\n * The response is incomplete when the set spans more than one page or the\n * engine truncated it. Then — and only on the first page — `externalize`\n * stores the full set and its handle rides back as `resource`. Replayed pages\n * never carry it: the stored entry expires on the resource store's own TTL and\n * LRU, not this snapshot's, so replaying its URI would hand back a dead\n * pointer. Nor do they mint a new one; the set was already stored whole.\n */\nexport async function paginate<T, M, R>(params: {\n  store: PageSnapshotStore;\n  queryKey: string;\n  cursor: string | undefined;\n  pageSize: number;\n  produce: () => Promise<ProducedPage<T, M>>;\n  externalize?: ((items: readonly T[], metadata: M) => R) | undefined;\n}): Promise<PaginatedPage<T, M, R>> {\n  if (params.cursor !== undefined) {\n    const decoded = decodePageCursor(params.cursor);\n    const snapshot = params.store.read<T, M>(decoded.snapshotId, params.queryKey);\n    return pageResult(decoded.snapshotId, decoded.offset, params.pageSize, snapshot);\n  }\n  const produced = await params.produce();\n  const { items, metadata } = produced;\n  const incomplete = items.length > params.pageSize || produced.truncated;\n  const first: Page<T, M> =\n    items.length <= params.pageSize\n      ? { page: items, metadata, nextCursor: undefined, offset: 0 }\n      : pageResult(\n          params.store.create({\n            queryKey: params.queryKey,\n            items,\n            metadata,\n          }),\n          0,\n          params.pageSize,\n          { items, metadata },\n        );\n  if (!incomplete || params.externalize === undefined) return first;\n  return { ...first, resource: params.externalize(produced.items, produced.metadata) };\n}\n\nfunction decodePageCursor(cursor: string): PageCursor {\n  try {\n    const text = Buffer.from(cursor, 'base64url').toString('utf-8');\n    const parsed = JSON.parse(text) as { snapshotId?: unknown; offset?: unknown };\n    if (\n      typeof parsed.snapshotId === 'string' &&\n      parsed.snapshotId.length > 0 &&\n      typeof parsed.offset === 'number' &&\n      Number.isInteger(parsed.offset) &&\n      parsed.offset >= 0\n    ) {\n      return { snapshotId: parsed.snapshotId, offset: parsed.offset };\n    }\n    throw new Error('Invalid page cursor');\n  } catch {\n    throw invalidCursor();\n  }\n}\n"]}
+{"version":3,"file":"cursor.js","sourceRoot":"","sources":["../../src/core/cursor.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAEnD,OAAO,EAAE,aAAa,EAAE,MAAM,YAAY,CAAC;AAO3C,SAAS,gBAAgB,CAAC,MAAkB;IAC1C,OAAO,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,QAAQ,CAAC,WAAW,CAAC,CAAC;AACnE,CAAC;AAED,SAAS,UAAU,CACjB,UAAkB,EAClB,MAAc,EACd,QAAgB,EAChB,QAA4B;IAE5B,IAAI,MAAM,IAAI,QAAQ,CAAC,KAAK,CAAC,MAAM;QAAE,MAAM,aAAa,EAAE,CAAC;IAC3D,MAAM,IAAI,GAAG,QAAQ,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,EAAE,MAAM,GAAG,QAAQ,CAAC,CAAC;IAC7D,MAAM,UAAU,GAAG,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC;IACxC,OAAO;QACL,IAAI;QACJ,QAAQ,EAAE,QAAQ,CAAC,QAAQ;QAC3B,MAAM;QACN,UAAU,EACR,UAAU,GAAG,QAAQ,CAAC,KAAK,CAAC,MAAM;YAChC,CAAC,CAAC,gBAAgB,CAAC,EAAE,UAAU,EAAE,MAAM,EAAE,UAAU,EAAE,CAAC;YACtD,CAAC,CAAC,SAAS;KAChB,CAAC;AACJ,CAAC;AA8BD;;;;;;;;;;;GAWG;AACH,MAAM,CAAC,KAAK,UAAU,QAAQ,CAAU,MAOvC;IACC,IAAI,MAAM,CAAC,MAAM,KAAK,SAAS,EAAE,CAAC;QAChC,MAAM,OAAO,GAAG,gBAAgB,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;QAChD,MAAM,QAAQ,GAAG,MAAM,CAAC,KAAK,CAAC,IAAI,CAAO,OAAO,CAAC,UAAU,EAAE,MAAM,CAAC,QAAQ,CAAC,CAAC;QAC9E,OAAO,UAAU,CAAC,OAAO,CAAC,UAAU,EAAE,OAAO,CAAC,MAAM,EAAE,MAAM,CAAC,QAAQ,EAAE,QAAQ,CAAC,CAAC;IACnF,CAAC;IACD,MAAM,QAAQ,GAAG,MAAM,MAAM,CAAC,OAAO,EAAE,CAAC;IACxC,MAAM,EAAE,KAAK,EAAE,QAAQ,EAAE,GAAG,QAAQ,CAAC;IACrC,MAAM,UAAU,GAAG,KAAK,CAAC,MAAM,GAAG,MAAM,CAAC,QAAQ,IAAI,QAAQ,CAAC,SAAS,CAAC;IACxE,MAAM,KAAK,GACT,KAAK,CAAC,MAAM,IAAI,MAAM,CAAC,QAAQ;QAC7B,CAAC,CAAC,EAAE,IAAI,EAAE,KAAK,EAAE,QAAQ,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,EAAE,CAAC,EAAE;QAC7D,CAAC,CAAC,UAAU,CACR,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC;YAClB,QAAQ,EAAE,MAAM,CAAC,QAAQ;YACzB,KAAK;YACL,QAAQ;SACT,CAAC,EACF,CAAC,EACD,MAAM,CAAC,QAAQ,EACf,EAAE,KAAK,EAAE,QAAQ,EAAE,CACpB,CAAC;IACR,IAAI,CAAC,UAAU,IAAI,MAAM,CAAC,WAAW,KAAK,SAAS;QAAE,OAAO,KAAK,CAAC;IAClE,IAAI,CAAC;QACH,OAAO,EAAE,GAAG,KAAK,EAAE,QAAQ,EAAE,MAAM,CAAC,WAAW,CAAC,QAAQ,CAAC,KAAK,EAAE,QAAQ,CAAC,QAAQ,CAAC,EAAE,CAAC;IACvF,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,mEAAmE;QACnE,oEAAoE;QACpE,IAAI,SAAS,CAAC,KAAK,CAAC,IAAI,KAAK,CAAC,IAAI,KAAK,SAAS,CAAC,SAAS;YAAE,OAAO,KAAK,CAAC;QACzE,MAAM,KAAK,CAAC;IACd,CAAC;AACH,CAAC;AAED,SAAS,gBAAgB,CAAC,MAAc;IACtC,IAAI,CAAC;QACH,MAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC;QAChE,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAA+C,CAAC;QAC9E,IACE,OAAO,MAAM,CAAC,UAAU,KAAK,QAAQ;YACrC,MAAM,CAAC,UAAU,CAAC,MAAM,GAAG,CAAC;YAC5B,OAAO,MAAM,CAAC,MAAM,KAAK,QAAQ;YACjC,MAAM,CAAC,SAAS,CAAC,MAAM,CAAC,MAAM,CAAC;YAC/B,MAAM,CAAC,MAAM,IAAI,CAAC,EAClB,CAAC;YACD,OAAO,EAAE,UAAU,EAAE,MAAM,CAAC,UAAU,EAAE,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,CAAC;QAClE,CAAC;QACD,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAC;IACzC,CAAC;IAAC,MAAM,CAAC;QACP,MAAM,aAAa,EAAE,CAAC;IACxB,CAAC;AACH,CAAC","sourcesContent":["import { ErrorCode, isFsError } from './errors.ts';\nimport type { PageSnapshot, PageSnapshotStore } from './store.ts';\nimport { invalidCursor } from './store.ts';\n\ninterface PageCursor {\n  readonly snapshotId: string;\n  readonly offset: number;\n}\n\nfunction encodePageCursor(cursor: PageCursor): string {\n  return Buffer.from(JSON.stringify(cursor)).toString('base64url');\n}\n\nfunction pageResult<T, M>(\n  snapshotId: string,\n  offset: number,\n  pageSize: number,\n  snapshot: PageSnapshot<T, M>,\n): Page<T, M> {\n  if (offset >= snapshot.items.length) throw invalidCursor();\n  const page = snapshot.items.slice(offset, offset + pageSize);\n  const nextOffset = offset + page.length;\n  return {\n    page,\n    metadata: snapshot.metadata,\n    offset,\n    nextCursor:\n      nextOffset < snapshot.items.length\n        ? encodePageCursor({ snapshotId, offset: nextOffset })\n        : undefined,\n  };\n}\n\n/**\n * The full result set a paged tool produced, before slicing. `truncated` is the\n * engine's own stop state — the hard result cap or a timeout cut the set — and\n * says nothing about page size.\n */\nexport interface ProducedPage<T, M> {\n  readonly items: readonly T[];\n  readonly metadata: M;\n  readonly truncated: boolean;\n}\n\ninterface Page<T, M> {\n  readonly page: readonly T[];\n  readonly metadata: M;\n  readonly nextCursor: string | undefined;\n  /**\n   * Index of this page's first item in the full set. A tool that reports\n   * progress in its text needs it: without it every page can only say how many\n   * rows it holds, which is the same number on page 1 and page 9.\n   */\n  readonly offset: number;\n}\n\nexport interface PaginatedPage<T, M, R> extends Page<T, M> {\n  /** The externalized full set. First page only, and only when incomplete. */\n  readonly resource?: R;\n}\n\n/**\n * The one replay-or-produce branch every paged tool runs. A cursor replays a\n * stored snapshot; without one, `produce` runs the query and its result is\n * snapshotted for later pages.\n *\n * The response is incomplete when the set spans more than one page or the\n * engine truncated it. Then — and only on the first page — `externalize`\n * stores the full set and its handle rides back as `resource`. Replayed pages\n * never carry it: the stored entry expires on the resource store's own TTL and\n * LRU, not this snapshot's, so replaying its URI would hand back a dead\n * pointer. Nor do they mint a new one; the set was already stored whole.\n */\nexport async function paginate<T, M, R>(params: {\n  store: PageSnapshotStore;\n  queryKey: string;\n  cursor: string | undefined;\n  pageSize: number;\n  produce: () => Promise<ProducedPage<T, M>>;\n  externalize?: ((items: readonly T[], metadata: M) => R) | undefined;\n}): Promise<PaginatedPage<T, M, R>> {\n  if (params.cursor !== undefined) {\n    const decoded = decodePageCursor(params.cursor);\n    const snapshot = params.store.read<T, M>(decoded.snapshotId, params.queryKey);\n    return pageResult(decoded.snapshotId, decoded.offset, params.pageSize, snapshot);\n  }\n  const produced = await params.produce();\n  const { items, metadata } = produced;\n  const incomplete = items.length > params.pageSize || produced.truncated;\n  const first: Page<T, M> =\n    items.length <= params.pageSize\n      ? { page: items, metadata, nextCursor: undefined, offset: 0 }\n      : pageResult(\n          params.store.create({\n            queryKey: params.queryKey,\n            items,\n            metadata,\n          }),\n          0,\n          params.pageSize,\n          { items, metadata },\n        );\n  if (!incomplete || params.externalize === undefined) return first;\n  try {\n    return { ...first, resource: params.externalize(produced.items, produced.metadata) };\n  } catch (error) {\n    // The store refuses an entry over its byte cap. The page itself is\n    // fine; the caller simply gets no full-set resource for this query.\n    if (isFsError(error) && error.code === ErrorCode.TOO_LARGE) return first;\n    throw error;\n  }\n}\n\nfunction decodePageCursor(cursor: string): PageCursor {\n  try {\n    const text = Buffer.from(cursor, 'base64url').toString('utf-8');\n    const parsed = JSON.parse(text) as { snapshotId?: unknown; offset?: unknown };\n    if (\n      typeof parsed.snapshotId === 'string' &&\n      parsed.snapshotId.length > 0 &&\n      typeof parsed.offset === 'number' &&\n      Number.isInteger(parsed.offset) &&\n      parsed.offset >= 0\n    ) {\n      return { snapshotId: parsed.snapshotId, offset: parsed.offset };\n    }\n    throw new Error('Invalid page cursor');\n  } catch {\n    throw invalidCursor();\n  }\n}\n"]}

package/dist/core/diff.d.ts

@@ -1,6 +1,19 @@
-export declare function computeDiffStats(original: string, modified: string): {
+/**
+ * Wall-clock bound for one Myers diff. The algorithm is synchronous and
+ * quadratic in differing lines (8k changed lines ≈ 11 s), and neither the tool
+ * timeout nor the abort signal can interrupt it. Past the deadline the `diff`
+ * package returns `undefined`; callers degrade (no preview / no counts) instead
+ * of freezing the process.
+ */
+export declare const DIFF_TIMEOUT_MS = 1000;
+export declare function computeDiffStats(original: string, modified: string, timeoutMs?: number): {
+    linesAdded: number;
+    linesRemoved: number;
+} | undefined;
+export declare function unifiedPatch(label: string, original: string, modified: string, timeoutMs?: number): string | undefined;
+/** Added/removed line counts read off a unified patch — no second diff pass. */
+export declare function diffStatsFromPatch(patch: string): {
     linesAdded: number;
     linesRemoved: number;
 };
-export declare function unifiedPatch(label: string, original: string, modified: string): string;
 //# sourceMappingURL=diff.d.ts.map

package/dist/core/diff.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"diff.d.ts","sourceRoot":"","sources":["../../src/core/diff.ts"],"names":[],"mappings":"AAKA;;;;;;GAMG;AACH,eAAO,MAAM,eAAe,OAAO,CAAC;AAEpC,wBAAgB,gBAAgB,CAC9B,QAAQ,EAAE,MAAM,EAChB,QAAQ,EAAE,MAAM,EAChB,SAAS,SAAkB,GAC1B;IAAE,UAAU,EAAE,MAAM,CAAC;IAAC,YAAY,EAAE,MAAM,CAAA;CAAE,GAAG,SAAS,CAU1D;AAED,wBAAgB,YAAY,CAC1B,KAAK,EAAE,MAAM,EACb,QAAQ,EAAE,MAAM,EAChB,QAAQ,EAAE,MAAM,EAChB,SAAS,SAAkB,GAC1B,MAAM,GAAG,SAAS,CAIpB;AAED,gFAAgF;AAChF,wBAAgB,kBAAkB,CAAC,KAAK,EAAE,MAAM,GAAG;IAAE,UAAU,EAAE,MAAM,CAAC;IAAC,YAAY,EAAE,MAAM,CAAA;CAAE,CAgB9F"}

package/dist/core/diff.js

@@ -1,11 +1,21 @@
 import { createTwoFilesPatch, diffLines } from 'diff';
 // Unified-diff computation over two text buffers. Kept out of `fmt.ts`, which
 // formats terminal output and has no business pulling in the `diff` package.
-export function computeDiffStats(original, modified) {
-    // diffLines returns the change list synchronously on diff v9.
+/**
+ * Wall-clock bound for one Myers diff. The algorithm is synchronous and
+ * quadratic in differing lines (8k changed lines ≈ 11 s), and neither the tool
+ * timeout nor the abort signal can interrupt it. Past the deadline the `diff`
+ * package returns `undefined`; callers degrade (no preview / no counts) instead
+ * of freezing the process.
+ */
+export const DIFF_TIMEOUT_MS = 1000;
+export function computeDiffStats(original, modified, timeoutMs = DIFF_TIMEOUT_MS) {
+    const parts = diffLines(original, modified, { timeout: timeoutMs });
+    if (parts === undefined)
+        return undefined;
     let linesAdded = 0;
     let linesRemoved = 0;
-    for (const part of diffLines(original, modified)) {
+    for (const part of parts) {
         if (part.added)
             linesAdded += part.count;
         else if (part.removed)
@@ -13,9 +23,30 @@ export function computeDiffStats(original, modified) {
     }
     return { linesAdded, linesRemoved };
 }
-// createTwoFilesPatch returns the unified diff string synchronously on diff v9
-// (the { callback } option fires via setTimeout and returns undefined).
-export function unifiedPatch(label, original, modified) {
-    return createTwoFilesPatch(label, label, original, modified, 'Original', 'Modified');
+export function unifiedPatch(label, original, modified, timeoutMs = DIFF_TIMEOUT_MS) {
+    return createTwoFilesPatch(label, label, original, modified, 'Original', 'Modified', {
+        timeout: timeoutMs,
+    });
+}
+/** Added/removed line counts read off a unified patch — no second diff pass. */
+export function diffStatsFromPatch(patch) {
+    let linesAdded = 0;
+    let linesRemoved = 0;
+    // The file header (---/+++) precedes the first hunk; only hunk bodies count,
+    // so a content line that itself starts with -- or ++ is never mistaken for it.
+    let inHunk = false;
+    for (const line of patch.split('\n')) {
+        if (line.startsWith('@@')) {
+            inHunk = true;
+            continue;
+        }
+        if (!inHunk)
+            continue;
+        if (line.startsWith('+'))
+            linesAdded++;
+        else if (line.startsWith('-'))
+            linesRemoved++;
+    }
+    return { linesAdded, linesRemoved };
 }
 //# sourceMappingURL=diff.js.map

package/dist/core/diff.js.map

@@ -1 +1 @@
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package/dist/core/errors.d.ts

@@ -1,4 +1,3 @@
-import { ProtocolErrorCode } from '@modelcontextprotocol/server';
 export declare const ErrorCode: {
     readonly ACCESS_DENIED: "ACCESS_DENIED";
     readonly NOT_FOUND: "NOT_FOUND";
@@ -32,15 +31,15 @@ export declare const Problem: {
     readonly fromUnknown: (error: unknown, defaultCode: ErrorCode, path?: string) => Problem;
     readonly toText: (error: unknown, defaultCode: ErrorCode) => string;
 };
-export declare const ERRNO_MAP: Readonly<Record<string, ErrorCode>>;
 export declare const SKIPPABLE_FS_CODES: ReadonlySet<ErrorCode>;
-export declare const SKIPPABLE_ERRNOS: ReadonlySet<string>;
+/** The scan's facts as a Problem: an abort wins, then a timeout, then errno. */
+export declare function classifyCauseChain(error: unknown): Problem;
 export declare function isFsError(error: unknown): error is FsError;
-/** FsError traces to a caller-supplied argument; anything else is server-side. */
-export declare function fsErrorCode(error: unknown): ProtocolErrorCode;
 export declare function isNodeError(error: unknown): error is NodeJS.ErrnoException;
 /** True when `error` is a Node errno error with code `ENOENT` (path not found). */
 export declare function isNotFoundErrno(error: unknown): error is NodeJS.ErrnoException;
+/** True when `error` is a Node errno error whose code is in `SKIPPABLE_ERRNOS`. */
+export declare function isSkippableErrno(error: unknown): error is NodeJS.ErrnoException;
 /**
  * Rethrow when `error` reads as cancelled. Answers the question directly rather
  * than through `classify`, which allocated a Problem — and ran

package/dist/core/errors.d.ts.map

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