@j0hanz/filesystem-mcp 2.2.0 → 2.4.0

package/README.md

@@ -23,7 +23,7 @@ Filesystem-MCP is a [Model Context Protocol](https://modelcontextprotocol.io) se
 | **Path guarding**      | Every path is validated against allowed roots; `.env`, `*.pem`, `*id_rsa*` and similar patterns are denied |
 | **Filesystem tools**   | Navigate, inspect, read, and write across all major file operations                                        |
 | **Batch operations**   | Most tools accept `path`, `paths[]`, or `files[]` for parallel execution                                   |
-| **Dual transport**     | stdio by default; `--port` enables Streamable HTTP                                                         |
+| **Dual transport**     | stdio by default; `--port` enables Streamable HTTP for both 2025-era and 2026-07-28 clients                |
 | **File subscriptions** | Resource subscriptions push change notifications when watched files update                                 |
 | **Regex safety**       | RE2 in all search tools: linear-time matching, so no pattern can ReDoS the server                          |
 
@@ -231,14 +231,14 @@ All tools are scoped to the configured roots. Call `list_roots` first to discove
 
 #### Write
 
-| Tool           | Description                                                                                       |
-| :------------- | :------------------------------------------------------------------------------------------------ |
-| `create`       | Create one or more files, overwriting existing content and creating parent directories as needed. |
-| `edit`         | Apply sequential literal string replacements to one or more files (max 5 per call).               |
-| `move`         | Move, rename, or copy (`copy: true`) one or more files/directories to explicit destinations.      |
-| `delete`       | Permanently delete one or more files or directories. This action is irreversible.                 |
-| `replace_text` | Bulk search-and-replace across files matching a glob pattern.                                     |
-| `patch`        | Apply a single-file unified diff and write the result.                                            |
+| Tool           | Description                                                                                                                                                                                                          |
+| :------------- | :------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
+| `create`       | Create one or more files, creating parent directories as needed. An existing file prompts the user to confirm the overwrite; `overwrite: true` on an entry skips the prompt, `append: true` adds to the end instead. |
+| `edit`         | Apply sequential literal string replacements to one or more files (max 5 per call).                                                                                                                                  |
+| `move`         | Move, rename, or copy (`copy: true`) one or more files/directories to explicit destinations.                                                                                                                         |
+| `delete`       | Permanently delete one or more files or directories. This action is irreversible.                                                                                                                                    |
+| `replace_text` | Bulk search-and-replace across files matching a glob pattern.                                                                                                                                                        |
+| `patch`        | Apply a single-file unified diff and write the result.                                                                                                                                                               |
 
 ### Resources
 
@@ -298,6 +298,12 @@ concrete path and approving the elicitation-backed grant. `list_roots` reports
 the roots already configured or accepted; it cannot discover an unknown
 workspace by itself.
 
+Over HTTP, 2025-era clients are served statelessly: tools, resources and
+prompts work. Confirmations (recursive delete, overwrite, access grants) need a
+2026-07-28 client or stdio and answer with a tool error saying so; file
+subscriptions are not advertised on that leg, and a `resources/subscribe` sent
+anyway is refused with method-not-found.
+
 ### Recommended global recipes
 
 #### VS Code / Cursor / Claude Code (primary recipe)
@@ -354,24 +360,28 @@ filesystem-mcp /path/to/project1 /path/to/project2
 
 #### CLI flags
 
-| Flag                      | Default | Purpose                                                                            |
-| :------------------------ | :------ | :--------------------------------------------------------------------------------- |
-| `[dirs...]`               | —       | One or more allowed root directories (positional)                                  |
-| `--allow-cwd`             | `false` | Also allow the current working directory as a root                                 |
-| `--walk-cwd`              | `false` | Walk up from CWD to find a project root; implies `--allow-cwd`                     |
-| `--allow-missing-roots`   | `false` | Start even if configured allowed directories do not exist                          |
-| `--port <n>`              | —       | Enable Streamable HTTP transport on the given port (env: `FS_PORT`)                |
-| `--http-host <host>`      | —       | HTTP server bind address (env: `FS_HTTP_HOST`)                                     |
-| `--api-key <key>`         | —       | Require this API key on HTTP requests (env: `FS_API_KEY`)                          |
-| `--read-only`             | `false` | Disable write tools: `create`, `edit`, `delete`, `move`, `patch`, `replace_text`   |
-| `--safe`                  | `false` | Alias for `--read-only`                                                            |
-| `--deny <pattern>`        | —       | Block paths matching this pattern; repeatable                                      |
-| `--allow-sensitive`       | `false` | Allow access to sensitive system paths (env: `FS_ALLOW_SENSITIVE`)                 |
-| `--root-boundary <path>`  | —       | Require all allowed roots to fall under this path (env: `FS_ROOT_BOUNDARY`)        |
-| `--max-file-size <bytes>` | —       | Maximum file size for reads in bytes (env: `FS_MAX_FILE_SIZE`)                     |
-| `--log-level <level>`     | `info`  | RFC 5424 log level, `debug` through `emergency` (env: `FS_LOG_LEVEL`)              |
-| `--print-config`          | `false` | Print the active configuration and exit (use `--json` for machine-readable output) |
-| `--json`                  | `false` | Output `--print-config` as JSON                                                    |
+| Flag                      | Default | Purpose                                                                                                                               |
+| :------------------------ | :------ | :------------------------------------------------------------------------------------------------------------------------------------ |
+| `[dirs...]`               | —       | One or more allowed root directories (positional)                                                                                     |
+| `--allow-cwd`             | `false` | Also allow the current working directory as a root                                                                                    |
+| `--walk-cwd`              | `false` | Walk up from CWD to find a project root; implies `--allow-cwd`                                                                        |
+| `--allow-missing-roots`   | `false` | Start even if configured allowed directories do not exist                                                                             |
+| `--port <n>`              | —       | Enable Streamable HTTP transport on the given port (env: `FS_PORT`)                                                                   |
+| `--http-host <host>`      | —       | HTTP server bind address (env: `FS_HTTP_HOST`)                                                                                        |
+| `--api-key <key>`         | —       | Require this API key on HTTP requests (env: `FS_API_KEY`)                                                                             |
+| `--read-only`             | `false` | Disable write tools: `create`, `edit`, `delete`, `move`, `patch`, `replace_text`                                                      |
+| `--deny <pattern>`        | —       | Block paths matching this pattern; repeatable                                                                                         |
+| `--allow <pattern>`       | —       | Exempt a pattern from the built-in sensitive denylist; repeatable (env: `FS_ALLOWLIST`). Does not lift `--deny`/`FS_DENYLIST` entries |
+| `--allow-sensitive`       | `false` | Allow access to sensitive system paths (env: `FS_ALLOW_SENSITIVE`)                                                                    |
+| `--root-boundary <path>`  | —       | Require all allowed roots to fall under this path (env: `FS_ROOT_BOUNDARY`)                                                           |
+| `--max-file-size <bytes>` | —       | Maximum file size for reads in bytes (env: `FS_MAX_FILE_SIZE`)                                                                        |
+| `--log-level <level>`     | `info`  | RFC 5424 log level, `debug` through `emergency` (env: `FS_LOG_LEVEL`)                                                                 |
+| `--print-config`          | `false` | Print the active configuration as JSON and exit                                                                                       |
+
+`--deny` and `--allow` patterns support `*` (any run within a segment),
+`**` (any run of segments), `?`, `[...]` classes, and `{a,b}` alternation.
+Dot-leading (hidden) names match like any other — `secrets/**` denies
+`secrets/.env`, `*id_rsa*` denies `.id_rsa`.
 
 #### Environment variables
 
@@ -387,6 +397,7 @@ Flags take precedence when both are set.
 | `FS_ALLOW_MISSING_ROOTS`      | Start even if configured directories do not exist (mirrors `--allow-missing-roots`).                                                                                                   |
 | `FS_ALLOW_SENSITIVE`          | Allow access to sensitive system paths (mirrors `--allow-sensitive`).                                                                                                                  |
 | `FS_DENYLIST`                 | Comma-separated list of paths or patterns to block (mirrors `--deny`).                                                                                                                 |
+| `FS_ALLOWLIST`                | Comma-separated patterns exempted from the built-in sensitive denylist (mirrors `--allow`). Never lifts `FS_DENYLIST`/`--deny` entries.                                                |
 | `FS_MAX_FILE_SIZE`            | Maximum file size for reads in bytes (mirrors `--max-file-size`).                                                                                                                      |
 | `FS_LOG_LEVEL`                | RFC 5424 log level: `debug`, `info`, `notice`, `warn`/`warning`, `error`, `critical`, `alert`, or `emergency` (mirrors `--log-level`).                                                 |
 | `FS_PORT`                     | Start the Streamable HTTP transport on this port; unset = stdio (mirrors `--port`).                                                                                                    |
@@ -398,12 +409,7 @@ Flags take precedence when both are set.
 | `FS_ALLOW_UNRESTRICTED_HOSTS` | Bind a wildcard host with no Host validation (accepts the risk).                                                                                                                       |
 | `FS_PUBLIC_URL`               | Resource identifier URL for RFC 9728 discovery.                                                                                                                                        |
 | `FS_RATE_LIMIT_RPM`           | Per-client-IP requests/minute (default 120 with API-key authentication, 6,000 for keyless loopback; range 1–100000).                                                                   |
-| `FS_MAX_REQUEST_BYTES`        | Max HTTP request body bytes (default 4194304, 1024–268435456).                                                                                                                         |
-| `FS_KEEPALIVE_TIMEOUT_MS`     | HTTP keep-alive timeout in ms; set above any fronting proxy's idle timeout (default 5000, 1000–600000).                                                                                |
 | `FS_MAX_WATCHERS`             | Max concurrent file watchers (default 256, 1–4096).                                                                                                                                    |
-| `FS_MAX_INLINE_MATCHES`       | Deprecated and ignored; `maxResults` sets the `search_text` page size. Logs a warning when set; removed in the next major.                                                             |
-| `FS_MAX_READ_MANY_BYTES`      | Max total bytes across a batched `read` (default 524288, 10240–104857600).                                                                                                             |
-| `FS_SEARCH_TIMEOUT_MS`        | Search timeout in ms (default 5000, 100–60000).                                                                                                                                        |
 | `NO_COLOR`                    | Any value disables ANSI color output.                                                                                                                                                  |
 | `FS_REQUEST_STATE_KEY`        | HMAC key sealing `input_required` requestState across retry rounds. Optional (random per boot if unset); set it, at >=32 bytes UTF-8, to keep in-flight rounds alive across a restart. |
 

package/dist/cli-help.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"cli-help.d.ts","sourceRoot":"","sources":["../src/cli-help.ts"],"names":[],"mappings":"AAgJA,wBAAgB,gBAAgB,IAAI,KAAK,CAkCxC;AAED,wBAAgB,mBAAmB,IAAI,KAAK,CAG3C"}
+{"version":3,"file":"cli-help.d.ts","sourceRoot":"","sources":["../src/cli-help.ts"],"names":[],"mappings":"AAmIA,wBAAgB,gBAAgB,IAAI,KAAK,CA4BxC;AAED,wBAAgB,mBAAmB,IAAI,KAAK,CAG3C"}

package/dist/cli-help.js

@@ -1,6 +1,6 @@
+import { styleText } from 'node:util';
 import packageJson from '../package.json' with { type: 'json' };
-import { cliFmt, padEndVisible } from './core/fmt.js';
-import { MUTATING_TOOL_NAMES } from './tools/index.js';
+import { MUTATING_TOOL_NAMES } from "./tools/index.js";
 // Help text and its rendering. Split out of cli.ts so that module holds only
 // argument parsing and directory validation: this file is static copy plus a
 // formatter, and shares no state with the parser.
@@ -17,12 +17,7 @@ const OPTIONS_HELP = [
         flags: '--read-only',
         desc: `Disable write tools: ${[...MUTATING_TOOL_NAMES].sort().join(', ')}`,
     },
-    { flags: '--safe', desc: 'Alias for --read-only' },
-    {
-        flags: '--print-config',
-        desc: 'Print the active configuration and exit (use with --json for machine output)',
-    },
-    { flags: '--json', desc: 'Output --print-config as JSON' },
+    { flags: '--print-config', desc: 'Print the active configuration as JSON and exit' },
     {
         flags: '--log-level <level>',
         desc: 'Log level, RFC 5424: debug|info|notice|warn|error|critical|alert|emergency (env: FS_LOG_LEVEL)',
@@ -46,6 +41,10 @@ const OPTIONS_HELP = [
     },
     { flags: '--walk-cwd', desc: 'Walk up from CWD to find a project root; implies --allow-cwd' },
     { flags: '--deny <pattern>', desc: 'Block paths matching this pattern; repeatable' },
+    {
+        flags: '--allow <pattern>',
+        desc: 'Exempt a pattern from the built-in sensitive denylist; repeatable (env: FS_ALLOWLIST)',
+    },
     {
         flags: '--allow-missing-roots',
         desc: 'Start even if configured allowed directories do not exist',
@@ -78,6 +77,10 @@ const ENV_HELP = [
         desc: 'Walk up from CWD to find a project root ("true" or "1" enables this)',
     },
     { flags: 'FS_DENYLIST', desc: 'Paths/patterns to block, comma-separated' },
+    {
+        flags: 'FS_ALLOWLIST',
+        desc: 'Patterns exempted from the built-in sensitive denylist, comma-separated; --deny/FS_DENYLIST still win',
+    },
     {
         flags: 'FS_ALLOW_MISSING_ROOTS',
         desc: 'Start even if configured allowed directories do not exist ("true" or "1" enables this)',
@@ -96,27 +99,10 @@ const ENV_HELP = [
         flags: 'FS_RATE_LIMIT_RPM',
         desc: 'Per-client-IP requests/min (default 120 authenticated, 6000 keyless loopback; 1–100000)',
     },
-    {
-        flags: 'FS_MAX_REQUEST_BYTES',
-        desc: 'Max HTTP request body bytes (default 4194304, 1024–268435456)',
-    },
-    {
-        flags: 'FS_KEEPALIVE_TIMEOUT_MS',
-        desc: 'HTTP keep-alive timeout; set above any fronting proxy idle timeout (default 5000, 1000–600000)',
-    },
     {
         flags: 'FS_MAX_WATCHERS',
         desc: 'Max concurrent file watchers (default 256, 1–4096)',
     },
-    {
-        flags: 'FS_MAX_INLINE_MATCHES',
-        desc: 'Deprecated and ignored; maxResults sets the search_text page size. Removed in the next major',
-    },
-    {
-        flags: 'FS_MAX_READ_MANY_BYTES',
-        desc: 'Max total bytes across one batch read (default 524288, 10240–104857600)',
-    },
-    { flags: 'FS_SEARCH_TIMEOUT_MS', desc: 'Search timeout in ms (default 5000, 100–60000)' },
     { flags: 'NO_COLOR', desc: 'Any value disables ANSI color output' },
     {
         flags: 'FS_REQUEST_STATE_KEY',
@@ -129,31 +115,26 @@ const EXAMPLES_HELP = [
     '$ filesystem-mcp /project/src /project/tests --allow-cwd',
     '$ filesystem-mcp --port 3000 /path/to/allowed/dir',
     '$ filesystem-mcp --read-only /data/readonly',
-    '$ filesystem-mcp --print-config --json /project',
+    '$ filesystem-mcp --print-config /project',
 ];
 export function printHelpAndExit() {
-    const { bold, dim, section, flag, placeholder, cyan } = cliFmt;
     const COL = 27;
-    const optRow = (flags, desc) => {
-        const colored = flags
-            .replace(/<[^>]+>/g, (m) => placeholder(m))
-            .replace(/-{1,2}[\w-]+/g, (m) => flag(m));
-        return `  ${padEndVisible(colored, COL)}${desc}`;
-    };
-    const envRow = (name, desc) => {
-        return `  ${padEndVisible(cyan(name), COL - 1)} ${desc}`;
-    };
+    // Pad first, colour after: `styleText` honours NO_COLOR, and padding the
+    // plain text keeps the columns aligned whether or not colour is on.
+    const row = (color, name, desc) => `  ${styleText(color, name.padEnd(COL))}${desc}`;
+    const dim = (t) => styleText('dim', t);
+    const section = (t) => styleText(['cyan', 'bold'], t);
     const lines = [
         '',
-        `${bold('Filesystem MCP')} ${dim(`v${SERVER_VERSION}`)}`,
+        `${styleText('bold', 'Filesystem MCP')} ${dim(`v${SERVER_VERSION}`)}`,
         '',
         dim('Pass one or more directories to set the allowed access roots.'),
         '',
         section('Options:'),
-        ...OPTIONS_HELP.map(({ flags, desc }) => optRow(flags, desc)),
+        ...OPTIONS_HELP.map(({ flags, desc }) => row('green', flags, desc)),
         '',
         `${section('Environment variables:')} ${dim('(flags take precedence when both are set)')}`,
-        ...ENV_HELP.map(({ flags, desc }) => envRow(flags, desc)),
+        ...ENV_HELP.map(({ flags, desc }) => row('cyan', flags, desc)),
         '',
         section('Examples:'),
         ...EXAMPLES_HELP.map((ex) => `  ${dim(ex)}`),
@@ -163,7 +144,7 @@ export function printHelpAndExit() {
     process.exit(0);
 }
 export function printVersionAndExit() {
-    process.stdout.write(`${cliFmt.cyan(SERVER_VERSION)}\n`);
+    process.stdout.write(`${styleText('cyan', SERVER_VERSION)}\n`);
     process.exit(0);
 }
 //# sourceMappingURL=cli-help.js.map

package/dist/cli-help.js.map

@@ -1 +1 @@
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Split out of cli.ts so that module holds only\n// argument parsing and directory validation: this file is static copy plus a\n// formatter, and shares no state with the parser.\n\nconst { version: SERVER_VERSION } = packageJson;\n\ninterface HelpRow {\n  flags: string;\n  desc: string;\n}\n\nconst OPTIONS_HELP: HelpRow[] = [\n  { flags: '-h, --help', desc: 'Show this help message' },\n  { flags: '-v, --version', desc: 'Show the server version' },\n  { flags: '--allow-cwd', desc: 'Add the current working directory as an allowed root' },\n  {\n    flags: '--port <number>',\n    desc: 'Start HTTP transport on this port (env: FS_PORT)',\n  },\n  {\n    flags: '--read-only',\n    desc: `Disable write tools: ${[...MUTATING_TOOL_NAMES].sort().join(', ')}`,\n  },\n  { flags: '--safe', desc: 'Alias for --read-only' },\n  {\n    flags: '--print-config',\n    desc: 'Print the active configuration and exit (use with --json for machine output)',\n  },\n  { flags: '--json', desc: 'Output --print-config as JSON' },\n  {\n    flags: '--log-level <level>',\n    desc: 'Log level, RFC 5424: debug|info|notice|warn|error|critical|alert|emergency (env: FS_LOG_LEVEL)',\n  },\n  { flags: '--http-host <host>', desc: 'HTTP server bind address (env: FS_HTTP_HOST)' },\n  {\n    flags: '--api-key <key>',\n    desc: 'Require this API key on HTTP requests; prefer FS_API_KEY (argv is world-readable)',\n  },\n  {\n    flags: '--allow-sensitive',\n    desc: 'Allow access to sensitive system paths (env: FS_ALLOW_SENSITIVE)',\n  },\n  {\n    flags: '--root-boundary <path>',\n    desc: 'Require all allowed roots to fall under this path (env: FS_ROOT_BOUNDARY)',\n  },\n  {\n    flags: '--max-file-size <bytes>',\n    desc: 'Maximum file size for reads in bytes (env: FS_MAX_FILE_SIZE)',\n  },\n  { flags: '--walk-cwd', desc: 'Walk up from CWD to find a project root; implies --allow-cwd' },\n  { flags: '--deny <pattern>', desc: 'Block paths matching this pattern; repeatable' },\n  {\n    flags: '--allow-missing-roots',\n    desc: 'Start even if configured allowed directories do not exist',\n  },\n];\n\nconst ENV_HELP: HelpRow[] = [\n  {\n    flags: 'FS_LOG_LEVEL',\n    desc: 'Log level, RFC 5424: debug|info|notice|warn|error|critical|alert|emergency',\n  },\n  { flags: 'FS_PORT', desc: 'Start HTTP transport on this port (unset = stdio)' },\n  { flags: 'FS_HTTP_HOST', desc: 'HTTP bind address' },\n  { flags: 'FS_API_KEY', desc: 'HTTP API key' },\n  {\n    flags: 'FS_TRUST_PROXY',\n    desc: 'Express trust-proxy setting: hop count or expression (unset = do not trust X-Forwarded-*)',\n  },\n  {\n    flags: 'FS_ALLOW_SENSITIVE',\n    desc: 'Allow sensitive system paths (\"true\" or \"1\" enables this)',\n  },\n  { flags: 'FS_ROOT_BOUNDARY', desc: 'Path prefix all allowed roots must fall under' },\n  { flags: 'FS_MAX_FILE_SIZE', desc: 'Maximum file size for reads in bytes' },\n  {\n    flags: 'FS_ALLOWED_DIRS',\n    desc: 'Allowed dirs: colon-separated (Unix), semicolon-separated (Windows)',\n  },\n  {\n    flags: 'FS_ALLOW_CWD_WALK',\n    desc: 'Walk up from CWD to find a project root (\"true\" or \"1\" enables this)',\n  },\n  { flags: 'FS_DENYLIST', desc: 'Paths/patterns to block, comma-separated' },\n  {\n    flags: 'FS_ALLOW_MISSING_ROOTS',\n    desc: 'Start even if configured allowed directories do not exist (\"true\" or \"1\" enables this)',\n  },\n  {\n    flags: 'FS_ALLOWED_HOSTS',\n    desc: 'Comma-separated Host header values to accept (HTTP transport)',\n  },\n  { flags: 'FS_ALLOWED_ORIGINS', desc: 'Comma-separated origin hostnames for CORS' },\n  {\n    flags: 'FS_ALLOW_UNRESTRICTED_HOSTS',\n    desc: 'Bind a wildcard host with no Host validation, accepts the risk (\"true\" or \"1\" enables this)',\n  },\n  { flags: 'FS_PUBLIC_URL', desc: 'Resource identifier URL for RFC 9728 discovery' },\n  {\n    flags: 'FS_RATE_LIMIT_RPM',\n    desc: 'Per-client-IP requests/min (default 120 authenticated, 6000 keyless loopback; 1–100000)',\n  },\n  {\n    flags: 'FS_MAX_REQUEST_BYTES',\n    desc: 'Max HTTP request body bytes (default 4194304, 1024–268435456)',\n  },\n  {\n    flags: 'FS_KEEPALIVE_TIMEOUT_MS',\n    desc: 'HTTP keep-alive timeout; set above any fronting proxy idle timeout (default 5000, 1000–600000)',\n  },\n  {\n    flags: 'FS_MAX_WATCHERS',\n    desc: 'Max concurrent file watchers (default 256, 1–4096)',\n  },\n  {\n    flags: 'FS_MAX_INLINE_MATCHES',\n    desc: 'Deprecated and ignored; maxResults sets the search_text page size. Removed in the next major',\n  },\n  {\n    flags: 'FS_MAX_READ_MANY_BYTES',\n    desc: 'Max total bytes across one batch read (default 524288, 10240–104857600)',\n  },\n  { flags: 'FS_SEARCH_TIMEOUT_MS', desc: 'Search timeout in ms (default 5000, 100–60000)' },\n  { flags: 'NO_COLOR', desc: 'Any value disables ANSI color output' },\n  {\n    flags: 'FS_REQUEST_STATE_KEY',\n    desc: 'HMAC key for input_required state; optional outside fleet mode, shared and >=32 bytes in fleet mode',\n  },\n];\n\nconst EXAMPLES_HELP = [\n  '$ filesystem-mcp /path/to/allowed/dir',\n  '$ filesystem-mcp --allow-cwd',\n  '$ filesystem-mcp /project/src /project/tests --allow-cwd',\n  '$ filesystem-mcp --port 3000 /path/to/allowed/dir',\n  '$ filesystem-mcp --read-only /data/readonly',\n  '$ filesystem-mcp --print-config --json /project',\n];\n\nexport function printHelpAndExit(): never {\n  const { bold, dim, section, flag, placeholder, cyan } = cliFmt;\n  const COL = 27;\n\n  const optRow = (flags: string, desc: string): string => {\n    const colored = flags\n      .replace(/<[^>]+>/g, (m) => placeholder(m))\n      .replace(/-{1,2}[\\w-]+/g, (m) => flag(m));\n    return `  ${padEndVisible(colored, COL)}${desc}`;\n  };\n\n  const envRow = (name: string, desc: string): string => {\n    return `  ${padEndVisible(cyan(name), COL - 1)} ${desc}`;\n  };\n\n  const lines = [\n    '',\n    `${bold('Filesystem MCP')} ${dim(`v${SERVER_VERSION}`)}`,\n    '',\n    dim('Pass one or more directories to set the allowed access roots.'),\n    '',\n    section('Options:'),\n    ...OPTIONS_HELP.map(({ flags, desc }) => optRow(flags, desc)),\n    '',\n    `${section('Environment variables:')} ${dim('(flags take precedence when both are set)')}`,\n    ...ENV_HELP.map(({ flags, desc }) => envRow(flags, desc)),\n    '',\n    section('Examples:'),\n    ...EXAMPLES_HELP.map((ex) => `  ${dim(ex)}`),\n    '',\n  ];\n\n  process.stdout.write(lines.join('\\n'));\n  process.exit(0);\n}\n\nexport function printVersionAndExit(): never {\n  process.stdout.write(`${cliFmt.cyan(SERVER_VERSION)}\\n`);\n  process.exit(0);\n}\n"]}
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Split out of cli.ts so that module holds only\n// argument parsing and directory validation: this file is static copy plus a\n// formatter, and shares no state with the parser.\n\nconst { version: SERVER_VERSION } = packageJson;\n\ninterface HelpRow {\n  flags: string;\n  desc: string;\n}\n\nconst OPTIONS_HELP: HelpRow[] = [\n  { flags: '-h, --help', desc: 'Show this help message' },\n  { flags: '-v, --version', desc: 'Show the server version' },\n  { flags: '--allow-cwd', desc: 'Add the current working directory as an allowed root' },\n  {\n    flags: '--port <number>',\n    desc: 'Start HTTP transport on this port (env: FS_PORT)',\n  },\n  {\n    flags: '--read-only',\n    desc: `Disable write tools: ${[...MUTATING_TOOL_NAMES].sort().join(', ')}`,\n  },\n  { flags: '--print-config', desc: 'Print the active configuration as JSON and exit' },\n  {\n    flags: '--log-level <level>',\n    desc: 'Log level, RFC 5424: debug|info|notice|warn|error|critical|alert|emergency (env: FS_LOG_LEVEL)',\n  },\n  { flags: '--http-host <host>', desc: 'HTTP server bind address (env: FS_HTTP_HOST)' },\n  {\n    flags: '--api-key <key>',\n    desc: 'Require this API key on HTTP requests; prefer FS_API_KEY (argv is world-readable)',\n  },\n  {\n    flags: '--allow-sensitive',\n    desc: 'Allow access to sensitive system paths (env: FS_ALLOW_SENSITIVE)',\n  },\n  {\n    flags: '--root-boundary <path>',\n    desc: 'Require all allowed roots to fall under this path (env: FS_ROOT_BOUNDARY)',\n  },\n  {\n    flags: '--max-file-size <bytes>',\n    desc: 'Maximum file size for reads in bytes (env: FS_MAX_FILE_SIZE)',\n  },\n  { flags: '--walk-cwd', desc: 'Walk up from CWD to find a project root; implies --allow-cwd' },\n  { flags: '--deny <pattern>', desc: 'Block paths matching this pattern; repeatable' },\n  {\n    flags: '--allow <pattern>',\n    desc: 'Exempt a pattern from the built-in sensitive denylist; repeatable (env: FS_ALLOWLIST)',\n  },\n  {\n    flags: '--allow-missing-roots',\n    desc: 'Start even if configured allowed directories do not exist',\n  },\n];\n\nconst ENV_HELP: HelpRow[] = [\n  {\n    flags: 'FS_LOG_LEVEL',\n    desc: 'Log level, RFC 5424: debug|info|notice|warn|error|critical|alert|emergency',\n  },\n  { flags: 'FS_PORT', desc: 'Start HTTP transport on this port (unset = stdio)' },\n  { flags: 'FS_HTTP_HOST', desc: 'HTTP bind address' },\n  { flags: 'FS_API_KEY', desc: 'HTTP API key' },\n  {\n    flags: 'FS_TRUST_PROXY',\n    desc: 'Express trust-proxy setting: hop count or expression (unset = do not trust X-Forwarded-*)',\n  },\n  {\n    flags: 'FS_ALLOW_SENSITIVE',\n    desc: 'Allow sensitive system paths (\"true\" or \"1\" enables this)',\n  },\n  { flags: 'FS_ROOT_BOUNDARY', desc: 'Path prefix all allowed roots must fall under' },\n  { flags: 'FS_MAX_FILE_SIZE', desc: 'Maximum file size for reads in bytes' },\n  {\n    flags: 'FS_ALLOWED_DIRS',\n    desc: 'Allowed dirs: colon-separated (Unix), semicolon-separated (Windows)',\n  },\n  {\n    flags: 'FS_ALLOW_CWD_WALK',\n    desc: 'Walk up from CWD to find a project root (\"true\" or \"1\" enables this)',\n  },\n  { flags: 'FS_DENYLIST', desc: 'Paths/patterns to block, comma-separated' },\n  {\n    flags: 'FS_ALLOWLIST',\n    desc: 'Patterns exempted from the built-in sensitive denylist, comma-separated; --deny/FS_DENYLIST still win',\n  },\n  {\n    flags: 'FS_ALLOW_MISSING_ROOTS',\n    desc: 'Start even if configured allowed directories do not exist (\"true\" or \"1\" enables this)',\n  },\n  {\n    flags: 'FS_ALLOWED_HOSTS',\n    desc: 'Comma-separated Host header values to accept (HTTP transport)',\n  },\n  { flags: 'FS_ALLOWED_ORIGINS', desc: 'Comma-separated origin hostnames for CORS' },\n  {\n    flags: 'FS_ALLOW_UNRESTRICTED_HOSTS',\n    desc: 'Bind a wildcard host with no Host validation, accepts the risk (\"true\" or \"1\" enables this)',\n  },\n  { flags: 'FS_PUBLIC_URL', desc: 'Resource identifier URL for RFC 9728 discovery' },\n  {\n    flags: 'FS_RATE_LIMIT_RPM',\n    desc: 'Per-client-IP requests/min (default 120 authenticated, 6000 keyless loopback; 1–100000)',\n  },\n  {\n    flags: 'FS_MAX_WATCHERS',\n    desc: 'Max concurrent file watchers (default 256, 1–4096)',\n  },\n  { flags: 'NO_COLOR', desc: 'Any value disables ANSI color output' },\n  {\n    flags: 'FS_REQUEST_STATE_KEY',\n    desc: 'HMAC key for input_required state; optional outside fleet mode, shared and >=32 bytes in fleet mode',\n  },\n];\n\nconst EXAMPLES_HELP = [\n  '$ filesystem-mcp /path/to/allowed/dir',\n  '$ filesystem-mcp --allow-cwd',\n  '$ filesystem-mcp /project/src /project/tests --allow-cwd',\n  '$ filesystem-mcp --port 3000 /path/to/allowed/dir',\n  '$ filesystem-mcp --read-only /data/readonly',\n  '$ filesystem-mcp --print-config /project',\n];\n\nexport function printHelpAndExit(): never {\n  const COL = 27;\n  // Pad first, colour after: `styleText` honours NO_COLOR, and padding the\n  // plain text keeps the columns aligned whether or not colour is on.\n  const row = (color: 'green' | 'cyan', name: string, desc: string): string =>\n    `  ${styleText(color, name.padEnd(COL))}${desc}`;\n  const dim = (t: string): string => styleText('dim', t);\n  const section = (t: string): string => styleText(['cyan', 'bold'], t);\n\n  const lines = [\n    '',\n    `${styleText('bold', 'Filesystem MCP')} ${dim(`v${SERVER_VERSION}`)}`,\n    '',\n    dim('Pass one or more directories to set the allowed access roots.'),\n    '',\n    section('Options:'),\n    ...OPTIONS_HELP.map(({ flags, desc }) => row('green', flags, desc)),\n    '',\n    `${section('Environment variables:')} ${dim('(flags take precedence when both are set)')}`,\n    ...ENV_HELP.map(({ flags, desc }) => row('cyan', flags, desc)),\n    '',\n    section('Examples:'),\n    ...EXAMPLES_HELP.map((ex) => `  ${dim(ex)}`),\n    '',\n  ];\n\n  process.stdout.write(lines.join('\\n'));\n  process.exit(0);\n}\n\nexport function printVersionAndExit(): never {\n  process.stdout.write(`${styleText('cyan', SERVER_VERSION)}\\n`);\n  process.exit(0);\n}\n"]}

package/dist/cli.d.ts

@@ -7,7 +7,6 @@ export declare function parseArgs(): Promise<{
     port: number | undefined;
     readOnly: boolean;
     printConfig: boolean;
-    json: boolean;
     httpHost: string | undefined;
     apiKey: string | undefined;
 }>;
@@ -15,7 +14,6 @@ export declare function runPrintConfig(options: {
     allowedDirs: string[];
     allowCwd: boolean;
     readOnly: boolean;
-    json: boolean;
     /** Resolved `--port`. Present means the launch this reports on is an HTTP bind. */
     port?: number;
     httpHost?: string;

package/dist/cli.d.ts.map

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+{"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":"AAqBA,qBAAa,YAAa,SAAQ,KAAK;gBACzB,OAAO,EAAE,MAAM;CAI5B;AAyFD,wBAAsB,SAAS,IAAI,OAAO,CAAC;IACzC,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,QAAQ,EAAE,OAAO,CAAC;IAClB,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;IACzB,QAAQ,EAAE,OAAO,CAAC;IAClB,WAAW,EAAE,OAAO,CAAC;IACrB,QAAQ,EAAE,MAAM,GAAG,SAAS,CAAC;IAC7B,MAAM,EAAE,MAAM,GAAG,SAAS,CAAC;CAC5B,CAAC,CA2ED;AAMD,wBAAsB,cAAc,CAAC,OAAO,EAAE;IAC5C,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,QAAQ,EAAE,OAAO,CAAC;IAClB,QAAQ,EAAE,OAAO,CAAC;IAClB,mFAAmF;IACnF,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB,GAAG,OAAO,CAAC,IAAI,CAAC,CAyBhB"}

package/dist/cli.js

@@ -1,14 +1,12 @@
 import { stat } from 'node:fs/promises';
 import { parseArgs as utilParseArgs } from 'node:util';
-import { printHelpAndExit, printVersionAndExit } from './cli-help.js';
-import { cli } from './core/config.js';
-import { formatUnknownErrorMessage } from './core/errors.js';
-import { cliFmt, padEndVisible } from './core/fmt.js';
-import { getReservedDeviceNameForPath, isWindowsDriveRelativePath, normalizePath, } from './core/path-utils.js';
-import { PathGuard } from './core/path.js';
-import { IS_WINDOWS, parseTrueEnvFlag } from './core/primitives.js';
-import { getMaxTextFileSize } from './core/util.js';
-import { registeredTools } from './tools/index.js';
+import { printHelpAndExit, printVersionAndExit } from "./cli-help.js";
+import { cli } from "./core/config.js";
+import { formatUnknownErrorMessage } from "./core/errors.js";
+import { getReservedDeviceNameForPath, isWindowsDriveRelativePath, normalizePath, parseTrueEnvFlag, } from "./core/path-utils.js";
+import { PathGuard } from "./core/path.js";
+import { getMaxTextFileSize } from "./core/util.js";
+import { registeredTools } from "./tools/index.js";
 // ════════════════════════════════════════════════════════════
 // Path & Config Utilities — pure functions and error types
 // ════════════════════════════════════════════════════════════
@@ -48,29 +46,20 @@ async function validateDirectoryPath(inputPath, allowMissing = false) {
         throw new Error(`${inputPath} is not a directory`);
     return normalized;
 }
+// No dedupe here: PathGuard's `normalizeAllowedDirectories` already Set-dedupes
+// the normalized set, and containment checks are case-insensitive where the
+// filesystem is.
 async function normalizeAndValidateDirs(paths, allowMissing = false) {
     const normalized = [];
     for (const p of paths) {
         normalized.push(await validateDirectoryPath(p, allowMissing));
     }
-    return deduplicateAllowedDirectories(normalized);
+    return normalized;
 }
 function normalizeCliExitMessage(error) {
     const rawMessage = formatUnknownErrorMessage(error);
     return rawMessage.startsWith('Error:') ? rawMessage : `Error: ${rawMessage}`;
 }
-function deduplicateAllowedDirectories(dirs) {
-    const seen = new Set();
-    const deduplicated = [];
-    for (const dir of dirs) {
-        const key = IS_WINDOWS ? dir.toLowerCase() : dir;
-        if (seen.has(key))
-            continue;
-        seen.add(key);
-        deduplicated.push(dir);
-    }
-    return deduplicated;
-}
 function parsePortOption(raw) {
     // '' reads as unset: FS_PORT set-but-empty (compose templating) means stdio.
     if (raw === undefined || raw === '')
@@ -85,9 +74,7 @@ const CLI_PARSER_CONFIG = {
     options: {
         'allow-cwd': { type: 'boolean', default: false },
         'read-only': { type: 'boolean', default: false },
-        safe: { type: 'boolean', default: false },
         'print-config': { type: 'boolean', default: false },
-        json: { type: 'boolean', default: false },
         port: { type: 'string' },
         help: { type: 'boolean', short: 'h' },
         version: { type: 'boolean', short: 'v' },
@@ -99,6 +86,7 @@ const CLI_PARSER_CONFIG = {
         'max-file-size': { type: 'string' },
         'walk-cwd': { type: 'boolean', default: false },
         deny: { type: 'string', multiple: true },
+        allow: { type: 'string', multiple: true },
         'allow-missing-roots': { type: 'boolean', default: false },
     },
     strict: true,
@@ -136,17 +124,20 @@ export async function parseArgs() {
             cli.allowCwdWalk = true;
         if (v['allow-missing-roots'])
             cli.allowMissingRoots = true;
-        if (v.deny !== undefined) {
-            const denyPatterns = [...new Set(v.deny.map((entry) => entry.trim()).filter(Boolean))];
-            if (denyPatterns.length > 0)
-                cli.denyPatterns = denyPatterns;
-        }
+        const patternList = (entries) => [
+            ...new Set((entries ?? []).map((entry) => entry.trim()).filter(Boolean)),
+        ];
+        const denyPatterns = patternList(v.deny);
+        if (denyPatterns.length > 0)
+            cli.denyPatterns = denyPatterns;
+        const allowPatterns = patternList(v.allow);
+        if (allowPatterns.length > 0)
+            cli.allowPatterns = allowPatterns;
         const allowCwd = v['allow-cwd'] ||
             v['walk-cwd'] ||
             parseTrueEnvFlag(process.env['FS_ALLOW_CWD_WALK'], 'FS_ALLOW_CWD_WALK');
-        const readOnly = v['read-only'] || v.safe;
+        const readOnly = v['read-only'];
         const printConfig = v['print-config'];
-        const json = v.json;
         const port = parsePortOption(v.port ?? process.env['FS_PORT']);
         const allowMissingRoots = v['allow-missing-roots'] ||
             parseTrueEnvFlag(process.env['FS_ALLOW_MISSING_ROOTS'], 'FS_ALLOW_MISSING_ROOTS');
@@ -166,7 +157,6 @@ export async function parseArgs() {
             port,
             readOnly,
             printConfig,
-            json,
             httpHost,
             apiKey,
         };
@@ -179,10 +169,9 @@ export async function parseArgs() {
     }
 }
 // ════════════════════════════════════════════════════════════
-// Effective config reporting — prints the resolved server config
+// Effective config reporting — prints the resolved server config as JSON
 // ════════════════════════════════════════════════════════════
 export async function runPrintConfig(options) {
-    const write = (s) => process.stdout.write(s);
     const pathGuard = new PathGuard({
         allowCwd: options.allowCwd,
         cliAllowedDirs: options.allowedDirs,
@@ -202,17 +191,6 @@ export async function runPrintConfig(options) {
         apiKey: options.apiKey ? '***' : null,
         limits: { maxFileSizeBytes: getMaxTextFileSize() },
     };
-    if (options.json) {
-        write(JSON.stringify(config, null, 2));
-    }
-    else {
-        const key = (k) => padEndVisible(cliFmt.cyan(k), 14);
-        write(`${key('transport:')}${config.transport}\n`);
-        write(`${key('readOnly:')}${cliFmt.bool(config.readOnly)}\n`);
-        write(`${key('apiKey:')}${cliFmt.dim(config.apiKey ?? 'none')}\n`);
-        write(`${key('allowedRoots:')}${config.allowedRoots.join(', ') || cliFmt.dim('(none)')}\n`);
-        write(`${key('tools:')}${cliFmt.dim(config.tools.join(', '))}\n`);
-        write(`${key('maxFileSize:')}${cliFmt.yellow(String(config.limits.maxFileSizeBytes))}\n`);
-    }
+    process.stdout.write(`${JSON.stringify(config, null, 2)}\n`);
 }
 //# sourceMappingURL=cli.js.map

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super(message);\n    this.name = 'CliExitError';\n  }\n}\n\nfunction validateCliPath(inputPath: string): void {\n  if (inputPath.includes('\\0')) {\n    throw new CliExitError('Path contains null bytes.');\n  }\n\n  if (isWindowsDriveRelativePath(inputPath)) {\n    throw new CliExitError(\n      'Windows drive-relative paths are not allowed. Use C:\\\\path or C:/path instead of C:path.',\n    );\n  }\n\n  const reserved = getReservedDeviceNameForPath(inputPath);\n  if (reserved) {\n    throw new CliExitError(`Windows reserved device name not allowed: ${reserved}.`);\n  }\n}\n\nasync function validateDirectoryPath(inputPath: string, allowMissing = false): Promise<string> {\n  const normalized = normalizePath(inputPath);\n\n  let stats: Stats;\n  try {\n    stats = await stat(normalized);\n  } catch (error) {\n    if (allowMissing) return normalized;\n    // Node's own message already names the syscall and the errno.\n    throw new Error(`Cannot access directory ${inputPath}: ${formatUnknownErrorMessage(error)}`, {\n      cause: error,\n    });\n  }\n\n  if (!stats.isDirectory()) throw new Error(`${inputPath} is not a directory`);\n  return normalized;\n}\n\nasync function normalizeAndValidateDirs(\n  paths: readonly string[],\n  allowMissing = false,\n): Promise<string[]> {\n  const normalized: string[] = [];\n  for (const p of paths) {\n    normalized.push(await validateDirectoryPath(p, allowMissing));\n  }\n  return deduplicateAllowedDirectories(normalized);\n}\n\nfunction normalizeCliExitMessage(error: unknown): string {\n  const rawMessage = formatUnknownErrorMessage(error);\n  return rawMessage.startsWith('Error:') ? rawMessage : `Error: ${rawMessage}`;\n}\n\nfunction deduplicateAllowedDirectories(dirs: readonly string[]): string[] {\n  const seen = new Set<string>();\n  const deduplicated: string[] = [];\n\n  for (const dir of dirs) {\n    const key = IS_WINDOWS ? dir.toLowerCase() : dir;\n    if (seen.has(key)) continue;\n    seen.add(key);\n    deduplicated.push(dir);\n  }\n\n  return deduplicated;\n}\n\nfunction parsePortOption(raw: unknown): number | undefined {\n  // '' reads as unset: FS_PORT set-but-empty (compose templating) means stdio.\n  if (raw === undefined || raw === '') return undefined;\n  const n = Number(raw);\n  if (!Number.isInteger(n) || n < 1 || n > 65535) {\n    throw new CliExitError(`Error: --port / FS_PORT must be an integer between 1 and 65535`);\n  }\n  return n;\n}\n\nconst CLI_PARSER_CONFIG = {\n  options: {\n    'allow-cwd': { type: 'boolean', default: false },\n    'read-only': { type: 'boolean', default: false },\n    safe: { type: 'boolean', default: false },\n    'print-config': { type: 'boolean', default: false },\n    json: { type: 'boolean', default: false },\n    port: { type: 'string' },\n    help: { type: 'boolean', short: 'h' },\n    version: { type: 'boolean', short: 'v' },\n    'log-level': { type: 'string' },\n    'http-host': { type: 'string' },\n    'api-key': { type: 'string' },\n    'allow-sensitive': { type: 'boolean', default: false },\n    'root-boundary': { type: 'string' },\n    'max-file-size': { type: 'string' },\n    'walk-cwd': { type: 'boolean', default: false },\n    deny: { type: 'string', multiple: true },\n    'allow-missing-roots': { type: 'boolean', default: false },\n  },\n  strict: true,\n  allowPositionals: true,\n} as const;\n\nexport async function parseArgs(): Promise<{\n  allowedDirs: string[];\n  allowCwd: boolean;\n  port: number | undefined;\n  readOnly: boolean;\n  printConfig: boolean;\n  json: boolean;\n  httpHost: string | undefined;\n  apiKey: string | undefined;\n}> {\n  try {\n    const parsed = utilParseArgs(CLI_PARSER_CONFIG);\n\n    if (parsed.values.help) {\n      printHelpAndExit();\n    }\n\n    if (parsed.values.version) {\n      printVersionAndExit();\n    }\n\n    for (const positional of parsed.positionals) {\n      validateCliPath(positional);\n    }\n\n    const v = parsed.values;\n    // `--http-host` and `--api-key` are returned to the caller and handed to\n    // the server as config. Every other flag lands in the CLI-override store\n    // (core/config.ts) — the one owner of the flag-beats-env rule — which deep\n    // core readers (path, sensitive, observability, util) consult before\n    // falling back to the operator's environment. 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Use C:\\\\path or C:/path instead of C:path.',\n    );\n  }\n\n  const reserved = getReservedDeviceNameForPath(inputPath);\n  if (reserved) {\n    throw new CliExitError(`Windows reserved device name not allowed: ${reserved}.`);\n  }\n}\n\nasync function validateDirectoryPath(inputPath: string, allowMissing = false): Promise<string> {\n  const normalized = normalizePath(inputPath);\n\n  let stats: Stats;\n  try {\n    stats = await stat(normalized);\n  } catch (error) {\n    if (allowMissing) return normalized;\n    // Node's own message already names the syscall and the errno.\n    throw new Error(`Cannot access directory ${inputPath}: ${formatUnknownErrorMessage(error)}`, {\n      cause: error,\n    });\n  }\n\n  if (!stats.isDirectory()) throw new Error(`${inputPath} is not a directory`);\n  return normalized;\n}\n\n// No dedupe here: PathGuard's `normalizeAllowedDirectories` already Set-dedupes\n// the normalized set, and containment checks are case-insensitive where the\n// filesystem is.\nasync function normalizeAndValidateDirs(\n  paths: readonly string[],\n  allowMissing = false,\n): Promise<string[]> {\n  const normalized: string[] = [];\n  for (const p of paths) {\n    normalized.push(await validateDirectoryPath(p, allowMissing));\n  }\n  return normalized;\n}\n\nfunction normalizeCliExitMessage(error: unknown): string {\n  const rawMessage = formatUnknownErrorMessage(error);\n  return rawMessage.startsWith('Error:') ? rawMessage : `Error: ${rawMessage}`;\n}\n\nfunction parsePortOption(raw: unknown): number | undefined {\n  // '' reads as unset: FS_PORT set-but-empty (compose templating) means stdio.\n  if (raw === undefined || raw === '') return undefined;\n  const n = Number(raw);\n  if (!Number.isInteger(n) || n < 1 || n > 65535) {\n    throw new CliExitError(`Error: --port / FS_PORT must be an integer between 1 and 65535`);\n  }\n  return n;\n}\n\nconst CLI_PARSER_CONFIG = {\n  options: {\n    'allow-cwd': { type: 'boolean', default: false },\n    'read-only': { type: 'boolean', default: false },\n    'print-config': { type: 'boolean', default: false },\n    port: { type: 'string' },\n    help: { type: 'boolean', short: 'h' },\n    version: { type: 'boolean', short: 'v' },\n    'log-level': { type: 'string' },\n    'http-host': { type: 'string' },\n    'api-key': { type: 'string' },\n    'allow-sensitive': { type: 'boolean', default: false },\n    'root-boundary': { type: 'string' },\n    'max-file-size': { type: 'string' },\n    'walk-cwd': { type: 'boolean', default: false },\n    deny: { type: 'string', multiple: true },\n    allow: { type: 'string', multiple: true },\n    'allow-missing-roots': { type: 'boolean', default: false },\n  },\n  strict: true,\n  allowPositionals: true,\n} as const;\n\nexport async function parseArgs(): Promise<{\n  allowedDirs: string[];\n  allowCwd: boolean;\n  port: number | undefined;\n  readOnly: boolean;\n  printConfig: boolean;\n  httpHost: string | undefined;\n  apiKey: string | undefined;\n}> {\n  try {\n    const parsed = utilParseArgs(CLI_PARSER_CONFIG);\n\n    if (parsed.values.help) {\n      printHelpAndExit();\n    }\n\n    if (parsed.values.version) {\n      printVersionAndExit();\n    }\n\n    for (const positional of parsed.positionals) {\n      validateCliPath(positional);\n    }\n\n    const v = parsed.values;\n    // `--http-host` and `--api-key` are returned to the caller and handed to\n    // the server as config. Every other flag lands in the CLI-override store\n    // (core/config.ts) — the one owner of the flag-beats-env rule — which deep\n    // core readers (path, sensitive, observability, util) consult before\n    // falling back to the operator's environment. Nothing writes process.env.\n    const httpHost = v['http-host'] ?? process.env['FS_HTTP_HOST'];\n    const apiKey = v['api-key'] ?? process.env['FS_API_KEY'];\n    if (v['log-level'] !== undefined) cli.logLevel = v['log-level'];\n    if (v['max-file-size'] !== undefined) cli.maxFileSize = v['max-file-size'];\n    if (v['root-boundary'] !== undefined) cli.rootBoundary = v['root-boundary'];\n    if (v['allow-sensitive']) cli.allowSensitive = true;\n    if (v['walk-cwd']) cli.allowCwdWalk = true;\n    if (v['allow-missing-roots']) cli.allowMissingRoots = true;\n    const patternList = (entries: readonly string[] | undefined): readonly string[] => [\n      ...new Set((entries ?? []).map((entry) => entry.trim()).filter(Boolean)),\n    ];\n    const denyPatterns = patternList(v.deny);\n    if (denyPatterns.length > 0) cli.denyPatterns = denyPatterns;\n    const allowPatterns = patternList(v.allow);\n    if (allowPatterns.length > 0) cli.allowPatterns = allowPatterns;\n\n    const allowCwd =\n      v['allow-cwd'] ||\n      v['walk-cwd'] ||\n      parseTrueEnvFlag(process.env['FS_ALLOW_CWD_WALK'], 'FS_ALLOW_CWD_WALK');\n    const readOnly = v['read-only'];\n    const printConfig = v['print-config'];\n    const port = parsePortOption(v.port ?? process.env['FS_PORT']);\n    const allowMissingRoots =\n      v['allow-missing-roots'] ||\n      parseTrueEnvFlag(process.env['FS_ALLOW_MISSING_ROOTS'], 'FS_ALLOW_MISSING_ROOTS');\n\n    let allowedDirs: string[] = [];\n    try {\n      allowedDirs =\n        parsed.positionals.length > 0\n          ? await normalizeAndValidateDirs(parsed.positionals, allowMissingRoots)\n          : [];\n    } catch (error: unknown) {\n      throw new CliExitError(normalizeCliExitMessage(error));\n    }\n\n    return {\n      allowedDirs,\n      allowCwd,\n      port,\n      readOnly,\n      printConfig,\n      httpHost,\n      apiKey,\n    };\n  } catch (error: unknown) {\n    if (error instanceof CliExitError) {\n      throw error;\n    }\n\n    throw new CliExitError(normalizeCliExitMessage(error));\n  }\n}\n\n// ════════════════════════════════════════════════════════════\n// Effective config reporting — prints the resolved server config as JSON\n// ════════════════════════════════════════════════════════════\n\nexport async function runPrintConfig(options: {\n  allowedDirs: string[];\n  allowCwd: boolean;\n  readOnly: boolean;\n  /** Resolved `--port`. Present means the launch this reports on is an HTTP bind. */\n  port?: number;\n  httpHost?: string;\n  apiKey?: string;\n}): Promise<void> {\n  const pathGuard = new PathGuard({\n    allowCwd: options.allowCwd,\n    cliAllowedDirs: options.allowedDirs,\n  });\n  await pathGuard.recomputeAllowedDirectories();\n  const allowedRoots = pathGuard.getAllowedDirectories();\n\n  const tools = registeredTools(options.readOnly).map((t) => t.name);\n\n  // Derived, never assumed: `--print-config --port 3000` reports the HTTP bind\n  // that `--port` would actually have started, not the stdio default.\n  const config = {\n    transport:\n      options.port !== undefined\n        ? `http://${options.httpHost ?? '127.0.0.1'}:${String(options.port)}`\n        : 'stdio',\n    readOnly: options.readOnly,\n    allowedRoots,\n    tools,\n    apiKey: options.apiKey ? '***' : null,\n    limits: { maxFileSizeBytes: getMaxTextFileSize() },\n  };\n\n  process.stdout.write(`${JSON.stringify(config, null, 2)}\\n`);\n}\n"]}

package/dist/core/concurrency.d.ts

@@ -2,8 +2,8 @@ import * as z from 'zod/v4';
 export type StoppedReason = 'maxResults' | 'maxFiles' | 'timeout';
 export declare const StoppedReasonSchema: z.ZodOptional<z.ZodEnum<{
     maxResults: "maxResults";
-    timeout: "timeout";
     maxFiles: "maxFiles";
+    timeout: "timeout";
 }>>;
 /**
  * The subset `search_text` and `find_files` can actually emit. Their scans call
@@ -15,19 +15,6 @@ export declare const SearchStoppedReasonSchema: z.ZodOptional<z.ZodEnum<{
     maxResults: "maxResults";
     timeout: "timeout";
 }>>;
-/**
- * Accumulates why an enumeration stopped early. maxResults wins over maxFiles
- * wins over timeout (the most specific cap is the definite cause even if the
- * abort also fired on the same iteration). Call `resolve()` once at the end.
- */
-export declare class StopReasonTracker {
-    #private;
-    hitMaxResults(): void;
-    hitMaxFiles(): void;
-    hitAbort(): void;
-    get truncated(): boolean;
-    resolve(): StoppedReason | undefined;
-}
 interface ParallelResult<R> {
     results: {
         index: number;
@@ -46,8 +33,9 @@ export declare function processInParallel<T, R>(items: readonly T[], processor:
  *
  * `maxEntries` caps how many entries are dispatched (maxFiles); `shouldStop`
  * lets the caller stop on its own accumulating result count (maxResults). Both
- * are checked before dispatch, so the returned tracker names exactly one
- * reason — the loop breaks on the first that fires.
+ * are checked before dispatch, so the returned reason is exactly one — the
+ * loop breaks on the first that fires. `undefined` means every entry was
+ * dispatched.
  */
 export declare function processEntriesConcurrently(entries: AsyncIterable<{
     path: string;
@@ -61,7 +49,7 @@ export declare function processEntriesConcurrently(entries: AsyncIterable<{
     onEntry: () => void;
     onError?: (entryPath: string, err: unknown) => void;
     runEntry: (entryPath: string) => Promise<void>;
-}): Promise<StopReasonTracker>;
+}): Promise<StoppedReason | undefined>;
 export declare function withAbort<T>(promise: Promise<T>, signal?: AbortSignal): Promise<T>;
 export {};
 //# sourceMappingURL=concurrency.d.ts.map

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