@isaacriehm/cairn-core 0.7.3 → 0.9.1

package/dist/init/topic-index/index.js

@@ -18,7 +18,8 @@ import { walkProseBlocks } from "./walk.js";
 const log = logger("init.topic-index");
 export async function buildTopicIndex(args) {
     const blocks = args.blocks ?? walkProseBlocks(args.repoRoot);
-    const judge = args.judge ?? makeHaikuJudge({ repoRoot: args.repoRoot });
+    const tally = { cached: 0, fresh: 0, errors: 0 };
+    const judge = args.judge ?? makeHaikuJudge({ repoRoot: args.repoRoot, tally });
     log.debug({ blockCount: blocks.length }, "phase-5b walk complete");
     const emitProgress = args.emitProgress !== false;
     const startedAt = Date.now();
@@ -66,6 +67,7 @@ export async function buildTopicIndex(args) {
             fileCandidatesMapPath: fileCandidatesMapAbs,
             fileCandidates,
             rejectedGcDropped,
+            tally,
         });
     }
     catch (err) {
@@ -100,12 +102,15 @@ function runRejectedGc(repoRoot, topicIndex) {
     return dropped;
 }
 function finishResult(args) {
-    const { result, blocks, topicIndexPath, anchorMapPath, fileCandidatesMapPath, fileCandidates, rejectedGcDropped, } = args;
+    const { result, blocks, topicIndexPath, anchorMapPath, fileCandidatesMapPath, fileCandidates, rejectedGcDropped, tally, } = args;
     log.info({
         blockCount: blocks.length,
         verbatim: result.verbatimCollisions,
         semantic: result.semanticCollisions,
         judgeCalls: result.judgeCalls,
+        judgeCached: tally.cached,
+        judgeFresh: tally.fresh,
+        judgeErrors: tally.errors,
         filesWithCandidates: Object.keys(fileCandidates).length,
         rejectedGcDropped: rejectedGcDropped.length,
     }, "phase-5b topic-index built");
@@ -117,6 +122,9 @@ function finishResult(args) {
         fileCandidatesMapPath,
         fileCandidates,
         rejectedGcDropped,
+        judgeCached: tally.cached,
+        judgeFresh: tally.fresh,
+        judgeErrors: tally.errors,
     };
 }
 export { walkProseBlocks } from "./walk.js";

package/dist/init/topic-index/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/init/topic-index/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,EAAE,MAAM,EAAE,MAAM,iBAAiB,CAAC;AACzC,OAAO,EACL,cAAc,EACd,gBAAgB,EAChB,cAAc,EACd,sBAAsB,EACtB,iBAAiB,EACjB,eAAe,GAChB,MAAM,yBAAyB,CAAC;AACjC,OAAO,EAAE,aAAa,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAC9D,OAAO,EAAE,cAAc,EAAmB,MAAM,YAAY,CAAC;AAC7D,OAAO,EAAE,aAAa,EAA8D,MAAM,cAAc,CAAC;AACzG,OAAO,EAAE,eAAe,EAAmB,MAAM,WAAW,CAAC;AAE7D,MAAM,GAAG,GAAG,MAAM,CAAC,kBAAkB,CAAC,CAAC;AA0CvC,MAAM,CAAC,KAAK,UAAU,eAAe,CACnC,IAAyB;IAEzB,MAAM,MAAM,GAAG,IAAI,CAAC,MAAM,IAAI,eAAe,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;IAC7D,MAAM,KAAK,GAAe,EAAE,MAAM,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC;IAC7D,MAAM,KAAK,GACT,IAAI,CAAC,KAAK,IAAI,cAAc,CAAC,EAAE,QAAQ,EAAE,IAAI,CAAC,QAAQ,EAAE,KAAK,EAAE,CAAC,CAAC;IAEnE,GAAG,CAAC,KAAK,CAAC,EAAE,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,EAAE,wBAAwB,CAAC,CAAC;IAEnE,MAAM,YAAY,GAAG,IAAI,CAAC,YAAY,KAAK,KAAK,CAAC;IACjD,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IAC7B,MAAM,UAAU,GAAG,YAAY;QAC7B,CAAC,CAAC,CAAC,IAAmB,EAAQ,EAAE;YAC5B,aAAa,CAAC,IAAI,CAAC,QAAQ,EAAE;gBAC3B,KAAK,EAAE,gBAAgB;gBACvB,KAAK,EAAE,IAAI,CAAC,UAAU;gBACtB,KAAK,EAAE,IAAI,CAAC,UAAU;gBACtB,SAAS;aACV,CAAC,CAAC;QACL,CAAC;QACH,CAAC,CAAC,SAAS,CAAC;IAEd,MAAM,WAAW,GAMb,EAAE,KAAK,EAAE,CAAC;IACd,IAAI,IAAI,CAAC,mBAAmB,KAAK,SAAS;QAAE,WAAW,CAAC,mBAAmB,GAAG,IAAI,CAAC,mBAAmB,CAAC;IACvG,IAAI,IAAI,CAAC,aAAa,KAAK,SAAS;QAAE,WAAW,CAAC,aAAa,GAAG,IAAI,CAAC,aAAa,CAAC;IACrF,IAAI,IAAI,CAAC,gBAAgB,KAAK,SAAS;QAAE,WAAW,CAAC,gBAAgB,GAAG,IAAI,CAAC,gBAAgB,CAAC;IAC9F,IAAI,UAAU,KAAK,SAAS;QAAE,WAAW,CAAC,UAAU,GAAG,UAAU,CAAC;IAClE,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,MAAM,aAAa,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;QACxD,MAAM,cAAc,GAAG,eAAe,CAAC,IAAI,CAAC,QAAQ,EAAE,MAAM,CAAC,UAAU,CAAC,CAAC;QACzE,MAAM,aAAa,GAAG,cAAc,CAAC,IAAI,CAAC,QAAQ,EAAE,MAAM,CAAC,SAAS,CAAC,CAAC;QACtE,qBAAqB;QACrB,mEAAmE;QACnE,mEAAmE;QACnE,sCAAsC;QACtC,kEAAkE;QAClE,iEAAiE;QACjE,+DAA+D;QAC/D,oDAAoD;QACpD,MAAM,oBAAoB,GAAG,sBAAsB,CAAC,IAAI,CAAC,QAAQ,EAAE,MAAM,CAAC,UAAU,CAAC,CAAC;QACtF,MAAM,cAAc,GAAG,sBAAsB,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;QACjE,MAAM,iBAAiB,GAAG,aAAa,CAAC,IAAI,CAAC,QAAQ,EAAE,MAAM,CAAC,UAAU,CAAC,CAAC;QAC1E,IAAI,YAAY;YAAE,aAAa,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;QAC/C,OAAO,YAAY,CAAC;YAClB,MAAM;YACN,MAAM;YACN,cAAc;YACd,aAAa;YACb,qBAAqB,EAAE,oBAAoB;YAC3C,cAAc;YACd,iBAAiB;YACjB,KAAK;SACN,CAAC,CAAC;IACL,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,IAAI,YAAY;YAAE,aAAa,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;QAC/C,MAAM,GAAG,CAAC;IACZ,CAAC;AACH,CAAC;AAED,SAAS,sBAAsB,CAC7B,UAAuC;IAEvC,MAAM,MAAM,GAA2B,EAAE,CAAC;IAC1C,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,MAAM,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,CAAC;QACrD,IAAI,KAAK,CAAC,MAAM,KAAK,SAAS;YAAE,SAAS;QACzC,MAAM,CAAC,KAAK,CAAC,UAAU,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC;IACjE,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,SAAS,aAAa,CACpB,QAAgB,EAChB,UAAuC;IAEvC,MAAM,QAAQ,GAAG,gBAAgB,CAAC,QAAQ,CAAC,CAAC;IAC5C,IAAI,QAAQ,CAAC,IAAI,KAAK,CAAC;QAAE,OAAO,EAAE,CAAC;IACnC,MAAM,SAAS,GAAG,IAAI,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC,CAAC;IAC1D,MAAM,OAAO,GAAG,cAAc,CAAC,QAAQ,EAAE,SAAS,CAAC,CAAC;IACpD,MAAM,OAAO,GAAa,EAAE,CAAC;IAC7B,KAAK,MAAM,IAAI,IAAI,QAAQ,CAAC,IAAI,EAAE,EAAE,CAAC;QACnC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC;YAAE,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IAC7C,CAAC;IACD,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,IAAI,OAAO,CAAC,IAAI,KAAK,QAAQ,CAAC,IAAI,EAAE,CAAC;QACzD,iBAAiB,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;IACvC,CAAC;IACD,OAAO,OAAO,CAAC;AACjB,CAAC;AAED,SAAS,YAAY,CAAC,IASrB;IACC,MAAM,EACJ,MAAM,EACN,MAAM,EACN,cAAc,EACd,aAAa,EACb,qBAAqB,EACrB,cAAc,EACd,iBAAiB,EACjB,KAAK,GACN,GAAG,IAAI,CAAC;IAET,GAAG,CAAC,IAAI,CACN;QACE,UAAU,EAAE,MAAM,CAAC,MAAM;QACzB,QAAQ,EAAE,MAAM,CAAC,kBAAkB;QACnC,QAAQ,EAAE,MAAM,CAAC,kBAAkB;QACnC,UAAU,EAAE,MAAM,CAAC,UAAU;QAC7B,WAAW,EAAE,KAAK,CAAC,MAAM;QACzB,UAAU,EAAE,KAAK,CAAC,KAAK;QACvB,WAAW,EAAE,KAAK,CAAC,MAAM;QACzB,mBAAmB,EAAE,MAAM,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC,MAAM;QACvD,iBAAiB,EAAE,iBAAiB,CAAC,MAAM;KAC5C,EACD,4BAA4B,CAC7B,CAAC;IAEF,OAAO;QACL,GAAG,MAAM;QACT,UAAU,EAAE,MAAM,CAAC,MAAM;QACzB,cAAc;QACd,aAAa;QACb,qBAAqB;QACrB,cAAc;QACd,iBAAiB;QACjB,WAAW,EAAE,KAAK,CAAC,MAAM;QACzB,UAAU,EAAE,KAAK,CAAC,KAAK;QACvB,WAAW,EAAE,KAAK,CAAC,MAAM;KAC1B,CAAC;AACJ,CAAC;AAED,OAAO,EAAE,eAAe,EAAE,MAAM,WAAW,CAAC;AAE5C,OAAO,EAAE,aAAa,EAAE,MAAM,cAAc,CAAC;AAE7C,OAAO,EAAE,cAAc,EAAE,MAAM,YAAY,CAAC"}

package/dist/init/topic-index/judge.d.ts

@@ -6,9 +6,24 @@
  * actually about the same decision/topic.
  */
 import type { SemanticJudge } from "./resolve.js";
+/**
+ * Per-build counters for the Haiku judge. The orchestrator
+ * (`buildTopicIndex`) constructs one and threads it through
+ * `makeHaikuJudge`; the judge increments per call so the phase
+ * output can split `judge_calls` into cached vs fresh vs errored.
+ * Smokes that pass a mock judge skip this surface entirely — the
+ * tally fields stay at 0, which is correct (no Haiku spend at all).
+ */
+export interface JudgeTally {
+    cached: number;
+    fresh: number;
+    errors: number;
+}
 export interface JudgeOptions {
     repoRoot?: string;
     offline?: boolean;
+    /** Optional counter object — when provided, every judge call updates one of cached / fresh / errors. */
+    tally?: JudgeTally;
 }
 /**
  * Return a semantic judge implementation that calls Haiku.

package/dist/init/topic-index/judge.js

@@ -22,7 +22,13 @@ const VERDICT_SCHEMA = {
     required: ["verdict"],
     additionalProperties: false,
 };
-const TIMEOUT_MS = 20_000;
+// 30s ceiling per judge call. Was 20s before — under sustained
+// network or Haiku-side latency the 20s ceiling was hitting the
+// timeout classification before the call had a chance to return,
+// which then either tripped the breaker or accumulated as
+// `unresolvedAmbiguous`. 30s is the longest a single judge call
+// should ever take in practice; anything longer is genuinely stuck.
+const TIMEOUT_MS = 30_000;
 /**
  * Return a semantic judge implementation that calls Haiku.
  */
@@ -51,6 +57,12 @@ export function makeHaikuJudge(opts = {}) {
                 isolateAmbientContext: true,
                 ...(opts.repoRoot !== undefined ? { repoRoot: opts.repoRoot, cacheable: true } : {}),
             });
+            if (opts.tally !== undefined) {
+                if (result.cached)
+                    opts.tally.cached += 1;
+                else
+                    opts.tally.fresh += 1;
+            }
             const parsed = result.parsed;
             const resultParsed = VerdictSchema.safeParse(parsed);
             if (!resultParsed.success)
@@ -58,6 +70,8 @@ export function makeHaikuJudge(opts = {}) {
             return resultParsed.data.verdict;
         }
         catch (err) {
+            if (opts.tally !== undefined)
+                opts.tally.errors += 1;
             // Surface ClaudeError (timeout / rate_limit / overloaded / auth) to
             // the resolver so it can trip its circuit breaker and stop calling
             // the judge instead of burning wall-time on doomed retries.

package/dist/init/topic-index/judge.js.map

@@ -1 +1 @@
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package/dist/init/topic-index/resolve.js

@@ -31,13 +31,21 @@ import { logger } from "../../logger.js";
 import { jaccard, tokenize } from "../../text/jaccard.js";
 const log = logger("init.topic-index.resolve");
 /**
- * Bail the rest of phase 7 after this many consecutive judge timeouts —
- * once the Haiku subprocess starts timing out, every subsequent call is
- * very likely to time out too (env / quota / network), and continuing
- * would burn TIMEOUT_MS × pair-count of wall-time. Quota / auth errors
- * trip the breaker on the first occurrence.
+ * Bail the rest of phase 7 after this many consecutive judge failures of
+ * ANY kind. Any sustained failure mode (timeout, overloaded, rate-limited
+ * via wording the regex didn't catch, broken pipe, JSON parse glitch on
+ * every call) means subsequent calls will almost certainly fail too;
+ * continuing would burn `TIMEOUT_MS × pair-count` of wall-time AND mask
+ * the true partial-completion as a successful phase output. Quota / auth
+ * errors trip the breaker on the first occurrence.
+ *
+ * Crucially, a breaker trip caused by quota/auth — or by reaching this
+ * consecutive-fail threshold — surfaces as a thrown error from
+ * `resolveTopics`, not a degraded-but-successful result. Phase 7 wraps
+ * that as `status: "error"` so the orchestrator stops instead of
+ * advancing on a partial topic index.
  */
-const CONSECUTIVE_TIMEOUT_BAIL = 5;
+const CONSECUTIVE_FAIL_BAIL = 5;
 const PRIORITY = {
     doc: 0,
     claudemd: 1,
@@ -110,8 +118,18 @@ export async function resolveTopics(blocks, opts) {
     const concurrency = Math.max(1, opts.judgeConcurrency ?? 5);
     let judgeCalls = 0;
     let unresolvedAmbiguous = 0;
-    let consecutiveTimeouts = 0;
+    let consecutiveFails = 0;
     let judgeBroken = false;
+    /**
+     * First fatal error encountered. Set when:
+     *   - quota/auth error (immediate trip — no point retrying), OR
+     *   - the consecutive-fail threshold trips on any error kind.
+     * Re-thrown after Promise.all so phase 7 surfaces as an error and
+     * the orchestrator does NOT advance on a partial topic index.
+     * Non-fatal soft failures (isolated parse glitch, single timeout)
+     * still count toward `unresolvedAmbiguous` and let the phase finish.
+     */
+    let firstFatalErr = null;
     let nextIdx = 0;
     const sameVerdicts = [];
     const worker = async () => {
@@ -132,24 +150,27 @@ export async function resolveTopics(blocks, opts) {
             judgeCalls += 1;
             try {
                 const verdict = await opts.judge({ a: pair.a, b: pair.b });
-                consecutiveTimeouts = 0;
+                consecutiveFails = 0;
                 if (verdict === "same")
                     sameVerdicts.push({ i: pair.i, j: pair.j });
             }
             catch (err) {
                 unresolvedAmbiguous += 1;
+                consecutiveFails += 1;
                 if (err instanceof ClaudeError) {
                     if (err.kind === "auth" || isQuotaKind(err.kind)) {
                         log.warn({ kind: err.kind }, "phase 7 judge bailed on quota/auth error");
+                        if (firstFatalErr === null)
+                            firstFatalErr = err;
                         judgeBroken = true;
                     }
-                    else if (err.kind === "timeout") {
-                        consecutiveTimeouts += 1;
-                        if (consecutiveTimeouts >= CONSECUTIVE_TIMEOUT_BAIL) {
-                            log.warn({ consecutiveTimeouts }, "phase 7 judge bailed after consecutive timeouts; remaining pairs treated as different");
-                            judgeBroken = true;
-                        }
+                }
+                if (!judgeBroken && consecutiveFails >= CONSECUTIVE_FAIL_BAIL) {
+                    log.warn({ consecutiveFails, errKind: err instanceof ClaudeError ? err.kind : "non-claude" }, "phase 7 judge bailed after consecutive fails; surfacing as phase error");
+                    if (firstFatalErr === null) {
+                        firstFatalErr = err instanceof Error ? err : new Error(String(err));
                     }
+                    judgeBroken = true;
                 }
             }
             if (opts.onProgress !== undefined) {
@@ -158,6 +179,12 @@ export async function resolveTopics(blocks, opts) {
         }
     };
     await Promise.all(Array.from({ length: concurrency }, () => worker()));
+    // Surface fatal failure to phase 7. Doing this before applying merges
+    // / writing topicIndex prevents a partial topic-index from being
+    // written to ground state when quota / auth / sustained failures
+    // mean the resolver never got a clean run.
+    if (firstFatalErr !== null)
+        throw firstFatalErr;
     // Apply union-find merges from successful "same" verdicts. Done after
     // all workers finish so concurrent verdicts can't race the merge map.
     // Order doesn't affect the final equivalence classes — union is

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package/dist/init/types.d.ts

@@ -50,4 +50,13 @@ export interface DetectionResult {
     environment: {
         claude_auth: boolean;
     };
+    /**
+     * True only when the operator is dogfooding Cairn against its own
+     * source repo via the `CAIRN_SELF_ADOPT=1` escape hatch (Phase 1
+     * detect sets this; otherwise the guard refuses adoption). Phases
+     * 8 / 9 / 10 / 12 short-circuit when this is true so the recursive-
+     * ingest scenario (Cairn's own docs / source comments / CLAUDE.md /
+     * essay-class block strip) never runs against the source tree.
+     */
+    is_self_adopt?: boolean;
 }

package/dist/init/walker.d.ts

@@ -31,7 +31,7 @@
  *
  * The mapper turns this into the `<slug>:` extension block (route_handler_globs,
  * dto_globs, generator_source_globs, high_stakes_globs, off_limits_globs,
- * pilot_module, key_modules, proposed_sensors, domain_summary).
+ * key_modules, proposed_sensors, domain_summary).
  */
 export interface ManifestPreview {
     path: string;

package/dist/init/walker.js

@@ -31,7 +31,7 @@
  *
  * The mapper turns this into the `<slug>:` extension block (route_handler_globs,
  * dto_globs, generator_source_globs, high_stakes_globs, off_limits_globs,
- * pilot_module, key_modules, proposed_sensors, domain_summary).
+ * key_modules, proposed_sensors, domain_summary).
  */
 import { execFileSync } from "node:child_process";
 import { existsSync, readFileSync, readdirSync, statSync } from "node:fs";

package/dist/init/workflow-block.d.ts

@@ -5,18 +5,17 @@
  *   1. `.cairn/config.yaml` — the project overlay (built by `init.ts` directly)
  *   2. `.cairn/config/workflow.md` — the `<slug>:` block in YAML frontmatter
  *
- * (2) is shipped as a template with placeholder values (pilot_module: ALL,
- * empty arrays). After seed substitutes `<project_name>:` → `<slug>:`, this
- * module patches the slug block with the mapper's outputs while preserving
- * the rest of the frontmatter (comments, key order, sibling keys) and the
- * markdown body below the closing `---`.
+ * (2) is shipped as a template with empty glob arrays. After seed
+ * substitutes `<project_name>:` → `<slug>:`, this module patches the slug
+ * block with the mapper's outputs while preserving the rest of the
+ * frontmatter (comments, key order, sibling keys) and the markdown body
+ * below the closing `---`.
  *
  * Round-trip uses `yaml`'s `parseDocument` API so comments outside the slug
  * block survive. Comments inside the slug block are dropped on the keys we
  * mutate; that's acceptable because the placeholder block is comment-light.
  */
 export interface WorkflowSlugBlockUpdate {
-    pilot_module?: string;
     route_handler_globs?: string[];
     dto_globs?: string[];
     generator_source_globs?: string[];

package/dist/init/workflow-block.js

@@ -5,11 +5,11 @@
  *   1. `.cairn/config.yaml` — the project overlay (built by `init.ts` directly)
  *   2. `.cairn/config/workflow.md` — the `<slug>:` block in YAML frontmatter
  *
- * (2) is shipped as a template with placeholder values (pilot_module: ALL,
- * empty arrays). After seed substitutes `<project_name>:` → `<slug>:`, this
- * module patches the slug block with the mapper's outputs while preserving
- * the rest of the frontmatter (comments, key order, sibling keys) and the
- * markdown body below the closing `---`.
+ * (2) is shipped as a template with empty glob arrays. After seed
+ * substitutes `<project_name>:` → `<slug>:`, this module patches the slug
+ * block with the mapper's outputs while preserving the rest of the
+ * frontmatter (comments, key order, sibling keys) and the markdown body
+ * below the closing `---`.
  *
  * Round-trip uses `yaml`'s `parseDocument` API so comments outside the slug
  * block survive. Comments inside the slug block are dropped on the keys we
@@ -44,10 +44,6 @@ export function updateWorkflowSlugBlock(args) {
     }
     const applied = [];
     const u = args.update;
-    if (u.pilot_module !== undefined) {
-        slugBlock.set("pilot_module", u.pilot_module);
-        applied.push("pilot_module");
-    }
     if (u.route_handler_globs !== undefined) {
         slugBlock.set("route_handler_globs", doc.createNode(u.route_handler_globs));
         applied.push("route_handler_globs");

package/dist/init/workflow-block.js.map

@@ -1 +1 @@
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package/dist/mcp/bootstrap-guard.js

@@ -66,12 +66,12 @@ export function requireBootstrap(repoRoot) {
     const failedSteps = joinResult.steps
         .filter((s) => s.status === "error")
         .map((s) => `${s.step}: ${s.detail}`);
-    return mcpError("BOOTSTRAP_REQUIRED", "this clone is not bootstrapped and `cairn join` auto-attempt failed — see failed_steps for the underlying cause", {
+    return mcpError("BOOTSTRAP_REQUIRED", "this clone is not bootstrapped and the auto-bootstrap retry failed — see failed_steps for the underlying cause", {
         project_cairn_version: state.projectCairnVersion,
         hooks_path_value: state.hooksPathValue,
         sessions_dir_ready: state.sessionsDirReady,
         failed_steps: failedSteps,
-        remediation: "Re-run manually: `node \"${CLAUDE_PLUGIN_ROOT}/dist/cli.mjs\" join` (or restart Claude Code so SessionStart's bootstrap path retries)",
+        remediation: "Invoke the `cairn_bootstrap_retry` MCP tool to retry inline, or restart Claude Code so SessionStart's bootstrap path retries.",
     });
 }
 //# sourceMappingURL=bootstrap-guard.js.map

package/dist/mcp/bootstrap-guard.js.map

@@ -1 +1 @@
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+{"version":3,"file":"bootstrap-guard.js","sourceRoot":"","sources":["../../src/mcp/bootstrap-guard.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;GAsBG;AAEH,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrC,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAE,gBAAgB,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAC7D,OAAO,EAAE,MAAM,EAAE,MAAM,cAAc,CAAC;AACtC,OAAO,EAAE,QAAQ,EAAwB,MAAM,aAAa,CAAC;AAE7D,MAAM,GAAG,GAAG,MAAM,CAAC,qBAAqB,CAAC,CAAC;AAE1C;;;;;;;;;;;;;;GAcG;AACH,MAAM,UAAU,gBAAgB,CAAC,QAAgB;IAC/C,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;QAAE,OAAO,IAAI,CAAC;IACrD,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,EAAE,QAAQ,EAAE,aAAa,CAAC,CAAC;QAAE,OAAO,IAAI,CAAC;IACtE,MAAM,KAAK,GAAG,gBAAgB,CAAC,EAAE,QAAQ,EAAE,CAAC,CAAC;IAC7C,IAAI,KAAK,CAAC,YAAY;QAAE,OAAO,IAAI,CAAC;IAEpC,uEAAuE;IACvE,gEAAgE;IAChE,mEAAmE;IACnE,oEAAoE;IACpE,8CAA8C;IAC9C,MAAM,UAAU,GAAG,OAAO,CAAC,EAAE,QAAQ,EAAE,CAAC,CAAC;IACzC,IAAI,UAAU,CAAC,YAAY,EAAE,CAAC;QAC5B,GAAG,CAAC,IAAI,CACN,EAAE,QAAQ,EAAE,MAAM,EAAE,oBAAoB,EAAE,EAC1C,+CAA+C,CAChD,CAAC;QACF,OAAO,IAAI,CAAC;IACd,CAAC;IACD,mEAAmE;IACnE,qEAAqE;IACrE,+CAA+C;IAC/C,MAAM,WAAW,GAAG,UAAU,CAAC,KAAK;SACjC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,MAAM,KAAK,OAAO,CAAC;SACnC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC;IACxC,OAAO,QAAQ,CACb,oBAAoB,EACpB,gHAAgH,EAChH;QACE,qBAAqB,EAAE,KAAK,CAAC,mBAAmB;QAChD,gBAAgB,EAAE,KAAK,CAAC,cAAc;QACtC,kBAAkB,EAAE,KAAK,CAAC,gBAAgB;QAC1C,YAAY,EAAE,WAAW;QACzB,WAAW,EACT,+HAA+H;KAClI,CACF,CAAC;AACJ,CAAC"}

package/dist/mcp/schemas.d.ts

@@ -81,6 +81,40 @@ export declare const taskCreateInput: {
     module: z.ZodOptional<z.ZodString>;
     needs_review: z.ZodOptional<z.ZodBoolean>;
 };
+/**
+ * `cairn_task_journal_append` — append a per-turn journal entry. The
+ * journal is the resume-layer record that survives `/clear`. `task_id`
+ * defaults to the most-recently-touched active task.
+ */
+export declare const taskJournalAppendInput: {
+    task_id: z.ZodOptional<z.ZodString>;
+    summary: z.ZodString;
+    next_step: z.ZodOptional<z.ZodString>;
+    files_touched: z.ZodOptional<z.ZodArray<z.ZodString>>;
+    decisions_loaded: z.ZodOptional<z.ZodArray<z.ZodString>>;
+    /** Claude Code session id of the writer, if known. Stamped into the entry. */
+    session_id: z.ZodOptional<z.ZodString>;
+};
+/**
+ * `cairn_resume` — read the resume payload for an active task.
+ */
+export declare const resumeInput: {
+    task_id: z.ZodOptional<z.ZodString>;
+    max_entries: z.ZodOptional<z.ZodNumber>;
+};
+/**
+ * `cairn_task_complete` — graduate an active task to a terminal phase
+ * (succeeded / failed / aborted). Format: `TSK-<slug>-<7-hex>`.
+ */
+export declare const taskCompleteInput: {
+    task_id: z.ZodString;
+    outcome: z.ZodEnum<{
+        aborted: "aborted";
+        succeeded: "succeeded";
+        failed: "failed";
+    }>;
+    summary: z.ZodOptional<z.ZodString>;
+};
 export declare const recordDecisionInput: {
     id: z.ZodOptional<z.ZodString>;
     slug: z.ZodOptional<z.ZodString>;

package/dist/mcp/schemas.js

@@ -82,6 +82,56 @@ export const taskCreateInput = {
     module: z.string().optional(),
     needs_review: z.boolean().optional(),
 };
+/**
+ * `cairn_task_journal_append` — append a per-turn journal entry. The
+ * journal is the resume-layer record that survives `/clear`. `task_id`
+ * defaults to the most-recently-touched active task.
+ */
+export const taskJournalAppendInput = {
+    task_id: z
+        .string()
+        .regex(/^TSK-[a-z0-9-]+-[0-9a-f]{7}$/, "task id must match TSK-<slug>-<7-hex>")
+        .optional(),
+    summary: z
+        .string()
+        .min(1)
+        .max(160, "summary must be ≤160 chars (one-liner)"),
+    next_step: z
+        .string()
+        .max(160, "next_step must be ≤160 chars (one-liner)")
+        .optional(),
+    files_touched: z.array(z.string().min(1)).max(20).optional(),
+    decisions_loaded: z
+        .array(z.string().regex(/^DEC-[0-9a-f]{7,}$/))
+        .max(20)
+        .optional(),
+    /** Claude Code session id of the writer, if known. Stamped into the entry. */
+    session_id: z.string().optional(),
+};
+/**
+ * `cairn_resume` — read the resume payload for an active task.
+ */
+export const resumeInput = {
+    task_id: z
+        .string()
+        .regex(/^TSK-[a-z0-9-]+-[0-9a-f]{7}$/, "task id must match TSK-<slug>-<7-hex>")
+        .optional(),
+    max_entries: z.number().int().min(1).max(50).optional(),
+};
+/**
+ * `cairn_task_complete` — graduate an active task to a terminal phase
+ * (succeeded / failed / aborted). Format: `TSK-<slug>-<7-hex>`.
+ */
+export const taskCompleteInput = {
+    task_id: z
+        .string()
+        .regex(/^TSK-[a-z0-9-]+-[0-9a-f]{7}$/, "task id must match TSK-<slug>-<7-hex>"),
+    outcome: z.enum(["succeeded", "failed", "aborted"]),
+    summary: z
+        .string()
+        .max(500, "summary must be ≤500 chars (one sentence is plenty)")
+        .optional(),
+};
 export const recordDecisionInput = {
     id: z.string().regex(/^DEC-[0-9a-f]{7,}$/).optional(),
     slug: z.string().optional(),

package/dist/mcp/schemas.js.map

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package/dist/mcp/telemetry.d.ts

@@ -4,7 +4,7 @@ import type { McpContext } from "./context.js";
  *   - .cairn/runs/active/<runId>/mcp-calls.jsonl     when ctx.runId set
  *   - .cairn/staleness/mcp-calls.jsonl               otherwise
  *
- * Also mirrors a compact row into the unified `~/.local/cairn/trace/`
+ * Also mirrors a compact row into the unified `~/.cairn/trace/`
  * sink so `cairn trace` aggregates MCP calls alongside hook + claude
  * subprocess events.
  */

package/dist/mcp/tools/bootstrap-retry.d.ts

@@ -0,0 +1,23 @@
+/**
+ * cairn_bootstrap_retry — manual retry for per-clone bootstrap.
+ *
+ * Spec: PLUGIN_ARCHITECTURE §11 (no CLI subcommand exposure to operator) +
+ * §17 Layer 2 (per-clone bootstrap).
+ *
+ * Surface: when `requireBootstrap` returns `BOOTSTRAP_REQUIRED` because
+ * the auto-join path failed (most commonly: hooks dir missing or
+ * `git config core.hooksPath` blocked), this tool re-runs the join
+ * sequence inline so the operator never sees a CLI subcommand. The
+ * `cairn-attention` skill's Step 0 calls this tool when the bootstrap
+ * banner is in `additionalContext`; SessionStart's degraded-mode
+ * banner cites this tool name as the recovery path.
+ *
+ * Idempotent. The bootstrap guard is intentionally NOT called here —
+ * its sole purpose is to retry bootstrap, so guarding it would be a
+ * loop.
+ */
+import type { ToolDef } from "./types.js";
+interface Input {
+}
+export declare const bootstrapRetryTool: ToolDef<Input>;
+export {};