@isaacriehm/cairn-core 0.4.3 → 0.6.0

package/dist/align-undo/undo.js

@@ -0,0 +1,397 @@
+/**
+ * `cairn attention undo` runner (plan §11.7).
+ *
+ * Reverses Layer A auto-resolutions logged at
+ * `.cairn/state/align-undo-log.jsonl`. The CLI passes `--since
+ * <duration>` (default 1h); only entries within the window are
+ * undone, the rest stay in the log.
+ *
+ * Reverses:
+ *
+ *   - `tier1-cite` / `tier2-cite` — find the cite line in the current
+ *     source, swap it back for the original prose block. Idempotent
+ *     when the source has been hand-edited away from the cite already.
+ *
+ *   - `tier3-creation` — delete the freshly-emitted DEC/INV file, drop
+ *     its sot-bindings / sot-cache entries, clear the topic-index
+ *     reference, refresh the affected ledger, and restore the source
+ *     prose at the recorded offsets. All mutations run under
+ *     `withWriteLock` so a parallel Layer A hook can't slip in
+ *     mid-rollback.
+ *
+ *   - `augments` — delete the sibling DEC/INV (steps mirror
+ *     tier3-creation), then trim the double-cite line in source down to
+ *     the existing-id cite (the augmented entity stays referenced).
+ *
+ * Idempotent: the runner truncates undone entries from the log so a
+ * second invocation against the same window is a no-op.
+ */
+import { existsSync, readFileSync, rmSync, writeFileSync } from "node:fs";
+import { join } from "node:path";
+import { clearDecFromTopicIndex, decisionsDir, deleteSotCacheEntry, invariantsDir, readSotBindings, readSotCache, readTopicIndex, unbindDec, writeSotBindings, writeSotCache, writeTopicIndex, } from "../ground/index.js";
+import { writeDecisionsLedger, writeInvariantsLedger } from "../ground/ledgers.js";
+import { withWriteLock } from "../lock.js";
+import { logger } from "../logger.js";
+import { pruneAlignUndoLog, readAlignUndoLog, } from "./log.js";
+const log = logger("align-undo.runner");
+const DEFAULT_SINCE_MS = 60 * 60 * 1_000;
+/* -------------------------------------------------------------------------- */
+/* Run                                                                        */
+/* -------------------------------------------------------------------------- */
+export async function runAttentionUndo(args) {
+    const { repoRoot } = args;
+    const sinceMs = args.sinceMs ?? DEFAULT_SINCE_MS;
+    const dryRun = args.dryRun === true;
+    const cutoff = Date.now() - sinceMs;
+    const all = readAlignUndoLog(repoRoot);
+    const inside = [];
+    const outside = [];
+    for (const e of all) {
+        const tsMs = Date.parse(e.ts);
+        if (Number.isFinite(tsMs) && tsMs >= cutoff) {
+            inside.push(e);
+        }
+        else {
+            outside.push(e);
+        }
+    }
+    const outcomes = [];
+    // Process newest first — undoing in reverse order matches typical
+    // operator intent ("undo my last 5 minutes of cites").
+    inside.sort((a, b) => Date.parse(b.ts) - Date.parse(a.ts));
+    for (const entry of inside) {
+        outcomes.push(await reverseEntry(repoRoot, entry, dryRun));
+    }
+    const result = {
+        windowEntries: inside.length,
+        outsideWindow: outside.length,
+        outcomes,
+        reverted: outcomes.filter((o) => o.status === "reverted").length,
+        alreadyReverted: outcomes.filter((o) => o.status === "already-reverted").length,
+        notSupported: outcomes.filter((o) => o.status === "not-supported").length,
+        sourceMissing: outcomes.filter((o) => o.status === "source-missing").length,
+        errors: outcomes.filter((o) => o.status === "error").length,
+    };
+    if (!dryRun) {
+        // Keep entries that we couldn't undo (not-supported / errors) so
+        // the operator can re-attempt or hand-resolve. Entries we
+        // reverted (or that were already reverted) are removed.
+        const keep = [
+            ...outside,
+            ...outcomes
+                .filter((o) => o.status === "not-supported" || o.status === "error")
+                .map((o) => o.entry),
+        ];
+        await pruneAlignUndoLog(repoRoot, keep);
+    }
+    return result;
+}
+/* -------------------------------------------------------------------------- */
+/* Per-entry reversal                                                         */
+/* -------------------------------------------------------------------------- */
+async function reverseEntry(repoRoot, entry, dryRun) {
+    if (entry.kind === "tier3-creation") {
+        return reverseTier3Creation(repoRoot, entry, dryRun);
+    }
+    if (entry.kind === "augments") {
+        return reverseAugments(repoRoot, entry, dryRun);
+    }
+    return reverseCite(repoRoot, entry, dryRun);
+}
+function reverseCite(repoRoot, entry, dryRun) {
+    const abs = join(repoRoot, entry.file);
+    if (!existsSync(abs)) {
+        return { entry, status: "source-missing", detail: `${entry.file} no longer exists` };
+    }
+    let source;
+    try {
+        source = readFileSync(abs, "utf8");
+    }
+    catch (err) {
+        return {
+            entry,
+            status: "error",
+            detail: `cannot read ${entry.file}: ${err instanceof Error ? err.message : String(err)}`,
+        };
+    }
+    // Locate the cite line in the current source. The exact byte offsets
+    // recorded at log-time are stale (the strip-replace re-flowed the
+    // file), so we search for the literal replacement string instead.
+    const replacement = entry.replacement.trimEnd();
+    const idx = source.indexOf(replacement);
+    if (idx === -1) {
+        // Already hand-edited away — operator removed the cite themselves.
+        return {
+            entry,
+            status: "already-reverted",
+            detail: `cite "${replacement.trim()}" not found in ${entry.file}`,
+        };
+    }
+    // Swap the replacement (matched + any trailing whitespace until newline) for the original raw.
+    // Replacement is typically a one-liner like "// §DEC-aaaaaaa"; we
+    // want to preserve indentation if the original raw had any.
+    const lineStart = source.lastIndexOf("\n", idx) + 1;
+    const lineEnd = source.indexOf("\n", idx + replacement.length);
+    const cutEnd = lineEnd === -1 ? source.length : lineEnd;
+    const before = source.slice(0, lineStart);
+    const after = source.slice(cutEnd);
+    // Match the indentation that strip-replace prepended on the cite —
+    // leading whitespace from `lineStart` up to the `idx`.
+    const indent = source.slice(lineStart, idx);
+    const reflowedOriginal = reapplyIndent(entry.original_raw, indent);
+    const next = `${before}${reflowedOriginal}${after}`;
+    if (!dryRun) {
+        try {
+            writeFileSync(abs, next, "utf8");
+        }
+        catch (err) {
+            log.warn({ file: entry.file, err: err instanceof Error ? err.message : String(err) }, "align-undo write failed");
+            return {
+                entry,
+                status: "error",
+                detail: `cannot write ${entry.file}: ${err instanceof Error ? err.message : String(err)}`,
+            };
+        }
+    }
+    return { entry, status: "reverted", detail: `${entry.file}` };
+}
+/**
+ * Reverse a tier3-creation undo entry — Layer A spawned a fresh
+ * DEC/INV from this prose block, strip-replaced the source with a
+ * cite. Rolling back deletes the entity file, drops every sot-state
+ * surface that referenced it, and restores the source block.
+ */
+async function reverseTier3Creation(repoRoot, entry, dryRun) {
+    const kind = derivePrimaryKind(entry);
+    const entityDir = kind === "INV" ? invariantsDir(repoRoot) : decisionsDir(repoRoot);
+    const entityPath = join(entityDir, `${entry.primary_id}.md`);
+    const sourceCheck = checkSourceForReversal(repoRoot, entry);
+    if (sourceCheck.status !== "ready") {
+        const { status, detail } = sourceCheck;
+        return { entry, status, detail };
+    }
+    if (dryRun) {
+        return {
+            entry,
+            status: "reverted",
+            detail: `[dry-run] would delete ${kind === "INV" ? "INV" : "DEC"} ${entry.primary_id} + restore ${entry.file}`,
+        };
+    }
+    try {
+        await withWriteLock(repoRoot, () => {
+            // Source restore first so a partial failure doesn't leave the
+            // operator with an orphaned cite pointing at a deleted entity.
+            writeFileSync(sourceCheck.absSource, sourceCheck.next, "utf8");
+            // Entity removal — `force: true` so an already-deleted file is a no-op.
+            rmSync(entityPath, { force: true });
+            let bindings = readSotBindings(repoRoot);
+            const nextBindings = unbindDec(bindings, entry.primary_id);
+            if (nextBindings !== bindings) {
+                bindings = nextBindings;
+                writeSotBindings(repoRoot, bindings);
+            }
+            let cache = readSotCache(repoRoot);
+            const nextCache = deleteSotCacheEntry(cache, entry.primary_id);
+            if (nextCache !== cache) {
+                cache = nextCache;
+                writeSotCache(repoRoot, cache);
+            }
+            let topics = readTopicIndex(repoRoot);
+            const nextTopics = clearDecFromTopicIndex(topics, entry.primary_id);
+            if (nextTopics !== topics) {
+                topics = nextTopics;
+                writeTopicIndex(repoRoot, topics);
+            }
+            if (kind === "INV") {
+                writeInvariantsLedger({ repoRoot });
+            }
+            else {
+                writeDecisionsLedger({ repoRoot });
+            }
+        });
+    }
+    catch (err) {
+        log.warn({ file: entry.file, primary_id: entry.primary_id, err: err instanceof Error ? err.message : String(err) }, "tier3-creation undo failed");
+        return {
+            entry,
+            status: "error",
+            detail: `tier3-creation undo failed: ${err instanceof Error ? err.message : String(err)}`,
+        };
+    }
+    return {
+        entry,
+        status: "reverted",
+        detail: `deleted ${kind} ${entry.primary_id} + restored ${entry.file}`,
+    };
+}
+/**
+ * Reverse an augments undo entry — Layer A emitted a sibling DEC/INV
+ * alongside an existing one and stamped the source with a double-cite
+ * (`// §existing\n// §new`). Rolling back deletes the sibling and
+ * trims the source line down to the existing cite.
+ */
+async function reverseAugments(repoRoot, entry, dryRun) {
+    const kind = derivePrimaryKind(entry);
+    const entityDir = kind === "INV" ? invariantsDir(repoRoot) : decisionsDir(repoRoot);
+    const entityPath = join(entityDir, `${entry.primary_id}.md`);
+    // The replacement is `<existingCite>\n<newCite>` — first line is the
+    // cite we want to keep, second line is the sibling cite to drop.
+    const replacement = entry.replacement.trimEnd();
+    const newlineIdx = replacement.indexOf("\n");
+    if (newlineIdx === -1) {
+        return {
+            entry,
+            status: "error",
+            detail: `augments replacement missing newline boundary: ${replacement}`,
+        };
+    }
+    const keepCite = replacement.slice(0, newlineIdx);
+    const sourceAbs = join(repoRoot, entry.file);
+    if (!existsSync(sourceAbs)) {
+        return { entry, status: "source-missing", detail: `${entry.file} no longer exists` };
+    }
+    let source;
+    try {
+        source = readFileSync(sourceAbs, "utf8");
+    }
+    catch (err) {
+        return {
+            entry,
+            status: "error",
+            detail: `cannot read ${entry.file}: ${err instanceof Error ? err.message : String(err)}`,
+        };
+    }
+    const idx = source.indexOf(replacement);
+    if (idx === -1) {
+        return {
+            entry,
+            status: "already-reverted",
+            detail: `double-cite "${replacement.trim()}" not found in ${entry.file}`,
+        };
+    }
+    const next = `${source.slice(0, idx)}${keepCite}${source.slice(idx + replacement.length)}`;
+    if (dryRun) {
+        return {
+            entry,
+            status: "reverted",
+            detail: `[dry-run] would delete sibling ${kind} ${entry.primary_id} + trim double-cite in ${entry.file}`,
+        };
+    }
+    try {
+        await withWriteLock(repoRoot, () => {
+            writeFileSync(sourceAbs, next, "utf8");
+            rmSync(entityPath, { force: true });
+            let bindings = readSotBindings(repoRoot);
+            const nextBindings = unbindDec(bindings, entry.primary_id);
+            if (nextBindings !== bindings) {
+                bindings = nextBindings;
+                writeSotBindings(repoRoot, bindings);
+            }
+            let cache = readSotCache(repoRoot);
+            const nextCache = deleteSotCacheEntry(cache, entry.primary_id);
+            if (nextCache !== cache) {
+                cache = nextCache;
+                writeSotCache(repoRoot, cache);
+            }
+            let topics = readTopicIndex(repoRoot);
+            const nextTopics = clearDecFromTopicIndex(topics, entry.primary_id);
+            if (nextTopics !== topics) {
+                topics = nextTopics;
+                writeTopicIndex(repoRoot, topics);
+            }
+            if (kind === "INV") {
+                writeInvariantsLedger({ repoRoot });
+            }
+            else {
+                writeDecisionsLedger({ repoRoot });
+            }
+        });
+    }
+    catch (err) {
+        log.warn({ file: entry.file, primary_id: entry.primary_id, err: err instanceof Error ? err.message : String(err) }, "augments undo failed");
+        return {
+            entry,
+            status: "error",
+            detail: `augments undo failed: ${err instanceof Error ? err.message : String(err)}`,
+        };
+    }
+    return {
+        entry,
+        status: "reverted",
+        detail: `deleted sibling ${kind} ${entry.primary_id} + trimmed double-cite in ${entry.file}`,
+    };
+}
+/**
+ * Helper for tier3-creation: precompute the source-restore content so
+ * a missing source surfaces before we touch the entity files. Returns
+ * the restored source text + abs path on success, or a non-`reverted`
+ * outcome status.
+ */
+function checkSourceForReversal(repoRoot, entry) {
+    const abs = join(repoRoot, entry.file);
+    if (!existsSync(abs)) {
+        return { status: "source-missing", detail: `${entry.file} no longer exists` };
+    }
+    let source;
+    try {
+        source = readFileSync(abs, "utf8");
+    }
+    catch (err) {
+        return {
+            status: "error",
+            detail: `cannot read ${entry.file}: ${err instanceof Error ? err.message : String(err)}`,
+        };
+    }
+    const replacement = entry.replacement.trimEnd();
+    const idx = source.indexOf(replacement);
+    if (idx === -1) {
+        return {
+            status: "already-reverted",
+            detail: `cite "${replacement.trim()}" not found in ${entry.file}`,
+        };
+    }
+    const lineStart = source.lastIndexOf("\n", idx) + 1;
+    const lineEnd = source.indexOf("\n", idx + replacement.length);
+    const cutEnd = lineEnd === -1 ? source.length : lineEnd;
+    const indent = source.slice(lineStart, idx);
+    const reflowedOriginal = reapplyIndent(entry.original_raw, indent);
+    const next = `${source.slice(0, lineStart)}${reflowedOriginal}${source.slice(cutEnd)}`;
+    return { status: "ready", absSource: abs, next };
+}
+function derivePrimaryKind(entry) {
+    if (entry.primary_kind !== undefined)
+        return entry.primary_kind;
+    return entry.primary_id.startsWith("INV-") ? "INV" : "DEC";
+}
+/**
+ * Re-apply the leading indent that the cite line carried so the
+ * restored original block lines up at the right column. Most blocks'
+ * raw already includes the full indentation — we only prepend `indent`
+ * to lines that start without it, which handles JSDoc / line-comment
+ * blocks captured at column 0.
+ */
+function reapplyIndent(raw, indent) {
+    if (indent.length === 0)
+        return raw;
+    const lines = raw.split("\n");
+    const out = [];
+    let isFirst = true;
+    for (const line of lines) {
+        if (isFirst) {
+            out.push(line);
+            isFirst = false;
+            continue;
+        }
+        if (line.length === 0) {
+            out.push(line);
+            continue;
+        }
+        if (line.startsWith(indent) || /^\s/.test(line)) {
+            out.push(line);
+            continue;
+        }
+        out.push(`${indent}${line}`);
+    }
+    return out.join("\n");
+}
+//# sourceMappingURL=undo.js.map

package/dist/align-undo/undo.js.map

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package/dist/attention/bulk-accept.js

@@ -27,11 +27,13 @@
  * strip-replace pass on accepted source-comment drafts so the §INV /
  * §DEC citations land in the original source.
  */
-import { existsSync, mkdirSync, readFileSync, readdirSync, rmSync, writeFileSync, } from "node:fs";
-import { dirname, join } from "node:path";
-import { parse as parseYaml, stringify as stringifyYaml } from "yaml";
+import { existsSync, readFileSync, readdirSync, rmSync, writeFileSync, } from "node:fs";
+import { join } from "node:path";
+import { writeFileSafe } from "../fs.js";
+import { stringify as stringifyYaml } from "yaml";
 import { decisionsDir, invariantsDir } from "../ground/paths.js";
 import { writeDecisionsLedger } from "../ground/ledgers.js";
+import { parseFrontmatterRecord } from "../ground/frontmatter.js";
 import { withWriteLock } from "../lock.js";
 import { scoreDecDraft, scoreInvariant, } from "./scoring.js";
 import { runDecSourceStrip } from "./source-strip.js";
@@ -69,7 +71,7 @@ export async function bulkAcceptObvious(args) {
                     catch {
                         continue;
                     }
-                    const fm = parseFrontmatter(raw);
+                    const fm = parseFrontmatterRecord(raw).fm;
                     const body = stripFrontmatter(raw);
                     const id = stringField(fm, "id") ?? e.name.replace(/\.draft\.md$/, "");
                     const sourceFile = stringField(fm, "sourceFile") ?? "";
@@ -95,8 +97,7 @@ export async function bulkAcceptObvious(args) {
                         const acceptedBody = renderDoc(acceptedFm, body);
                         const acceptedPath = join(decisionsDir(args.repoRoot), `${id}.md`);
                         if (!dry) {
-                            mkdirSync(dirname(acceptedPath), { recursive: true });
-                            writeFileSync(acceptedPath, acceptedBody, "utf8");
+                            writeFileSafe(acceptedPath, acceptedBody);
                             try {
                                 rmSync(abs, { force: true });
                             }
@@ -194,7 +195,7 @@ export async function bulkAcceptObvious(args) {
                     catch {
                         continue;
                     }
-                    const fm = parseFrontmatter(raw);
+                    const fm = parseFrontmatterRecord(raw).fm;
                     const body = stripFrontmatter(raw);
                     const sourceFile = stringField(fm, "sourceFile") ?? "";
                     const titleFm = stringField(fm, "title") ?? "";
@@ -227,7 +228,7 @@ export async function bulkAcceptObvious(args) {
                 catch {
                     continue;
                 }
-                const fm = parseFrontmatter(raw);
+                const fm = parseFrontmatterRecord(raw).fm;
                 const body = stripFrontmatter(raw);
                 const sourceFile = stringField(fm, "sourceFile") ?? "";
                 const titleFm = stringField(fm, "title") ?? "";
@@ -253,20 +254,6 @@ export async function bulkAcceptObvious(args) {
     };
 }
 // ── Helpers ────────────────────────────────────────────────────────
-function parseFrontmatter(doc) {
-    const m = doc.match(/^---\n([\s\S]*?)\n---/);
-    if (m === null || m[1] === undefined)
-        return {};
-    try {
-        const parsed = parseYaml(m[1]);
-        return typeof parsed === "object" && parsed !== null
-            ? parsed
-            : {};
-    }
-    catch {
-        return {};
-    }
-}
 function stripFrontmatter(doc) {
     return doc.replace(/^---\n[\s\S]*?\n---\n?/, "");
 }

package/dist/attention/bulk-accept.js.map

@@ -1 +1 @@
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package/dist/attention/dedup.js

@@ -20,55 +20,9 @@
 import { existsSync, readFileSync, readdirSync, statSync } from "node:fs";
 import { join } from "node:path";
 import { decisionsDir } from "../ground/paths.js";
-/* -------------------------------------------------------------------------- */
-/* Tokenization                                                               */
-/* -------------------------------------------------------------------------- */
-/**
- * Stopwords. Hard-coded English set plus a handful of cairn-domain
- * terms that appear in nearly every draft and would otherwise dominate
- * Jaccard scores ("rationale", "decision").
- */
-const STOPWORDS = new Set([
-    "the", "a", "an", "and", "or", "of", "in", "on", "to", "for", "with",
-    "by", "from", "is", "are", "was", "were", "be", "been", "being", "has",
-    "have", "had", "do", "does", "did", "this", "that", "these", "those",
-    "it", "its", "as", "at", "but", "if", "than", "so", "use", "used",
-    "using", "via", "out", "off", "up", "our", "their", "one", "two",
-    "when", "where", "what", "how", "why", "who", "which", "can", "should",
-    "must", "will", "shall", "may", "not", "no", "any", "all", "some",
-    "few", "more", "most", "only", "also",
-]);
+import { jaccard, tokenize } from "../text/jaccard.js";
 /** Default char window of body to fold into the token bag. */
 const BODY_CHAR_WINDOW = 500;
-function stem(w) {
-    if (w.length <= 4)
-        return w;
-    if (w.endsWith("ing"))
-        return w.slice(0, -3);
-    if (w.endsWith("ed"))
-        return w.slice(0, -2);
-    if (w.endsWith("s") && !w.endsWith("ss"))
-        return w.slice(0, -1);
-    return w;
-}
-function tokenize(text) {
-    return new Set(text
-        .toLowerCase()
-        .replace(/[^a-z0-9\s]/g, " ")
-        .split(/\s+/)
-        .map(stem)
-        .filter((w) => w.length >= 3 && !STOPWORDS.has(w)));
-}
-function jaccard(a, b) {
-    if (a.size === 0 && b.size === 0)
-        return 0;
-    let inter = 0;
-    for (const x of a)
-        if (b.has(x))
-            inter += 1;
-    const union = a.size + b.size - inter;
-    return union === 0 ? 0 : inter / union;
-}
 function parseMinimalFrontmatter(raw) {
     const m = raw.match(/^---\n([\s\S]*?)\n---\n?([\s\S]*)$/);
     if (m === null || m[1] === undefined || m[2] === undefined) {

package/dist/attention/dedup.js.map

@@ -1 +1 @@
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