@isaacriehm/cairn-core 0.4.3 → 0.5.0

package/dist/init/topic-index/walk.js

@@ -0,0 +1,293 @@
+/**
+ * Phase 5b — cross-source prose-block walker.
+ *
+ * Discovers every prose block across the narrative-bearing source kinds
+ * the SoT model recognizes. Doc discovery is layout-agnostic: any
+ * `.md` file outside the rule-owned set + skip dirs counts as a doc.
+ * That covers `docs/`, `documentation/`, `official_docs/`,
+ * `architecture/`, `notes/`, root-level READMEs, custom-named folders
+ * — anything an operator might use without cairn dictating naming.
+ *
+ *   - any reachable `.md` (excluding rule paths + skip dirs)
+ *                                            kind = "doc",         paragraph-granularity
+ *   - CLAUDE.md                              kind = "claudemd",    H2/H3-section-granularity
+ *   - AGENTS.md                              kind = "agentsmd",    H2/H3-section-granularity
+ *   - .claude/rules/*.md                     kind = "rule",        H2/H3-section-granularity
+ *
+ * Source comments (kind = "source-comment") are reached through the
+ * existing phase 7b walker and folded into the topic-index lazily by
+ * phase 7b itself; phase 5b builds the doc / rules slice up front.
+ *
+ * The Haiku classifier in phase 6 filters non-binding doc paragraphs
+ * (release notes, tutorials, raw API references) by returning
+ * kind=other, so being permissive here doesn't pollute the ledger.
+ */
+import { existsSync, readFileSync, readdirSync, statSync } from "node:fs";
+import { join, relative } from "node:path";
+import { bodyContentHash, normalizeBlock, topicSlug } from "../../ground/slug.js";
+const MIN_BLOCK_CHARS = 80;
+const MIN_UNIQUE_TOKENS = 10;
+const SKIP_DIRS = new Set([
+    "node_modules",
+    ".git",
+    ".cairn",
+    "dist",
+    "build",
+    "out",
+    ".next",
+    ".turbo",
+    ".cache",
+    "coverage",
+    ".archive",
+    ".pnpm-store",
+    ".yarn",
+    "vendor",
+    "target",
+    ".gradle",
+    ".idea",
+    ".vscode",
+]);
+/** Files owned by phase 7c (rules merge); excluded from the doc walk. */
+const RULE_OWNED_FILES = new Set(["CLAUDE.md", "AGENTS.md"]);
+/** Directory paths owned by phase 7c (relative to repo root). */
+const RULE_OWNED_DIRS = [".claude/rules"];
+/* -------------------------------------------------------------------------- */
+/* Public entry point                                                         */
+/* -------------------------------------------------------------------------- */
+export function walkProseBlocks(repoRoot) {
+    const blocks = [];
+    blocks.push(...walkDocs(repoRoot));
+    blocks.push(...walkRoot(repoRoot, "CLAUDE.md", "claudemd"));
+    blocks.push(...walkRoot(repoRoot, "AGENTS.md", "agentsmd"));
+    blocks.push(...walkRulesDir(repoRoot));
+    return blocks;
+}
+/* -------------------------------------------------------------------------- */
+/* Any reachable *.md (excluding rule-owned paths) → kind="doc"               */
+/*                                                                            */
+/* Layout-agnostic: walks the repo root and yields every markdown file        */
+/* that isn't claimed by phase 7c (CLAUDE.md / AGENTS.md / .claude/rules/*)   */
+/* and isn't inside a skip dir. Operator's chosen layout — `docs/`,           */
+/* `documentation/`, `notes/`, custom-named folder, root-level READMEs —      */
+/* all flow through this single discovery without configuration.              */
+/* -------------------------------------------------------------------------- */
+function walkDocs(repoRoot) {
+    const out = [];
+    const ruleOwnedAbs = new Set(RULE_OWNED_DIRS.map((d) => join(repoRoot, d)));
+    const stack = [repoRoot];
+    while (stack.length > 0) {
+        const dir = stack.pop();
+        if (dir === undefined)
+            break;
+        if (ruleOwnedAbs.has(dir))
+            continue;
+        let entries;
+        try {
+            entries = readdirSync(dir, { withFileTypes: true, encoding: "utf8" });
+        }
+        catch {
+            continue;
+        }
+        for (const ent of entries) {
+            if (SKIP_DIRS.has(ent.name))
+                continue;
+            const abs = join(dir, ent.name);
+            if (ent.isDirectory()) {
+                if (ruleOwnedAbs.has(abs))
+                    continue;
+                stack.push(abs);
+                continue;
+            }
+            if (!ent.isFile() || !ent.name.endsWith(".md"))
+                continue;
+            const rel = relative(repoRoot, abs);
+            if (RULE_OWNED_FILES.has(rel))
+                continue;
+            out.push(...extractParagraphs(rel, abs, "doc"));
+        }
+    }
+    return out;
+}
+/* -------------------------------------------------------------------------- */
+/* CLAUDE.md / AGENTS.md / rule files — H2/H3-section granularity             */
+/* -------------------------------------------------------------------------- */
+function walkRoot(repoRoot, name, kind) {
+    const file = join(repoRoot, name);
+    if (!existsSync(file) || !statSync(file).isFile())
+        return [];
+    return extractSections(name, file, kind);
+}
+function walkRulesDir(repoRoot) {
+    const dir = join(repoRoot, ".claude", "rules");
+    if (!existsSync(dir))
+        return [];
+    const out = [];
+    for (const file of listMarkdown(dir)) {
+        const rel = relative(repoRoot, file);
+        out.push(...extractSections(rel, file, "rule"));
+    }
+    return out;
+}
+/* -------------------------------------------------------------------------- */
+/* Markdown extraction                                                        */
+/* -------------------------------------------------------------------------- */
+function listMarkdown(dir) {
+    const out = [];
+    let entries;
+    try {
+        entries = readdirSync(dir, { withFileTypes: true, encoding: "utf8" });
+    }
+    catch {
+        return [];
+    }
+    for (const ent of entries) {
+        if (SKIP_DIRS.has(ent.name))
+            continue;
+        const full = join(dir, ent.name);
+        if (ent.isDirectory()) {
+            out.push(...listMarkdown(full));
+        }
+        else if (ent.isFile() && ent.name.endsWith(".md")) {
+            out.push(full);
+        }
+    }
+    return out;
+}
+function readBodyAndFrontmatter(file) {
+    const raw = readFileSync(file, "utf8");
+    const m = raw.match(/^---\n([\s\S]*?)\n---\n?/);
+    if (m === null)
+        return { body: raw, offsetLines: 0 };
+    const offset = (m[0].match(/\n/g) ?? []).length;
+    return { body: raw.slice(m[0].length), offsetLines: offset };
+}
+function extractParagraphs(rel, file, kind) {
+    const { body, offsetLines } = readBodyAndFrontmatter(file);
+    const lines = body.split("\n");
+    const out = [];
+    let bufStart = null;
+    let buf = [];
+    const flush = (endLineZero) => {
+        if (bufStart === null || buf.length === 0)
+            return;
+        const startLine = bufStart + offsetLines + 1;
+        const endLine = endLineZero + offsetLines + 1;
+        const text = buf.join("\n").trim();
+        bufStart = null;
+        buf = [];
+        if (text.length === 0)
+            return;
+        if (!isMeaningfulBlock(text))
+            return;
+        const titleSource = text.split("\n")[0] ?? text;
+        const title = titleSource.replace(/^#+\s*/, "").trim().slice(0, 120) || "(untitled)";
+        const slug = topicSlug(text);
+        const block = {
+            file: rel,
+            kind,
+            title,
+            line_range: [startLine, endLine],
+            body: text,
+            content_hash: bodyContentHash(text),
+            slug,
+        };
+        const anchor = headingToAnchor(titleSource);
+        if (anchor !== null)
+            block.anchor = anchor;
+        out.push(block);
+    };
+    for (let i = 0; i < lines.length; i += 1) {
+        const line = lines[i] ?? "";
+        if (line.trim().length === 0) {
+            flush(i - 1);
+            continue;
+        }
+        if (bufStart === null)
+            bufStart = i;
+        buf.push(line);
+    }
+    flush(lines.length - 1);
+    return out;
+}
+function extractSections(rel, file, kind) {
+    const { body, offsetLines } = readBodyAndFrontmatter(file);
+    const lines = body.split("\n");
+    const out = [];
+    let sectionStart = null;
+    let sectionTitle = "";
+    let sectionAnchor;
+    let sectionBuf = [];
+    const flush = (endLineZero) => {
+        if (sectionStart === null)
+            return;
+        const startLine = sectionStart + offsetLines + 1;
+        const endLine = endLineZero + offsetLines + 1;
+        const bodyText = sectionBuf.join("\n").trim();
+        const titleSnap = sectionTitle;
+        const anchorSnap = sectionAnchor;
+        sectionStart = null;
+        sectionTitle = "";
+        sectionAnchor = undefined;
+        sectionBuf = [];
+        if (bodyText.length === 0)
+            return;
+        if (!isMeaningfulBlock(bodyText))
+            return;
+        const slug = topicSlug(bodyText);
+        const block = {
+            file: rel,
+            kind,
+            title: titleSnap || "(untitled section)",
+            line_range: [startLine, endLine],
+            body: bodyText,
+            content_hash: bodyContentHash(bodyText),
+            slug,
+        };
+        if (anchorSnap !== undefined)
+            block.anchor = anchorSnap;
+        out.push(block);
+    };
+    for (let i = 0; i < lines.length; i += 1) {
+        const line = lines[i] ?? "";
+        const headingMatch = line.match(/^(#{2,3})\s+(.+?)\s*$/);
+        if (headingMatch !== null) {
+            flush(i - 1);
+            const titleText = headingMatch[2] ?? "";
+            sectionStart = i;
+            sectionTitle = titleText;
+            const anchorComputed = headingToAnchor(line);
+            if (anchorComputed !== null)
+                sectionAnchor = anchorComputed;
+            continue;
+        }
+        if (sectionStart !== null)
+            sectionBuf.push(line);
+    }
+    flush(lines.length - 1);
+    return out;
+}
+/* -------------------------------------------------------------------------- */
+/* Helpers                                                                    */
+/* -------------------------------------------------------------------------- */
+function isMeaningfulBlock(text) {
+    if (text.length < MIN_BLOCK_CHARS)
+        return false;
+    const normalized = normalizeBlock(text);
+    const tokens = new Set(normalized
+        .replace(/[^a-z0-9\s]/g, " ")
+        .split(/\s+/)
+        .filter((w) => w.length >= 3));
+    return tokens.size >= MIN_UNIQUE_TOKENS;
+}
+function headingToAnchor(line) {
+    const m = line.match(/^#+\s+(.+?)\s*$/);
+    if (m === null || m[1] === undefined)
+        return null;
+    const slug = m[1]
+        .toLowerCase()
+        .replace(/[^a-z0-9\s-]/g, "")
+        .trim()
+        .replace(/\s+/g, "-");
+    return slug.length === 0 ? null : slug;
+}
+//# sourceMappingURL=walk.js.map

package/dist/init/topic-index/walk.js.map

@@ -0,0 +1 @@
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package/dist/mcp/schemas.d.ts

@@ -47,9 +47,9 @@ export declare const searchInput: {
     scope: z.ZodOptional<z.ZodArray<z.ZodString>>;
     kinds: z.ZodOptional<z.ZodArray<z.ZodEnum<{
         invariant: "invariant";
+        doc: "doc";
         decision: "decision";
         task: "task";
-        doc: "doc";
         run: "run";
         manifest: "manifest";
     }>>>;
@@ -115,23 +115,45 @@ export declare const resolveAttentionInput: {
      *
      * For kind=bypass, item_id is the full SHA of the FIRST flagged commit
      * (the rest go in flagged_items). For kind=review, item_id is the
-     * task_id of the FIRST pending review.
+     * task_id of the FIRST pending review. For kind=conflict, item_id is
+     * the conflict filename slug `<a-id>__<b-id>` (without `.md`).
      */
     item_id: z.ZodString;
-    /** Operator's pick from the inline A/B/C. */
+    /**
+     * Operator's pick from the inline A/B/C/D. The fourth slot is only
+     * meaningful for `conflict` kind (archive-both per plan §5.4.1); other
+     * kinds reject `d`.
+     */
     choice: z.ZodEnum<{
         a: "a";
-        b: "b";
+        d: "d";
         c: "c";
+        b: "b";
     }>;
     /**
      * Item kind — narrows the resolution path. The skill knows the kind
      * from the item it surfaced.
      *
-     * `bypass`  — Stop hook surfaced N commits not in `.attested-commits`.
-     *             choice=a record-bypass (DEC), b accept-as-noted, c defer.
-     * `review`  — Stop hook surfaced N pending reviewer attestations.
-     *             choice=a spawn-now, b skip, c defer.
+     * `bypass`   — Stop hook surfaced N commits not in `.attested-commits`.
+     *              choice=a record-bypass (DEC), b accept-as-noted, c defer.
+     * `review`   — Stop hook surfaced N pending reviewer attestations.
+     *              choice=a spawn-now, b skip, c defer.
+     * `conflict` — Phase 7c contradiction judge wrote a conflict file.
+     *              choice=a keep A (supersede B), b keep B (supersede A),
+     *              c merge into a fresh DEC (both old superseded),
+     *              d archive both (move conflict file to _archived/).
+     *              Plan §5.4.1 — never rewrites source files.
+     * `alignment_pending` — Layer A's Pass-2 dedup or creation judge stayed
+     *              ambiguous and wrote `.cairn/ground/alignment-pending/<slug>.md`
+     *              for operator triage (plan §4.1.A / §4.1.B).
+     *              For tier2-ambiguous (paired with an existing entity):
+     *                a=same (cite existing + strip), b=augments (sibling DEC
+     *                linked via `related` + double-cite), c=new (fresh DEC),
+     *                d=replace (new supersedes existing).
+     *              For tier3-ambiguous (no candidate):
+     *                a=decision (fresh DEC + cite), b=constraint (fresh INV
+     *                + cite), c=descriptive (drop pending, leave source),
+     *                d=none-of-these (drop pending, leave source untouched).
      */
     kind: z.ZodEnum<{
         drift: "drift";
@@ -140,6 +162,8 @@ export declare const resolveAttentionInput: {
         decision_draft: "decision_draft";
         baseline_finding: "baseline_finding";
         invalidation_event: "invalidation_event";
+        conflict: "conflict";
+        alignment_pending: "alignment_pending";
     }>;
     /**
      * Full SHA / task_id list for the bypass / review snapshot. Used
@@ -152,3 +176,16 @@ export declare const resolveAttentionInput: {
     /** Optional free-text — when choice=c the operator may type a rationale. */
     rationale: z.ZodOptional<z.ZodString>;
 };
+export declare const alignDrainInput: {
+    /**
+     * Hard cap on Haiku judge calls. Excess entries stay in the deferred
+     * logs for a future drain. Default 30 (plan §4.3 budget).
+     */
+    max_haiku_calls: z.ZodOptional<z.ZodNumber>;
+    /**
+     * Dry-run: classify every entry and report what would happen but do
+     * not strip-replace source files, write alignment-pending records,
+     * or truncate the deferred logs.
+     */
+    dry_run: z.ZodOptional<z.ZodBoolean>;
+};

package/dist/mcp/schemas.js

@@ -108,19 +108,40 @@ export const resolveAttentionInput = {
      *
      * For kind=bypass, item_id is the full SHA of the FIRST flagged commit
      * (the rest go in flagged_items). For kind=review, item_id is the
-     * task_id of the FIRST pending review.
+     * task_id of the FIRST pending review. For kind=conflict, item_id is
+     * the conflict filename slug `<a-id>__<b-id>` (without `.md`).
      */
     item_id: z.string().min(1),
-    /** Operator's pick from the inline A/B/C. */
-    choice: z.enum(["a", "b", "c"]),
+    /**
+     * Operator's pick from the inline A/B/C/D. The fourth slot is only
+     * meaningful for `conflict` kind (archive-both per plan §5.4.1); other
+     * kinds reject `d`.
+     */
+    choice: z.enum(["a", "b", "c", "d"]),
     /**
      * Item kind — narrows the resolution path. The skill knows the kind
      * from the item it surfaced.
      *
-     * `bypass`  — Stop hook surfaced N commits not in `.attested-commits`.
-     *             choice=a record-bypass (DEC), b accept-as-noted, c defer.
-     * `review`  — Stop hook surfaced N pending reviewer attestations.
-     *             choice=a spawn-now, b skip, c defer.
+     * `bypass`   — Stop hook surfaced N commits not in `.attested-commits`.
+     *              choice=a record-bypass (DEC), b accept-as-noted, c defer.
+     * `review`   — Stop hook surfaced N pending reviewer attestations.
+     *              choice=a spawn-now, b skip, c defer.
+     * `conflict` — Phase 7c contradiction judge wrote a conflict file.
+     *              choice=a keep A (supersede B), b keep B (supersede A),
+     *              c merge into a fresh DEC (both old superseded),
+     *              d archive both (move conflict file to _archived/).
+     *              Plan §5.4.1 — never rewrites source files.
+     * `alignment_pending` — Layer A's Pass-2 dedup or creation judge stayed
+     *              ambiguous and wrote `.cairn/ground/alignment-pending/<slug>.md`
+     *              for operator triage (plan §4.1.A / §4.1.B).
+     *              For tier2-ambiguous (paired with an existing entity):
+     *                a=same (cite existing + strip), b=augments (sibling DEC
+     *                linked via `related` + double-cite), c=new (fresh DEC),
+     *                d=replace (new supersedes existing).
+     *              For tier3-ambiguous (no candidate):
+     *                a=decision (fresh DEC + cite), b=constraint (fresh INV
+     *                + cite), c=descriptive (drop pending, leave source),
+     *                d=none-of-these (drop pending, leave source untouched).
      */
     kind: z.enum([
         "decision_draft",
@@ -129,6 +150,8 @@ export const resolveAttentionInput = {
         "drift",
         "bypass",
         "review",
+        "conflict",
+        "alignment_pending",
     ]),
     /**
      * Full SHA / task_id list for the bypass / review snapshot. Used
@@ -141,4 +164,17 @@ export const resolveAttentionInput = {
     /** Optional free-text — when choice=c the operator may type a rationale. */
     rationale: z.string().optional(),
 };
+export const alignDrainInput = {
+    /**
+     * Hard cap on Haiku judge calls. Excess entries stay in the deferred
+     * logs for a future drain. Default 30 (plan §4.3 budget).
+     */
+    max_haiku_calls: z.number().int().min(0).max(200).optional(),
+    /**
+     * Dry-run: classify every entry and report what would happen but do
+     * not strip-replace source files, write alignment-pending records,
+     * or truncate the deferred logs.
+     */
+    dry_run: z.boolean().optional(),
+};
 //# sourceMappingURL=schemas.js.map

package/dist/mcp/schemas.js.map

@@ -1 +1 @@
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package/dist/mcp/tools/align-drain.d.ts

@@ -0,0 +1,7 @@
+import type { ToolDef } from "./types.js";
+interface Input {
+    max_haiku_calls?: number;
+    dry_run?: boolean;
+}
+export declare const alignDrainTool: ToolDef<Input>;
+export {};

package/dist/mcp/tools/align-drain.js

@@ -0,0 +1,26 @@
+import { runDrain } from "../../drain/index.js";
+import { alignDrainInput } from "../schemas.js";
+async function handler(ctx, input) {
+    const args = {
+        repoRoot: ctx.repoRoot,
+        sessionId: ctx.sessionId ?? null,
+    };
+    if (input.max_haiku_calls !== undefined)
+        args.maxHaikuCalls = input.max_haiku_calls;
+    if (input.dry_run !== undefined)
+        args.dryRun = input.dry_run;
+    const result = await runDrain(args);
+    return result;
+}
+export const alignDrainTool = {
+    name: "cairn_align_drain",
+    description: "Layer C SessionStart drain (plan §4.3). Reads .cairn/staleness/layer-a-deferred.jsonl + " +
+        "pre-commit-deferred.jsonl, re-checks each block against the current source, applies " +
+        "verdict (cite / drop / alignment-pending) using the Haiku dedup judge for ambiguous " +
+        "candidates, and truncates the deferred logs. Capped at max_haiku_calls (default 30). " +
+        "Returns counts: cited, pending, dropped, deferred, haiku calls. Idempotent. dry_run " +
+        "classifies without applying side effects.",
+    inputSchema: alignDrainInput,
+    handler,
+};
+//# sourceMappingURL=align-drain.js.map

package/dist/mcp/tools/align-drain.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"align-drain.js","sourceRoot":"","sources":["../../../src/mcp/tools/align-drain.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,sBAAsB,CAAC;AAEhD,OAAO,EAAE,eAAe,EAAE,MAAM,eAAe,CAAC;AAQhD,KAAK,UAAU,OAAO,CAAC,GAAe,EAAE,KAAY;IAClD,MAAM,IAAI,GAAmC;QAC3C,QAAQ,EAAE,GAAG,CAAC,QAAQ;QACtB,SAAS,EAAE,GAAG,CAAC,SAAS,IAAI,IAAI;KACjC,CAAC;IACF,IAAI,KAAK,CAAC,eAAe,KAAK,SAAS;QAAE,IAAI,CAAC,aAAa,GAAG,KAAK,CAAC,eAAe,CAAC;IACpF,IAAI,KAAK,CAAC,OAAO,KAAK,SAAS;QAAE,IAAI,CAAC,MAAM,GAAG,KAAK,CAAC,OAAO,CAAC;IAC7D,MAAM,MAAM,GAAG,MAAM,QAAQ,CAAC,IAAI,CAAC,CAAC;IACpC,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,MAAM,CAAC,MAAM,cAAc,GAAmB;IAC5C,IAAI,EAAE,mBAAmB;IACzB,WAAW,EACT,0FAA0F;QAC1F,sFAAsF;QACtF,sFAAsF;QACtF,uFAAuF;QACvF,sFAAsF;QACtF,2CAA2C;IAC7C,WAAW,EAAE,eAAe;IAC5B,OAAO;CACR,CAAC"}

package/dist/mcp/tools/index.js

@@ -1,3 +1,4 @@
+import { alignDrainTool } from "./align-drain.js";
 import { archiveTool } from "./archive.js";
 import { attentionDedupTool } from "./attention-dedup.js";
 import { attentionRestoreTool } from "./attention-restore.js";
@@ -47,6 +48,8 @@ export const allTools = [
     attentionRestoreTool,
     attentionServeTool,
     attentionWaitTool,
+    // Write — Layer C SessionStart drain
+    alignDrainTool,
     // Write — init pipeline (v0.2.0 MCP-native init)
     initResumeTool,
     initParallel678Tool,

package/dist/mcp/tools/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/mcp/tools/index.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,cAAc,EAAE,MAAM,kBAAkB,CAAC;AAClD,OAAO,EAAE,WAAW,EAAE,MAAM,cAAc,CAAC;AAC3C,OAAO,EAAE,kBAAkB,EAAE,MAAM,sBAAsB,CAAC;AAC1D,OAAO,EAAE,oBAAoB,EAAE,MAAM,wBAAwB,CAAC;AAC9D,OAAO,EAAE,kBAAkB,EAAE,MAAM,sBAAsB,CAAC;AAC1D,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAC;AACxD,OAAO,EAAE,uBAAuB,EAAE,MAAM,4BAA4B,CAAC;AACrE,OAAO,EAAE,qBAAqB,EAAE,MAAM,0BAA0B,CAAC;AACjE,OAAO,EAAE,eAAe,EAAE,MAAM,mBAAmB,CAAC;AACpD,OAAO,EAAE,sBAAsB,EAAE,MAAM,2BAA2B,CAAC;AACnE,OAAO,EAAE,oBAAoB,EAAE,MAAM,yBAAyB,CAAC;AAC/D,OAAO,EAAE,WAAW,EAAE,MAAM,eAAe,CAAC;AAC5C,OAAO,EAAE,aAAa,EAAE,MAAM,iBAAiB,CAAC;AAChD,OAAO,EACL,mBAAmB,EACnB,cAAc,EACd,cAAc,GACf,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AACtD,OAAO,EAAE,qBAAqB,EAAE,MAAM,0BAA0B,CAAC;AACjE,OAAO,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AACtD,OAAO,EAAE,kBAAkB,EAAE,MAAM,sBAAsB,CAAC;AAC1D,OAAO,EAAE,oBAAoB,EAAE,MAAM,wBAAwB,CAAC;AAC9D,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AACzC,OAAO,EAAE,mBAAmB,EAAE,MAAM,uBAAuB,CAAC;AAC5D,OAAO,EAAE,cAAc,EAAE,MAAM,kBAAkB,CAAC;AAClD,OAAO,EAAE,YAAY,EAAE,MAAM,eAAe,CAAC;AAE7C,MAAM,CAAC,MAAM,QAAQ,GAAuB;IAC1C,yBAAyB;IACzB,eAAmC;IACnC,oBAAwC;IACxC,sBAA0C;IAC1C,qBAAyC;IACzC,aAAiC;IACjC,mBAAuC;IACvC,gBAAoC;IACpC,qBAAyC;IACzC,6BAA6B;IAC7B,UAA8B;IAC9B,YAAgC;IAChC,WAA+B;IAC/B,4BAA4B;IAC5B,gBAAoC;IACpC,QAAQ;IACR,kBAAsC;IACtC,cAAkC;IAClC,WAA+B;IAC/B,qBAAqB;IACrB,oBAAwC;IACxC,uBAA2C;IAC3C,kBAAsC;IACtC,oBAAwC;IACxC,kBAAsC;IACtC,iBAAqC;IACrC,qCAAqC;IACrC,cAAkC;IAClC,iDAAiD;IACjD,cAAkC;IAClC,mBAAuC;IACvC,GAAI,cAAqC;CAC1C,CAAC"}

package/dist/mcp/tools/init-phases.js

@@ -26,7 +26,7 @@
  * phase outputs — a single bad call could nuke a 90KB mapper run.
  */
 import { z } from "zod";
-import { PHASE_IDS, clearProgress, freshPhaseState, readPhaseState, resumePhases, runPhase10Strip, runPhase12Multidev, runPhase1Detect, runPhase2Walker, runPhase3Mapper, runPhase3bSeed, runPhase4Pilot, runPhase5Brand, runPhase6DocsIngest, runPhase7bSourceComments, runPhase7cRulesMerge, runPhase8Baseline, runPhases678Parallel, writePhaseState, writeProgress, } from "../../init/index.js";
+import { PHASE_IDS, clearProgress, freshPhaseState, readPhaseState, resumePhases, runPhase10Strip, runPhase12Multidev, runPhase1Detect, runPhase2Walker, runPhase3Mapper, runPhase3bSeed, runPhase4Pilot, runPhase5Brand, runPhase5bTopicIndex, runPhase6DocsIngest, runPhase7bSourceComments, runPhase7cRulesMerge, runPhase8Baseline, runPhases678Parallel, writePhaseState, writeProgress, } from "../../init/index.js";
 import { mcpError } from "../errors.js";
 const phaseIdEnum = z.enum(PHASE_IDS);
 const phaseStateSchema = z.object({
@@ -54,6 +54,7 @@ const RUNNERS = {
     "3b-seed": runPhase3bSeed,
     "4-pilot": runPhase4Pilot,
     "5-brand": runPhase5Brand,
+    "5b-topic-index": runPhase5bTopicIndex,
     "6-docs-ingest": runPhase6DocsIngest,
     "7b-source-comments": runPhase7bSourceComments,
     "7c-rules-merge": runPhase7cRulesMerge,
@@ -199,6 +200,8 @@ function phaseDescription(id) {
             return "Phase 4-pilot — operator picks the seed module from mapper's top candidates (1 question).";
         case "5-brand":
             return "Phase 5-brand — operator picks how to populate the brand DEC drafts: skip / auto-fill / manual (1 question).";
+        case "5b-topic-index":
+            return "Phase 5b-topic-index — cross-source dedup pre-pass. Walks docs/*.md + CLAUDE.md + AGENTS.md + .claude/rules/* and emits topic-index.yaml + anchor-map.yaml so phases 6/7b/7c can dedup-by-topic instead of one DEC per source.";
         case "6-docs-ingest":
             return "Phase 6-docs-ingest — Haiku batch over README + docs/ → DEC drafts + canonical-map topics. No operator input.";
         case "7b-source-comments":

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+{"version":3,"file":"init-phases.js","sourceRoot":"","sources":["../../../src/mcp/tools/init-phases.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;GA0BG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EACL,SAAS,EACT,aAAa,EACb,eAAe,EACf,cAAc,EACd,YAAY,EACZ,eAAe,EACf,kBAAkB,EAClB,eAAe,EACf,eAAe,EACf,eAAe,EACf,cAAc,EACd,cAAc,EACd,cAAc,EACd,oBAAoB,EACpB,mBAAmB,EACnB,wBAAwB,EACxB,oBAAoB,EACpB,iBAAiB,EACjB,oBAAoB,EACpB,eAAe,EACf,aAAa,GAMd,MAAM,qBAAqB,CAAC;AAE7B,OAAO,EAAE,QAAQ,EAAE,MAAM,cAAc,CAAC;AAGxC,MAAM,WAAW,GAAG,CAAC,CAAC,IAAI,CACxB,SAA+C,CAChD,CAAC;AAEF,MAAM,gBAAgB,GAAG,CAAC,CAAC,MAAM,CAAC;IAChC,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;IAC3B,YAAY,EAAE,WAAW;IACzB,OAAO,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC;IAC1C,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;IAC7B,SAAS,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;IAC5B,aAAa,EAAE,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC;CAC5B,CAAC,CAAC;AAEH,MAAM,cAAc,GAAG;IACrB,iEAAiE;IACjE,iEAAiE;IACjE,mEAAmE;IACnE,KAAK,EAAE,gBAAgB,CAAC,QAAQ,EAAE;IAClC,mEAAmE;IACnE,sDAAsD;IACtD,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;CAC9B,CAAC;AAEF,MAAM,eAAe,GAAG,EAAE,CAAC;AAE3B,MAAM,OAAO,GAA6D;IACxE,UAAU,EAAE,eAAe;IAC3B,UAAU,EAAE,eAAe;IAC3B,UAAU,EAAE,eAAe;IAC3B,SAAS,EAAE,cAAc;IACzB,SAAS,EAAE,cAAc;IACzB,SAAS,EAAE,cAAc;IACzB,gBAAgB,EAAE,oBAAoB;IACtC,eAAe,EAAE,mBAAmB;IACpC,oBAAoB,EAAE,wBAAwB;IAC9C,gBAAgB,EAAE,oBAAoB;IACtC,YAAY,EAAE,iBAAiB;IAC/B,UAAU,EAAE,eAAe;IAC3B,aAAa,EAAE,kBAAkB;CAClC,CAAC;AA+BF,SAAS,MAAM,CAAC,MAAmB;IACjC,IAAI,MAAM,CAAC,MAAM,KAAK,UAAU,EAAE,CAAC;QACjC,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,CAAC,SAAS,EAAE,CAAC;IAC7D,CAAC;IACD,IAAI,MAAM,CAAC,MAAM,KAAK,aAAa,EAAE,CAAC;QACpC,OAAO,EAAE,MAAM,EAAE,aAAa,EAAE,QAAQ,EAAE,MAAM,CAAC,QAAQ,EAAE,CAAC;IAC9D,CAAC;IACD,OAAO,EAAE,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,MAAM,CAAC,KAAK,EAAE,CAAC;AAClD,CAAC;AAED,SAAS,aAAa,CAAC,EAAW;IAChC,OAAO;QACL,IAAI,EAAE,oBAAoB,WAAW,CAAC,EAAE,CAAC,EAAE;QAC3C,WAAW,EAAE,gBAAgB,CAAC,EAAE,CAAC;QACjC,WAAW,EAAE,cAAc;QAC3B,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,KAAK,EAAE,EAAE;YAC5B,6DAA6D;YAC7D,2DAA2D;YAC3D,IAAI,KAAK,GAAsB,KAAK,CAAC,KAAK,IAAI,IAAI,CAAC;YACnD,IAAI,KAAK,KAAK,IAAI,EAAE,CAAC;gBACnB,KAAK,GAAG,cAAc,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;YACvC,CAAC;YACD,IAAI,KAAK,KAAK,IAAI,EAAE,CAAC;gBACnB,OAAO,QAAQ,CACb,mBAAmB,EACnB,oBAAoB,WAAW,CAAC,EAAE,CAAC,mGAAmG,CACvI,CAAC;YACJ,CAAC;YACD,kEAAkE;YAClE,IAAI,KAAK,CAAC,YAAY,KAAK,EAAE,EAAE,CAAC;gBAC9B,OAAO,QAAQ,CACb,mBAAmB,EACnB,oBAAoB,WAAW,CAAC,EAAE,CAAC,gCAAgC,EAAE,SAAS,KAAK,CAAC,YAAY,EAAE,CACnG,CAAC;YACJ,CAAC;YACD,gEAAgE;YAChE,4DAA4D;YAC5D,8DAA8D;YAC9D,IAAI,KAAK,CAAC,QAAQ,KAAK,GAAG,CAAC,QAAQ,EAAE,CAAC;gBACpC,OAAO,QAAQ,CACb,mBAAmB,EACnB,kBAAkB,KAAK,CAAC,QAAQ,+BAA+B,GAAG,CAAC,QAAQ,EAAE,CAC9E,CAAC;YACJ,CAAC;YACD,kEAAkE;YAClE,gEAAgE;YAChE,gEAAgE;YAChE,8CAA8C;YAC9C,MAAM,WAAW,GACf,KAAK,CAAC,MAAM,KAAK,SAAS,IAAI,KAAK,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC;gBACnD,CAAC,CAAC,EAAE,GAAG,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,MAAM,EAAE;gBACpC,CAAC,CAAC,KAAK,CAAC;YACZ,MAAM,MAAM,GAAG,OAAO,CAAC,EAAE,CAAC,CAAC;YAC3B,gEAAgE;YAChE,kEAAkE;YAClE,+DAA+D;YAC/D,4DAA4D;YAC5D,kEAAkE;YAClE,4DAA4D;YAC5D,8DAA8D;YAC9D,MAAM,WAAW,GACf,EAAE,KAAK,UAAU;gBACjB,EAAE,KAAK,eAAe;gBACtB,EAAE,KAAK,oBAAoB;gBAC3B,EAAE,KAAK,gBAAgB,CAAC;YAC1B,IAAI,CAAC,WAAW,EAAE,CAAC;gBACjB,aAAa,CAAC,KAAK,CAAC,QAAQ,EAAE;oBAC5B,KAAK,EAAE,EAAE;oBACT,KAAK,EAAE,CAAC;oBACR,KAAK,EAAE,CAAC;oBACR,SAAS,EAAE,IAAI,CAAC,GAAG,EAAE;iBACtB,CAAC,CAAC;YACL,CAAC;YACD,MAAM,EAAE,GAAG,WAAW,CAAC,GAAG,EAAE,CAAC;YAC7B,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,WAAW,CAAC,CAAC;YACzC,MAAM,UAAU,GAAG,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC,GAAG,EAAE,GAAG,EAAE,CAAC,CAAC;YACtD,aAAa,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC;YAC9B,qEAAqE;YACrE,qEAAqE;YACrE,oEAAoE;YACpE,8DAA8D;YAC9D,kEAAkE;YAClE,IAAI,MAAM,CAAC,MAAM,KAAK,OAAO,EAAE,CAAC;gBAC9B,MAAM,QAAQ,GAAG,MAAM,CAAC,KAAK,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC;gBAC1C,IAAI,OAAO,QAAQ,KAAK,QAAQ,IAAI,QAAQ,KAAK,IAAI,EAAE,CAAC;oBACtD,MAAM,GAAG,GAAG,QAAmC,CAAC;oBAChD,IAAI,GAAG,CAAC,aAAa,CAAC,KAAK,SAAS,EAAE,CAAC;wBACrC,GAAG,CAAC,aAAa,CAAC,GAAG,UAAU,CAAC;oBAClC,CAAC;gBACH,CAAC;YACH,CAAC;YACD,iEAAiE;YACjE,8DAA8D;YAC9D,gEAAgE;YAChE,kEAAkE;YAClE,IAAI,MAAM,CAAC,MAAM,KAAK,OAAO,EAAE,CAAC;gBAC9B,IAAI,CAAC;oBACH,eAAe,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;gBAChC,CAAC;gBAAC,OAAO,GAAG,EAAE,CAAC;oBACb,OAAO,QAAQ,CACb,gBAAgB,EAChB,iCAAiC,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,CACpF,CAAC;gBACJ,CAAC;YACH,CAAC;YACD,iEAAiE;YACjE,2DAA2D;YAC3D,gEAAgE;YAChE,OAAO,MAAM,CAAC,MAAM,CAAC,CAAC;QACxB,CAAC;KACF,CAAC;AACJ,CAAC;AAED,SAAS,cAAc;IACrB,OAAO;QACL,IAAI,EAAE,mBAAmB;QACzB,WAAW,EACT,qSAAqS;QACvS,WAAW,EAAE,eAAe;QAC5B,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,EAAE;YACrB,MAAM,MAAM,GAAG,YAAY,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;YAC1C,gEAAgE;YAChE,mEAAmE;YACnE,MAAM,QAAQ,GACZ,MAAM,CAAC,KAAK,CAAC,QAAQ,KAAK,GAAG,CAAC,QAAQ;gBACpC,CAAC,CAAC,eAAe,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,QAAQ;gBACxC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,QAAQ,CAAC;YAC5B,OAAO;gBACL,MAAM,EAAE,MAAM,CAAC,MAAM;gBACrB,SAAS,EAAE,MAAM,CAAC,SAAS;gBAC3B,QAAQ;aACT,CAAC;QACJ,CAAC;KACF,CAAC;AACJ,CAAC;AAED,SAAS,WAAW,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package/dist/mcp/tools/resolve-attention.d.ts

@@ -23,8 +23,8 @@
 import type { ToolDef } from "./types.js";
 interface Input {
     item_id: string;
-    choice: "a" | "b" | "c";
-    kind: "decision_draft" | "baseline_finding" | "invalidation_event" | "drift" | "bypass" | "review";
+    choice: "a" | "b" | "c" | "d";
+    kind: "decision_draft" | "baseline_finding" | "invalidation_event" | "drift" | "bypass" | "review" | "conflict" | "alignment_pending";
     flagged_items?: string[];
     defer_hours?: number;
     rationale?: string;